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Expression Template: BP534517_at

Template Basic Information

Template name:	BP534517_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U427317
External db links:	GenBank: BP534517

Annotations for unigene SGN-U427317 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15239148\|ref\|NP_196729.1\|	224	4e-57	58.94	588 bp (80.5%)	2
Description:	unknown protein [Arabidopsis thaliana] >gi7573382\|emb\|CAB87686.1\| putative protein [Arabidopsis&hellip
arabidopsis	blastx	At5G11680.1	224	3e-59	58.94	588 bp (80.5%)	2
Description:	similar to hypothetical protein TTHERM_00502170 [Tetrahymena thermophila SB210] (GB:XP_0010222&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
BP534517_at_probe_03	PM	data not available	data not available	1
BP534517_at_probe_04	PM	data not available	data not available	1
BP534517_at_probe_05	PM	data not available	data not available	1
BP534517_at_probe_06	PM	data not available	data not available	1
BP534517_at_probe_07	PM	data not available	data not available	1
BP534517_at_probe_08	PM	data not available	data not available	1
BP534517_at_probe_09	PM	data not available	data not available	1
BP534517_at_probe_10	PM	data not available	data not available	1
BP534517_at_probe_11	PM	data not available	data not available	1
BP534517_at_probe_01	PM	data not available	data not available	1
BP534517_at_probe_02	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	7.19	7.23	0.17	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	7.92	8.00	0.31	0.04
	TobEA closed bud	flower bud	5	5	7.82	7.81	0.08	0.01
	TobEA open bud	flower bud	5	5	7.85	7.85	0.11	0.01
	TobEA cotyledons	cotyledon	5	5	6.55	6.43	0.33	0.05
	TobEA flower	flower	5	5	8.47	8.49	0.21	0.02
	TobEA lower stem	stem internode	5	5	7.82	7.86	0.12	0.02
	TobEA upper stem	stem internode	5	5	8.41	8.49	0.16	0.02
	TobEA cauline leaf	cauline leaf	5	5	7.71	7.67	0.18	0.02
	TobEA early senescent leaf	adult vascular leaf	5	5	7.26	7.40	0.46	0.06
	TobEA late senescent leaf	adult vascular leaf	5	5	7.00	7.08	0.54	0.08
	TobEA mature leaf	adult vascular leaf	5	5	7.14	7.08	0.26	0.04
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	7.23	7.29	0.32	0.04
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	6.94	7.25	0.51	0.07
	TobEA young leaf	juvenile vascular leaf	5	5	7.06	7.12	0.17	0.02
	TobEA mature root	root	5	5	8.06	8.08	0.18	0.02
	TobEA young root	root	6	6	8.09	8.13	0.33	0.04
	TobEA seed	seed	6	6	6.19	6.29	0.40	0.06
	TobEA young shoot	shoot system	5	5	6.67	6.73	0.31	0.05

