#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	212185	2	F	C02HBa0323C04.2	1	162185	+
S.lycopersicum-chr2	212186	262185	3	N	50000	contig	no	
S.lycopersicum-chr2	262186	393732	4	F	C02HBa0007F24.3	1	131547	+
S.lycopersicum-chr2	393733	1300000	5	N	906268	contig	no	
S.lycopersicum-chr2	1300001	1433000	6	F	C02HBa0303I24.2	1	133000	+
S.lycopersicum-chr2	1433001	1600000	7	N	167000	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1925139	10	F	C02HBa0025N15.2	1	125139	+
S.lycopersicum-chr2	1925140	1975139	11	N	50000	contig	no	
S.lycopersicum-chr2	1975140	2119251	12	F	C02HBa0190N21.2	1	144112	+
S.lycopersicum-chr2	2119252	2169251	13	N	50000	contig	no	
S.lycopersicum-chr2	2169252	2283747	14	F	C02HBa0280E02.2	1	114496	+
S.lycopersicum-chr2	2283748	2333747	15	N	50000	contig	no	
S.lycopersicum-chr2	2333748	2455506	16	F	C02HBa0107I05.1	1	121759	+
S.lycopersicum-chr2	2455507	2505506	17	N	50000	contig	no	
S.lycopersicum-chr2	2505507	2640055	18	F	C02HBa0209K17.2	1	134549	+
S.lycopersicum-chr2	2640056	3300000	19	N	659945	contig	no	
S.lycopersicum-chr2	3300001	3417181	20	F	C02HBa0025A22.2	1	117181	+
S.lycopersicum-chr2	3417182	3600000	21	N	182819	contig	no	
S.lycopersicum-chr2	3600001	3717515	22	F	C02HBa0101G09.1	1	117515	+
S.lycopersicum-chr2	3717516	3767515	23	N	50000	clone	yes	
S.lycopersicum-chr2	3767516	3903839	24	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	3903840	3953839	25	N	50000	contig	no	
S.lycopersicum-chr2	3953840	4072151	26	F	C02HBa0155C04.3	1	118312	+
S.lycopersicum-chr2	4072152	4122151	27	N	50000	contig	no	
S.lycopersicum-chr2	4122152	4245335	28	F	C02HBa0162I09.2	1	123184	-
S.lycopersicum-chr2	4245336	4369986	29	F	C02HBa0027B01.1	10001	134651	+
S.lycopersicum-chr2	4369987	4419986	30	N	50000	contig	no	
S.lycopersicum-chr2	4419987	4527318	31	F	C02HBa0168N10.2	1	107332	+
S.lycopersicum-chr2	4527319	4600000	32	N	72682	contig	no	
S.lycopersicum-chr2	4600001	4720889	33	F	C02HBa0072A04.2	1	120889	-
S.lycopersicum-chr2	4720890	4832831	34	F	C02HBa0066C13.2	24227	136168	+
S.lycopersicum-chr2	4832832	7000000	35	N	2167169	contig	no	
S.lycopersicum-chr2	7000001	7138260	36	F	C02HBa0329G05.3	1	138260	+
S.lycopersicum-chr2	7138261	7188260	37	N	50000	clone	yes	
S.lycopersicum-chr2	7188261	7268579	38	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	7268580	7318579	39	N	50000	contig	no	
S.lycopersicum-chr2	7318580	7365465	40	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7365466	7415465	41	N	50000	contig	no	
S.lycopersicum-chr2	7415466	7658093	42	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7658094	7708093	43	N	50000	contig	no	
S.lycopersicum-chr2	7708094	7823101	44	F	C02HBa0059M17.3	1	115008	+
S.lycopersicum-chr2	7823102	7894384	45	F	C02HBa0323A14.2	57047	128329	+
S.lycopersicum-chr2	7894385	7944384	46	N	50000	contig	no	
S.lycopersicum-chr2	7944385	8124254	47	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8124255	8174254	48	N	50000	contig	no	
S.lycopersicum-chr2	8174255	8255653	49	F	C02HBa0044O16.1	1	81399	+
