#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	181547	2	F	C02HBa0007F24.3	1	131547	+
S.lycopersicum-chr2	181548	231547	3	N	50000	contig	no	
S.lycopersicum-chr2	231548	393732	4	F	C02HBa0323C04.2	1	162185	+
S.lycopersicum-chr2	393733	1300000	5	N	906268	contig	no	
S.lycopersicum-chr2	1300001	1433000	6	F	C02HBa0303I24.2	1	133000	+
S.lycopersicum-chr2	1433001	1600000	7	N	167000	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1925139	10	F	C02HBa0025N15.2	1	125139	+
S.lycopersicum-chr2	1925140	1975139	11	N	50000	contig	no	
S.lycopersicum-chr2	1975140	2119251	12	F	C02HBa0190N21.2	1	144112	+
S.lycopersicum-chr2	2119252	2169251	13	N	50000	contig	no	
S.lycopersicum-chr2	2169252	2283747	14	F	C02HBa0280E02.2	1	114496	+
S.lycopersicum-chr2	2283748	2333747	15	N	50000	contig	no	
S.lycopersicum-chr2	2333748	2455506	16	F	C02HBa0107I05.1	1	121759	+
S.lycopersicum-chr2	2455507	2505506	17	N	50000	contig	no	
S.lycopersicum-chr2	2505507	2640055	18	F	C02HBa0209K17.2	1	134549	+
S.lycopersicum-chr2	2640056	3300000	19	N	659945	contig	no	
S.lycopersicum-chr2	3300001	3417181	20	F	C02HBa0025A22.2	1	117181	+
S.lycopersicum-chr2	3417182	3600000	21	N	182819	contig	no	
S.lycopersicum-chr2	3600001	3717515	22	F	C02HBa0101G09.1	1	117515	+
S.lycopersicum-chr2	3717516	3767515	23	N	50000	clone	yes	
S.lycopersicum-chr2	3767516	3903839	24	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	3903840	3953839	25	N	50000	contig	no	
S.lycopersicum-chr2	3953840	4072151	26	F	C02HBa0155C04.3	1	118312	+
S.lycopersicum-chr2	4072152	4122151	27	N	50000	contig	no	
S.lycopersicum-chr2	4122152	4245335	28	F	C02HBa0162I09.2	1	123184	-
S.lycopersicum-chr2	4245336	4369986	29	F	C02HBa0027B01.1	10001	134651	+
S.lycopersicum-chr2	4369987	4419986	30	N	50000	contig	no	
S.lycopersicum-chr2	4419987	4527318	31	F	C02HBa0168N10.2	1	107332	+
S.lycopersicum-chr2	4527319	4600000	32	N	72682	contig	no	
S.lycopersicum-chr2	4600001	4720940	33	F	C02HBa0072A04.1	1	120940	-
S.lycopersicum-chr2	4720941	4832832	34	F	C02HBa0066C13.1	24328	136219	+
S.lycopersicum-chr2	4832833	7000000	35	N	2167168	contig	no	
S.lycopersicum-chr2	7000001	7138260	36	F	C02HBa0329G05.3	1	138260	+
S.lycopersicum-chr2	7138261	7188260	37	N	50000	clone	yes	
S.lycopersicum-chr2	7188261	7268579	38	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	7268580	7318579	39	N	50000	contig	no	
S.lycopersicum-chr2	7318580	7365465	40	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7365466	7415465	41	N	50000	contig	no	
S.lycopersicum-chr2	7415466	7658093	42	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7658094	7708093	43	N	50000	contig	no	
S.lycopersicum-chr2	7708094	7836427	44	F	C02HBa0323A14.2	1	128334	+
S.lycopersicum-chr2	7836428	7886427	45	N	50000	contig	no	
S.lycopersicum-chr2	7886428	8066297	46	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8066298	8116297	47	N	50000	contig	no	
S.lycopersicum-chr2	8116298	8197696	48	F	C02HBa0044O16.1	1	81399	+
S.lycopersicum-chr2	8197697	8260331	49	F	C02SLm0073G04.1	26451	89085	-
S.lycopersicum-chr2	8260332	8310331	50	N	50000	contig	no	
S.lycopersicum-chr2	8310332	8446126	51	F	C02HBa0165K22.1	1	135795	-
S.lycopersicum-chr2	8446127	8525475	52	F	C02SLm0049G16.2	35692	115040	+
S.lycopersicum-chr2	8525476	8575475	53	N	50000	clone	yes	
S.lycopersicum-chr2	8575476	8731365	54	F	C02HBa0320D04.2	1	155890	+
S.lycopersicum-chr2	8731366	8843349	55	F	C02HBa0111M05.1	32722	144705	+
S.lycopersicum-chr2	8843350	8867038	56	F	C02HBa0175O20.1	122540	146228	-
