FA07 and NM06 common map markers. Data table for markers common to both C. frutescens acc. BG2814-6 X C. annuum ‘ NuMex RNaky’ (FA07) and C. annuum
‘Early Jalapeño ’ X C. annuum ‘CM344’ (NM06) maps with respective map positions.

Contig Name = Original contig designation created during EST and Pepper Chip assemblies (Ashrafi et al. 2012, Hill et al., 2013).
ContigID = Four letter code assigned to contigs.
Chr = Pepper chromosome designaiton according to Wu et al.2009.
FA BinID = Four letter code for the contig selected to repersent an FA07 mapped bin followed by _C to indicate that the actual haplotype is based on
the consensus haplotype of all markers within that genetic bin.
FA LG = FA07 map linkage group number based on pepper chromosome number.
FA Pos(cM) = Position in cM on the FA07 linkage group (linkage groups oriented based on the Wu et al., 2009 pepper COSII map).
NM BinID = Four letter code for the contig selected to repersent a NM06 mapped bin followed by _C to indicate that the actual haplotype is based on
the consensus haplotype of all markers within that genetic bin.
NM LG = NM06 linkage group number based on pepper chromosome number.
NM Pos = Position in cM on the NM06 linkage group (linkage groups oriented based on the Wu et al., 2009 pepper COSII map).


Wu, F., Eannetta, N. T., Xu, Y., Durrett, R., Mazourek, M., Jahn, M. M., & Tanksley, S. D. (2009). A COSII genetic map of the
pepper genome provides a detailed picture of synteny with tomato and new insights into recent chromosome evolution in the genus
Capsicum. Theoretical and applied genetics, 118(7), 1279-1293.

Ashrafi, H., Hill, T., Stoffel, K., Kozik, A., Yao, J., Chin-Wo, S. R., & Van Deynze, A. (2012). De novo assembly of the pepper
transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes. BMC genomics, 13(1), 571.

Hill TA, Ashrafi H, Reyes-Chin-Wo S, Yao J, Stoffel K, Truco M-J, et al. (2013). Characterization of Capsicum annuum Genetic
Diversity and Population Structure Based on Parallel Polymorphism Discovery with a 30K Unigene Pepper GeneChip. PLoS ONE 8(2):
e56200. doi:10.1371/journal.pone.0056200.