S.lycopersicum-chr2	8255654	8269284	50	F	C02SLm0021D12.1	76800	90430	+
S.lycopersicum-chr2	8269285	8318288	51	F	C02SLm0073G04.1	40082	89085	-
S.lycopersicum-chr2	8318289	8368288	52	N	50000	contig	no	
S.lycopersicum-chr2	8368289	8504083	53	F	C02HBa0165K22.1	1	135795	-
S.lycopersicum-chr2	8504084	8583432	54	F	C02SLm0049G16.2	35692	115040	+
S.lycopersicum-chr2	8583433	8633432	55	N	50000	clone	yes	
S.lycopersicum-chr2	8633433	8789322	56	F	C02HBa0320D04.2	1	155890	+
S.lycopersicum-chr2	8789323	8901306	57	F	C02HBa0111M05.1	32722	144705	+
S.lycopersicum-chr2	8901307	8924994	58	F	C02HBa0175O20.1	122540	146227	-
S.lycopersicum-chr2	8924995	9002444	59	F	C02HBa0144P17.1	15143	92592	+
S.lycopersicum-chr2	9002445	9052444	60	N	50000	contig	no	
S.lycopersicum-chr2	9052445	9192377	61	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	9192378	9242377	62	N	50000	contig	no	
S.lycopersicum-chr2	9242378	9378616	63	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	9378617	9428616	64	N	50000	contig	no	
S.lycopersicum-chr2	9428617	9579042	65	F	C02HBa0060J03.2	1	150426	+
S.lycopersicum-chr2	9579043	9629042	66	N	50000	clone	yes	
S.lycopersicum-chr2	9629043	9758639	67	F	C02HBa0159F19.2	1	129597	+
S.lycopersicum-chr2	9758640	9808639	68	N	50000	contig	no	
S.lycopersicum-chr2	9808640	9920713	69	F	C02HBa0009K06.2	1	112074	+
S.lycopersicum-chr2	9920714	9970713	70	N	50000	contig	no	
S.lycopersicum-chr2	9970714	10016297	71	F	C02HBa0213A01.2	1	45584	+
S.lycopersicum-chr2	10016298	10066297	72	N	50000	contig	no	
S.lycopersicum-chr2	10066298	10168069	73	F	C02HBa0030A21.2	1	101772	-
S.lycopersicum-chr2	10168070	10225754	74	F	C02HBa0074A14.2	52672	110356	+
S.lycopersicum-chr2	10225755	10317720	75	F	C02HBa0215M12.1	67801	159766	+
S.lycopersicum-chr2	10317721	10367720	76	N	50000	contig	no	
S.lycopersicum-chr2	10367721	10481449	77	F	C02HBa0164H08.1	1	113729	+
S.lycopersicum-chr2	10481450	10531449	78	N	50000	contig	no	
S.lycopersicum-chr2	10531450	10643493	79	F	C02SLe0010E18.1	1	112044	+
S.lycopersicum-chr2	10643494	10712743	80	F	C02HBa0134G09.1	54590	123839	-
S.lycopersicum-chr2	10712744	10840020	81	F	C02HBa0180C05.1	20927	148203	+
S.lycopersicum-chr2	10840021	10890020	82	N	50000	contig	no	
S.lycopersicum-chr2	10890021	11093038	83	F	C02SLe0123B22.1	1	203018	+
S.lycopersicum-chr2	11093039	11143038	84	N	50000	clone	yes	
S.lycopersicum-chr2	11143039	11278857	85	F	C02HBa0011A02.3	1	135819	+
S.lycopersicum-chr2	11278858	11328857	86	N	50000	clone	yes	
S.lycopersicum-chr2	11328858	11460633	87	F	C02HBa0236E02.1	1	131776	+
S.lycopersicum-chr2	11460634	11526746	88	F	C02SLm0014P22.2	13385	79497	+
S.lycopersicum-chr2	11526747	11576746	89	N	50000	clone	yes	
S.lycopersicum-chr2	11576747	11673897	90	F	C02SLm0065M14.2	1	97151	-
S.lycopersicum-chr2	11673898	11768931	91	F	C02HBa0016A12.2	19544	114577	+
S.lycopersicum-chr2	11768932	11854549	92	F	C02HBa0190P16.1	9835	95452	+
S.lycopersicum-chr2	11854550	11931073	93	F	C02HBa0031A13.1	12582	89105	-
