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Expression Template: C11214_at

Template Basic Information

Template name:	C11214_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U428247
External db links:	data not available

Annotations for unigene SGN-U428247 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157337734\|emb\|CAO22080.1\|	669		90.82	1275 bp (56.1%)	2
Description:	unnamed
arabidopsis	blastx	At5G19820.1	613	1e-175	78.88	1335 bp (58.7%)	2
Description:	Symbols: EMB2734 \| EMB2734 (EMBRYO DEFECTIVE 2734); lyase \| chr5:6695733-6701249 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
C11214_at_probe_01	PM	data not available	data not available	1
C11214_at_probe_02	PM	data not available	data not available	1
C11214_at_probe_03	PM	data not available	data not available	1
C11214_at_probe_04	PM	data not available	data not available	1
C11214_at_probe_05	PM	data not available	data not available	1
C11214_at_probe_06	PM	data not available	data not available	1
C11214_at_probe_07	PM	data not available	data not available	1
C11214_at_probe_08	PM	data not available	data not available	1
C11214_at_probe_09	PM	data not available	data not available	1
C11214_at_probe_10	PM	data not available	data not available	1
C11214_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	11.47	11.48	0.04	0.00
	TobEA vegetative shoot apex	shoot apex	8	8	11.63	11.65	0.20	0.02
	TobEA closed bud	flower bud	5	5	11.09	11.07	0.15	0.01
	TobEA open bud	flower bud	5	5	10.96	10.91	0.16	0.01
	TobEA cotyledons	cotyledon	5	5	11.16	11.22	0.24	0.02
	TobEA flower	flower	5	5	11.28	11.36	0.16	0.01
	TobEA lower stem	stem internode	5	5	12.10	12.07	0.10	0.01
	TobEA upper stem	stem internode	5	5	11.44	11.39	0.25	0.02
	TobEA cauline leaf	cauline leaf	5	5	11.16	11.13	0.12	0.01
	TobEA early senescent leaf	adult vascular leaf	5	5	11.36	11.35	0.17	0.02
	TobEA late senescent leaf	adult vascular leaf	5	5	11.98	11.99	0.29	0.02
	TobEA mature leaf	adult vascular leaf	5	5	11.82	11.85	0.16	0.01
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	11.37	11.18	0.53	0.05
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	11.76	12.12	0.59	0.05
	TobEA young leaf	juvenile vascular leaf	5	5	11.49	11.45	0.10	0.01
	TobEA mature root	root	5	5	11.96	11.98	0.05	0.00
	TobEA young root	root	6	6	11.66	11.62	0.18	0.02
	TobEA seed	seed	6	6	12.80	12.81	0.04	0.00
	TobEA young shoot	shoot system	5	5	11.21	11.20	0.06	0.01

