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Expression Template: BP128406_at

Template Basic Information

Template name:	BP128406_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U429574
External db links:	GenBank: BP128406

Annotations for unigene SGN-U429574 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157336749\|emb\|CAO71434.1\|	262	4e-68	66.83	552 bp (54.1%)	-2
Description:	unnamed
arabidopsis	blastx	At4G14330.1	239	2e-63	65.15	576 bp (56.5%)	-2
Description:	phragmoplast-associated kinesin-related protein 2 (PAKRP2) \| chr4:8244224-8247282 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
BP128406_at_probe_01	PM	data not available	data not available	1
BP128406_at_probe_02	PM	data not available	data not available	1
BP128406_at_probe_03	PM	data not available	data not available	1
BP128406_at_probe_04	PM	data not available	data not available	1
BP128406_at_probe_05	PM	data not available	data not available	1
BP128406_at_probe_06	PM	data not available	data not available	1
BP128406_at_probe_07	PM	data not available	data not available	1
BP128406_at_probe_08	PM	data not available	data not available	1
BP128406_at_probe_09	PM	data not available	data not available	1
BP128406_at_probe_10	PM	data not available	data not available	1
BP128406_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	8.15	8.18	0.15	0.02
	TobEA vegetative shoot apex	shoot apex	8	8	6.19	6.50	0.97	0.16
	TobEA closed bud	flower bud	5	5	7.10	7.09	0.25	0.04
	TobEA open bud	flower bud	5	5	5.25	5.90	1.26	0.24
	TobEA cotyledons	cotyledon	5	5	3.11	2.98	1.38	0.45
	TobEA flower	flower	5	5	2.41	2.41	0.63	0.26
	TobEA lower stem	stem internode	5	5	1.66	2.15	0.91	0.54
	TobEA upper stem	stem internode	5	5	3.65	2.55	2.05	0.56
	TobEA cauline leaf	cauline leaf	5	5	2.43	2.28	1.50	0.62
	TobEA early senescent leaf	adult vascular leaf	5	5	2.11	2.04	0.72	0.34
	TobEA late senescent leaf	adult vascular leaf	5	5	3.06	3.01	0.93	0.30
	TobEA mature leaf	adult vascular leaf	5	5	1.91	1.50	1.14	0.60
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	2.27	1.22	2.19	0.96
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	2.99	2.38	1.36	0.46
	TobEA young leaf	juvenile vascular leaf	5	5	6.41	6.83	1.32	0.21
	TobEA mature root	root	5	5	5.48	5.75	0.55	0.10
	TobEA young root	root	6	6	5.15	5.22	0.68	0.13
	TobEA seed	seed	6	6	3.76	3.56	1.56	0.41
	TobEA young shoot	shoot system	5	5	4.90	5.18	0.94	0.19

