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Expression Template: BC3M1413_at

Template Basic Information

Template name:	BC3M1413_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	data not available
External db links:	GenBank: BC3M1413

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
BC3M1413_at_probe_01	PM	data not available	data not available	1
BC3M1413_at_probe_02	PM	data not available	data not available	1
BC3M1413_at_probe_03	PM	data not available	data not available	1
BC3M1413_at_probe_04	PM	data not available	data not available	1
BC3M1413_at_probe_05	PM	data not available	data not available	1
BC3M1413_at_probe_06	PM	data not available	data not available	1
BC3M1413_at_probe_07	PM	data not available	data not available	1
BC3M1413_at_probe_08	PM	data not available	data not available	1
BC3M1413_at_probe_09	PM	data not available	data not available	1
BC3M1413_at_probe_10	PM	data not available	data not available	1
BC3M1413_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	7.57	7.57	0.20	0.03
	TobEA vegetative shoot apex	shoot apex	8	8	7.60	7.61	0.27	0.04
	TobEA closed bud	flower bud	5	5	8.16	8.19	0.20	0.02
	TobEA open bud	flower bud	5	5	9.09	9.16	0.27	0.03
	TobEA cotyledons	cotyledon	5	5	7.58	7.43	0.44	0.06
	TobEA flower	flower	5	5	9.22	9.28	0.41	0.04
	TobEA lower stem	stem internode	5	5	8.06	8.14	0.25	0.03
	TobEA upper stem	stem internode	5	5	8.29	8.60	0.81	0.10
	TobEA cauline leaf	cauline leaf	5	5	8.16	8.15	0.28	0.03
	TobEA early senescent leaf	adult vascular leaf	5	5	8.71	8.76	0.28	0.03
	TobEA late senescent leaf	adult vascular leaf	5	5	9.61	9.59	0.05	0.01
	TobEA mature leaf	adult vascular leaf	5	5	8.89	8.88	0.27	0.03
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	9.02	8.96	0.36	0.04
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	8.90	8.84	0.29	0.03
	TobEA young leaf	juvenile vascular leaf	5	5	7.11	7.03	0.22	0.03
	TobEA mature root	root	5	5	8.82	8.77	0.14	0.02
	TobEA young root	root	6	6	9.72	9.82	0.32	0.03
	TobEA seed	seed	6	6	8.53	8.53	0.21	0.02
	TobEA young shoot	shoot system	5	5	7.45	7.48	0.19	0.02

