#Draft Tomato chromosome 2
#autogenerated-by SGN mummer/phrap AGP generator (bsub_generate_agp.pl)
S.lycopersicum-chr2	1	50000	1	N	50000	contig	no	
S.lycopersicum-chr2	50001	181547	2	F	C02HBa0007F24.3	1	131547	+
S.lycopersicum-chr2	181548	231547	3	N	50000	contig	no	
S.lycopersicum-chr2	231548	393744	4	F	C02HBa0323C04.1	1	162197	+
S.lycopersicum-chr2	393745	1300000	5	N	906256	contig	no	
S.lycopersicum-chr2	1300001	1433012	6	F	C02HBa0303I24.1	1	133012	+
S.lycopersicum-chr2	1433013	1600000	7	N	166988	contig	no	
S.lycopersicum-chr2	1600001	1726228	8	F	C02HBa0163K16.1	1	126228	+
S.lycopersicum-chr2	1726229	1800000	9	N	73772	contig	no	
S.lycopersicum-chr2	1800001	1944112	10	F	C02HBa0190N21.2	1	144112	+
S.lycopersicum-chr2	1944113	1994112	11	N	50000	contig	no	
S.lycopersicum-chr2	1994113	2119251	12	F	C02HBa0025N15.2	1	125139	+
S.lycopersicum-chr2	2119252	2169251	13	N	50000	contig	no	
S.lycopersicum-chr2	2169252	2283759	14	F	C02HBa0280E02.1	1	114508	+
S.lycopersicum-chr2	2283760	2500000	15	N	216241	contig	no	
S.lycopersicum-chr2	2500001	2634560	16	F	C02HBa0209K17.1	1	134560	+
S.lycopersicum-chr2	2634561	3300000	17	N	665440	contig	no	
S.lycopersicum-chr2	3300001	3417181	18	F	C02HBa0025A22.2	1	117181	+
S.lycopersicum-chr2	3417182	3600000	19	N	182819	contig	no	
S.lycopersicum-chr2	3600001	3717515	20	F	C02HBa0101G09.1	1	117515	+
S.lycopersicum-chr2	3717516	3767515	21	N	50000	clone	yes	
S.lycopersicum-chr2	3767516	3903839	22	F	C02HBa0320M09.3	1	136324	+
S.lycopersicum-chr2	3903840	3953839	23	N	50000	contig	no	
S.lycopersicum-chr2	3953840	4072155	24	F	C02HBa0155C04.3	1	118316	+
S.lycopersicum-chr2	4072156	4103643	25	F	C02HBa0168N10.1	75861	107348	-
S.lycopersicum-chr2	4103644	4164627	26	F	C02SLm0045L06.2	10412	71395	+
S.lycopersicum-chr2	4164628	4600000	27	N	435373	contig	no	
S.lycopersicum-chr2	4600001	4720940	28	F	C02HBa0072A04.1	1	120940	-
S.lycopersicum-chr2	4720941	4832832	29	F	C02HBa0066C13.1	24328	136219	+
S.lycopersicum-chr2	4832833	7000000	30	N	2167168	contig	no	
S.lycopersicum-chr2	7000001	7138270	31	F	C02HBa0329G05.2	1	138270	+
S.lycopersicum-chr2	7138271	7188270	32	N	50000	clone	yes	
S.lycopersicum-chr2	7188271	7268589	33	F	C02SLm0019I01.2	1	80319	+
S.lycopersicum-chr2	7268590	7318589	34	N	50000	contig	no	
S.lycopersicum-chr2	7318590	7365475	35	F	C02SLm0008E03.1	1	46886	+
S.lycopersicum-chr2	7365476	7415475	36	N	50000	contig	no	
S.lycopersicum-chr2	7415476	7658103	37	F	C02HBa0167J21.1	1	242628	+
S.lycopersicum-chr2	7658104	7708103	38	N	50000	contig	no	
S.lycopersicum-chr2	7708104	7836437	39	F	C02HBa0323A14.2	1	128334	+
S.lycopersicum-chr2	7836438	7886437	40	N	50000	contig	no	
S.lycopersicum-chr2	7886438	8066307	41	F	C02HBa0204D01.1	1	179870	+
S.lycopersicum-chr2	8066308	8116307	42	N	50000	contig	no	
S.lycopersicum-chr2	8116308	8272209	43	F	C02HBa0320D04.1	1	155902	+
S.lycopersicum-chr2	8272210	8322209	44	N	50000	contig	no	
S.lycopersicum-chr2	8322210	8403608	45	F	C02HBa0044O16.1	1	81399	+
