Clone Read LE_HBa0186F09_T7_65921

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0186F09_T7_65921
Primer
T7
ID from Seq. Facility
LE_HBa_186_F09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
736 trimmed for vector and quality, 852 raw
Genbank Accession
DU075193
Sequence
>LE_HBa0186F09_T7_65921 (raw untrimmed)
TCGGTTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTAGATCAACCGTTAAATTATGCCCTAATTTATTTGCCTGATTTAATTCCAAT
AGACGTAAAACCCGTTATTTATCTTGATTCTGACATAGTCATTGTTGATGACATTGTTAAATTATGGCAAGTTGATCTTGGTGACAAAGTGTTAGCTGCT
CCTGAATATTGTCAAGCAAATTTCACAACTTATTTCACAGACACATTTTGGGATGATTCTGAATTAGCTAAAACATTTCATGGTAGAAAGCCATGTTATT
TTAACACAGGTGTTATGATTGTTGATGTTGATAAATGGAGATGTGGAAATTACACACAAAAGGTTGAAGATTGGATGGTTATACAAAAGCAAAAAAGGAT
ATATCACTTAGGTTCTTTACCACCTTTTTTGTTAACCCTAGCTGGGGATATTACCCCTGTTGATCATAGATGGAATCAACATGGATTAGGTGGTGATAAT
ATTGAAGGAAAGTGTAGGAGTTTGCATCCTGGTCCTATTAGTTTATTACATTGGAGTGGTAAAGGTAAACCATGGTTAAGATTGGATTCAAGAAAACCAT
GTACTGTTGATCATTTATGGGCTCCTTACGATCTCCTATCGTTCATCGAGGCATTTCATTCGACGAATAATGCATGCTGAAGAAGCAGTTTAAAATTTTA
CCTTCTTTGTTACTATCGAACAACCAATTGTATGAACCGGGGTTTCATAATTTTATTATTAATTGAAATTTTTAGTGGGATCTTGGCGGTAAAAATGAAT
TTCCCGATCCAATTTGAACTTTAAATTTAATCTTATAATGAATTTGTGTTAA
>LE_HBa0186F09_T7_65921 (trimmed for quality and cloning vector)
AGCTTTAGATCAACCGTTAAATTATGCCCTAATTTATTTGCCTGATTTAATTCCAATAGACGTAAAACCCGTTATTTATCTTGATTCTGACATAGTCATT
GTTGATGACATTGTTAAATTATGGCAAGTTGATCTTGGTGACAAAGTGTTAGCTGCTCCTGAATATTGTCAAGCAAATTTCACAACTTATTTCACAGACA
CATTTTGGGATGATTCTGAATTAGCTAAAACATTTCATGGTAGAAAGCCATGTTATTTTAACACAGGTGTTATGATTGTTGATGTTGATAAATGGAGATG
TGGAAATTACACACAAAAGGTTGAAGATTGGATGGTTATACAAAAGCAAAAAAGGATATATCACTTAGGTTCTTTACCACCTTTTTTGTTAACCCTAGCT
GGGGATATTACCCCTGTTGATCATAGATGGAATCAACATGGATTAGGTGGTGATAATATTGAAGGAAAGTGTAGGAGTTTGCATCCTGGTCCTATTAGTT
TATTACATTGGAGTGGTAAAGGTAAACCATGGTTAAGATTGGATTCAAGAAAACCATGTACTGTTGATCATTTATGGGCTCCTTACGATCTCCTATCGTT
CATCGAGGCATTTCATTCGACGAATAATGCATGCTGAAGAAGCAGTTTAAAATTTTACCTTCTTTGTTACTATCGAACAACCAATTGTATGAACCGGGGT
TTCATAATTTTATTATTAATTGAAATTTTTAGTGGG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.946877
Expected error %
1.48007
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g06260.1 Score 288 E Value 3e-78 Identity 22.50% Align. Length 590bp (80.16%) Frame 3
68416.m00719 galactinol synthase, putative contains Pfam profile: PF01501 glycosyl transferase family 8
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g13250.1 Score 261 E Value 4e-70 Identity 19.80% Align. Length 599bp (81.39%) Frame 3
68414.m01538 glycosyl transferase family 8 protein contains Pfam profile: PF01501 Glycosyl transferase family 8
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF30319.1| Score 288 E Value 1e-76 Identity 22.50% Align. Length 590bp (80.16%) Frame 3
putative glycosyl transferase [Arabidopsis thaliana] ref|NP_187277.1| galactinol synthase, putative [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_479332.1| Score 273 E Value 3e-72 Identity 21.30% Align. Length 590bp (80.16%) Frame 3
putative glycosyltransferase [Oryza sativa (japonica cultivar-group)] dbj|BAC06990.1| putative glycosyltransferase [Oryza sativa (japonica cultivar-group)] dbj|BAD31451.1| putative glycosyltransferase [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0186F09
Clone
Clone name
hba-186f9
LE_HBa0186F09
P186F09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found