S.lycopersicum-chr2	8867039	8944487	57	F	C02HBa0144P17.1	15144	92592	+
S.lycopersicum-chr2	8944488	8994487	58	N	50000	contig	no	
S.lycopersicum-chr2	8994488	9134420	59	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	9134421	9184420	60	N	50000	contig	no	
S.lycopersicum-chr2	9184421	9320659	61	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	9320660	9370659	62	N	50000	contig	no	
S.lycopersicum-chr2	9370660	9521085	63	F	C02HBa0060J03.2	1	150426	+
S.lycopersicum-chr2	9521086	9571085	64	N	50000	clone	yes	
S.lycopersicum-chr2	9571086	9700682	65	F	C02HBa0159F19.2	1	129597	+
S.lycopersicum-chr2	9700683	9750682	66	N	50000	contig	no	
S.lycopersicum-chr2	9750683	9862756	67	F	C02HBa0009K06.2	1	112074	+
S.lycopersicum-chr2	9862757	9912756	68	N	50000	contig	no	
S.lycopersicum-chr2	9912757	9958340	69	F	C02HBa0213A01.2	1	45584	+
S.lycopersicum-chr2	9958341	10008340	70	N	50000	contig	no	
S.lycopersicum-chr2	10008341	10143632	71	F	C02HBa0023N04.2	1	135292	+
S.lycopersicum-chr2	10143633	10193632	72	N	50000	clone	yes	
S.lycopersicum-chr2	10193633	10298940	73	F	C02HBa0106H06.1	1	105308	+
S.lycopersicum-chr2	10298941	10390309	74	F	C02HBa0116F10.1	19514	110882	+
S.lycopersicum-chr2	10390310	10440309	75	N	50000	clone	yes	
S.lycopersicum-chr2	10440310	10477873	76	F	C02SLm0097L01.2	1	37564	+
S.lycopersicum-chr2	10477874	10647664	77	F	C02SLm0128E12.1	10114	179904	-
S.lycopersicum-chr2	10647665	10697664	78	N	50000	clone	yes	
S.lycopersicum-chr2	10697665	10799436	79	F	C02HBa0030A21.2	1	101772	-
S.lycopersicum-chr2	10799437	10857123	80	F	C02HBa0074A14.2	52672	110358	+
S.lycopersicum-chr2	10857124	10949087	81	F	C02HBa0215M12.1	67803	159766	+
S.lycopersicum-chr2	10949088	10999087	82	N	50000	contig	no	
S.lycopersicum-chr2	10999088	11112816	83	F	C02HBa0164H08.1	1	113729	+
S.lycopersicum-chr2	11112817	11162816	84	N	50000	contig	no	
S.lycopersicum-chr2	11162817	11274860	85	F	C02SLe0010E18.1	1	112044	+
S.lycopersicum-chr2	11274861	11344110	86	F	C02HBa0134G09.1	54590	123839	-
S.lycopersicum-chr2	11344111	11471387	87	F	C02HBa0180C05.1	20927	148203	+
S.lycopersicum-chr2	11471388	11521387	88	N	50000	contig	no	
S.lycopersicum-chr2	11521388	11724405	89	F	C02SLe0123B22.1	1	203018	+
S.lycopersicum-chr2	11724406	11774405	90	N	50000	clone	yes	
S.lycopersicum-chr2	11774406	11910236	91	F	C02HBa0011A02.2	1	135831	+
S.lycopersicum-chr2	11910237	11960236	92	N	50000	clone	yes	
S.lycopersicum-chr2	11960237	12092012	93	F	C02HBa0236E02.1	1	131776	+
S.lycopersicum-chr2	12092013	12158125	94	F	C02SLm0014P22.2	13385	79497	+
S.lycopersicum-chr2	12158126	12208125	95	N	50000	clone	yes	
S.lycopersicum-chr2	12208126	12305276	96	F	C02SLm0065M14.2	1	97151	-
S.lycopersicum-chr2	12305277	12400310	97	F	C02HBa0016A12.2	19544	114577	+
S.lycopersicum-chr2	12400311	12485928	98	F	C02HBa0190P16.1	9835	95452	+
S.lycopersicum-chr2	12485929	12562452	99	F	C02HBa0031A13.1	12582	89105	-
S.lycopersicum-chr2	12562453	12612452	100	N	50000	contig	no	
S.lycopersicum-chr2	12612453	12700115	101	F	C02HBa0124N09.1	1	87663	+
S.lycopersicum-chr2	12700116	12750115	102	N	50000	clone	yes	
S.lycopersicum-chr2	12750116	12892917	103	F	C02HBa0236E08.1	1	142802	+
S.lycopersicum-chr2	12892918	12942917	104	N	50000	contig	no	
S.lycopersicum-chr2	12942918	13078494	105	F	C02HBa0046M08.2	1	135577	+
S.lycopersicum-chr2	13078495	13128494	106	N	50000	contig	no	
S.lycopersicum-chr2	13128495	13236227	107	F	C02SLe0033D19.2	1	107733	+
S.lycopersicum-chr2	13236228	13289704	108	F	C02HBa0111M10.2	54012	107488	+