S.lycopersicum-chr2	11931074	11981073	94	N	50000	contig	no	
S.lycopersicum-chr2	11981074	12068736	95	F	C02HBa0124N09.1	1	87663	+
S.lycopersicum-chr2	12068737	12118736	96	N	50000	clone	yes	
S.lycopersicum-chr2	12118737	12261538	97	F	C02HBa0236E08.1	1	142802	+
S.lycopersicum-chr2	12261539	12311538	98	N	50000	contig	no	
S.lycopersicum-chr2	12311539	12447115	99	F	C02HBa0046M08.2	1	135577	+
S.lycopersicum-chr2	12447116	12497115	100	N	50000	contig	no	
S.lycopersicum-chr2	12497116	12604848	101	F	C02SLe0033D19.2	1	107733	+
S.lycopersicum-chr2	12604849	12658326	102	F	C02HBa0111M10.2	54012	107489	+
S.lycopersicum-chr2	12658327	12720134	103	F	C02HBa0008G02.1	85199	147006	-
S.lycopersicum-chr2	12720135	12768358	104	F	C02SLm0066K03.2	74853	123076	-
S.lycopersicum-chr2	12768359	12883248	105	F	C02HBa0226F10.1	17208	132097	+
S.lycopersicum-chr2	12883249	12933248	106	N	50000	contig	no	
S.lycopersicum-chr2	12933249	12990572	107	F	C02HBa0104A12.1	1	57324	+
S.lycopersicum-chr2	12990573	13040572	108	N	50000	contig	no	
S.lycopersicum-chr2	13040573	13171593	109	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	13171594	13950000	110	N	778407	contig	no	
S.lycopersicum-chr2	13950001	14082204	111	F	C02HBa0064B17.3	1	132204	+
S.lycopersicum-chr2	14082205	14164788	112	F	C02SLm0055O24.2	12197	94780	-
S.lycopersicum-chr2	14164789	14214788	113	N	50000	contig	no	
S.lycopersicum-chr2	14214789	14337449	114	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	14337450	14447451	115	F	C02HBa0072B02.3	5378	115379	+
S.lycopersicum-chr2	14447452	14497451	116	N	50000	contig	no	
S.lycopersicum-chr2	14497452	14606045	117	F	C02HBa0032J10.4	1	108594	+
S.lycopersicum-chr2	14606046	14656045	118	N	50000	clone	yes	
S.lycopersicum-chr2	14656046	14806473	119	F	C02HBa0177F12.3	1	150428	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14806474	60000000	120	N	45193527	contig	no	
S.lycopersicum-chr2	60000001	60087832	121	F	C02SLm0057H03.1	1	87832	+
S.lycopersicum-chr2	60087833	60137832	122	N	50000	contig	no	
S.lycopersicum-chr2	60137833	60235882	123	F	C02SLm0064E19.2	1	98050	+
S.lycopersicum-chr2	60235883	60285882	124	N	50000	contig	no	
S.lycopersicum-chr2	60285883	60396081	125	F	C02SLe0042D07.2	1	110199	+
S.lycopersicum-chr2	60396082	60446081	126	N	50000	contig	no	
S.lycopersicum-chr2	60446082	60508246	127	F	C02HBa0185P07.1	1	62165	+
S.lycopersicum-chr2	60508247	60558246	128	N	50000	contig	no	
S.lycopersicum-chr2	60558247	60677747	129	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	60677748	60727747	130	N	50000	contig	no	
S.lycopersicum-chr2	60727748	60886059	131	F	C02SLm0132H19.1	1	158312	+
S.lycopersicum-chr2	60886060	60936059	132	N	50000	contig	no	
S.lycopersicum-chr2	60936060	61008316	133	F	C02HBa0257H21.2	1	72257	+
S.lycopersicum-chr2	61008317	61058316	134	N	50000	contig	no	
S.lycopersicum-chr2	61058317	61167103	135	F	C02SLm0042B19.2	1	108787	+
S.lycopersicum-chr2	61167104	61217103	136	N	50000	contig	no	
S.lycopersicum-chr2	61217104	61250722	137	F	C02HBa0214B22.1	1	33619	+
