Found 45729 sequences. phrap /tmp/all.fasta -new_ace phrap version 0.990329 Reading parameters ... 0.504 Mbytes allocated -- total 0.504 Mbytes Run date:time 040217:180429 Done Total space allocated: 0.504 Mbytes; currently free: 0.499 Mbytes in 2 blocks Reading query file into memory ...1.008 Mbytes allocated -- total 1.512 Mbytes 3.024 Mbytes allocated -- total 4.536 Mbytes 46.872 Mbytes allocated -- total 51.408 Mbytes 0.504 Mbytes allocated -- total 51.912 Mbytes Done Total space allocated: 51.912 Mbytes; currently free: 0.041 Mbytes in 6 blocks Complementing ... Done Total space allocated: 51.912 Mbytes; currently free: 0.041 Mbytes in 6 blocks Allocating align_entries ...5.544 Mbytes allocated -- total 57.456 Mbytes 23.688 Mbytes allocated -- total 81.144 Mbytes 23.688 Mbytes allocated -- total 104.832 Mbytes Done Total space allocated: 104.832 Mbytes; currently free: 1.257 Mbytes in 9 blocks Reading quality files ... Done Total space allocated: 104.832 Mbytes; currently free: 1.257 Mbytes in 9 blocks Testing ends ... Done Total space allocated: 104.832 Mbytes; currently free: 1.257 Mbytes in 9 blocks 4.536 Mbytes allocated -- total 109.368 Mbytes Finding words ... 0 10586 10 378497 20 266112 30 157782 40 93169 50 54595 60 32546 70 19778 80 11904 90 7582 100 4877 110 3162 120 2052 130 1435 140 1023 150 721 160 524 170 365 180 325 190 258 200 206 210 150 220 123 230 100 240 66 250 60 260 51 270 36 280 36 290 42 300 24 310 26 320 21 330 30 340 22 350 19 360 22 370 15 380 22 390 15 400 12 410 9 420 3 430 4 440 9 450 15 460 14 470 3 480 5 490 10 500 8 510 5 520 7 530 5 540 9 550 4 560 3 570 6 580 2 590 4 600 4 610 1 620 5 630 1 640 1 650 2 660 3 680 1 690 1 700 3 710 1 720 1 750 1 760 1 780 2 790 1 810 1 830 1 850 2 900 1 990 1 1000 25 min no. words: 0 at 401 max no. words: 19829 at 1048575 avg no. words: 0.090.720 Mbytes allocated -- total 200.088 Mbytes 22.680 Mbytes allocated -- total 222.768 Mbytes Done Total space allocated: 222.768 Mbytes; currently free: 1.637 Mbytes in 12 blocks 23291455 words; after pruning: 22619704 Sorting words ... Done 14 16647267 15 10544 16 7176 17 5823 18 5011 19 4234 20 3890 21 3573 22 3143 23 2455 24 1612 25 1103 26 1044 27 1033 28 1027 29 1065 30 1129 Finding complement word matches ...0.504 Mbytes allocated -- total 223.272 Mbytes 0.504 Mbytes allocated -- total 223.776 Mbytes 0.504 Mbytes allocated -- total 224.280 Mbytes 0.504 Mbytes allocated -- total 224.784 Mbytes 0.504 Mbytes allocated -- total 225.288 Mbytes 0.504 Mbytes allocated -- total 225.792 Mbytes 0.504 Mbytes allocated -- total 226.296 Mbytes 0.504 Mbytes allocated -- total 226.800 Mbytes 0.504 Mbytes allocated -- total 227.304 Mbytes 0.504 Mbytes allocated -- total 227.808 Mbytes 0.504 Mbytes allocated -- total 228.312 Mbytes 0.504 Mbytes allocated -- total 228.816 Mbytes 0.504 Mbytes allocated -- total 229.320 Mbytes 0.504 Mbytes allocated -- total 229.824 Mbytes 0.504 Mbytes allocated -- total 230.328 Mbytes 0.504 Mbytes allocated -- total 230.832 Mbytes 0.504 Mbytes allocated -- total 231.336 Mbytes 0.504 Mbytes allocated -- total 231.840 Mbytes 0.504 Mbytes allocated -- total 232.344 Mbytes 0.504 Mbytes allocated -- total 232.848 Mbytes 0.504 Mbytes allocated -- total 233.352 Mbytes 0.504 Mbytes allocated -- total 233.856 Mbytes 0.504 Mbytes allocated -- total 234.360 Mbytes 0.504 Mbytes allocated -- total 234.864 Mbytes 0.504 Mbytes allocated -- total 235.368 Mbytes 0.504 Mbytes allocated -- total 235.872 Mbytes 0.504 Mbytes allocated -- total 236.376 