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	11.477438	2e-4	P
	Atlas 146.CEL	11.419051	2e-4	P
	Atlas 147.CEL	11.524347	2e-4	P
	Atlas 144.CEL	11.484883	2e-4	P
	Atlas 145.CEL	11.422014	2e-4	P
TobEA vegetative shoot apex	Atlas 250.CEL	11.748153	2e-4	P
	Atlas 59.CEL	11.167957	2e-4	P
	Atlas 61.CEL	11.668382	2e-4	P
	Atlas 246.CEL	11.748961	2e-4	P
	Atlas 247.CEL	11.623422	2e-4	P
	Atlas 248.CEL	11.623796	2e-4	P
	Atlas 249.CEL	11.827614	2e-4	P
	Atlas 58.CEL	11.600955	2e-4	P
TobEA closed bud	Atlas 195.CEL	11.120344	2e-4	P
	Atlas 163.CEL	11.071531	2e-4	P
	Atlas 199.CEL	10.93485	2e-4	P
	Atlas 161.CEL	10.999964	2e-4	P
	Atlas 173.CEL	11.334185	2e-4	P
TobEA open bud	Atlas 159.CEL	10.862816	2e-4	P
	Atlas 244.CEL	10.788771	2e-4	P
	Atlas 167.CEL	10.912271	2e-4	P
	Atlas 171.CEL	11.189916	2e-4	P
	Atlas 169.CEL	11.058098	2e-4	P
TobEA cotyledons	Atlas 69.CEL	11.362953	2e-4	P
	Atlas 71.CEL	11.040814	2e-4	P
	Atlas 74.CEL	11.364661	2e-4	P
	Atlas 75.CEL	11.222833	2e-4	P
	Atlas 70.CEL	10.811324	2e-4	P
TobEA flower	Atlas 166.CEL	11.3644	2e-4	P
	Atlas 158.CEL	11.080505	2e-4	P
	Atlas 197.CEL	11.12635	2e-4	P
	Atlas 165.CEL	11.417893	2e-4	P
	Atlas 198.CEL	11.410618	2e-4	P
TobEA lower stem	Atlas 200.CEL	12.246505	2e-4	P
	Atlas 172.CEL	12.065925	2e-4	P
	Atlas 245.CEL	12.055486	2e-4	P
	Atlas 164.CEL	11.982997	2e-4	P
	Atlas 174.CEL	12.169217	2e-4	P
TobEA upper stem	Atlas 162.CEL	11.216251	2e-4	P
	Atlas 168.CEL	11.182602	2e-4	P
	Atlas 196.CEL	11.720622	2e-4	P
	Atlas 160.CEL	11.670675	2e-4	P
	Atlas 170.CEL	11.391798	2e-4	P
TobEA cauline leaf	Atlas 231.CEL	11.326242	2e-4	P
	Atlas 237.CEL	11.237838	2e-4	P
	Atlas 233.CEL	11.042331	2e-4	P
	Atlas 229.CEL	11.131676	2e-4	P
	Atlas 235.CEL	11.086411	2e-4	P
TobEA early senescent leaf	Atlas 175.CEL	11.187134	2e-4	P
	Atlas 182.CEL	11.28412	2e-4	P
	Atlas 191.CEL	11.34857	2e-4	P
	Atlas 183.CEL	11.345588	2e-4	P
	Atlas 187.CEL	11.654019	2e-4	P
TobEA late senescent leaf	Atlas 178.CEL	11.634459	2e-4	P
	Atlas 179.CEL	12.144291	2e-4	P
	Atlas 186.CEL	11.987971	2e-4	P
	Atlas 190.CEL	12.376972	2e-4	P
	Atlas 194.CEL	11.781205	2e-4	P
TobEA mature leaf	Atlas 94.CEL	11.884305	2e-4	P
	Atlas 97.CEL	11.612809	2e-4	P
	Atlas 95.CEL	11.700484	2e-4	P
	Atlas 96.CEL	12.030216	2e-4	P
	Atlas 93.CEL	11.850373	2e-4	P
TobEA mid/early senescent leaf	Atlas 192.CEL	11.049656	2e-4	P
	Atlas 176.CEL	10.845757	2e-4	P
	Atlas 184.CEL	11.175736	2e-4	P
	Atlas 188.CEL	11.6219	2e-4	P
	Atlas 181.CEL	12.172614	2e-4	P
TobEA mid/late senescent leaf	Atlas 185.CEL	12.115975	2e-4	P
	Atlas 189.CEL	12.238067	2e-4	P
	Atlas 193.CEL	11.230704	2e-4	P
	Atlas 180.CEL	12.224202	2e-4	P
	Atlas 177.CEL	11.012657	2e-4	P
TobEA young leaf	Atlas 54.CEL	11.527104	2e-4	P
	Atlas 56.CEL	11.380127	2e-4	P
	Atlas 57.CEL	11.641716	2e-4	P
	Atlas 55.CEL	11.448348	2e-4	P
	Atlas 53.CEL	11.447714	2e-4	P
TobEA mature root	Atlas 65.CEL	11.994678	2e-4	P
	Atlas 67.CEL	11.996021	2e-4	P
	Atlas 66.CEL	11.929985	2e-4	P
	Atlas 63.CEL	11.872973	2e-4	P
	Atlas 64.CEL	11.983923	2e-4	P
TobEA young root	Atlas 43.CEL	11.532166	2e-4	P
	Atlas 40.CEL	11.506898	2e-4	P
	Atlas 41.CEL	11.930329	2e-4	P
	Atlas 42.CEL	11.492402	2e-4	P
	Atlas 39.CEL	11.817767	2e-4	P
	Atlas 44.CEL	11.700014	2e-4	P
TobEA seed	Atlas 77.CEL	12.829669	2e-4	P
	Atlas 78.CEL	12.77019	2e-4	P
	Atlas 99.CEL	12.813107	2e-4	P
	Atlas 76.CEL	12.800388	2e-4	P
	Atlas 79.CEL	12.840599	2e-4	P
	Atlas 98.CEL	12.724881	2e-4	P
TobEA young shoot	Atlas 86.CEL	11.200508	2e-4	P
	Atlas 89.CEL	11.25096	2e-4	P
	Atlas 90.CEL	11.290379	2e-4	P
	Atlas 88.CEL	11.148306	2e-4	P
	Atlas 87.CEL	11.162317	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (5 templates correlated)

Template	Pearson	Internal Mapping
C2636_at	0.8757104	SGN-U444621
DW003727_at	0.851849	SGN-U499961
C11504_at	0.8262563	SGN-U451605
C1232_at	0.81958	SGN-U435857
C1232_x_at	0.8014583	SGN-U435857

Correlation Type:

Negative correlations (3 templates correlated)

Template	Pearson	Internal Mapping
CV015948_at	-0.820071	SGN-U453929
C2232_at	-0.8196515	SGN-U439780
EB431291_s_at	-0.800481	SGN-U470512

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