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Expression Template: BP530788_s_at

Template Basic Information

Template name:	BP530788_s_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U446965
External db links:	GenBank: BP530788

Annotations for unigene SGN-U446965 (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits (or none blast was used over this dataset)
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
BP530788_s_at_probe_01	PM	data not available	data not available	1
BP530788_s_at_probe_02	PM	data not available	data not available	1
BP530788_s_at_probe_03	PM	data not available	data not available	1
BP530788_s_at_probe_04	PM	data not available	data not available	1
BP530788_s_at_probe_05	PM	data not available	data not available	1
BP530788_s_at_probe_06	PM	data not available	data not available	1
BP530788_s_at_probe_07	PM	data not available	data not available	1
BP530788_s_at_probe_08	PM	data not available	data not available	1
BP530788_s_at_probe_09	PM	data not available	data not available	1
BP530788_s_at_probe_10	PM	data not available	data not available	1
BP530788_s_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	6.56	6.55	0.42	0.06
	TobEA vegetative shoot apex	shoot apex	8	8	6.79	6.74	0.35	0.05
	TobEA closed bud	flower bud	5	5	6.86	6.90	0.26	0.04
	TobEA open bud	flower bud	5	5	6.69	6.69	0.11	0.02
	TobEA cotyledons	cotyledon	5	5	5.94	5.99	0.44	0.07
	TobEA flower	flower	5	5	6.38	6.45	0.40	0.06
	TobEA lower stem	stem internode	5	5	6.82	6.86	0.26	0.04
	TobEA upper stem	stem internode	5	5	6.22	6.17	0.48	0.08
	TobEA cauline leaf	cauline leaf	5	5	7.66	7.69	0.13	0.02
	TobEA early senescent leaf	adult vascular leaf	5	5	7.41	7.49	0.60	0.08
	TobEA late senescent leaf	adult vascular leaf	5	5	7.75	8.04	0.44	0.06
	TobEA mature leaf	adult vascular leaf	5	5	7.94	8.00	0.32	0.04
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	7.64	7.78	0.43	0.06
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	8.08	8.01	0.32	0.04
	TobEA young leaf	juvenile vascular leaf	5	5	6.55	6.60	0.13	0.02
	TobEA mature root	root	5	5	6.72	6.79	0.19	0.03
	TobEA young root	root	6	6	6.27	6.32	0.29	0.05
	TobEA seed	seed	6	6	7.42	7.42	0.27	0.04
	TobEA young shoot	shoot system	5	5	6.24	6.13	0.43	0.07