S.lycopersicum-chr2	8403609	8453608	46	N	50000	contig	no	
S.lycopersicum-chr2	8453609	8593541	47	F	C02HBa0198A03.1	1	139933	+
S.lycopersicum-chr2	8593542	8643541	48	N	50000	contig	no	
S.lycopersicum-chr2	8643542	8779336	49	F	C02HBa0165K22.1	1	135795	-
S.lycopersicum-chr2	8779337	8858689	50	F	C02SLm0049G16.1	35696	115048	+
S.lycopersicum-chr2	8858690	8908689	51	N	50000	contig	no	
S.lycopersicum-chr2	8908690	9044928	52	F	C02HBa0291P19.1	1	136239	+
S.lycopersicum-chr2	9044929	9094928	53	N	50000	contig	no	
S.lycopersicum-chr2	9094929	9245354	54	F	C02HBa0060J03.2	1	150426	+
S.lycopersicum-chr2	9245355	9295354	55	N	50000	clone	yes	
S.lycopersicum-chr2	9295355	9424951	56	F	C02HBa0159F19.2	1	129597	+
S.lycopersicum-chr2	9424952	9474951	57	N	50000	contig	no	
S.lycopersicum-chr2	9474952	9587025	58	F	C02HBa0009K06.2	1	112074	+
S.lycopersicum-chr2	9587026	9637025	59	N	50000	contig	no	
S.lycopersicum-chr2	9637026	9682621	60	F	C02HBa0213A01.1	1	45596	+
S.lycopersicum-chr2	9682622	9732621	61	N	50000	contig	no	
S.lycopersicum-chr2	9732622	9867913	62	F	C02HBa0023N04.2	1	135292	+
S.lycopersicum-chr2	9867914	9917913	63	N	50000	clone	yes	
S.lycopersicum-chr2	9917914	9955485	64	F	C02SLm0097L01.1	1	37572	+
S.lycopersicum-chr2	9955486	10005485	65	N	50000	clone	yes	
S.lycopersicum-chr2	10005486	10110793	66	F	C02HBa0106H06.1	1	105308	+
S.lycopersicum-chr2	10110794	10202162	67	F	C02HBa0116F10.1	19514	110882	+
S.lycopersicum-chr2	10202163	10252162	68	N	50000	clone	yes	
S.lycopersicum-chr2	10252163	10353934	69	F	C02HBa0030A21.2	1	101772	-
S.lycopersicum-chr2	10353935	10411621	70	F	C02HBa0074A14.2	52672	110358	+
S.lycopersicum-chr2	10411622	10503585	71	F	C02HBa0215M12.1	67803	159766	+
S.lycopersicum-chr2	10503586	10553585	72	N	50000	contig	no	
S.lycopersicum-chr2	10553586	10667314	73	F	C02HBa0164H08.1	1	113729	+
S.lycopersicum-chr2	10667315	10717314	74	N	50000	contig	no	
S.lycopersicum-chr2	10717315	10829358	75	F	C02SLe0010E18.1	1	112044	+
S.lycopersicum-chr2	10829359	10898608	76	F	C02HBa0134G09.1	54590	123839	-
S.lycopersicum-chr2	10898609	11025885	77	F	C02HBa0180C05.1	20927	148203	+
S.lycopersicum-chr2	11025886	11075885	78	N	50000	contig	no	
S.lycopersicum-chr2	11075886	11155390	79	F	C02SLm0014P22.1	1	79505	+
S.lycopersicum-chr2	11155391	11205390	80	N	50000	clone	yes	
S.lycopersicum-chr2	11205391	11302549	81	F	C02SLm0065M14.1	1	97159	-
S.lycopersicum-chr2	11302550	11397579	82	F	C02HBa0016A12.2	19548	114577	+
S.lycopersicum-chr2	11397580	11447579	83	N	50000	contig	no	
S.lycopersicum-chr2	11447580	11650597	84	F	C02SLe0123B22.1	1	203018	+
S.lycopersicum-chr2	11650598	11700597	85	N	50000	clone	yes	
S.lycopersicum-chr2	11700598	11836428	86	F	C02HBa0011A02.2	1	135831	+
S.lycopersicum-chr2	11836429	11849009	87	F	C02HBa0031A13.1	76531	89111	+
S.lycopersicum-chr2	11849010	11899009	88	N	50000	contig	no	
S.lycopersicum-chr2	11899010	11986672	89	F	C02HBa0124N09.1	1	87663	+
S.lycopersicum-chr2	11986673	12036672	90	N	50000	contig	no	