Mbytes 0.504 Mbytes allocated -- total 236.880 Mbytes 0.504 Mbytes allocated -- total 237.384 Mbytes 0.504 Mbytes allocated -- total 237.888 Mbytes 0.504 Mbytes allocated -- total 238.392 Mbytes 0.504 Mbytes allocated -- total 238.896 Mbytes 0.504 Mbytes allocated -- total 239.400 Mbytes 0.504 Mbytes allocated -- total 239.904 Mbytes Done Total space allocated: 239.904 Mbytes; currently free: 0.638 Mbytes in 46 blocks n_cross_matches: 1033751 # pass words: 2070345, #fail words: 3146578 num_cand_pairs: 645674, num_dups: 388077 Finding internal word matches ...0.504 Mbytes allocated -- total 240.408 Mbytes 0.504 Mbytes allocated -- total 240.912 Mbytes 0.504 Mbytes allocated -- total 241.416 Mbytes 0.504 Mbytes allocated -- total 241.920 Mbytes 0.504 Mbytes allocated -- total 242.424 Mbytes 0.504 Mbytes allocated -- total 242.928 Mbytes 0.504 Mbytes allocated -- total 243.432 Mbytes 0.504 Mbytes allocated -- total 243.936 Mbytes 0.504 Mbytes allocated -- total 244.440 Mbytes 0.504 Mbytes allocated -- total 244.944 Mbytes 0.504 Mbytes allocated -- total 245.448 Mbytes 0.504 Mbytes allocated -- total 245.952 Mbytes 0.504 Mbytes allocated -- total 246.456 Mbytes 0.504 Mbytes allocated -- total 246.960 Mbytes 0.504 Mbytes allocated -- total 247.464 Mbytes 0.504 Mbytes allocated -- total 247.968 Mbytes 0.504 Mbytes allocated -- total 248.472 Mbytes 0.504 Mbytes allocated -- total 248.976 Mbytes 0.504 Mbytes allocated -- total 249.480 Mbytes 0.504 Mbytes allocated -- total 249.984 Mbytes 0.504 Mbytes allocated -- total 250.488 Mbytes 0.504 Mbytes allocated -- total 250.992 Mbytes 0.504 Mbytes allocated -- total 251.496 Mbytes 0.504 Mbytes allocated -- total 252.000 Mbytes 0.504 Mbytes allocated -- total 252.504 Mbytes 0.504 Mbytes allocated -- total 253.008 Mbytes 0.504 Mbytes allocated -- total 253.512 Mbytes 0.504 Mbytes allocated -- total 254.016 Mbytes 0.504 Mbytes allocated -- total 254.520 Mbytes 0.504 Mbytes allocated -- total 255.024 Mbytes 0.504 Mbytes allocated -- total 255.528 Mbytes 0.504 Mbytes allocated -- total 256.032 Mbytes 0.504 Mbytes allocated -- total 256.536 Mbytes 0.504 Mbytes allocated -- total 257.040 Mbytes 0.504 Mbytes allocated -- total 257.544 Mbytes 0.504 Mbytes allocated -- total 258.048 Mbytes 0.504 Mbytes allocated -- total 258.552 Mbytes 0.504 Mbytes allocated -- total 259.056 Mbytes 0.504 Mbytes allocated -- total 259.560 Mbytes 0.504 Mbytes allocated -- total 260.064 Mbytes 0.504 Mbytes allocated -- total 260.568 Mbytes 0.504 Mbytes allocated -- total 261.072 Mbytes 0.504 Mbytes allocated -- total 261.576 Mbytes 0.504 Mbytes allocated -- total 262.080 Mbytes 0.504 Mbytes allocated -- total 262.584 Mbytes n_same_matches: 1340334 , #pass words: 1340334, #fail words: 1625797 num_cand_pairs: 1450813, num_dups: 923272 Done Total space allocated: 262.584 Mbytes; currently free: 0.575 Mbytes in 91 blocks Finding duplicates ... Done Total space allocated: 262.584 Mbytes; currently free: 118.051 Mbytes in 95 blocks SWATTING ..................................................................................................................................................................................................................................................................................... WARNING: 30 16 30 start/end out of bounds 471 504 1 567 / 90 124 91 323................................................................................................................................................................................. WARNING: 30 16 30 start/end out of bounds 480 513 1 576 / 90 124 91 323..................... WARNING: 36 19 30 start/end out of bounds 200 239 1 267 / 84 124 85 323............