#!/bin/bash

project="fgn"
builds="75 74 73 72 71"
logfile="/home/teri/fgn_blast_output.txt"
target_nr="/data/cluster/blast/databases/current/genbank/nr" # NR
target_ath1="/data/cluster/blast/databases/current/ath1/ATH1_pep" # arabidopsis
cd /home/teri/pgn_processing/scripts/blast_scripts
for build in $builds
do
	./00_generate_fasta.pl -p $project -b $build >>$logfile 
done
./01_run_blast.pl -p $project -t $target_ath1 -s 1 >>$logfile
./01_run_blast.pl -p $project -t $target_nr >>$logfile
./02_parse_blast_results.pl -p $project >>$logfile
./03_unigene_annotation_upload.pl -p $project >>$logfile