S.lycopersicum-chr2	13289705	13351513	109	F	C02HBa0008G02.1	85198	147006	-
S.lycopersicum-chr2	13351514	13399737	110	F	C02SLm0066K03.2	74853	123076	-
S.lycopersicum-chr2	13399738	13514627	111	F	C02HBa0226F10.1	17208	132097	+
S.lycopersicum-chr2	13514628	13564627	112	N	50000	contig	no	
S.lycopersicum-chr2	13564628	13621951	113	F	C02HBa0104A12.1	1	57324	+
S.lycopersicum-chr2	13621952	13671951	114	N	50000	contig	no	
S.lycopersicum-chr2	13671952	13802972	115	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	13802973	13950000	116	N	147028	contig	no	
S.lycopersicum-chr2	13950001	14082204	117	F	C02HBa0064B17.3	1	132204	+
S.lycopersicum-chr2	14082205	14164788	118	F	C02SLm0055O24.2	12197	94780	-
S.lycopersicum-chr2	14164789	14214788	119	N	50000	contig	no	
S.lycopersicum-chr2	14214789	14337449	120	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	14337450	14447457	121	F	C02HBa0072B02.2	5384	115391	+
S.lycopersicum-chr2	14447458	14497457	122	N	50000	contig	no	
S.lycopersicum-chr2	14497458	14610759	123	F	C02HBa0032J10.3	1	113302	+
S.lycopersicum-chr2	14610760	14660759	124	N	50000	clone	yes	
S.lycopersicum-chr2	14660760	14811187	125	F	C02HBa0177F12.3	1	150428	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14811188	60000000	126	N	45188813	contig	no	
S.lycopersicum-chr2	60000001	60114760	127	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	60114761	60164760	128	N	50000	contig	no	
S.lycopersicum-chr2	60164761	60227221	129	F	C02HBa0138P10.1	1	62461	+
S.lycopersicum-chr2	60227222	60277221	130	N	50000	contig	no	
S.lycopersicum-chr2	60277222	60367900	131	F	C02SLe0016P15.1	1	90679	+
S.lycopersicum-chr2	60367901	60417900	132	N	50000	contig	no	
S.lycopersicum-chr2	60417901	60542381	133	F	C02SLm0100O21.2	1	124481	+
S.lycopersicum-chr2	60542382	60592381	134	N	50000	contig	no	
S.lycopersicum-chr2	60592382	60738301	135	F	C02HBa0090O01.2	1	145920	+
S.lycopersicum-chr2	60738302	60788301	136	N	50000	contig	no	
S.lycopersicum-chr2	60788302	60860558	137	F	C02HBa0257H21.2	1	72257	+
S.lycopersicum-chr2	60860559	60910558	138	N	50000	contig	no	
S.lycopersicum-chr2	60910559	60994589	139	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	60994590	61044589	140	N	50000	contig	no	
S.lycopersicum-chr2	61044590	61167264	141	F	C02HBa0160F05.2	1	122675	+
S.lycopersicum-chr2	61167265	61217264	142	N	50000	contig	no	
S.lycopersicum-chr2	61217265	61346018	143	F	C02SLm0020N19.2	1	128754	+
S.lycopersicum-chr2	61346019	61396018	144	N	50000	contig	no	
S.lycopersicum-chr2	61396019	61463423	145	F	C02HBa0223O24.1	1	67405	+
S.lycopersicum-chr2	61463424	61513423	146	N	50000	contig	no	
S.lycopersicum-chr2	61513424	61611473	147	F	C02SLm0064E19.2	1	98050	+
S.lycopersicum-chr2	61611474	61661473	148	N	50000	contig	no	
S.lycopersicum-chr2	61661474	61786209	149	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	61786210	61836209	150	N	50000	contig	no	
S.lycopersicum-chr2	61836210	61960641	151	F	C02SLm0100F12.1	1	124432	+
S.lycopersicum-chr2	61960642	62010641	152	N	50000	contig	no	
S.lycopersicum-chr2	62010642	62120840	153	F	C02SLe0042D07.2	1	110199	+
S.lycopersicum-chr2	62120841	62170840	154	N	50000	contig	no	
S.lycopersicum-chr2	62170841	62311108	155	F	C02HBa0172G12.1	1	140268	+
S.lycopersicum-chr2	62311109	62361108	156	N	50000	contig	no	
S.lycopersicum-chr2	62361109	62450902	157	F	C02SLm0064G08.1	1	89794	+
S.lycopersicum-chr2	62450903	62500902	158	N	50000	contig	no	
S.lycopersicum-chr2	62500903	62610961	159	F	C02SLm0006E22.1	1	110059	+