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ WARNING: 30 19 30 start/end out of bounds 491 524 1 610 / 260 294 261 294............................................................................................................................................... WARNING: 44 23 30 start/end out of bounds 549 596 1 598 / 53 101 54 307.......... WARNING: 31 21 30 start/end out of bounds 148 182 1 354 / 124 159 125 248....................................................................................... WARNING: 30 16 30 start/end out of bounds 23 56 1 649 / 67 101 68 307............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Done Total space allocated: 262.584 Mbytes; currently free: 104.894 Mbytes in 102 blocks Quickalign: 222862 successes, 9901 failures 1856625 SWAT alignments performed. 159750 pairs have score >= 30 Finding vector matches ... Done Total space allocated: 262.584 Mbytes; currently free: 145.852 Mbytes in 102 blocks Making reversed pairs ... Done Total space allocated: 262.584 Mbytes; currently free: 130.886 Mbytes in 102 blocks Finding starts/ends ... Done Total space allocated: 262.584 Mbytes; currently free: 130.886 Mbytes in 102 blocks Total # pairs: 320000, size: 14.080 Mbytes Finding segments ... Done Total space allocated: 262.584 Mbytes; currently free: 130.466 Mbytes in 102 blocks Finding more vector ... Done Total space allocated: 262.584 Mbytes; currently free: 130.466 Mbytes in 102 blocks Finding mean offsets ... Done Total space allocated: 262.584 Mbytes; currently free: 130.466 Mbytes in 102 blocks Finding near duplicates ... Done Total space allocated: 262.584 Mbytes; currently free: 130.466 Mbytes in 102 blocks Finding self matches ... Done Total space allocated: 262.584 Mbytes; currently free: 130.466 Mbytes in 102 blocks Finding node rejects ... Done Total space allocated: 262.584 Mbytes; currently free: 130.466 Mbytes in 102 blocks Finding truncated pairs ... Done Total space allocated: 262.584 Mbytes; currently free: 130.466 Mbytes in 102 blocks Finding multi-segment reads ... Done Total space allocated: 262.584 Mbytes; currently free: 130.466 Mbytes in 102 blocks Finding starts/ends ... Done Total space allocated: 262.584 Mbytes; currently free: 130.466 Mbytes in 102 blocks Finding deletions ... Done Total space allocated: 262.584 Mbytes; currently free: 130.466 Mbytes in 102 blocks Finding extents ... Done Total space allocated: 262.584 Mbytes; currently free: 130.076 Mbytes in 102 blocks Printing qualities ... Done Total space allocated: 262.584 Mbytes; currently free: 130.076 Mbytes in 102 blocks Computing LLR scores ... Done Total space allocated: 262.584 Mbytes; currently free: 130.076 Mbytes in 102 blocks Finding extents ... Done Total space allocated: 262.584 Mbytes; currently free: 130.076 Mbytes in 102 blocks Computing LLR scores ... Done Total space allocated: 262.584 Mbytes; currently free: 130.076 Mbytes in 102 blocks Printing qualities ... Done Total space allocated: 262.584 Mbytes; currently free: 130.076 Mbytes in 102 blocks Printing coverage ... Done Total space allocated: 262.584 Mbytes; currently free: 130.076 Mbytes in 102 blocks Finding blocked reads ... Done Total space allocated: 262.584 Mbytes; currently free: 130.076 Mbytes in 102 blocks Merging ... Pass: 1 #reads #contigs (not counting singlets) 1 22200 2 944 3 325 