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Expression Template: C3913_at

Template Basic Information

Template name:	C3913_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U424574
External db links:	data not available

Annotations for unigene SGN-U424574 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|16755592\|gb\|AAL28022.1\|	374	8e-102	100	561 bp (49.7%)	1
Description:	small GTPase Rab2 [Nicotiana tabacum]
arabidopsis	blastx	At4G17170.1	370	1e-102	98.4	561 bp (49.7%)	1
Description:	Symbols: AtRABB1c, AtRab2A, AT-RAB2 \| AT-RAB2 (Arabidopsis Rab GTPase homolog B1c); GTP bindin&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
C3913_at_probe_01	PM	data not available	data not available	1
C3913_at_probe_02	PM	data not available	data not available	1
C3913_at_probe_03	PM	data not available	data not available	1
C3913_at_probe_04	PM	data not available	data not available	1
C3913_at_probe_05	PM	data not available	data not available	1
C3913_at_probe_06	PM	data not available	data not available	1
C3913_at_probe_07	PM	data not available	data not available	1
C3913_at_probe_08	PM	data not available	data not available	1
C3913_at_probe_09	PM	data not available	data not available	1
C3913_at_probe_10	PM	data not available	data not available	1
C3913_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.13	8.18	0.38	0.05
	TobEA vegetative shoot apex	shoot apex	8	8	9.39	9.40	0.23	0.02
	TobEA closed bud	flower bud	5	5	9.29	9.21	0.16	0.02
	TobEA open bud	flower bud	5	5	8.78	8.72	0.18	0.02
	TobEA cotyledons	cotyledon	5	5	9.68	9.65	0.26	0.03
	TobEA flower	flower	5	5	9.72	9.74	0.24	0.02
	TobEA lower stem	stem internode	5	5	10.13	10.23	0.20	0.02
	TobEA upper stem	stem internode	5	5	10.06	10.10	0.41	0.04
	TobEA cauline leaf	cauline leaf	5	5	9.58	9.64	0.16	0.02
	TobEA early senescent leaf	adult vascular leaf	5	5	10.19	10.01	0.37	0.04
	TobEA late senescent leaf	adult vascular leaf	5	5	10.30	10.16	0.30	0.03
	TobEA mature leaf	adult vascular leaf	5	5	10.06	10.05	0.11	0.01
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	10.42	10.49	0.28	0.03
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	10.31	10.08	0.49	0.05
	TobEA young leaf	juvenile vascular leaf	5	5	9.32	9.32	0.14	0.02
	TobEA mature root	root	5	5	9.82	9.85	0.14	0.01
	TobEA young root	root	6	6	10.10	10.09	0.19	0.02
	TobEA seed	seed	6	6	9.27	9.26	0.10	0.01
	TobEA young shoot	shoot system	5	5	9.68	9.70	0.10	0.01

