EST details — SGN-E394646
| Search information |
| Request: 394646 | Match: SGN-E394646 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183709 | Clone name: TUS-42-O3 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183709 is on microarray TOM1 spot ID 1-1-6.3.1.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C25105 [cLEE-1-M17] | Trace: SGN-T58447 | EST: SGN-E243998 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C25105 [cLEE-1-M17] | Trace: SGN-T58448 | EST: SGN-E243999 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C183709 [TUS-42-O3] | Trace: SGN-T195503 | EST: SGN-E394177 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183709 [TUS-42-O3] | Trace: SGN-T195972 | EST: SGN-E399197 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183709 [TUS-42-O3] | Trace: SGN-T200258 | EST: SGN-E399196 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394646 | Length: 683 bp (827 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394646 [] (trimmed)
AAGGTGACAAAAGGAAAATAGTAATTTTCATAGTAAAGAGAGAGAAAAACAAAACAAAGACACATGTAAGAATTTAATCATTACAACTTAGAACA
TTGATAGACATTAATTATTGTAATACATAAATCTAAAAACCAGAAGGATCGATTCACGTGAACTCATATATCCCCTTCTTAGTAAATCTAGTTGC
CCGCGAACGCGGCAGCCCCTGTAGCCACTGCACCTACTAAAGTAGCTGCAATTTGAGCTATATTAACTTTGTTATTGTAATCCTTTGATGGTGAT
GAGTCCATAACTATTAATTTATCACTTAGCACACTTGAATACATCAAAGTCCCAAAATTTGAACCACTCCTATCCACTACACAAGTGTTACATGA
TCTTGGACTTTGAGAATCTAGACTAAGGTTTACTTCACCAACATATTTATCGCGCGACAAACTCCTCTTACAAATCAATTCGATTTTAACATAAA
TTTTACCTTGTGCTTGTATGATATTGTATTCTGGCACGATGAACGTAAACATCTTGTTCCACTCAGGATTTATGCTTTTCACAAGATCCGGTTCT
GTACACTCACTCTTTCCTGCTATTGAAACCTTTGCATAAACTTTCATTTCTCCAAATTTTCGAACATTTATGAGATTACTAGCAGAATGAACCGT
AAAACATAAACATCTTGC
TTGATAGACATTAATTATTGTAATACATAAATCTAAAAACCAGAAGGATCGATTCACGTGAACTCATATATCCCCTTCTTAGTAAATCTAGTTGC
CCGCGAACGCGGCAGCCCCTGTAGCCACTGCACCTACTAAAGTAGCTGCAATTTGAGCTATATTAACTTTGTTATTGTAATCCTTTGATGGTGAT
GAGTCCATAACTATTAATTTATCACTTAGCACACTTGAATACATCAAAGTCCCAAAATTTGAACCACTCCTATCCACTACACAAGTGTTACATGA
TCTTGGACTTTGAGAATCTAGACTAAGGTTTACTTCACCAACATATTTATCGCGCGACAAACTCCTCTTACAAATCAATTCGATTTTAACATAAA
TTTTACCTTGTGCTTGTATGATATTGTATTCTGGCACGATGAACGTAAACATCTTGTTCCACTCAGGATTTATGCTTTTCACAAGATCCGGTTCT
GTACACTCACTCTTTCCTGCTATTGAAACCTTTGCATAAACTTTCATTTCTCCAAATTTTCGAACATTTATGAGATTACTAGCAGAATGAACCGT
AAAACATAAACATCTTGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394646] | SGN-U585669 | Tomato 200607 | Build 2 | 10 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195972 [Download][View] | Facility Assigned ID: FA0AAD30AH02RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.947 | Expected Error Rate: 0.0029 | Quality Trim Threshold: 12.5 |
Working
