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Expression Template: C1701_at

Template Basic Information

Template name:	C1701_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U439372
External db links:	data not available

Annotations for unigene SGN-U439372 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157347298\|emb\|CAO17827.1\|	278	3e-73	69.6	681 bp (71.5%)	3
Description:	unnamed
arabidopsis	blastx	At2G29420.1	150	1e-36	45.1	612 bp (64.2%)	3
Description:	Symbols: GST25, ATGSTU7 \| ATGSTU7 (GLUTATHIONE S-TRANSFERASE 25); glutathione transferase \| ch&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
C1701_at_probe_01	PM	data not available	data not available	1
C1701_at_probe_02	PM	data not available	data not available	1
C1701_at_probe_03	PM	data not available	data not available	1
C1701_at_probe_04	PM	data not available	data not available	1
C1701_at_probe_05	PM	data not available	data not available	1
C1701_at_probe_06	PM	data not available	data not available	1
C1701_at_probe_07	PM	data not available	data not available	1
C1701_at_probe_08	PM	data not available	data not available	1
C1701_at_probe_09	PM	data not available	data not available	1
C1701_at_probe_10	PM	data not available	data not available	1
C1701_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	3.73	3.97	0.94	0.25
	TobEA vegetative shoot apex	shoot apex	8	8	3.67	4.00	1.14	0.31
	TobEA closed bud	flower bud	5	5	2.05	1.46	1.29	0.63
	TobEA open bud	flower bud	5	5	2.22	1.72	1.63	0.73
	TobEA cotyledons	cotyledon	5	5	4.04	5.17	2.04	0.50
	TobEA flower	flower	5	5	5.21	4.91	0.51	0.10
	TobEA lower stem	stem internode	5	5	4.73	4.81	0.83	0.17
	TobEA upper stem	stem internode	5	5	2.40	3.29	2.23	0.93
	TobEA cauline leaf	cauline leaf	5	5	6.97	6.88	0.64	0.09
	TobEA early senescent leaf	adult vascular leaf	5	5	7.07	7.05	0.34	0.05
	TobEA late senescent leaf	adult vascular leaf	5	5	7.19	6.95	0.56	0.08
	TobEA mature leaf	adult vascular leaf	5	5	6.79	6.94	0.34	0.05
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	6.56	6.97	1.36	0.21
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	6.86	6.61	0.74	0.11
	TobEA young leaf	juvenile vascular leaf	5	5	3.50	4.29	1.62	0.46
	TobEA mature root	root	5	5	7.30	7.29	0.36	0.05
	TobEA young root	root	6	6	7.78	7.86	0.55	0.07
	TobEA seed	seed	6	6	2.09	1.93	1.08	0.52
	TobEA young shoot	shoot system	5	5	5.10	4.85	0.49	0.10

