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Expression Template: BP130198_at

Template Basic Information

Template name:	BP130198_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U490783
External db links:	GenBank: BP130198

Annotations for unigene SGN-U490783 (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits (or none blast was used over this dataset)
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
BP130198_at_probe_01	PM	data not available	data not available	1
BP130198_at_probe_02	PM	data not available	data not available	1
BP130198_at_probe_03	PM	data not available	data not available	1
BP130198_at_probe_04	PM	data not available	data not available	1
BP130198_at_probe_05	PM	data not available	data not available	1
BP130198_at_probe_06	PM	data not available	data not available	1
BP130198_at_probe_07	PM	data not available	data not available	1
BP130198_at_probe_08	PM	data not available	data not available	1
BP130198_at_probe_09	PM	data not available	data not available	1
BP130198_at_probe_10	PM	data not available	data not available	1
BP130198_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	7.46	7.57	0.21	0.03
	TobEA vegetative shoot apex	shoot apex	8	8	7.22	7.54	0.60	0.08
	TobEA closed bud	flower bud	5	5	7.63	7.57	0.26	0.03
	TobEA open bud	flower bud	5	5	7.13	7.30	0.44	0.06
	TobEA cotyledons	cotyledon	5	5	6.46	6.71	0.55	0.09
	TobEA flower	flower	5	5	7.42	7.27	0.39	0.05
	TobEA lower stem	stem internode	5	5	7.25	7.18	0.16	0.02
	TobEA upper stem	stem internode	5	5	6.71	6.76	0.36	0.05
	TobEA cauline leaf	cauline leaf	5	5	6.82	6.83	0.37	0.05
	TobEA early senescent leaf	adult vascular leaf	5	5	7.54	7.60	0.87	0.11
	TobEA late senescent leaf	adult vascular leaf	5	5	7.55	7.43	0.28	0.04
	TobEA mature leaf	adult vascular leaf	5	5	7.53	7.55	0.24	0.03
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	7.54	7.74	0.44	0.06
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	7.07	6.82	0.66	0.09
	TobEA young leaf	juvenile vascular leaf	5	5	7.09	7.07	0.23	0.03
	TobEA mature root	root	5	5	6.82	6.89	0.25	0.04
	TobEA young root	root	6	6	6.76	6.83	0.29	0.04
	TobEA seed	seed	6	6	7.66	7.67	0.27	0.04
	TobEA young shoot	shoot system	5	5	6.53	6.43	0.44	0.07