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 145.CEL	7.4857264	2e-4	P
	Atlas 143.CEL	8.135626	2e-4	P
	Atlas 146.CEL	8.3844385	0.002	P
	Atlas 147.CEL	8.175773	7e-4	P
	Atlas 144.CEL	8.448769	2e-4	P
TobEA vegetative shoot apex	Atlas 250.CEL	8.973613	2e-4	P
	Atlas 249.CEL	9.401604	2e-4	P
	Atlas 58.CEL	9.637992	2e-4	P
	Atlas 246.CEL	9.168415	2e-4	P
	Atlas 247.CEL	9.481358	2e-4	P
	Atlas 248.CEL	9.401852	2e-4	P
	Atlas 59.CEL	9.388581	2e-4	P
	Atlas 61.CEL	9.649465	2e-4	P
TobEA closed bud	Atlas 163.CEL	9.3372	2e-4	P
	Atlas 161.CEL	9.548749	2e-4	P
	Atlas 195.CEL	9.151418	2e-4	P
	Atlas 199.CEL	9.213103	7e-4	P
	Atlas 173.CEL	9.193746	0.001	P
TobEA open bud	Atlas 159.CEL	9.057006	2e-4	P
	Atlas 171.CEL	8.720344	2e-4	P
	Atlas 244.CEL	8.838169	2e-4	P
	Atlas 167.CEL	8.720608	2e-4	P
	Atlas 169.CEL	8.558948	0.001	P
TobEA cotyledons	Atlas 69.CEL	9.648105	2e-4	P
	Atlas 70.CEL	10.02901	2e-4	P
	Atlas 71.CEL	9.820837	7e-4	P
	Atlas 74.CEL	9.329054	2e-4	P
	Atlas 75.CEL	9.56234	2e-4	P
TobEA flower	Atlas 198.CEL	9.497524	0.001	P
	Atlas 166.CEL	9.82553	2e-4	P
	Atlas 158.CEL	9.741065	2e-4	P
	Atlas 165.CEL	10.055168	2e-4	P
	Atlas 197.CEL	9.475426	2e-4	P
TobEA lower stem	Atlas 174.CEL	10.228192	2e-4	P
	Atlas 172.CEL	10.266143	7e-4	P
	Atlas 200.CEL	10.10874	2e-4	P
	Atlas 245.CEL	9.78129	2e-4	P
	Atlas 164.CEL	10.257317	2e-4	P
TobEA upper stem	Atlas 168.CEL	10.418456	2e-4	P
	Atlas 196.CEL	9.666766	7e-4	P
	Atlas 160.CEL	9.627684	2e-4	P
	Atlas 162.CEL	10.095262	2e-4	P
	Atlas 170.CEL	10.513783	2e-4	P
TobEA cauline leaf	Atlas 231.CEL	9.329613	2e-4	P
	Atlas 237.CEL	9.712863	2e-4	P
	Atlas 233.CEL	9.539744	2e-4	P
	Atlas 235.CEL	9.642221	2e-4	P
	Atlas 229.CEL	9.692416	2e-4	P
TobEA early senescent leaf	Atlas 175.CEL	10.675179	2e-4	P
	Atlas 182.CEL	10.486185	2e-4	P
	Atlas 183.CEL	9.952624	0.006	P
	Atlas 187.CEL	10.013187	0.002	P
	Atlas 191.CEL	9.802462	7e-4	P
TobEA late senescent leaf	Atlas 179.CEL	10.115461	0.003	P
	Atlas 178.CEL	10.755263	2e-4	P
	Atlas 186.CEL	10.165016	2e-4	P
	Atlas 190.CEL	10.006715	2e-4	P
	Atlas 194.CEL	10.448105	7e-4	P
TobEA mature leaf	Atlas 95.CEL	10.177334	2e-4	P
	Atlas 96.CEL	10.164375	2e-4	P
	Atlas 93.CEL	10.052152	2e-4	P
	Atlas 94.CEL	9.935208	7e-4	P
	Atlas 97.CEL	9.980041	2e-4	P
TobEA mid/early senescent leaf	Atlas 184.CEL	10.579757	2e-4	P
	Atlas 176.CEL	10.746328	2e-4	P
	Atlas 188.CEL	10.230693	7e-4	P
	Atlas 192.CEL	10.493404	2e-4	P
	Atlas 181.CEL	10.055875	7e-4	P
TobEA mid/late senescent leaf	Atlas 189.CEL	9.806617	0.001	P
	Atlas 193.CEL	10.729562	2e-4	P
	Atlas 180.CEL	10.077369	0.001	P
	Atlas 185.CEL	10.006655	2e-4	P
	Atlas 177.CEL	10.941395	7e-4	P
TobEA young leaf	Atlas 53.CEL	9.274783	2e-4	P
	Atlas 54.CEL	9.442371	2e-4	P
	Atlas 57.CEL	9.105353	2e-4	P
	Atlas 55.CEL	9.443503	2e-4	P
	Atlas 56.CEL	9.323693	0.001	P
TobEA mature root	Atlas 64.CEL	9.96792	7e-4	P
	Atlas 63.CEL	9.923528	7e-4	P
	Atlas 67.CEL	9.707785	2e-4	P
	Atlas 65.CEL	9.854011	2e-4	P
	Atlas 66.CEL	9.633714	2e-4	P
TobEA young root	Atlas 39.CEL	10.024035	2e-4	P
	Atlas 41.CEL	10.310957	7e-4	P
	Atlas 42.CEL	10.160256	2e-4	P
	Atlas 43.CEL	10.283967	2e-4	P
	Atlas 40.CEL	9.995207	2e-4	P
	Atlas 44.CEL	9.824668	2e-4	P
TobEA seed	Atlas 76.CEL	9.1378975	0.002	P
	Atlas 77.CEL	9.438767	2e-4	P
	Atlas 78.CEL	9.244495	2e-4	P
	Atlas 98.CEL	9.244869	2e-4	P
	Atlas 99.CEL	9.300767	7e-4	P
	Atlas 79.CEL	9.270798	2e-4	P
TobEA young shoot	Atlas 86.CEL	9.765618	2e-4	P
	Atlas 89.CEL	9.677513	2e-4	P
	Atlas 87.CEL	9.746192	2e-4	P
	Atlas 88.CEL	9.701356	2e-4	P
	Atlas 90.CEL	9.521816	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (7 templates correlated)

Template	Pearson	Internal Mapping
EB680760_at	0.8197628	SGN-U476476
C3783_s_at	0.8081738	SGN-U445135
C514_at	0.8057037	SGN-U438059
C4685_at	0.8057031	SGN-U442047
C5862_s_at	0.8023366	SGN-U442047
EB445071_x_at	0.80176	SGN-U439210
C581_at	0.8010213	SGN-U434471

Correlation Type:

Negative correlations (8 templates correlated)

Template	Pearson	Internal Mapping
C2644_at	-0.8316473	SGN-U440331
DV159152_at	-0.8182623	SGN-U443282
TT24_P05_at	-0.813561	SGN-U446606
DW001276_at	-0.8096252	SGN-U430848
EB679167_at	-0.8057491	SGN-U437169
EB677473_at	-0.8050846	SGN-U431104
C6863_s_at	-0.8035619	SGN-U428094
TT26_G08_at	-0.8016526	SGN-U449275

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