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 144.CEL	7.908111	0.008	P
	Atlas 147.CEL	8.281937	0.011	P
	Atlas 145.CEL	8.250059	0.003	P
	Atlas 146.CEL	8.14621	0.008	P
	Atlas 143.CEL	8.183789	0.003	P
TobEA vegetative shoot apex	Atlas 249.CEL	6.1871095	0.056	M
	Atlas 58.CEL	6.5784273	0.056	M
	Atlas 61.CEL	6.534749	0.056	M
	Atlas 246.CEL	6.5568385	0.046	P
	Atlas 250.CEL	6.461079	0.024	P
	Atlas 59.CEL	5.7238092	0.068	A
	Atlas 247.CEL	7.3779	0.019	P
	Atlas 248.CEL	4.068732	0.266	A
TobEA closed bud	Atlas 195.CEL	7.0710077	0.019	P
	Atlas 161.CEL	7.3007903	0.024	P
	Atlas 199.CEL	6.712851	0.046	P
	Atlas 163.CEL	7.3462334	0.024	P
	Atlas 173.CEL	7.0860324	0.024	P
TobEA open bud	Atlas 159.CEL	6.0183134	0.095	A
	Atlas 169.CEL	5.9010935	0.068	A
	Atlas 244.CEL	5.961285	0.092	A
	Atlas 167.CEL	5.3423014	0.112	A
	Atlas 171.CEL	3.0516663	0.666	A
TobEA cotyledons	Atlas 70.CEL	2.5354743	0.970	A
	Atlas 74.CEL	1.2182531	0.992	A
	Atlas 75.CEL	2.9780023	0.888	A
	Atlas 71.CEL	3.9340055	0.726	A
	Atlas 69.CEL	4.8604913	0.304	A
TobEA flower	Atlas 166.CEL	1.5263809	0.905	A
	Atlas 198.CEL	2.414857	0.805	A
	Atlas 165.CEL	2.5807207	0.829	A
	Atlas 197.CEL	3.2860656	0.666	A
	Atlas 158.CEL	2.2452295	0.726	A
TobEA lower stem	Atlas 200.CEL	0.16069561	0.850	A
	Atlas 245.CEL	2.1540253	0.754	A
	Atlas 172.CEL	1.4713916	0.829	A
	Atlas 164.CEL	2.1512332	0.754	A
	Atlas 174.CEL	2.3740168	0.781	A
TobEA upper stem	Atlas 162.CEL	1.5227342	0.805	A
	Atlas 170.CEL	2.5513306	0.781	A
	Atlas 196.CEL	6.1929564	0.056	M
	Atlas 160.CEL	5.4856067	0.399	A
	Atlas 168.CEL	2.5194428	0.696	A
TobEA cauline leaf	Atlas 229.CEL	3.8601024	0.726	A
	Atlas 231.CEL	0.3689449	0.970	A
	Atlas 235.CEL	1.7428685	0.850	A
	Atlas 233.CEL	2.2763345	0.754	A
	Atlas 237.CEL	3.9023957	0.500	A
TobEA early senescent leaf	Atlas 191.CEL	1.4729809	0.981	A
	Atlas 175.CEL	2.0409214	0.919	A
	Atlas 187.CEL	2.0578916	0.989	A
	Atlas 183.CEL	3.3093393	0.754	A
	Atlas 182.CEL	1.6639662	0.970	A
TobEA late senescent leaf	Atlas 194.CEL	4.4489746	0.634	A
	Atlas 186.CEL	3.0139606	0.726	A
	Atlas 190.CEL	3.1419573	0.888	A
	Atlas 179.CEL	2.862359	0.870	A
	Atlas 178.CEL	1.8537687	0.932	A
TobEA mature leaf	Atlas 93.CEL	1.5032824	0.805	A
	Atlas 94.CEL	1.3957064	0.850	A
	Atlas 96.CEL	3.6193879	0.754	A
	Atlas 97.CEL	0.62645805	0.944	A
	Atlas 95.CEL	2.3886364	0.781	A
TobEA mid/early senescent leaf	Atlas 184.CEL	1.2210994	0.976	A
	Atlas 188.CEL	6.0881557	0.195	A
	Atlas 181.CEL	2.1248019	0.905	A
	Atlas 192.CEL	0.9168853	0.986	A
	Atlas 176.CEL	1.0044091	0.888	A
TobEA mid/late senescent leaf	Atlas 189.CEL	2.3203433	0.850	A
	Atlas 177.CEL	5.373599	0.500	A
	Atlas 185.CEL	2.0717475	0.944	A
	Atlas 193.CEL	2.7821357	0.696	A
	Atlas 180.CEL	2.3806496	0.870	A
TobEA young leaf	Atlas 54.CEL	4.1386304	0.500	A
	Atlas 55.CEL	6.5996704	0.056	M
	Atlas 53.CEL	6.9156947	0.046	P
	Atlas 56.CEL	6.8287106	0.068	A
	Atlas 57.CEL	7.5478826	0.008	P
TobEA mature root	Atlas 63.CEL	5.847418	0.081	A
	Atlas 65.CEL	5.7485704	0.056	M
	Atlas 66.CEL	4.56566	0.274	A
	Atlas 67.CEL	5.365783	0.219	A
	Atlas 64.CEL	5.8757915	0.024	P
TobEA young root	Atlas 39.CEL	5.0172644	0.219	A
	Atlas 40.CEL	5.246233	0.274	A
	Atlas 43.CEL	5.1885996	0.274	A
	Atlas 44.CEL	6.051943	0.068	A
	Atlas 42.CEL	5.422483	0.068	A
	Atlas 41.CEL	3.96507	0.304	A
TobEA seed	Atlas 77.CEL	5.4082956	0.304	A
	Atlas 98.CEL	3.0678108	0.601	A
	Atlas 78.CEL	4.055286	0.634	A
	Atlas 79.CEL	2.1619983	0.850	A
	Atlas 76.CEL	5.703429	0.334	A
	Atlas 99.CEL	2.1609428	0.805	A
TobEA young shoot	Atlas 87.CEL	5.184911	0.171	A
	Atlas 88.CEL	5.674932	0.130	A
	Atlas 89.CEL	3.2606235	0.634	A
	Atlas 86.CEL	5.158442	0.274	A
	Atlas 90.CEL	5.2115874	0.432	A

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (16 templates correlated)

Template	Pearson	Internal Mapping
BP533815_at	0.8427113	SGN-U437628
EB425401_s_at	0.8389172	SGN-U437627
C201_at	0.832125	SGN-U451231
CV017150_at	0.8316397	SGN-U501956
C9080_at	0.8289841	SGN-U430509
C8591_s_at	0.8245303	SGN-U431334
C1116_s_at	0.8229797	SGN-U448467
C3554_s_at	0.8189634	SGN-U437627
C9520_s_at	0.8155744	SGN-U450106
C4730_x_at	0.8129445	No available
AB053091_at	0.8106876	SGN-U435749
C262_at	0.8061776	SGN-U439592
C8591_x_at	0.8044092	SGN-U431334
C8186_at	0.8010864	SGN-U431333
C10925_x_at	0.801057	SGN-U447853
C1147_at	0.8001878	SGN-U428314

Correlation Type:

Negative correlations (3 templates correlated)

Template	Pearson	Internal Mapping
C5875_s_at	-0.8466102	SGN-U434214
C5875_at	-0.8367829	SGN-U434214
C1618_at	-0.827569	SGN-U434214

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