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Unigene SGN-U206753

Unigene Basic Information

Unigene ID:	SGN-U206753
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	206753
mRNA sequence:	Length: 438 bp

>SGN-U206753 Solanum melongena #2 (1 members)
TTTTTTTTTTTTTTTTTTTTTAATTAAACAGATCCTTTCTAAATGATCGCAACGTCTTCAATCCAAAAGCAAGGAACAAAGCCCCTTGCA
ATAGCTTTTTGAAAAAAGAATTCAAATATAGAACTGAAAATCAAAACTTTGGTACTTAATGACAGGAACAATGACATTGCAAACACAATG
CAACACTCAATGCAACTCTAGGACTGCCTGTTCCTCTTCTTCACGCCAGACTTGGCAACCTTGAGGCTCCTGTTCACAGCACTCAATCTT
GCAAGGGCAGCCTTCTTCAGGTCTGGCCTGTAATAGTTGTCTGCGACCTGGTTTGTTACTGCCTTGGCCATGCGGCGGAACTCCTTCTTC
ATTACAGATTTGTTCAGCAAACTTGAAGGTTCGTTCTGCTTCTTGGGCTTTGTTGTAGCAAGCAACACAGATTGATCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E515615
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15224835\|ref\|NP_179563.1\|	119	1.3e-26	72.15	237 bp (54.1%)	-2
Description:	60S ribosomal protein L28 (RPL28A) [Arabidopsis thaliana] >gi79322493\|ref\|NP_001031374.1\| 60S r…
arabidopsis	blastx	At2g19730.1	119	8.7e-28	72.15	237 bp (54.1%)	-2
Description:	At2g19730.1 68409.m02095 60S ribosomal protein L28 (RPL28A)
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0005840 ribosome
GO:0005622 intracellular
GO:0006412 protein biosynthesis
GO:0003735 structural constituent of ribosome

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P209188 (83 Aa)

RSICVACYNKAQEAERTFKFAEQICNEEGVPPHGQGSNKPGRRQLLQARPEEGCPCKIECCEQEPQGCQVWREEEEQAVLELH

SignalP predicts non-secretion with a score of 0.031

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30312 (79 Aa)

RSICVACYNKAQEAERTFKFAEQICNEEGVPPMAKAVTNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQS

SignalP predicts non-secretion with a score of 0.037

IPR002672 Ribosomal L28e protein

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1002	Ribosomal_L28e	19
2	22831	Ribosomal_L28e	19
5	56980	Ribosomal_L28e	19
1.1	102250	Ribosomal L28e protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	18
2	119253	Ribosomal L28e protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	18
5	129597	Ribosomal L28e protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	18

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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