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Expression Template: BC2M1426_at

Template Basic Information

Template name:	BC2M1426_at
Template type:	Probe Set
Platform:	Affymetrix TobEA
Internal db links:	data not available
External db links:	GenBank: BC2M1426

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
BC2M1426_at_probe_01	PM	data not available	data not available	1
BC2M1426_at_probe_02	PM	data not available	data not available	1
BC2M1426_at_probe_03	PM	data not available	data not available	1
BC2M1426_at_probe_04	PM	data not available	data not available	1
BC2M1426_at_probe_05	PM	data not available	data not available	1
BC2M1426_at_probe_06	PM	data not available	data not available	1
BC2M1426_at_probe_07	PM	data not available	data not available	1
BC2M1426_at_probe_08	PM	data not available	data not available	1
BC2M1426_at_probe_09	PM	data not available	data not available	1
BC2M1426_at_probe_10	PM	data not available	data not available	1
BC2M1426_at_probe_11	PM	data not available	data not available	1

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (19)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
TobEA	TobEA floral shoot apex	shoot apex	5	5	7.56	7.40	0.30	0.04
	TobEA vegetative shoot apex	shoot apex	8	8	6.62	6.64	0.45	0.07
	TobEA closed bud	flower bud	5	5	7.40	7.36	0.31	0.04
	TobEA open bud	flower bud	5	5	7.14	7.20	0.28	0.04
	TobEA cotyledons	cotyledon	5	5	6.47	6.45	0.48	0.07
	TobEA flower	flower	5	5	7.72	7.70	0.15	0.02
	TobEA lower stem	stem internode	5	5	7.66	7.65	0.21	0.03
	TobEA upper stem	stem internode	5	5	7.36	7.33	0.18	0.02
	TobEA cauline leaf	cauline leaf	5	5	7.07	7.05	0.18	0.03
	TobEA early senescent leaf	adult vascular leaf	5	5	7.57	7.50	0.39	0.05
	TobEA late senescent leaf	adult vascular leaf	5	5	8.48	8.46	0.31	0.04
	TobEA mature leaf	adult vascular leaf	5	5	7.76	7.92	0.30	0.04
	TobEA mid/early senescent leaf	adult vascular leaf	5	5	7.92	7.88	0.52	0.07
	TobEA mid/late senescent leaf	adult vascular leaf	5	5	8.06	7.82	0.43	0.05
	TobEA young leaf	juvenile vascular leaf	5	5	6.49	6.85	1.05	0.16
	TobEA mature root	root	5	5	7.69	7.76	0.16	0.02
	TobEA young root	root	6	6	6.44	6.41	0.32	0.05
	TobEA seed	seed	6	6	7.92	7.90	0.17	0.02
	TobEA young shoot	shoot system	5	5	6.52	6.43	0.31	0.05

Expression Data by Targets (experiment replicates) (100)