S.lycopersicum-chr2	61250723	61300722	138	N	50000	contig	no	
S.lycopersicum-chr2	61300723	61375855	139	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	61375856	61425855	140	N	50000	contig	no	
S.lycopersicum-chr2	61425856	61464722	141	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	61464723	61514722	142	N	50000	contig	no	
S.lycopersicum-chr2	61514723	61624781	143	F	C02SLm0006E22.1	1	110059	+
S.lycopersicum-chr2	61624782	61674781	144	N	50000	contig	no	
S.lycopersicum-chr2	61674782	61799517	145	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	61799518	61849517	146	N	50000	contig	no	
S.lycopersicum-chr2	61849518	61933548	147	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	61933549	61983548	148	N	50000	contig	no	
S.lycopersicum-chr2	61983549	62107980	149	F	C02SLm0100F12.1	1	124432	+
S.lycopersicum-chr2	62107981	62157980	150	N	50000	contig	no	
S.lycopersicum-chr2	62157981	62272740	151	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	62272741	62322740	152	N	50000	contig	no	
S.lycopersicum-chr2	62322741	62465045	153	F	C02HBa0189G15.1	1	142305	+
S.lycopersicum-chr2	62465046	62515045	154	N	50000	contig	no	
S.lycopersicum-chr2	62515046	62644033	155	F	C02SLe0054B08.1	1	128988	+
S.lycopersicum-chr2	62644034	62694033	156	N	50000	contig	no	
S.lycopersicum-chr2	62694034	62843437	157	F	C02HBa0115F06.1	1	149404	+
S.lycopersicum-chr2	62843438	62893437	158	N	50000	contig	no	
S.lycopersicum-chr2	62893438	63008720	159	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	63008721	63058720	160	N	50000	contig	no	
S.lycopersicum-chr2	63058721	63170618	161	F	C02HBa0054K23.1	1	111898	+
S.lycopersicum-chr2	63170619	63220618	162	N	50000	contig	no	
S.lycopersicum-chr2	63220619	63311969	163	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	63311970	63361969	164	N	50000	contig	no	
S.lycopersicum-chr2	63361970	63453548	165	F	C02SLe0011K05.1	1	91579	+
S.lycopersicum-chr2	63453549	63503548	166	N	50000	contig	no	
S.lycopersicum-chr2	63503549	63574943	167	F	C02SLm0045L06.2	1	71395	+
S.lycopersicum-chr2	63574944	63624943	168	N	50000	contig	no	
S.lycopersicum-chr2	63624944	63746934	169	F	C02HBa0044J01.1	1	121991	+
S.lycopersicum-chr2	63746935	63796934	170	N	50000	contig	no	
S.lycopersicum-chr2	63796935	63911931	171	F	C02SLe0065H17.1	1	114997	+
S.lycopersicum-chr2	63911932	63961931	172	N	50000	contig	no	
S.lycopersicum-chr2	63961932	64056441	173	F	C02SLe0075O22.1	1	94510	+
S.lycopersicum-chr2	64056442	64106441	174	N	50000	contig	no	
S.lycopersicum-chr2	64106442	64189772	175	F	C02SLm0065K08.2	1	83331	+
S.lycopersicum-chr2	64189773	64239772	176	N	50000	contig	no	
S.lycopersicum-chr2	64239773	64368526	177	F	C02SLm0020N19.2	1	128754	+
S.lycopersicum-chr2	64368527	64418526	178	N	50000	contig	no	
S.lycopersicum-chr2	64418527	64531318	179	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	64531319	64581318	180	N	50000	contig	no	
S.lycopersicum-chr2	64581319	64671997	181	F	C02SLe0016P15.1	1	90679	+