4 169 5 81 6 60 7 25 8 29 9 14 10 13 11 10 12 11 13 6 14 9 15 2 16 6 17 1 18 5 19 2 21 2 22 1 23 1 24 1 25 1 27 2 29 2 30 1 41 1 Pass: 3 #reads #contigs (not counting singlets) 1 10591 2 4204 3 1019 4 409 5 194 6 117 7 67 8 31 9 34 10 20 11 18 12 10 13 8 14 12 15 7 16 8 17 2 18 2 19 6 20 2 21 5 22 1 23 2 24 1 25 2 26 1 30 3 31 1 32 3 35 1 44 1 Pass: 4 #reads #contigs (not counting singlets) 1 9432 2 4133 3 1152 4 473 5 236 6 129 7 77 8 37 9 36 10 21 11 22 12 10 13 11 14 8 15 13 16 9 17 2 18 4 19 6 20 1 21 5 22 1 23 2 24 1 25 1 26 3 30 3 31 1 32 3 35 2 51 1 Read equivalence class histogram: 1 28017 2 4082 3 1091 4 430 5 214 6 121 7 63 8 32 9 35 10 15 11 16 12 9 13 10 14 7 15 12 16 8 17 3 18 4 19 5 20 2 21 5 23 1 24 2 25 2 26 2 30 2 31 1 32 2 35 1 51 1 Done Total space allocated: 262.584 Mbytes; currently free: 124.855 Mbytes in 183 blocks Merging chimeras ... Done Total space allocated: 262.584 Mbytes; currently free: 124.868 Mbytes in 261 blocks Merging other singletons ... LLR_join_cutoff: -60 Done Total space allocated: 262.584 Mbytes; currently free: 124.866 Mbytes in 256 blocks Finding extents ... Done Total space allocated: 262.584 Mbytes; currently free: 125.371 Mbytes in 256 blocks Making contig sequences ... stack depth: 1000 UNPOSITIONED READ: atr02-1ms4-b11-28353 UNPOSITIONED READ: eca01-11cs1-f01-35169 stack depth: 1000 stack depth: 2000 stack depth: 1000 stack depth: 1000 stack depth: 1000 stack depth: 1000 stack depth: 1000 stack depth: 1000 stack depth: 1000 UNPOSITIONED READ: zfi01-6ms4-e09-54260 UNPOSITIONED READ: zfi01-10ms3-h09-46715 Done Total space allocated: 262.584 Mbytes; currently free: 93.038 Mbytes in 5388 blocks Aligning reads to contigs ... Done Total space allocated: 262.584 Mbytes; currently free: 92.447 Mbytes in 5389 blocks Revising contigs ... Done Total space allocated: 262.584 Mbytes; currently free: 83.357 Mbytes in 5548 blocks 31248 old base segments, 0.750 Mb 315570 new base segments, 7.574 Mb total old contig length 5016076, 15.048 Mb total new contig length 5013169, 15.040 Mb Aligning reads to contigs ... Done Total space allocated: 262.584 Mbytes; currently free: 82.817 Mbytes in 5549 blocks Finding unaligned pairs ... Done Total space allocated: 262.584 Mbytes; currently free: 82.817 Mbytes in 5549 blocks Total # segment blocks: 14, size: 0.840 Mbytes Printing contigs ... Done Total space allocated: 262.584 Mbytes; currently free: 82.222 Mbytes in 5486 blocks Total # segment blocks: 14, size: 0.840 Mbytes Writing contigs ... Done Total space allocated: 262.584 Mbytes; currently free: 82.220 Mbytes in 5500 blocks Mapping reads by name ... Done Total space allocated: 262.584 Mbytes; currently free: 82.220 Mbytes in 5500 blocks Checking pairs ... Done Total space allocated: 262.584 Mbytes; currently free: 82.220 Mbytes in 5500 blocks Total space allocated: 262.584 Mbytes; currently free: 82.220 Mbytes in 5500 blocks Total # pairs: 320000, size: 14.080 Mbytes Total # segment blocks: 14, size: 0.840 Mbytes Total # diffs: 6795089, in 216156 lists, size: 6.795 Mbytes Total # tags: 10663, size: 0.469 Mbytes Library sequence assembly runtime: 0H:19M:20S Contig membership alignment extraction runtime: 0H:1M:29S Assembly runtime: 0H:20M:49S Found 4792 sequences. phrap /tmp/pam01.fasta -new_ace phrap version 0.990329 Reading parameters ... 