#Draft Tomato chromosome 3
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr3	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr3	50001	107227	2	F	C03HBa0020P05.1	1	57227	+
S.lycopersicum-chr3	107228	3000000	3	N	2892773	contig	no	
S.lycopersicum-chr3	3000001	3110892	4	F	C03HBa0137K15.1	1	110892	+
S.lycopersicum-chr3	3110893	7200000	5	N	4089108	contig	no	
S.lycopersicum-chr3	7200001	7334937	6	F	C03HBa0007J09.1	1	134937	+
S.lycopersicum-chr3	7334938	7480000	7	N	145063	contig	no	
S.lycopersicum-chr3	7480001	7606965	8	F	C03HBa0127K18.1	1	126965	+
S.lycopersicum-chr3	7606966	9200000	9	N	1593035	contig	no	
S.lycopersicum-chr3	9200001	9282956	10	F	C03HBa0040F22.1	1	82956	+
S.lycopersicum-chr3	9282957	9332956	11	N	50000	clone	yes	
S.lycopersicum-chr3	9332957	9466026	12	F	C03SLm0100M07.1	1	133070	+
S.lycopersicum-chr3	9466027	9600000	13	N	133974	contig	no	
S.lycopersicum-chr3	9600001	9621926	14	F	C03HBa0191E01.1	1	21926	+
S.lycopersicum-chr3	9621927	9671926	15	N	50000	contig	no	
S.lycopersicum-chr3	9671927	9837775	16	F	C03HBa0054O21.1	1	165849	+
S.lycopersicum-chr3	9837776	10500000	17	N	662225	contig	no	
S.lycopersicum-chr3	10500001	10617727	18	F	C03HBa0233O20.1	1	117727	+
S.lycopersicum-chr3	10617728	10667727	19	N	50000	contig	no	
S.lycopersicum-chr3	10667728	10749172	20	F	C03HBa0036B17.1	1	81445	+
S.lycopersicum-chr3	10749173	11000000	21	N	250828	contig	no	
S.lycopersicum-chr3	11000001	11114286	22	F	C03HBa0318C22.1	1	114286	+
S.lycopersicum-chr3	11114287	12300000	23	N	1185714	contig	no	
S.lycopersicum-chr3	12300001	12402153	24	F	C03HBa0323D22.1	1	102153	+
S.lycopersicum-chr3	12402154	13300000	25	N	897847	contig	no	
S.lycopersicum-chr3	13300001	13413681	26	F	C03HBa0012D06.1	1	113681	+
S.lycopersicum-chr3	13413682	13480544	27	F	C03SLe0090P17.1	36739	103601	-
S.lycopersicum-chr3	13480545	13700000	28	N	219456	contig	no	
S.lycopersicum-chr3	13700001	13826477	29	F	C03HBa0034B23.2	1	126477	+
S.lycopersicum-chr3	13826478	13876477	30	N	50000	contig	no	
S.lycopersicum-chr3	13876478	13999793	31	F	C03HBa0033A22.1	1	123316	+
S.lycopersicum-chr3	13999794	14100000	32	N	100207	contig	no	
S.lycopersicum-chr3	14100001	14244864	33	F	C03HBa0029M12.1	1	144864	+
S.lycopersicum-chr3	14244865	16000000	34	N	1755136	contig	no	
S.lycopersicum-chr3	16000001	16119102	35	F	C03HBa0001E24.1	1	119102	+
S.lycopersicum-chr3	16119103	16400000	36	N	280898	contig	no	
S.lycopersicum-chr3	16400001	16431852	37	F	C03HBa0295I12.1	1	31852	+
S.lycopersicum-chr3	16431853	16700000	38	N	268148	contig	no	
S.lycopersicum-chr3	16700001	16855537	39	F	C03HBa0224P23.1	1	155537	+
S.lycopersicum-chr3	16855538	16905537	40	N	50000	contig	no	
S.lycopersicum-chr3	16905538	17096450	41	F	C03HBa0143N09.1	1	190913	+
S.lycopersicum-chr3	17096451	17146450	42	N	50000	contig	no	
S.lycopersicum-chr3	17146451	17266405	43	F	C03HBa0030O03.1	1	119955	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr3	17266406	60000000	44	N	42733595	contig	no	
S.lycopersicum-chr3	60000001	60111774	45	F	C03HBa0031O24.1	1	111774	+
S.lycopersicum-chr3	60111775	60161774	46	N	50000	contig	no	
S.lycopersicum-chr3	60161775	60227186	47	F	C03HBa0065A22.1	1	65412	+
S.lycopersicum-chr3	60227187	60277186	48	N	50000	contig	no	
S.lycopersicum-chr3	60277187	60383273	49	F	C03HBa0140L21.1	1	106087	+
S.lycopersicum-chr3	60383274	60433273	50	N	50000	contig	no	
S.lycopersicum-chr3	60433274	60555613	51	F	C03HBa0066J09.1	1	122340	+
S.lycopersicum-chr3	60555614	60605613	52	N	50000	contig	no	
S.lycopersicum-chr3	60605614	60748121	53	F	C03HBa0052G03.1	1	142508	+
S.lycopersicum-chr3	60748122	60798121	54	N	50000	contig	no	
S.lycopersicum-chr3	60798122	60824020	55	F	C03HBa0088L10.1	1	25899	+
S.lycopersicum-chr3	60824021	60874020	56	N	50000	contig	no	
S.lycopersicum-chr3	60874021	60881047	57	F	C03HBa0001G02.1	1	7027	+
S.lycopersicum-chr3	60881048	60931047	58	N	50000	contig	no	
S.lycopersicum-chr3	60931048	60939781	59	F	C03HBa0192B12.1	1	8734	+
S.lycopersicum-chr3	60939782	60989781	60	N	50000	contig	no	
S.lycopersicum-chr3	60989782	61110583	61	F	C03HBa0030F10.1	1	120802	+
S.lycopersicum-chr3	61110584	61160583	62	N	50000	contig	no	
S.lycopersicum-chr3	61160584	61265773	63	F	C03SLe0011K13.1	1	105190	+