#!/bin/bash

project="pgn"
builds="72"
logfile="/home/teri/${project}_blast_output.txt"
target_1="/data/cluster/blast/databases/current/algae/Chlamydomonas.fasta"
target_2="/data/cluster/blast/databases/current/algae/Cyanidioschyzon.fasta"
target_3="/data/cluster/blast/databases/current/algae/Thalossiosira.fasta"
cd /home/teri/pgn_processing/scripts/blast_scripts
for build in $builds
do
	./00_generate_fasta.pl -p $project -b $build >>$logfile 
done
./01_run_blast.pl -p $project -b tblastx -t $target_2 -s 1 #>>$logfile
./01_run_blast.pl -p $project -b tblastx -t $target_3 -s 1 #>>$logfile
./01_run_blast.pl -p $project -t $target_1 #>>$logfile
./02_parse_blast_results.pl -p $project #>>$logfile
./03_unigene_annotation_upload.pl -p $project #>>$logfile