0.504 Mbytes allocated -- total 0.504 Mbytes Run date:time 040218:102851 Done Total space allocated: 0.504 Mbytes; currently free: 0.499 Mbytes in 2 blocks Reading query file into memory ...5.544 Mbytes allocated -- total 6.048 Mbytes 0.504 Mbytes allocated -- total 6.552 Mbytes Done Total space allocated: 6.552 Mbytes; currently free: 0.476 Mbytes in 4 blocks Complementing ... Done Total space allocated: 6.552 Mbytes; currently free: 0.476 Mbytes in 4 blocks Allocating align_entries ...1.008 Mbytes allocated -- total 7.560 Mbytes 3.024 Mbytes allocated -- total 10.584 Mbytes 3.024 Mbytes allocated -- total 13.608 Mbytes Done Total space allocated: 13.608 Mbytes; currently free: 1.525 Mbytes in 7 blocks Reading quality files ... Done Total space allocated: 13.608 Mbytes; currently free: 1.525 Mbytes in 7 blocks Testing ends ... Done Total space allocated: 13.608 Mbytes; currently free: 1.525 Mbytes in 7 blocks 4.536 Mbytes allocated -- total 18.144 Mbytes Finding words ... 0 297447 10 721009 20 27544 30 1985 40 330 50 119 60 58 70 25 80 16 90 10 100 3 110 5 120 1 130 3 140 1 150 1 160 2 180 2 190 2 210 2 270 1 320 1 340 1 370 1 380 2 390 1 800 1 830 1 1000 2 min no. words: 0 at 22 max no. words: 1944 at 0 avg no. words: 0.011.088 Mbytes allocated -- total 29.232 Mbytes 3.024 Mbytes allocated -- total 32.256 Mbytes Done Total space allocated: 32.256 Mbytes; currently free: 2.645 Mbytes in 10 blocks 2735439 words; after pruning: 2661363 Sorting words ... Done 14 2216584 15 491 16 438 17 412 18 390 19 373 20 350 21 320 22 206 23 70 24 44 25 25 26 21 27 20 28 23 29 13 30 15 Finding complement word matches ... Done Total space allocated: 32.256 Mbytes; currently free: 2.372 Mbytes in 10 blocks n_cross_matches: 11940 # pass words: 24066, #fail words: 59157 num_cand_pairs: 9752, num_dups: 2188 Finding internal word matches ... n_same_matches: 25824 , #pass words: 25824, #fail words: 30565 num_cand_pairs: 23951, num_dups: 13813 Done Total space allocated: 32.256 Mbytes; currently free: 1.968 Mbytes in 10 blocks Finding duplicates ... Done Total space allocated: 32.256 Mbytes; currently free: 19.488 Mbytes in 12 blocks SWATTING ................................. Done Total space allocated: 32.256 Mbytes; currently free: 19.198 Mbytes in 16 blocks Quickalign: 4195 successes, 252 failures 30938 SWAT alignments performed. 3900 pairs have score >= 30 Finding vector matches ... Done Total space allocated: 32.256 Mbytes; currently free: 19.883 Mbytes in 14 blocks Making reversed pairs ... Done Total space allocated: 32.256 Mbytes; currently free: 19.564 Mbytes in 14 blocks Finding starts/ends ... Done Total space allocated: 32.256 Mbytes; currently free: 19.564 Mbytes in 14 blocks Total # pairs: 8000, size: 0.352 Mbytes Finding segments ... Done Total space allocated: 32.256 Mbytes; currently free: 19.504 Mbytes in 14 blocks Finding more vector ... Done Total space allocated: 32.256 Mbytes; currently free: 19.504 Mbytes in 14 blocks Finding mean offsets ... Done Total space allocated: 32.256 Mbytes; currently free: 19.504 Mbytes in 14 blocks Finding near duplicates ... Done Total space allocated: 32.256 Mbytes; currently free: 19.504 Mbytes in 14 blocks Finding self matches ... Done Total space allocated: 32.256 Mbytes; currently free: 19.504 Mbytes in 14 blocks Finding node rejects ... Done Total space allocated: 32.256 Mbytes; currently free: 19.504 Mbytes in 14 blocks Finding truncated pairs ... Done Total space allocated: 32.256 Mbytes; currently free: 19.504 Mbytes in 14 blocks Finding multi-segment reads ... Done Total space allocated: 32.256 Mbytes; currently free: 19.504 Mbytes in 14 blocks Finding starts/ends ... Done Total space allocated: 32.256 Mbytes; currently