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Expression Template: AB174847_at

Template Basic Information

Template name:	AB174847_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	SGN-U438434
External db links:	GenBank: AB174847

Annotations for unigene SGN-U438434 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|45735466\|dbj\|BAD13296.1\|	947		99.6	1488 bp (93.1%)	1
Description:	putative ATPase [Nicotiana tabacum]
arabidopsis	blastx	At5G40010.1	484	6e-137	53.89	1374 bp (86.0%)	1
Description:	Symbols: AATP1 \| AATP1 (AAA-ATPASE 1); ATP binding / ATPase \| chr5:16037446-16038990 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
AB174847_at_probe_01	PM	data not available	data not available	1
AB174847_at_probe_02	PM	data not available	data not available	1
AB174847_at_probe_03	PM	data not available	data not available	1
AB174847_at_probe_04	PM	data not available	data not available	1
AB174847_at_probe_05	PM	data not available	data not available	1
AB174847_at_probe_06	PM	data not available	data not available	1
AB174847_at_probe_07	PM	data not available	data not available	1
AB174847_at_probe_08	PM	data not available	data not available	1
AB174847_at_probe_09	PM	data not available	data not available	1
AB174847_at_probe_10	PM	data not available	data not available	1
AB174847_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	9.32	9.29	0.08	0.01
	TobEA vegetative shoot apex	shoot apex	8	8	9.01	9.04	0.24	0.03
	TobEA closed bud	flower bud	5	5	9.09	9.07	0.13	0.01
	TobEA open bud	flower bud	5	5	9.23	9.20	0.06	0.01
	TobEA cotyledons	cotyledon	5	5	5.69	5.48	0.72	0.13
	TobEA flower	flower	5	5	8.17	8.23	0.14	0.02
	TobEA lower stem	stem internode	5	5	7.21	7.22	0.37	0.05
	TobEA upper stem	stem internode	5	5	8.58	8.55	0.17	0.02
	TobEA cauline leaf	cauline leaf	5	5	7.16	7.03	0.35	0.05
	TobEA early senescent leaf	adult vascular leaf	5	5	7.20	7.16	0.43	0.06
	TobEA late senescent leaf	adult vascular leaf	5	5	6.82	6.47	0.57	0.08
	TobEA mature leaf	adult vascular leaf	5	5	6.81	6.69	0.37	0.05
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	6.96	6.86	0.38	0.05
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	6.40	6.43	0.20	0.03
	TobEA young leaf	juvenile vascular leaf	5	5	8.09	8.12	0.14	0.02
	TobEA mature root	root	5	5	8.52	8.47	0.20	0.02
	TobEA young root	root	6	6	8.49	8.46	0.48	0.06
	TobEA seed	seed	6	6	6.52	6.61	0.47	0.07
	TobEA young shoot	shoot system	5	5	6.38	6.23	0.40	0.06