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 145.CEL	6.055375	0.008	P
	Atlas 146.CEL	6.603003	7e-4	P
	Atlas 147.CEL	7.2065163	0.003	P
	Atlas 143.CEL	6.5482283	7e-4	P
	Atlas 144.CEL	6.38874	7e-4	P
TobEA vegetative shoot apex	Atlas 246.CEL	6.6817765	0.001	P
	Atlas 250.CEL	6.7211556	7e-4	P
	Atlas 61.CEL	6.5493407	0.038	P
	Atlas 248.CEL	7.5314283	7e-4	P
	Atlas 249.CEL	6.807733	7e-4	P
	Atlas 58.CEL	6.3531237	2e-4	P
	Atlas 247.CEL	6.749551	0.003	P
	Atlas 59.CEL	6.9225073	2e-4	P
TobEA closed bud	Atlas 163.CEL	7.046288	0.004	P
	Atlas 199.CEL	7.1223526	2e-4	P
	Atlas 173.CEL	6.777874	0.006	P
	Atlas 161.CEL	6.901782	7e-4	P
	Atlas 195.CEL	6.460832	0.001	P
TobEA open bud	Atlas 244.CEL	6.5611243	7e-4	P
	Atlas 159.CEL	6.8627696	0.001	P
	Atlas 167.CEL	6.645447	7e-4	P
	Atlas 171.CEL	6.690299	7e-4	P
	Atlas 169.CEL	6.710029	0.014	P
TobEA cotyledons	Atlas 71.CEL	5.718222	0.004	P
	Atlas 69.CEL	5.988429	0.014	P
	Atlas 74.CEL	5.320659	0.001	P
	Atlas 75.CEL	6.1991415	0.001	P
	Atlas 70.CEL	6.477232	0.004	P
TobEA flower	Atlas 198.CEL	5.9051476	0.011	P
	Atlas 158.CEL	6.6067233	2e-4	P
	Atlas 166.CEL	6.8822684	0.002	P
	Atlas 197.CEL	6.446743	2e-4	P
	Atlas 165.CEL	6.0542135	0.002	P
TobEA lower stem	Atlas 200.CEL	6.4913116	0.002	P
	Atlas 174.CEL	6.864854	0.001	P
	Atlas 245.CEL	7.1834593	0.002	P
	Atlas 164.CEL	6.891865	0.006	P
	Atlas 172.CEL	6.6535463	0.006	P
TobEA upper stem	Atlas 160.CEL	6.8790045	0.001	P
	Atlas 162.CEL	6.170334	0.002	P
	Atlas 170.CEL	5.548184	0.024	P
	Atlas 196.CEL	6.398218	2e-4	P
	Atlas 168.CEL	6.126222	0.006	P
TobEA cauline leaf	Atlas 231.CEL	7.761712	7e-4	P
	Atlas 235.CEL	7.764513	2e-4	P
	Atlas 229.CEL	7.468393	2e-4	P
	Atlas 233.CEL	7.6946945	0.001	P
	Atlas 237.CEL	7.596473	7e-4	P
TobEA early senescent leaf	Atlas 183.CEL	6.734659	0.011	P
	Atlas 187.CEL	7.591346	0.019	P
	Atlas 191.CEL	6.95845	0.004	P
	Atlas 182.CEL	7.4935956	0.006	P
	Atlas 175.CEL	8.27249	7e-4	P
TobEA late senescent leaf	Atlas 179.CEL	7.2627077	0.004	P
	Atlas 186.CEL	7.270607	7e-4	P
	Atlas 190.CEL	8.055318	0.003	P
	Atlas 178.CEL	8.123235	7e-4	P
	Atlas 194.CEL	8.044739	0.001	P
TobEA mature leaf	Atlas 94.CEL	8.081687	7e-4	P
	Atlas 95.CEL	7.6067753	7e-4	P
	Atlas 96.CEL	8.38585	0.001	P
	Atlas 93.CEL	7.995622	7e-4	P
	Atlas 97.CEL	7.649316	2e-4	P
TobEA mid/early senescent leaf	Atlas 181.CEL	7.269082	0.008	P
	Atlas 192.CEL	7.913656	0.002	P
	Atlas 176.CEL	8.112324	0.001	P
	Atlas 184.CEL	7.7818346	0.002	P
	Atlas 188.CEL	7.1164193	2e-4	P
TobEA mid/late senescent leaf	Atlas 177.CEL	8.597595	0.003	P
	Atlas 185.CEL	7.7059174	7e-4	P
	Atlas 189.CEL	8.0133705	0.002	P
	Atlas 180.CEL	8.08949	0.002	P
	Atlas 193.CEL	8.011651	0.002	P
TobEA young leaf	Atlas 53.CEL	6.6847234	2e-4	P
	Atlas 56.CEL	6.3511095	7e-4	P
	Atlas 57.CEL	6.495909	7e-4	P
	Atlas 54.CEL	6.602837	2e-4	P
	Atlas 55.CEL	6.611263	2e-4	P
TobEA mature root	Atlas 63.CEL	6.872294	0.003	P
	Atlas 66.CEL	6.7455897	0.001	P
	Atlas 67.CEL	6.3863907	2e-4	P
	Atlas 64.CEL	6.812285	7e-4	P
	Atlas 65.CEL	6.7921066	2e-4	P
TobEA young root	Atlas 42.CEL	5.8585677	0.001	P
	Atlas 39.CEL	6.535186	0.003	P
	Atlas 40.CEL	6.4923525	7e-4	P
	Atlas 41.CEL	6.544017	2e-4	P
	Atlas 43.CEL	6.137715	0.014	P
	Atlas 44.CEL	6.061857	0.002	P
TobEA seed	Atlas 77.CEL	7.4259744	7e-4	P
	Atlas 79.CEL	7.3364573	0.008	P
	Atlas 98.CEL	7.86945	0.001	P
	Atlas 78.CEL	7.042871	0.002	P
	Atlas 99.CEL	7.424589	0.002	P
	Atlas 76.CEL	7.4061494	2e-4	P
TobEA young shoot	Atlas 88.CEL	6.8883824	7e-4	P
	Atlas 89.CEL	6.020742	0.006	P
	Atlas 87.CEL	6.406847	0.003	P
	Atlas 86.CEL	6.127518	2e-4	P
	Atlas 90.CEL	5.772418	0.002	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (7 templates correlated)

Template	Pearson	Internal Mapping
EB446367_at	0.8447381	SGN-U428135
C10190_at	0.8249443	SGN-U422732
C9662_at	0.817234	SGN-U433737
DV159873_at	0.8165037	SGN-U456840
C6319_at	0.8157049	SGN-U444957
TT40_N11_at	0.8060176	SGN-U441474
C253_at	0.8047374	SGN-U444237

Correlation Type:

Negative correlations (4 templates correlated)

Template	Pearson	Internal Mapping
C6504_at	-0.8319825	SGN-U468075
C9209_at	-0.8110018	SGN-U449929
C2591_at	-0.8046611	SGN-U457135
C2742_s_at	-0.8010553	SGN-U445870

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