free: 19.504 Mbytes in 14 blocks Finding deletions ... Done Total space allocated: 32.256 Mbytes; currently free: 19.504 Mbytes in 14 blocks Finding extents ... Done Total space allocated: 32.256 Mbytes; currently free: 19.136 Mbytes in 14 blocks Printing qualities ... Done Total space allocated: 32.256 Mbytes; currently free: 19.136 Mbytes in 14 blocks Computing LLR scores ... Done Total space allocated: 32.256 Mbytes; currently free: 19.136 Mbytes in 14 blocks Finding extents ... Done Total space allocated: 32.256 Mbytes; currently free: 19.136 Mbytes in 14 blocks Computing LLR scores ... Done Total space allocated: 32.256 Mbytes; currently free: 19.136 Mbytes in 14 blocks Printing qualities ... Done Total space allocated: 32.256 Mbytes; currently free: 19.136 Mbytes in 14 blocks Printing coverage ... Done Total space allocated: 32.256 Mbytes; currently free: 19.136 Mbytes in 14 blocks Finding blocked reads ... Done Total space allocated: 32.256 Mbytes; currently free: 19.136 Mbytes in 14 blocks Merging ... Pass: 1 #reads #contigs (not counting singlets) 1 1829 2 47 3 20 4 18 5 7 6 3 7 2 9 1 10 1 11 1 20 1 Pass: 3 #reads #contigs (not counting singlets) 1 524 2 461 3 98 4 37 5 17 6 10 7 7 8 2 9 2 10 1 12 2 22 1 Pass: 4 #reads #contigs (not counting singlets) 1 466 2 453 3 107 4 42 5 17 6 13 7 8 8 2 9 2 10 1 12 1 13 1 23 1 Read equivalence class histogram: 1 3129 2 442 3 107 4 38 5 16 6 13 7 8 8 2 9 2 10 1 12 1 13 1 23 1 Done Total space allocated: 32.256 Mbytes; currently free: 18.655 Mbytes in 18 blocks Merging chimeras ... Done Total space allocated: 32.256 Mbytes; currently free: 18.655 Mbytes in 19 blocks Merging other singletons ... LLR_join_cutoff: -60 Done Total space allocated: 32.256 Mbytes; currently free: 18.655 Mbytes in 19 blocks Finding extents ... Done Total space allocated: 32.256 Mbytes; currently free: 18.656 Mbytes in 19 blocks Making contig sequences ... Done Total space allocated: 32.256 Mbytes; currently free: 16.044 Mbytes in 595 blocks Aligning reads to contigs ... Done Total space allocated: 32.256 Mbytes; currently free: 15.939 Mbytes in 598 blocks Revising contigs ... Done Total space allocated: 32.256 Mbytes; currently free: 14.767 Mbytes in 593 blocks 2405 old base segments, 0.058 Mb 39103 new base segments, 0.938 Mb total old contig length 537541, 1.613 Mb total new contig length 536941, 1.611 Mb Aligning reads to contigs ... Done Total space allocated: 32.256 Mbytes; currently free: 14.767 Mbytes in 594 blocks Finding unaligned pairs ... Done Total space allocated: 32.256 Mbytes; currently free: 14.767 Mbytes in 594 blocks Total # segment blocks: 1, size: 0.060 Mbytes Printing contigs ... Done Total space allocated: 32.256 Mbytes; currently free: 14.731 Mbytes in 593 blocks Total # segment blocks: 1, size: 0.060 Mbytes Writing contigs ... Done Total space allocated: 32.256 Mbytes; currently free: 14.731 Mbytes in 594 blocks Mapping reads by name ... Done Total space allocated: 32.256 Mbytes; currently free: 14.731 Mbytes in 594 blocks Checking pairs ... Done Total space allocated: 32.256 Mbytes; currently free: 14.731 Mbytes in 594 blocks Total space allocated: 32.256 Mbytes; currently free: 14.731 Mbytes in 594 blocks Total # pairs: 8000, size: 0.352 Mbytes Total # segment blocks: 1, size: 0.060 Mbytes Total # diffs: 153838, in 8244 lists, size: 0.154 Mbytes Total # tags: 633, size: 0.028 Mbytes Library sequence assembly runtime: 0H:1M:8S Contig membership alignment extraction runtime: 0H:0M:1S Assembly runtime: 0H:1M:9S