S.lycopersicum-chr2	12036673	12172249	91	F	C02HBa0046M08.2	1	135577	+
S.lycopersicum-chr2	12172250	12222249	92	N	50000	contig	no	
S.lycopersicum-chr2	12222250	12329738	93	F	C02HBa0111M10.2	1	107489	+
S.lycopersicum-chr2	12329739	12439771	94	F	C02SLm0066K03.2	13044	123076	-
S.lycopersicum-chr2	12439772	12554661	95	F	C02HBa0226F10.1	17208	132097	+
S.lycopersicum-chr2	12554662	12604661	96	N	50000	contig	no	
S.lycopersicum-chr2	12604662	12661985	97	F	C02HBa0104A12.1	1	57324	+
S.lycopersicum-chr2	12661986	12711985	98	N	50000	contig	no	
S.lycopersicum-chr2	12711986	12843006	99	F	C02HBa0073P13.1	1	131021	+
S.lycopersicum-chr2	12843007	13950000	100	N	1106994	contig	no	
S.lycopersicum-chr2	13950001	14082204	101	F	C02HBa0064B17.3	1	132204	+
S.lycopersicum-chr2	14082205	14164792	102	F	C02SLm0055O24.1	12201	94788	-
S.lycopersicum-chr2	14164793	14214792	103	N	50000	contig	no	
S.lycopersicum-chr2	14214793	14337453	104	F	C02HBa0194L19.2	1	122661	-
S.lycopersicum-chr2	14337454	14447461	105	F	C02HBa0072B02.2	5384	115391	+
S.lycopersicum-chr2	14447462	14497461	106	N	50000	contig	no	
S.lycopersicum-chr2	14497462	14610763	107	F	C02HBa0032J10.3	1	113302	+
S.lycopersicum-chr2	14610764	14660763	108	N	50000	clone	yes	
S.lycopersicum-chr2	14660764	14811241	109	F	C02HBa0177F12.2	1	150478	+
# END OF DRAFT CHROMOSOME BUILD.  THE LINES BELOW CONTAIN SEQUENCES THAT COULD NOT BE LOCATED ON THE PHYSICAL MAP
S.lycopersicum-chr2	14811242	60000000	110	N	45188759	contig	no	
S.lycopersicum-chr2	60000001	60108795	111	F	C02SLm0042B19.1	1	108795	+
S.lycopersicum-chr2	60108796	60158795	112	N	50000	contig	no	
S.lycopersicum-chr2	60158796	60268854	113	F	C02SLm0006E22.1	1	110059	+
S.lycopersicum-chr2	60268855	60318854	114	N	50000	contig	no	
S.lycopersicum-chr2	60318855	60438355	115	F	C02SLm0025E22.1	1	119501	+
S.lycopersicum-chr2	60438356	60488355	116	N	50000	contig	no	
S.lycopersicum-chr2	60488356	60563488	117	F	C02SLe0042O06.1	1	75133	+
S.lycopersicum-chr2	60563489	60613488	118	N	50000	contig	no	
S.lycopersicum-chr2	60613489	60704167	119	F	C02SLe0016P15.1	1	90679	+
S.lycopersicum-chr2	60704168	60754167	120	N	50000	contig	no	
S.lycopersicum-chr2	60754168	60877363	121	F	C02HBa0162I09.1	1	123196	+
S.lycopersicum-chr2	60877364	60927363	122	N	50000	contig	no	
S.lycopersicum-chr2	60927364	61011394	123	F	C02SLe0010H16.1	1	84031	+
S.lycopersicum-chr2	61011395	61061394	124	N	50000	contig	no	
S.lycopersicum-chr2	61061395	61174186	125	F	C02HBa0098J01.1	1	112792	+
S.lycopersicum-chr2	61174187	61224186	126	N	50000	contig	no	
S.lycopersicum-chr2	61224187	61263053	127	F	C02HBa0212P19.1	1	38867	+
S.lycopersicum-chr2	61263054	61313053	128	N	50000	contig	no	
S.lycopersicum-chr2	61313054	61396392	129	F	C02SLm0065K08.1	1	83339	+
S.lycopersicum-chr2	61396393	61446392	130	N	50000	contig	no	
S.lycopersicum-chr2	61446393	61597554	131	F	C02HBa0030D08.1	1	151162	+
S.lycopersicum-chr2	61597555	61647554	132	N	50000	contig	no	
S.lycopersicum-chr2	61647555	61709719	133	F	C02HBa0185P07.1	1	62165	+