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 143.CEL	9.387299	2e-4	P
	Atlas 146.CEL	9.292211	2e-4	P
	Atlas 147.CEL	9.26446	2e-4	P
	Atlas 144.CEL	9.428319	2e-4	P
	Atlas 145.CEL	9.227684	7e-4	P
TobEA vegetative shoot apex	Atlas 246.CEL	9.256993	2e-4	P
	Atlas 248.CEL	8.787288	2e-4	P
	Atlas 249.CEL	9.297985	7e-4	P
	Atlas 58.CEL	8.836259	2e-4	P
	Atlas 61.CEL	8.925713	2e-4	P
	Atlas 247.CEL	9.158254	2e-4	P
	Atlas 250.CEL	9.16912	2e-4	P
	Atlas 59.CEL	8.63318	2e-4	P
TobEA closed bud	Atlas 173.CEL	9.0679	2e-4	P
	Atlas 195.CEL	9.297086	2e-4	P
	Atlas 161.CEL	8.961016	2e-4	P
	Atlas 163.CEL	9.041466	2e-4	P
	Atlas 199.CEL	9.078103	2e-4	P
TobEA open bud	Atlas 167.CEL	9.193053	2e-4	P
	Atlas 159.CEL	9.291794	2e-4	P
	Atlas 169.CEL	9.162864	7e-4	P
	Atlas 171.CEL	9.286744	2e-4	P
	Atlas 244.CEL	9.204548	2e-4	P
TobEA cotyledons	Atlas 70.CEL	5.2397923	0.030	P
	Atlas 71.CEL	6.376355	0.081	A
	Atlas 75.CEL	6.5047965	0.008	P
	Atlas 69.CEL	5.478629	0.008	P
	Atlas 74.CEL	4.855291	0.150	A
TobEA flower	Atlas 158.CEL	7.976836	2e-4	P
	Atlas 165.CEL	8.225176	2e-4	P
	Atlas 166.CEL	8.242899	2e-4	P
	Atlas 197.CEL	8.0752945	2e-4	P
	Atlas 198.CEL	8.308102	2e-4	P
TobEA lower stem	Atlas 172.CEL	6.8989773	0.002	P
	Atlas 200.CEL	6.830029	7e-4	P
	Atlas 245.CEL	7.7293034	2e-4	P
	Atlas 164.CEL	7.361207	2e-4	P
	Atlas 174.CEL	7.2188706	2e-4	P
TobEA upper stem	Atlas 160.CEL	8.379512	2e-4	P
	Atlas 162.CEL	8.490366	2e-4	P
	Atlas 168.CEL	8.629864	2e-4	P
	Atlas 170.CEL	8.553385	2e-4	P
	Atlas 196.CEL	8.832787	2e-4	P
TobEA cauline leaf	Atlas 229.CEL	7.4283814	7e-4	P
	Atlas 231.CEL	6.823375	2e-4	P
	Atlas 235.CEL	7.025258	2e-4	P
	Atlas 233.CEL	7.621656	2e-4	P
	Atlas 237.CEL	6.901884	2e-4	P
TobEA early senescent leaf	Atlas 175.CEL	6.672589	7e-4	P
	Atlas 187.CEL	7.739343	2e-4	P
	Atlas 191.CEL	7.4928336	2e-4	P
	Atlas 182.CEL	6.9219723	7e-4	P
	Atlas 183.CEL	7.1570554	2e-4	P
TobEA late senescent leaf	Atlas 178.CEL	7.4885974	2e-4	P
	Atlas 186.CEL	6.2837296	0.001	P
	Atlas 194.CEL	7.388385	2e-4	P
	Atlas 179.CEL	6.4683757	0.011	P
	Atlas 190.CEL	6.4588065	0.002	P
TobEA mature leaf	Atlas 93.CEL	6.599708	2e-4	P
	Atlas 94.CEL	7.260882	2e-4	P
	Atlas 96.CEL	6.694887	2e-4	P
	Atlas 97.CEL	7.1334214	2e-4	P
	Atlas 95.CEL	6.3733883	2e-4	P
TobEA mid/early senescent leaf	Atlas 176.CEL	6.6907554	2e-4	P
	Atlas 184.CEL	6.6859465	2e-4	P
	Atlas 192.CEL	6.9329123	7e-4	P
	Atlas 188.CEL	7.608042	7e-4	P
	Atlas 181.CEL	6.8643794	0.003	P
TobEA mid/late senescent leaf	Atlas 185.CEL	6.427774	0.008	P
	Atlas 180.CEL	6.065147	0.046	P
	Atlas 189.CEL	6.5501995	0.001	P
	Atlas 177.CEL	6.537123	7e-4	P
	Atlas 193.CEL	6.3950357	2e-4	P
TobEA young leaf	Atlas 56.CEL	7.961097	2e-4	P
	Atlas 54.CEL	8.131065	2e-4	P
	Atlas 57.CEL	8.29226	2e-4	P
	Atlas 53.CEL	7.9483976	2e-4	P
	Atlas 55.CEL	8.122415	7e-4	P
TobEA mature root	Atlas 65.CEL	8.471909	2e-4	P
	Atlas 66.CEL	8.371865	2e-4	P
	Atlas 63.CEL	8.378533	2e-4	P
	Atlas 64.CEL	8.540629	2e-4	P
	Atlas 67.CEL	8.858987	2e-4	P
TobEA young root	Atlas 39.CEL	8.406325	2e-4	P
	Atlas 41.CEL	7.9821744	7e-4	P
	Atlas 42.CEL	8.520103	2e-4	P
	Atlas 40.CEL	8.622375	2e-4	P
	Atlas 43.CEL	8.088945	2e-4	P
	Atlas 44.CEL	9.321951	2e-4	P
TobEA seed	Atlas 77.CEL	7.0838623	2e-4	P
	Atlas 78.CEL	6.562326	2e-4	P
	Atlas 98.CEL	6.660043	2e-4	P
	Atlas 99.CEL	6.194635	0.006	P
	Atlas 76.CEL	5.789651	0.008	P
	Atlas 79.CEL	6.84102	2e-4	P
TobEA young shoot	Atlas 89.CEL	6.232357	0.019	P
	Atlas 90.CEL	7.095673	7e-4	P
	Atlas 86.CEL	6.194908	0.024	P
	Atlas 88.CEL	6.258643	7e-4	P
	Atlas 87.CEL	6.1333547	7e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (24 templates correlated)

Template	Pearson	Internal Mapping
C1788_s_at	0.8760274	SGN-U467202
C6156_at	0.8665635	SGN-U432662
DW004537_at	0.8584685	SGN-U448157
GC301_s_at	0.8466034	No available
EB430912_s_at	0.8414895	SGN-U428708
C9977_at	0.836257	SGN-U443818
DV158147_s_at	0.8355502	SGN-U432171
TT12_M23_at	0.832372	SGN-U465029
C5447_at	0.8292982	SGN-U442164
C2826_x_at	0.8247213	SGN-U432537
C2826_at	0.8234124	SGN-U432537
C4793_s_at	0.822007	SGN-U444821
EB680558_s_at	0.8187669	SGN-U449028
EB446467_at	0.81774	No available
EB683366_at	0.8121269	SGN-U473248
CV020782_s_at	0.8111121	SGN-U429691
DW002182_at	0.8099702	SGN-U425183
C9981_s_at	0.8071711	SGN-U439770
C4197_at	0.8023311	SGN-U445677
C366_at	0.801717	SGN-U447846
EB447799_at	0.801183	SGN-U433989
TT49_D18_at	0.8009042	SGN-U453170
C7147_s_at	0.8004981	SGN-U446728
C3489_at	0.8004006	SGN-U442375

Correlation Type:

Negative correlations (11 templates correlated)

Template	Pearson	Internal Mapping
C10810_at	-0.8706011	SGN-U437649
BP532283_at	-0.8594523	SGN-U431053
EB431491_s_at	-0.8591616	SGN-U462418
C6996_s_at	-0.853477	SGN-U437649
C779_at	-0.8457381	SGN-U448553
C4887_at	-0.8317691	SGN-U448553
C2177_at	-0.8277742	SGN-U436767
C779_s_at	-0.820351	SGN-U448553
C11239_at	-0.8048366	SGN-U433369
C5240_at	-0.8041705	SGN-U422743
C1948_at	-0.8021687	SGN-U431182

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