S.lycopersicum-chr2	62610962	62660961	160	N	50000	contig	no	
S.lycopersicum-chr2	62660962	62780462	161	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	62780463	62830462	162	N	50000	contig	no	
S.lycopersicum-chr2	62830463	62945745	163	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	62945746	62995745	164	N	50000	contig	no	
S.lycopersicum-chr2	62995746	63083577	165	F	C02SLm0057H03.1	1	87832	+
S.lycopersicum-chr2	63083578	63133577	166	N	50000	contig	no	
S.lycopersicum-chr2	63133578	63208710	167	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	63208711	63258710	168	N	50000	contig	no	
S.lycopersicum-chr2	63258711	63297577	169	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	63297578	63347577	170	N	50000	contig	no	
S.lycopersicum-chr2	63347578	63469568	171	F	C02HBa0044J01.1	1	121991	+
S.lycopersicum-chr2	63469569	63519568	172	N	50000	contig	no	
S.lycopersicum-chr2	63519569	63628355	173	F	C02SLm0042B19.2	1	108787	+
S.lycopersicum-chr2	63628356	63678355	174	N	50000	contig	no	
S.lycopersicum-chr2	63678356	63740520	175	F	C02HBa0185P07.1	1	62165	+
S.lycopersicum-chr2	63740521	63790520	176	N	50000	contig	no	
S.lycopersicum-chr2	63790521	63861915	177	F	C02SLm0045L06.2	1	71395	+
S.lycopersicum-chr2	63861916	63911915	178	N	50000	contig	no	
S.lycopersicum-chr2	63911916	63995246	179	F	C02SLm0065K08.2	1	83331	+
S.lycopersicum-chr2	63995247	64045246	180	N	50000	contig	no	
S.lycopersicum-chr2	64045247	64078865	181	F	C02HBa0214B22.1	1	33619	+
S.lycopersicum-chr2	64078866	64128865	182	N	50000	contig	no	
S.lycopersicum-chr2	64128866	64220216	183	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	64220217	64270216	184	N	50000	contig	no	
S.lycopersicum-chr2	64270217	64381732	185	F	C02HBa0091J18.1	1	111516	+
S.lycopersicum-chr2	64381733	64431732	186	N	50000	contig	no	
S.lycopersicum-chr2	64431733	64523311	187	F	C02SLe0011K05.1	1	91579	+
S.lycopersicum-chr2	64523312	64573311	188	N	50000	contig	no	
S.lycopersicum-chr2	64573312	64724473	189	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	64724474	64774473	190	N	50000	contig	no	
S.lycopersicum-chr2	64774474	64916778	191	F	C02HBa0189G15.1	1	142305	+
S.lycopersicum-chr2	64916779	64966778	192	N	50000	contig	no	
S.lycopersicum-chr2	64966779	65079570	193	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	65079571	65129570	194	N	50000	contig	no	
S.lycopersicum-chr2	65129571	65247299	195	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	65247300	65297299	196	N	50000	contig	no	
S.lycopersicum-chr2	65297300	65412891	197	F	C02HBa0155D20.2	1	115592	+
S.lycopersicum-chr2	65412892	65503861	198	F	C02SLe0053H21.1	56227	147196	-
S.lycopersicum-chr2	65503862	65553861	199	N	50000	contig	no	
S.lycopersicum-chr2	65553862	65677939	200	F	C02HBa0146O16.1	1	124078	-
S.lycopersicum-chr2	65677940	65731959	201	F	C02HBa0030E13.1	56662	110681	+
S.lycopersicum-chr2	65731960	65781959	202	N	50000	contig	no	
S.lycopersicum-chr2	65781960	65880451	203	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	65880452	66035666	204	F	C02HBa0155E05.2	3844	159058	+
S.lycopersicum-chr2	66035667	66085666	205	N	50000	contig	no	
S.lycopersicum-chr2	66085667	66224446	206	F	C02HBa0161P02.1	1	138780	-
S.lycopersicum-chr2	66224447	66256852	207	F	C02HBa0031A21.1	100203	132608	+
S.lycopersicum-chr2	66256853	66306852	208	N	50000	clone	yes	
S.lycopersicum-chr2	66306853	66401362	209	F	C02SLe0075O22.1	1	94510	-
S.lycopersicum-chr2	66401363	66511435	210	F	C02HBa0059M17.2	4964	115036	+