S.lycopersicum-chr2	61709720	61759719	134	N	50000	contig	no	
S.lycopersicum-chr2	61759720	61851298	135	F	C02SLe0011K05.1	1	91579	+
S.lycopersicum-chr2	61851299	61901298	136	N	50000	contig	no	
S.lycopersicum-chr2	61901299	62019027	137	F	C02HBa0013N18.1	1	117729	+
S.lycopersicum-chr2	62019028	62069027	138	N	50000	contig	no	
S.lycopersicum-chr2	62069028	62184612	139	F	C02HBa0155D20.2	1	115585	+
S.lycopersicum-chr2	62184613	62234612	140	N	50000	contig	no	
S.lycopersicum-chr2	62234613	62344823	141	F	C02SLe0042D07.1	1	110211	+
S.lycopersicum-chr2	62344824	62394823	142	N	50000	contig	no	
S.lycopersicum-chr2	62394824	62519347	143	F	C02SLm0100O21.1	1	124524	+
S.lycopersicum-chr2	62519348	62569347	144	N	50000	contig	no	
S.lycopersicum-chr2	62569348	62684630	145	F	C02HBa0040B13.1	1	115283	+
S.lycopersicum-chr2	62684631	62734630	146	N	50000	contig	no	
S.lycopersicum-chr2	62734631	62880550	147	F	C02HBa0090O01.2	1	145920	+
S.lycopersicum-chr2	62880551	62930550	148	N	50000	contig	no	
S.lycopersicum-chr2	62930551	63070818	149	F	C02HBa0172G12.1	1	140268	+
S.lycopersicum-chr2	63070819	63120818	150	N	50000	contig	no	
S.lycopersicum-chr2	63120819	63245554	151	F	C02HBa0044L14.1	1	124736	+
S.lycopersicum-chr2	63245555	63295554	152	N	50000	contig	no	
S.lycopersicum-chr2	63295555	63403299	153	F	C02SLe0033D19.1	1	107745	+
S.lycopersicum-chr2	63403300	63453299	154	N	50000	contig	no	
S.lycopersicum-chr2	63453300	63568059	155	F	C02SLe0034H10.1	1	114760	+
S.lycopersicum-chr2	63568060	63618059	156	N	50000	contig	no	
S.lycopersicum-chr2	63618060	63729575	157	F	C02HBa0091J18.1	1	111516	+
S.lycopersicum-chr2	63729576	63779575	158	N	50000	contig	no	
S.lycopersicum-chr2	63779576	63870926	159	F	C02SLe0096G02.1	1	91351	+
S.lycopersicum-chr2	63870927	63920926	160	N	50000	contig	no	
S.lycopersicum-chr2	63920927	64049680	161	F	C02SLm0020N19.2	1	128754	+
S.lycopersicum-chr2	64049681	64099680	162	N	50000	contig	no	
S.lycopersicum-chr2	64099681	64241985	163	F	C02HBa0189G15.1	1	142305	+
S.lycopersicum-chr2	64241986	64291985	164	N	50000	contig	no	
S.lycopersicum-chr2	64291986	64364254	165	F	C02HBa0257H21.1	1	72269	+
S.lycopersicum-chr2	64364255	64414254	166	N	50000	contig	no	
S.lycopersicum-chr2	64414255	64512746	167	F	C02SLe0057O21.1	1	98492	-
S.lycopersicum-chr2	64512747	64667961	168	F	C02HBa0155E05.2	3844	159058	+
S.lycopersicum-chr2	64667962	64717961	169	N	50000	contig	no	
S.lycopersicum-chr2	64717962	64816019	170	F	C02SLm0064E19.1	1	98058	-
S.lycopersicum-chr2	64816020	64930706	171	F	C02HBa0160F05.1	8001	122687	+
S.lycopersicum-chr2	64930707	64980706	172	N	50000	contig	no	
S.lycopersicum-chr2	64980707	65119486	173	F	C02HBa0161P02.1	1	138780	-
S.lycopersicum-chr2	65119487	65151892	174	F	C02HBa0031A21.1	100203	132608	+
S.lycopersicum-chr2	65151893	65201892	175	N	50000	clone	yes	
S.lycopersicum-chr2	65201893	65296402	176	F	C02SLe0075O22.1	1	94510	-
S.lycopersicum-chr2	65296403	65406475	177	F	C02HBa0059M17.2	4964	115036	+