SGN Marker CT130

SGN-M472

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
900
Vector
pBLUESC
Cutting Site
EcoR1
Drug Resistance
AMP
Image
CT130 RFLP image
Forward sequence
CAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCCGCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTC
GGTTCTCCATGTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCTCAGCCCCCGGAGATTTTGGATTTGATCCAC
TTGGTTTAGGAGAAGTACCTGCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGCTATGCTTGCTGTTCCCGGAA
TCATAGTACCAGAGGCATTGGGCTTAGGTAATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACATATTTGGGCC
AGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTATTGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAG
ATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTT
Reverse sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCAAAAAGCCCCTTCCCTTAAAAATCT
TTTAATACCTGGGAAAATTTTACAAGGGGTTTTTGGCTAATATACTATATGAAAAAAAATCCCATTTAATTAGGGAAAATGCCTTTAGGG
AAAAAAACCCCCCCCATGTTTTTGTGCCCTGGGCCACCCAAAGGAATTCCCAAATTCCCCAAGGGGCCCGTTCCCGGAAATGCTGATTGT
TGTACCCAAAATCCCCCAAATGCCAACAATGCAAAACAACCCTTCTTGATTTCCTTGACTTTGAGTTCTTCAAATTTAACAGGGGCTTTA
AAAAACCCCAATGGGGCAAAACCCCCCCCAGGGGACTTCTTCTTTTCTGAATCTTTTTCCCAACCCCTTTGGGGTTCCACAAAAGCTTTG
GCTAAAAATTCCATACCCCAA
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1436341.7e-2297 (20.0% of RFLP seq)+
SGN-U143632485 (100.0% of RFLP seq)+
SGN-U143633482 (99.4% of RFLP seq)+
SGN-U1436339.1e-49197 (41.8% of RFLP seq)-
SGN-U1436324.5e-66386 (82.0% of RFLP seq)-
SGN-U1436341e-100404 (85.8% of RFLP seq)-
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38971)
Chromosome
5
Position
115.00 cM
Confidence
I
Protocol
RFLP


Tomato-EXPEN 2000

Map: Tomato-EXPEN 1992   
Map version
28 (location: 9239)
Chromosome
5
Position
94.20 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992
Overgo hybridization and physical mapping 
CT130 was used as an overgo probe on plate 5 [well B7]

Plausible BAC Matches:   P282A16,   P043C17,   P081A17,   P141A12,   P257N09,   P111I14,   P072D12,   P142D04,   P117A21,   P239D11,   P215N15,   P261K13

 Overgo Sequences

A sequence
AACTCCATGTCTCGGTTCTCCATG
B sequence
GCATCCAATCAGCTGACATGGAGA
AB sequence
AACTCCATGTCTCGGTTCTCCATGTCAGCT
Marker sequence
CAGCTGTTTGCCCCTCTTTCCTCTCTTCTACCAAGTCCAAATTCGCCGCC
GCGATGCCGGTGTCCGTTGGAGCTACCAACTCCATGTCTCGGTTCTCCAT
GTCAGCTGATTGGATGCCCGGGCAGCCCCGTCCATCTTACCTCGACGGCT
CAGCCCCCGGAGATTTTGGATTTGATCCACTTGGTTTAGGAGAAGTACCT
GCAAATTTGGAAAGATACAAAGAATCTGAACTTATTCATTGCAGATGGGC
TATGCTTGCTGTTCCCGGAATCATAGTACCAGAGGCATTGGGCTTAGGTA
ATTGGGTCAAGGCCCAAGAATGGGCAGCCATTCCTGGTGGACAAGCTACA
TATTTGGGCCAGCCTGTTCCATGGGGAACACTTCCTACTATTTTGGCTAT
TGAATTTCTAGCCATAGCTTTTGTAGAACACCAAAGGAGTATGGAAAAAG
ATTCAGAAAAGAAGAAGTACCCTGGTGGGGCTTTT
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of CT130  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D472 marker 472
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