Eggplant_V4 folder
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Eggplant_V4.fa: Multi fasta files with the eggplant chromosomes (1 to 12 and  chr 0)
Eggplant_V4.chromosomes.fa: Multi fasta files with the eggplant chromosomes (1 to 12)
Eggplant_V4_chr0.fa: Eggplant chromosome 0


Annotation_V4 Folder
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SMEL_V4_function_IPR.gff3: GFF version 3 file containing gene models, together with putative function and Interproscan tags.
SMEL_V4_CH0_function_IPR.gff3: GFF version 3 file containing gene models in CH0, together with putative function and Interproscan tags.
SMEL_V4_CH_function_IPR.gff3: GFF version 3 file containing gene models in chromosomes, together with putative function and Interproscan tags.
Eggplant_V4.repeats.gff3: GFF version 3 file containing repetitive regions identified with RepeatMasker. 
SMEL_V4_cds.function.fa: fasta-format sequence file of CDS sequences, together with putative function.
SMEL_V4_protein.function.fa: fasta-format sequence file of protein sequences, together with putative function.
Eggplant_V4_Interproscan.tsv: Interproscan results
V3_to_V4.txt: conversion of gene models between V3 and V4

Pangenoma Folder
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Eggplant_pangenome.fa: Multi fasta files with the eggplant pangenome sequences
Pangenoma_Function_Interpro.gff: Pangenome GFF version 3 file containing gene models, together with putative function and Interproscan tags.
Pangenoma_proteins_Function.fa: Pangenome fasta-format sequence file of protein sequences, together with putative function.
Pangenoma_transcripts_Function.fa: Pangenome fasta-format sequence file of CDS sequences, together with putative function.

Panplastome Folder
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Plastome sequences and gff3 files for 26 eggplant accessions (see List_of_Plastomes.txtfor more infos).