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 146.CEL	7.749899	0.004	P
	Atlas 145.CEL	7.34092	0.008	P
	Atlas 143.CEL	7.574753	0.002	P
	Atlas 144.CEL	7.785417	0.002	P
	Atlas 147.CEL	7.402662	0.006	P
TobEA vegetative shoot apex	Atlas 246.CEL	7.7061086	0.001	P
	Atlas 249.CEL	7.924188	0.001	P
	Atlas 247.CEL	7.563906	0.002	P
	Atlas 58.CEL	7.327496	0.001	P
	Atlas 248.CEL	7.5553513	0.002	P
	Atlas 250.CEL	7.927356	0.002	P
	Atlas 59.CEL	7.1275506	0.002	P
	Atlas 61.CEL	7.6586094	0.008	P
TobEA closed bud	Atlas 163.CEL	8.192644	7e-4	P
	Atlas 173.CEL	7.9817505	0.004	P
	Atlas 161.CEL	8.35488	7e-4	P
	Atlas 195.CEL	7.939329	0.002	P
	Atlas 199.CEL	8.348291	0.001	P
TobEA open bud	Atlas 169.CEL	8.860626	7e-4	P
	Atlas 171.CEL	9.31814	7e-4	P
	Atlas 159.CEL	8.762515	7e-4	P
	Atlas 167.CEL	9.353722	7e-4	P
	Atlas 244.CEL	9.162627	7e-4	P
TobEA cotyledons	Atlas 70.CEL	7.3041334	0.011	P
	Atlas 75.CEL	8.029022	0.002	P
	Atlas 69.CEL	7.0732665	0.006	P
	Atlas 74.CEL	8.062015	0.001	P
	Atlas 71.CEL	7.430714	0.008	P
TobEA flower	Atlas 198.CEL	8.941843	7e-4	P
	Atlas 197.CEL	8.730553	0.002	P
	Atlas 158.CEL	9.276665	7e-4	P
	Atlas 165.CEL	9.77853	7e-4	P
	Atlas 166.CEL	9.38019	7e-4	P
TobEA lower stem	Atlas 164.CEL	8.162268	0.002	P
	Atlas 174.CEL	7.6214113	0.004	P
	Atlas 200.CEL	8.142946	0.001	P
	Atlas 172.CEL	8.27595	7e-4	P
	Atlas 245.CEL	8.105233	0.003	P
TobEA upper stem	Atlas 160.CEL	7.4525414	0.011	P
	Atlas 170.CEL	8.596186	0.001	P
	Atlas 162.CEL	9.268767	7e-4	P
	Atlas 196.CEL	7.447421	0.004	P
	Atlas 168.CEL	8.676478	0.001	P
TobEA cauline leaf	Atlas 235.CEL	7.887559	7e-4	P
	Atlas 229.CEL	8.148412	0.001	P
	Atlas 231.CEL	7.9978604	0.001	P
	Atlas 237.CEL	8.614126	0.001	P
	Atlas 233.CEL	8.162352	7e-4	P
TobEA early senescent leaf	Atlas 182.CEL	8.755564	7e-4	P
	Atlas 175.CEL	8.43378	0.002	P
	Atlas 183.CEL	8.411281	0.002	P
	Atlas 187.CEL	8.903714	2e-4	P
	Atlas 191.CEL	9.024052	7e-4	P
TobEA late senescent leaf	Atlas 178.CEL	9.571683	7e-4	P
	Atlas 186.CEL	9.696671	7e-4	P
	Atlas 190.CEL	9.58884	2e-4	P
	Atlas 194.CEL	9.559179	2e-4	P
	Atlas 179.CEL	9.610161	7e-4	P
TobEA mature leaf	Atlas 93.CEL	9.015947	7e-4	P
	Atlas 94.CEL	9.2610855	2e-4	P
	Atlas 95.CEL	8.877471	7e-4	P
	Atlas 96.CEL	8.597085	7e-4	P
	Atlas 97.CEL	8.6769495	7e-4	P
TobEA mid/early senescent leaf	Atlas 181.CEL	9.166836	7e-4	P
	Atlas 188.CEL	9.569392	2e-4	P
	Atlas 192.CEL	8.959339	7e-4	P
	Atlas 176.CEL	8.714729	7e-4	P
	Atlas 184.CEL	8.693789	0.001	P
TobEA mid/late senescent leaf	Atlas 185.CEL	9.015348	7e-4	P
	Atlas 189.CEL	8.555826	0.001	P
	Atlas 193.CEL	9.31185	7e-4	P
	Atlas 177.CEL	8.754845	0.001	P
	Atlas 180.CEL	8.839197	7e-4	P
TobEA young leaf	Atlas 53.CEL	6.8983846	0.008	P
	Atlas 56.CEL	7.1841826	0.011	P
	Atlas 54.CEL	6.958968	0.011	P
	Atlas 57.CEL	7.457727	0.003	P
	Atlas 55.CEL	7.029788	0.014	P
TobEA mature root	Atlas 65.CEL	8.770347	7e-4	P
	Atlas 63.CEL	8.865709	7e-4	P
	Atlas 64.CEL	8.682171	0.001	P
	Atlas 67.CEL	9.03678	2e-4	P
	Atlas 66.CEL	8.723133	7e-4	P
TobEA young root	Atlas 40.CEL	10.007062	2e-4	P
	Atlas 41.CEL	9.756289	7e-4	P
	Atlas 44.CEL	9.160147	7e-4	P
	Atlas 39.CEL	9.5572195	7e-4	P
	Atlas 42.CEL	9.939323	2e-4	P
	Atlas 43.CEL	9.886164	2e-4	P
TobEA seed	Atlas 77.CEL	8.650576	0.004	P
	Atlas 78.CEL	8.406223	7e-4	P
	Atlas 79.CEL	8.404076	0.003	P
	Atlas 98.CEL	8.672841	0.002	P
	Atlas 99.CEL	8.781485	0.002	P
	Atlas 76.CEL	8.238144	0.003	P
TobEA young shoot	Atlas 90.CEL	7.477061	0.006	P
	Atlas 86.CEL	7.1694345	0.014	P
	Atlas 87.CEL	7.628661	0.014	P
	Atlas 88.CEL	7.5961566	0.004	P
	Atlas 89.CEL	7.382787	0.003	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (14 templates correlated)

Template	Pearson	Internal Mapping
C1493_at	0.8829957	SGN-U430430
DW002216_at	0.8512244	SGN-U424291
C7812_at	0.8343841	SGN-U433530
DW001794_at	0.8249819	SGN-U431727
C6040_at	0.8245596	No available
C10148_at	0.8208484	SGN-U436492
TT37_C20_at	0.8170863	SGN-U436492
C1070_at	0.8139083	SGN-U434384
BP535496_at	0.8134629	SGN-U443910
C8095_at	0.812358	SGN-U433798
C8911_at	0.8080975	SGN-U446016
C1771_at	0.8072352	SGN-U440674
C8213_at	0.8066798	SGN-U447408
DW004271_at	0.8047965	SGN-U443626

Correlation Type:

Negative correlations (3 templates correlated)

Template	Pearson	Internal Mapping
C2982_at	-0.8601328	SGN-U424423
C11631_at	-0.8130615	No available
TT19_J21_at	-0.8001466	SGN-U432007

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