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 146.CEL	3.4677522	0.568	A
	Atlas 143.CEL	2.2526047	0.726	A
	Atlas 144.CEL	4.261002	0.150	A
	Atlas 145.CEL	3.9727294	0.601	A
	Atlas 147.CEL	4.70365	0.334	A
TobEA vegetative shoot apex	Atlas 248.CEL	4.487613	0.304	A
	Atlas 250.CEL	4.8412614	0.195	A
	Atlas 61.CEL	4.189661	0.432	A
	Atlas 246.CEL	1.3001944	0.634	A
	Atlas 58.CEL	4.3842225	0.246	A
	Atlas 249.CEL	3.8068612	0.304	A
	Atlas 59.CEL	3.0011609	0.366	A
	Atlas 247.CEL	3.3150358	0.466	A
TobEA closed bud	Atlas 163.CEL	0.7647686	0.905	A
	Atlas 195.CEL	1.4284823	0.905	A
	Atlas 199.CEL	1.4597999	0.850	A
	Atlas 161.CEL	4.0603895	0.246	A
	Atlas 173.CEL	2.5184674	0.829	A
TobEA open bud	Atlas 167.CEL	1.1805791	0.696	A
	Atlas 171.CEL	1.720511	0.747	A
	Atlas 159.CEL	4.067234	0.274	A
	Atlas 169.CEL	0.36321455	0.986	A
	Atlas 244.CEL	3.7688963	0.500	A
TobEA cotyledons	Atlas 69.CEL	5.2993774	0.334	A
	Atlas 75.CEL	1.8691351	0.754	A
	Atlas 70.CEL	6.0442314	0.095	A
	Atlas 71.CEL	1.8043532	0.568	A
	Atlas 74.CEL	5.169836	0.188	A
TobEA flower	Atlas 198.CEL	4.7758136	0.112	A
	Atlas 158.CEL	4.8298388	0.112	A
	Atlas 165.CEL	5.646939	0.095	A
	Atlas 166.CEL	5.867906	0.030	P
	Atlas 197.CEL	4.9137244	0.195	A
TobEA lower stem	Atlas 164.CEL	5.694619	0.112	A
	Atlas 172.CEL	4.813972	0.246	A
	Atlas 200.CEL	3.92935	0.219	A
	Atlas 174.CEL	3.8632	0.304	A
	Atlas 245.CEL	5.3663077	0.081	A
TobEA upper stem	Atlas 160.CEL		0.870	A
	Atlas 168.CEL	4.2575283	0.068	A
	Atlas 162.CEL	4.43908	0.274	A
	Atlas 170.CEL	3.287998	0.334	A
	Atlas 196.CEL		0.998	A
TobEA cauline leaf	Atlas 231.CEL	6.8800406	0.002	P
	Atlas 233.CEL	6.094285	0.011	P
	Atlas 237.CEL	7.338465	0.001	P
	Atlas 229.CEL	6.737712	0.004	P
	Atlas 235.CEL	7.8046465	0.002	P
TobEA early senescent leaf	Atlas 175.CEL	7.287998	0.003	P
	Atlas 183.CEL	6.547454	0.030	P
	Atlas 187.CEL	7.006715	0.081	A
	Atlas 191.CEL	7.0532527	0.001	P
	Atlas 182.CEL	7.430386	0.004	P
TobEA late senescent leaf	Atlas 179.CEL	7.6326175	0.011	P
	Atlas 178.CEL	7.933377	0.001	P
	Atlas 186.CEL	6.945242	0.004	P
	Atlas 190.CEL	6.6109986	0.011	P
	Atlas 194.CEL	6.843067	0.002	P
TobEA mature leaf	Atlas 94.CEL	6.9371266	0.003	P
	Atlas 95.CEL	7.079835	0.006	P
	Atlas 96.CEL	7.0422735	0.019	P
	Atlas 93.CEL	6.2959414	0.001	P
	Atlas 97.CEL	6.5708055	0.008	P
TobEA mid/early senescent leaf	Atlas 176.CEL	6.97461	0.003	P
	Atlas 181.CEL	4.3196244	0.274	A
	Atlas 184.CEL	6.4505014	0.046	P
	Atlas 188.CEL	7.1480474	0.003	P
	Atlas 192.CEL	7.910807	0.002	P
TobEA mid/late senescent leaf	Atlas 177.CEL	7.9274936	0.004	P
	Atlas 180.CEL	6.033238	0.006	P
	Atlas 185.CEL	6.478455	0.011	P
	Atlas 189.CEL	6.6132736	0.008	P
	Atlas 193.CEL	7.2510686	0.004	P
TobEA young leaf	Atlas 57.CEL	1.7431405	0.726	A
	Atlas 53.CEL	5.2015452	0.399	A
	Atlas 54.CEL	4.2859445	0.246	A
	Atlas 55.CEL	1.7741055	0.781	A
	Atlas 56.CEL	4.473191	0.171	A
TobEA mature root	Atlas 64.CEL	7.341797	0.003	P
	Atlas 65.CEL	6.856245	0.008	P
	Atlas 66.CEL	7.2911763	0.006	P
	Atlas 63.CEL	7.142341	0.006	P
	Atlas 67.CEL	7.848947	0.004	P
TobEA young root	Atlas 39.CEL	7.1492686	0.019	P
	Atlas 40.CEL	7.744282	0.001	P
	Atlas 44.CEL	8.5275955	0.004	P
	Atlas 41.CEL	7.153949	0.006	P
	Atlas 42.CEL	8.162351	0.003	P
	Atlas 43.CEL	7.967455	0.008	P
TobEA seed	Atlas 79.CEL	3.7664096	0.696	A
	Atlas 98.CEL	2.1301448	0.696	A
	Atlas 99.CEL	1.488986	0.870	A
	Atlas 76.CEL	1.7381406	0.805	A
	Atlas 77.CEL	0.6406669	0.954	A
	Atlas 78.CEL	2.777908	0.805	A
TobEA young shoot	Atlas 89.CEL	4.754333	0.171	A
	Atlas 86.CEL	5.7058806	0.171	A
	Atlas 90.CEL	4.8515043	0.081	A
	Atlas 87.CEL	5.5481763	0.195	A
	Atlas 88.CEL	4.6402893	0.304	A

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (11 templates correlated)

Template	Pearson	Internal Mapping
EB446153_at	0.8365694	SGN-U446485
DW005103_x_at	0.8364688	SGN-U424714
C10658_at	0.8324921	SGN-U429141
EB682949_s_at	0.829459	SGN-U424714
EB431225_at	0.826993	SGN-U439732
C5203_at	0.8244734	SGN-U450832
C5347_s_at	0.8159962	SGN-U447575
C5378_at	0.812018	SGN-U425552
C5203_s_at	0.8078942	SGN-U450832
EB443629_x_at	0.8049387	SGN-U461143
C2324_at	0.8042971	SGN-U449113

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