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	7.1952553	2e-4	P
	Atlas 144.CEL	7.2868423	7e-4	P
	Atlas 145.CEL	7.613095	2e-4	P
	Atlas 146.CEL	7.565783	0.003	P
	Atlas 147.CEL	7.659834	2e-4	P
TobEA vegetative shoot apex	Atlas 247.CEL	7.5134296	2e-4	P
	Atlas 59.CEL	6.314985	0.019	P
	Atlas 61.CEL	6.6263676	7e-4	P
	Atlas 246.CEL	7.562472	2e-4	P
	Atlas 248.CEL	7.5615253	7e-4	P
	Atlas 249.CEL	7.882319	7e-4	P
	Atlas 250.CEL	7.7223263	2e-4	P
	Atlas 58.CEL	6.607292	2e-4	P
TobEA closed bud	Atlas 195.CEL	7.5690327	0.006	P
	Atlas 199.CEL	7.5181103	0.001	P
	Atlas 161.CEL	7.6336193	0.002	P
	Atlas 163.CEL	7.385391	7e-4	P
	Atlas 173.CEL	8.0608	2e-4	P
TobEA open bud	Atlas 159.CEL	6.67805	0.001	P
	Atlas 167.CEL	7.4237313	7e-4	P
	Atlas 169.CEL	7.5967865	0.001	P
	Atlas 171.CEL	7.295128	2e-4	P
	Atlas 244.CEL	6.6416597	2e-4	P
TobEA cotyledons	Atlas 70.CEL	5.8061867	0.112	A
	Atlas 75.CEL	6.7101707	0.095	A
	Atlas 71.CEL	7.0078707	0.014	P
	Atlas 74.CEL	6.863088	0.002	P
	Atlas 69.CEL	5.931444	0.038	P
TobEA flower	Atlas 158.CEL	7.0850945	0.002	P
	Atlas 165.CEL	7.2707005	2e-4	P
	Atlas 166.CEL	7.0853324	0.001	P
	Atlas 197.CEL	7.6735034	2e-4	P
	Atlas 198.CEL	7.9763284	2e-4	P
TobEA lower stem	Atlas 164.CEL	7.0998263	2e-4	P
	Atlas 200.CEL	7.173037	7e-4	P
	Atlas 245.CEL	7.520725	2e-4	P
	Atlas 172.CEL	7.257782	0.002	P
	Atlas 174.CEL	7.1754065	0.011	P
TobEA upper stem	Atlas 160.CEL	6.1709585	7e-4	P
	Atlas 168.CEL	6.957841	0.002	P
	Atlas 196.CEL	7.099849	2e-4	P
	Atlas 170.CEL	6.757995	2e-4	P
	Atlas 162.CEL	6.5594525	2e-4	P
TobEA cauline leaf	Atlas 229.CEL	6.684563	2e-4	P
	Atlas 237.CEL	6.304405	0.002	P
	Atlas 231.CEL	6.9943175	7e-4	P
	Atlas 233.CEL	7.2980685	0.001	P
	Atlas 235.CEL	6.834017	2e-4	P
TobEA early senescent leaf	Atlas 182.CEL	6.9399567	2e-4	P
	Atlas 175.CEL	6.4326634	0.038	P
	Atlas 183.CEL	7.604021	0.011	P
	Atlas 187.CEL	8.216255	0.002	P
	Atlas 191.CEL	8.515838	2e-4	P
TobEA late senescent leaf	Atlas 178.CEL	7.27669	0.001	P
	Atlas 194.CEL	7.6246147	2e-4	P
	Atlas 179.CEL	7.9880266	0.003	P
	Atlas 186.CEL	7.420928	0.006	P
	Atlas 190.CEL	7.4276767	0.001	P
TobEA mature leaf	Atlas 94.CEL	7.411353	7e-4	P
	Atlas 95.CEL	7.221178	2e-4	P
	Atlas 93.CEL	7.8563476	7e-4	P
	Atlas 97.CEL	7.6112866	7e-4	P
	Atlas 96.CEL	7.545484	2e-4	P
TobEA mid/early senescent leaf	Atlas 181.CEL	7.8543067	7e-4	P
	Atlas 176.CEL	6.999691	2e-4	P
	Atlas 184.CEL	7.1171303	0.008	P
	Atlas 188.CEL	7.7406187	0.004	P
	Atlas 192.CEL	7.9659686	7e-4	P
TobEA mid/late senescent leaf	Atlas 177.CEL	6.398827	0.038	P
	Atlas 185.CEL	7.888057	0.002	P
	Atlas 189.CEL	7.6610346	0.001	P
	Atlas 193.CEL	6.5975165	7e-4	P
	Atlas 180.CEL	6.8203883	0.003	P
TobEA young leaf	Atlas 56.CEL	7.210517	0.001	P
	Atlas 53.CEL	7.362816	0.006	P
	Atlas 57.CEL	7.069426	7e-4	P
	Atlas 54.CEL	6.7445574	2e-4	P
	Atlas 55.CEL	7.055156	0.038	P
TobEA mature root	Atlas 65.CEL	6.9399056	0.011	P
	Atlas 66.CEL	6.6000686	0.002	P
	Atlas 63.CEL	7.132889	0.001	P
	Atlas 67.CEL	6.8899317	0.002	P
	Atlas 64.CEL	6.5226684	2e-4	P
TobEA young root	Atlas 40.CEL	6.8134737	0.004	P
	Atlas 44.CEL	6.3982735	0.014	P
	Atlas 41.CEL	6.8371196	0.004	P
	Atlas 39.CEL	7.1970334	0.014	P
	Atlas 42.CEL	6.860515	0.003	P
	Atlas 43.CEL	6.4685936	0.004	P
TobEA seed	Atlas 79.CEL	8.064622	0.002	P
	Atlas 98.CEL	7.7328305	0.002	P
	Atlas 99.CEL	7.726029	0.001	P
	Atlas 77.CEL	7.621006	0.002	P
	Atlas 78.CEL	7.559637	0.008	P
	Atlas 76.CEL	7.2359705	0.002	P
TobEA young shoot	Atlas 89.CEL	6.153531	0.014	P
	Atlas 87.CEL	7.095971	2e-4	P
	Atlas 88.CEL	6.868165	7e-4	P
	Atlas 86.CEL	6.4349475	0.004	P
	Atlas 90.CEL	6.1018796	0.030	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (4 templates correlated)

Template	Pearson	Internal Mapping
EB432696_at	0.8266522	SGN-U457235
C7384_at	0.8265142	SGN-U448864
EB431991_at	0.8210588	SGN-U448896
TT10_I20_at	0.8142335	SGN-U462437

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