For details of how the annotation was produced please refer to the supplemental material enclosed with the citation below.



s.pimp.maker.proteins.FINAL.faa
Predicted protein set

s.pimp.maker.proteins.LONGEST.FINAL.faa
Non-redudant protein file containing a single isoform (longest) per gene. If a gene contains non-overlapping isoforms then the longest of each is taken. This file is useful for orthologous analysis using OrthoMCL or orthofinder.

s.pimp.maker.transcripts.FINAL.noUTR.fna
MAKER-predicted transcript (DNA) with UTR sequences removed

s.pimp.maker.transcripts.FINAL.UTR.fna
MAKER-predicted transcript (DNA) with UTR sequences.

s.pimp.mgm.FINAL.gff
MAKER-generated gene model annotation file without evidence info.

s.pimp.mgm.FINAL.gt_tidy_sort.gff
MAKER-generated gene model annotation file without evidence info. The file was tidied up using GenomeTools.



Citation:
Razali R, Bougouffa S, Morton MJL, Lightfoot DJ, Alam I, Essack M, Arold ST, Kamau AA, Schmöckel SM, Pailles Y, Shahid M, Michell CT, Al-Babili S, Ho YS, Tester M, Bajic VB and Negrão S (2018) The Genome Sequence of the Wild Tomato Solanum pimpinellifolium Provides
Insights Into Salinity Tolerance. Front. Plant Sci. 9:1402. doi: 10.3389/fpls.2018.01402