Experiment name	Target name	normalized_signal	pVal_call	flag
TobEA floral shoot apex	Atlas 146.CEL	7.7923026	0.002	P
	Atlas 144.CEL	7.346614	7e-4	P
	Atlas 145.CEL	7.9639683	2e-4	P
	Atlas 143.CEL	7.397006	0.001	P
	Atlas 147.CEL	7.278221	2e-4	P
TobEA vegetative shoot apex	Atlas 248.CEL	6.072735	0.056	M
	Atlas 58.CEL	6.138805	0.024	P
	Atlas 59.CEL	6.251633	0.014	P
	Atlas 247.CEL	7.1571865	0.002	P
	Atlas 246.CEL	7.099289	0.001	P
	Atlas 249.CEL	6.9510546	0.001	P
	Atlas 250.CEL	6.8677692	7e-4	P
	Atlas 61.CEL	6.4109716	0.002	P
TobEA closed bud	Atlas 163.CEL	7.850541	7e-4	P
	Atlas 199.CEL	7.2579284	0.003	P
	Atlas 161.CEL	7.530653	0.002	P
	Atlas 173.CEL	7.020457	0.003	P
	Atlas 195.CEL	7.364284	0.002	P
TobEA open bud	Atlas 244.CEL	7.195406	0.006	P
	Atlas 159.CEL	6.6591477	0.006	P
	Atlas 167.CEL	7.3728585	2e-4	P
	Atlas 171.CEL	7.2943044	0.001	P
	Atlas 169.CEL	7.1563783	0.006	P
TobEA cotyledons	Atlas 70.CEL	6.0304875	0.081	A
	Atlas 75.CEL	6.0058937	0.334	A
	Atlas 71.CEL	6.4470234	0.068	A
	Atlas 69.CEL	7.123963	0.004	P
	Atlas 74.CEL	6.7667556	0.011	P
TobEA flower	Atlas 198.CEL	7.6953535	2e-4	P
	Atlas 158.CEL	7.6126595	2e-4	P
	Atlas 166.CEL	7.538949	0.002	P
	Atlas 197.CEL	7.830864	2e-4	P
	Atlas 165.CEL	7.9045916	2e-4	P
TobEA lower stem	Atlas 164.CEL	7.651089	7e-4	P
	Atlas 174.CEL	7.5019107	0.002	P
	Atlas 245.CEL	7.492525	2e-4	P
	Atlas 172.CEL	7.998935	2e-4	P
	Atlas 200.CEL	7.6490426	2e-4	P
TobEA upper stem	Atlas 160.CEL	7.146393	0.004	P
	Atlas 170.CEL	7.329295	2e-4	P
	Atlas 196.CEL	7.2381134	0.008	P
	Atlas 162.CEL	7.525854	0.001	P
	Atlas 168.CEL	7.5523424	7e-4	P
TobEA cauline leaf	Atlas 231.CEL	7.052977	0.002	P
	Atlas 233.CEL	7.1279635	7e-4	P
	Atlas 229.CEL	6.8392673	7e-4	P
	Atlas 237.CEL	6.997701	0.011	P
	Atlas 235.CEL	7.3351116	0.002	P
TobEA early senescent leaf	Atlas 182.CEL	7.448671	0.008	P
	Atlas 175.CEL	7.07898	2e-4	P
	Atlas 183.CEL	7.6468143	0.003	P
	Atlas 187.CEL	8.145929	2e-4	P
	Atlas 191.CEL	7.5047517	0.004	P
TobEA late senescent leaf	Atlas 178.CEL	8.532769	7e-4	P
	Atlas 186.CEL	8.038756	2e-4	P
	Atlas 190.CEL	8.915145	7e-4	P
	Atlas 194.CEL	8.464963	2e-4	P
	Atlas 179.CEL	8.4526415	2e-4	P
TobEA mature leaf	Atlas 93.CEL	7.497821	7e-4	P
	Atlas 97.CEL	7.9211802	2e-4	P
	Atlas 96.CEL	7.9450035	7e-4	P
	Atlas 94.CEL	7.377967	0.001	P
	Atlas 95.CEL	8.034875	0.002	P
TobEA mid/early senescent leaf	Atlas 192.CEL	7.883357	2e-4	P
	Atlas 181.CEL	8.441896	2e-4	P
	Atlas 184.CEL	7.344143	0.002	P
	Atlas 188.CEL	8.45466	0.002	P
	Atlas 176.CEL	7.4735675	0.004	P
TobEA mid/late senescent leaf	Atlas 185.CEL	7.71728	0.011	P
	Atlas 189.CEL	8.401617	0.002	P
	Atlas 180.CEL	7.8196564	0.003	P
	Atlas 193.CEL	8.641091	2e-4	P
	Atlas 177.CEL	7.715782	0.004	P
TobEA young leaf	Atlas 55.CEL	6.514753	0.014	P
	Atlas 56.CEL	7.1489515	0.004	P
	Atlas 53.CEL	6.8498178	0.001	P
	Atlas 54.CEL	4.680858	0.219	A
	Atlas 57.CEL	7.2578034	0.004	P
TobEA mature root	Atlas 67.CEL	7.8670526	2e-4	P
	Atlas 64.CEL	7.7576632	2e-4	P
	Atlas 65.CEL	7.7732944	7e-4	P
	Atlas 63.CEL	7.590474	2e-4	P
	Atlas 66.CEL	7.4787345	7e-4	P
TobEA young root	Atlas 39.CEL	6.0104656	0.081	A
	Atlas 43.CEL	6.641018	0.003	P
	Atlas 40.CEL	6.380577	2e-4	P
	Atlas 44.CEL	6.941193	0.008	P
	Atlas 41.CEL	6.2335653	0.003	P
	Atlas 42.CEL	6.443172	2e-4	P
TobEA seed	Atlas 77.CEL	7.800279	2e-4	P
	Atlas 78.CEL	8.098345	0.001	P
	Atlas 76.CEL	8.099931	0.001	P
	Atlas 79.CEL	7.7720666	7e-4	P
	Atlas 98.CEL	7.998755	0.002	P
	Atlas 99.CEL	7.738167	0.002	P
TobEA young shoot	Atlas 87.CEL	7.047578	0.019	P
	Atlas 88.CEL	6.297259	2e-4	P
	Atlas 86.CEL	6.4309306	0.056	M
	Atlas 90.CEL	6.5211554	0.019	P
	Atlas 89.CEL	6.2914715	2e-4	P

Correlation analysis (1)

Correlation Analisis ID:	1
Methodology:	Pearson Correlation Analysis
Description:	This correlation analysis was made using R software and loaded into the SGN database with a cutoff value of 0.8

Correlation Type:

Possitive correlations (9 templates correlated)

Template	Pearson	Internal Mapping
EB442306_at	0.8402656	SGN-U452090
EB439504_s_at	0.8333958	SGN-U450295
EB439586_at	0.8313505	SGN-U450430
C8761_s_at	0.8228637	SGN-U423114
EB441038_at	0.819646	SGN-U445298
C361_at	0.8106507	SGN-U431787
TT29_F18_at	0.8104335	SGN-U423672
EB440579_at	0.8050758	SGN-U443797
C4915_s_at	0.8001906	SGN-U421181

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