S.lycopersicum-chr2	64671998	64721997	182	N	50000	contig	no	
S.lycopersicum-chr2	64721998	64862265	183	F	C02HBa0172G12.1	1	140268	+
S.lycopersicum-chr2	64862266	64912265	184	N	50000	contig	no	
S.lycopersicum-chr2	64912266	65074382	185	F	C02SLm0127N23.1	1	162117	+
S.lycopersicum-chr2	65074383	65124382	186	N	50000	contig	no	
S.lycopersicum-chr2	65124383	65247057	187	F	C02HBa0160F05.2	1	122675	+
S.lycopersicum-chr2	65247058	65297057	188	N	50000	contig	no	
S.lycopersicum-chr2	65297058	65359518	189	F	C02HBa0138P10.1	1	62461	+
S.lycopersicum-chr2	65359519	65409518	190	N	50000	contig	no	
S.lycopersicum-chr2	65409519	65533999	191	F	C02SLm0100O21.2	1	124481	+
S.lycopersicum-chr2	65534000	65583999	192	N	50000	contig	no	
S.lycopersicum-chr2	65584000	65651404	193	F	C02HBa0223O24.1	1	67405	+
S.lycopersicum-chr2	65651405	65701404	194	N	50000	contig	no	
S.lycopersicum-chr2	65701405	65836684	195	F	C02HBa0023N04.3	1	135280	+
S.lycopersicum-chr2	65836685	65886684	196	N	50000	contig	no	
S.lycopersicum-chr2	65886685	65998200	197	F	C02HBa0091J18.1	1	111516	+
S.lycopersicum-chr2	65998201	66048200	198	N	50000	contig	no	
S.lycopersicum-chr2	66048201	66199362	199	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	66199363	66249362	200	N	50000	contig	no	
S.lycopersicum-chr2	66249363	66339156	201	F	C02SLm0064G08.1	1	89794	+
S.lycopersicum-chr2	66339157	66389156	202	N	50000	contig	no	
S.lycopersicum-chr2	66389157	66535076	203	F	C02HBa0090O01.2	1	145920	+
S.lycopersicum-chr2	66535077	66585076	204	N	50000	contig	no	
S.lycopersicum-chr2	66585077	66700661	205	F	C02HBa0155D20.2	1	115585	+
S.lycopersicum-chr2	66700662	66791636	206	F	C02SLe0053H21.1	56220	147194	-
S.lycopersicum-chr2	66791637	66841636	207	N	50000	contig	no	
S.lycopersicum-chr2	66841637	66940128	208	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	66940129	67095343	209	F	C02HBa0155E05.2	3844	159058	+
S.lycopersicum-chr2	67095344	67145343	210	N	50000	contig	no	
S.lycopersicum-chr2	67145344	67284121	211	F	C02HBa0161P02.1	1	138778	-
S.lycopersicum-chr2	67284122	67316527	212	F	C02HBa0031A21.2	100249	132654	+
S.lycopersicum-chr2	67316528	67366527	213	N	50000	contig	no	
S.lycopersicum-chr2	67366528	67490605	214	F	C02HBa0146O16.1	1	124078	-
S.lycopersicum-chr2	67490606	67544625	215	F	C02HBa0030E13.1	56662	110681	+
S.lycopersicum-chr2	67544626	67594625	216	N	50000	contig	no	
S.lycopersicum-chr2	67594626	67712354	217	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	67712355	67762354	218	N	50000	clone	yes	
S.lycopersicum-chr2	67762355	67887693	219	F	C02SLe0031D11.1	1	125339	+
S.lycopersicum-chr2	67887694	67937693	220	N	50000	contig	no	
S.lycopersicum-chr2	67937694	68048575	221	F	C02HBa0116F10.1	1	110882	+
S.lycopersicum-chr2	68048576	68098575	222	N	50000	clone	yes	
S.lycopersicum-chr2	68098576	68278479	223	F	C02SLm0128E12.1	1	179904	+
S.lycopersicum-chr2	68278480	68302145	224	F	C02HBa0106H06.1	81643	105308	+
S.lycopersicum-chr2	68302146	68305930	225	F	C02SLm0097L01.2	33780	37564	-