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	7.3844733	0.024	P
	Atlas 146.CEL	6.935854	0.024	P
	Atlas 147.CEL	7.1082053	0.011	P
	Atlas 145.CEL	7.290723	0.014	P
	Atlas 144.CEL	7.233745	0.019	P
TobEA vegetative shoot apex	Atlas 247.CEL	8.047227	0.001	P
	Atlas 248.CEL	8.105687	7e-4	P
	Atlas 249.CEL	8.411158	7e-4	P
	Atlas 59.CEL	7.740585	0.006	P
	Atlas 61.CEL	7.4855103	0.004	P
	Atlas 246.CEL	7.948954	0.008	P
	Atlas 250.CEL	8.077486	0.002	P
	Atlas 58.CEL	7.581279	0.011	P
TobEA closed bud	Atlas 163.CEL	7.7101693	0.014	P
	Atlas 161.CEL	7.787311	0.006	P
	Atlas 173.CEL	7.8084025	0.001	P
	Atlas 195.CEL	7.882743	0.002	P
	Atlas 199.CEL	7.901395	0.004	P
TobEA open bud	Atlas 244.CEL	7.808457	0.024	P
	Atlas 169.CEL	7.8545327	0.024	P
	Atlas 171.CEL	7.7289114	0.024	P
	Atlas 159.CEL	8.017392	0.006	P
	Atlas 167.CEL	7.846974	0.008	P
TobEA cotyledons	Atlas 71.CEL	7.0754724	0.038	P
	Atlas 70.CEL	6.6334047	0.095	A
	Atlas 69.CEL	6.4081926	0.024	P
	Atlas 74.CEL	6.195501	0.046	P
	Atlas 75.CEL	6.429191	0.024	P
TobEA flower	Atlas 158.CEL	8.207798	0.001	P
	Atlas 165.CEL	8.753734	7e-4	P
	Atlas 198.CEL	8.5523815	0.001	P
	Atlas 166.CEL	8.487838	7e-4	P
	Atlas 197.CEL	8.3433485	0.004	P
TobEA lower stem	Atlas 172.CEL	7.648026	0.001	P
	Atlas 174.CEL	7.930058	0.014	P
	Atlas 245.CEL	7.9083815	0.006	P
	Atlas 164.CEL	7.74699	0.019	P
	Atlas 200.CEL	7.8561454	7e-4	P
TobEA upper stem	Atlas 160.CEL	8.497818	7e-4	P
	Atlas 162.CEL	8.235671	7e-4	P
	Atlas 170.CEL	8.581433	0.001	P
	Atlas 168.CEL	8.48864	7e-4	P
	Atlas 196.CEL	8.242764	7e-4	P
TobEA cauline leaf	Atlas 229.CEL	7.669606	0.002	P
	Atlas 231.CEL	7.90068	0.002	P
	Atlas 237.CEL	7.652013	0.003	P
	Atlas 233.CEL	7.8814106	0.014	P
	Atlas 235.CEL	7.4570317	0.006	P
TobEA early senescent leaf	Atlas 175.CEL	7.3976727	0.030	P
	Atlas 182.CEL	7.6322503	0.002	P
	Atlas 183.CEL	7.5974183	0.002	P
	Atlas 191.CEL	7.180794	0.024	P
	Atlas 187.CEL	6.505258	0.024	P
TobEA late senescent leaf	Atlas 179.CEL	6.4062004	0.150	A
	Atlas 186.CEL	7.5209455	0.024	P
	Atlas 190.CEL	6.4630036	0.130	A
	Atlas 194.CEL	7.5064483	0.011	P
	Atlas 178.CEL	7.083061	0.024	P
TobEA mature leaf	Atlas 94.CEL	6.772172	0.024	P
	Atlas 97.CEL	7.405164	0.024	P
	Atlas 93.CEL	7.0554233	0.024	P
	Atlas 95.CEL	7.0838475	0.024	P
	Atlas 96.CEL	7.3678803	0.011	P
TobEA mid/early senescent leaf	Atlas 184.CEL	7.292838	0.019	P
	Atlas 188.CEL	6.784386	0.019	P
	Atlas 176.CEL	7.354816	0.011	P
	Atlas 181.CEL	7.6466126	0.002	P
	Atlas 192.CEL	7.0876274	0.006	P
TobEA mid/late senescent leaf	Atlas 177.CEL	7.26684	0.019	P
	Atlas 180.CEL	6.406771	0.024	P
	Atlas 185.CEL	7.4269586	0.006	P
	Atlas 189.CEL	6.3718524	0.095	A
	Atlas 193.CEL	7.250618	0.006	P
TobEA young leaf	Atlas 53.CEL	7.1654	0.019	P
	Atlas 56.CEL	7.2570977	0.038	P
	Atlas 55.CEL	6.8765717	0.006	P
	Atlas 57.CEL	7.1178184	0.030	P
	Atlas 54.CEL	6.876973	0.014	P
TobEA mature root	Atlas 66.CEL	8.081702	0.002	P
	Atlas 65.CEL	8.212566	0.003	P
	Atlas 63.CEL	7.7629466	0.004	P
	Atlas 64.CEL	8.027352	0.011	P
	Atlas 67.CEL	8.209201	0.002	P
TobEA young root	Atlas 40.CEL	8.458574	0.004	P
	Atlas 41.CEL	7.6590924	0.002	P
	Atlas 43.CEL	7.837854	0.006	P
	Atlas 39.CEL	8.3362055	0.004	P
	Atlas 44.CEL	8.353858	0.002	P
	Atlas 42.CEL	7.9203467	0.024	P
TobEA seed	Atlas 77.CEL	5.7093906	0.112	A
	Atlas 78.CEL	5.7058825	0.068	A
	Atlas 79.CEL	6.3103776	0.095	A
	Atlas 98.CEL	6.5924416	0.030	P
	Atlas 76.CEL	6.2609196	0.150	A
	Atlas 99.CEL	6.5773363	0.130	A
TobEA young shoot	Atlas 86.CEL	6.6070676	0.038	P
	Atlas 89.CEL	6.1781707	0.038	P
	Atlas 90.CEL	6.7265997	0.024	P
	Atlas 88.CEL	6.962419	0.056	M
	Atlas 87.CEL	6.8880496	0.056	M

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (3 templates correlated)

Template	Pearson	Internal Mapping
TT26_H05_at	0.826315	SGN-U455930
C11533_at	0.8235328	SGN-U450733
C10202_at	0.814755	SGN-U429956

Correlation Type:

Negative correlations (3 templates correlated)

Template	Pearson	Internal Mapping
C3242_at	-0.8141872	SGN-U435913
DW001601_at	-0.8108766	SGN-U435793
TT12_N20_at	-0.800565	SGN-U447405

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