<?xml version="1.0" encoding="ISO-8859-1"?>

<game version="1.1">
  <!-- Curational annotations from Apollo -->
  <!-- Analysis of: C08HBa0197J17.1 -->
  <!-- Original input read from /Users/mueller/SGN/tomato_bac_training_set/cleaned_bacs2/C08HBa0197J17.clean.xml -->
  <!-- Saved on Sun Oct 08 02:36:11 GMT 2006 -->
  <!-- Apollo version: Apollo Genome Annotation and Curation Tool, version 1.6.5, last updated Jun 27 2006, 15:20 -->
  
  <seq focus="true" id="C08HBa0197J17.1" length="4574">
    <name>C08HBa0197J17.1</name>
    <residues>CAATTTGAATAATATTATTTGAATTACGAGTTTGATAAAAAAAGAGGTTTATTTCTCTCTTTTTTACAAATTTTATTTTATAATTTTTATATTTTAATATTTAAAATTTACGATCAAACCATAGCAATTAAATAGGACAAATACTTCCAAGTATTTACCATTTTGCTATTGGCCTAGTTCCCTCCAATTTGAAGTTGCAATAGGAGGGTTTTAGGAAGGGCTTATTTTTTTTTCTCTTGGAGTTGAGAAATGGCATCGTCTTCTTCGACATCATCTGGACCAGAAATCCCTTGGGTTGAGAAGTTTCGACCCACCAAAGTATCCGACATCGTCGGCAATGAAGATGCAGTTGCCAGGCTTCAAGTTATTGCTCGTGATGGAAACATGCCCAATCTTATTTTAGCCGTAAGAAATTTCCCCAATTTTGCTACTTTGTCATTATTTGTTGCCCCATTTGTGAAAAAATAAGAAATTTTAGCTTATGGGGTTGAGGTATTTGTCATATATAGTATTTCTGTTACATAAAAAGACTTAACTTTTTGTGCAATTTTGTGGATGATGGGGAACTTTTATTTCTAGGTTTGAGGGTTAGTGTTGAGATTAGTAAACACAGCTACTGTGAATTGTTAAGTATTTCTGTTACAAAAAGGACTGATTTTTTGTTCAATGTATGAGTAATAAGAAGCTTTATTTTCTGGGTTTGAGGTTTAGTGTTGAGATTTGTTCACCCAGCTTTCCAAATTTTAATTGTGCTTCTCAATTTGCTTCTGTTTCTCTTGTTTTGTTGCCCCATTTGTGAAAAATAAGAAACTTTGACTGTTGGGGTTGAAGTATTTTGCAGATAGAGCATTGTTGCTTATTTCTGTGACAAAAAAAGACAACTTTTTGTGGATGAGGAGAAACTTTATTTTCTGGGTTTGATGTTTAGTATTGAGATAGACCCAGCTTGTATTGTTTATTGATTTCACCGGATATAGAAAAGAAAATGAAAAAAGTGTTAAGAACTTTCATGTGGTGATCCTAACAAGCTTGAACTATGTTAGATGCTATTACTATATGTGATTTATGCCAAGTGTAGGAAAAAAGAACTAACTTTTTGTTCCATGTATGGTTAATGAATAAACTATTGCGAGGTTTGTGGTTTACTGCAGAGAGTAGTAGAGGGACAGACCTCTTCTATAATGGGTTCTATATTTGGGTTGTCAAAAAGTAAAAGAGAAACATGTTGTTTATAATTGCTTGCGGGGTTATTCACAAGCTTGAAATATGTCATAAGCTATTAAATATATCAAGATTATGTAAAATGAAGAGAAGTTCTATTTTTTGCTTCATTGGATGTTATAAAACTTTATTTTATGGGTTTAAGGGTAATAATTTTTATTTTTTAAAAAAAATATTTAAATATGAGCTCCATAGTGAAAGTCTAATCATGAAATGGTTATGAAGATAATCAATCTGAGAGGGAGGAGTATATTTTCTTGGGGGCCTAGTGGGAAATGATTTTTTTTCGGCAAGTCATGCTATGAAAAATTGTTTGAGAAAGTTGAGTGCTTCAGAAGTGGCCATGGAAGCTTATCAGGGATCAAAAGCTCCATACAATGTTCTTACTTTTGTTAGATTGTAGATTTACTACTATAATATCAGTTTTATTCCCTTGCGGTCAATAAGTCCTGAATATGAACCCTTTTTTATTCCTTTTGTCATGAAAATCTTAATAGTCCTTGCTTAGTAACCAGACTTCTACAGTTGCATGTATATATATCTGCAAAAGTATGCACTCGTGTGAGGTGAGCTTATGCCAGATGTTGGATGCGGATTCTATTTCCTCTTGTTCATTCTCTATTTTGTGGGAGAATAGACTTCCAGTTTCAAATACAATCTTGTTATTGATAAATCTTGAATTGGATCCTTGAGTAATATTGATTGGTTACTTTCAGTGTGTTAATTGATGAGAATGTGTAAAAACAAAGTAGTTATTGCTAGTTTTCCTGGAAGTTGATCATTTTTACTCCAATGCACATCTAATTTAGGACTTTCCTCCACCAAAATGTTTGTCCATTTGTGGTTACATTAACTTGGCAAAAGCAGTTTGCTCATAGCAGCAGTGGAGCTCAATTAAAAACTTAGTTCGAGTAAGTATATTAGGAAGGTGGACAAGACTTTACAGGATGTCGTTCACTGGAAAGTTATTGAAAAATCATGTCAAACAAATATTACTTTTCACATGTTTATCCAGTCCAATCCATGAAAGAGAAGAAAAGATACATCTCTAAAAGATTTTGCGCATGGTTTCTTCATGCTGGATATTCAATTCTATTTAAAACTCCTACAGGGTCCTCCGGGTACTGGCAAAACCACTAGTATATTGGCTCTTGCTCATGAGCTTTTGGGACCAAACTATAAGGAGGCTGTGTTGGAGCTAAATGCATCAGATGATAGGTATATTGAGTGCTTGATTAGATATAAAAAACTCTTTGTTTCACATGGTTAGTTCTTGCTTCTGTAAAATGCTTAGAAGCTTTAATGTTTCTTGTGCAGGGGCATCGATGTTGTTAGAAACAAAATCAAGATGTTTGCTCAGAAGAAAGTTACTCTACCCCCTGGTCGGCACAAAATAATTATTTTGGACGAGGCTGACAGGTTCGAAATGTTCTCCTGTAAATTTGGAAATCATTTGTTTGCCGAGAGGTTGAAGTCATGGAAAAAAAACTGTTCATATTTCTATCTCTTCCACACTATTGCTATCAGTTTGATTGATTCTCAGGATTAGTAAACTATCTATTGACCTGCATTTTCTGCAGTAGCTCAATCATTTTAGTTTTCACTGTTGGGTGTGGGAATTTTATTGCCATGTTTCTTTAATTTTTAGCATGACATCTGGAGCTCAGCAAGCACTGAGGAGGACAATGGAAATATATTCGAACTCCACTCGCTTTGCTCTTGCCTGCAATACTTCTTCGAAGATTATCGAGCCTATTCAAAGTAGATGTGCCCTGGTTCGATTTGCAAGATTATCTGACCAAGAGATCCTTGGACGCCTTATGGCTGTAGTTGCAGCAGAAAAGGTACTAGCAATCTTAATCCTCGACATACATGCTATTCTTTTGGTGTTCTTCTTGCTGCTTCTTAGTGGTTTCTTTTGATCCTTGTGTTTAATCAACAATTTTTGTATGCATAATGAGGCAGGTACCATGTTATTAAACCTTAATCTGTTGCAGCACATTGAACCTCCAGCTGTTCTGCAAAATTTCATGCCTTTGTTTGCTAATTAGTTTGGTTAAGGAGTATCCTGGTAATTGGTATTTATGTTCTGTCTTTAAAAAATGTCTAACCAAAATTATGAGCTCAAGGGTAGGAACTTTTCTATACCCCTTCAGCCTCACCAGCATTGGGGAAGTTTCATCACTTACTCGAATCACTTCAATATGCGATCATCTGTGTTTTTACCAAAGTCTTTGCGGAAACATATTGGTGGAAGGGAGGGAAGAGATTCATGCTACAGAGATTTACCTCTTGCAGGTTGCTTATGTACCTGAAGGCCTTGAAGCTATTATATTTACTGCTGATGGAGACATGAGACAGGGCTTAAATAACTTACAAGCAACACATAGTGGATTTGGTTTTGTCAACCAAGAGAATGTTTTCAAGGTTACAAGGCTCACATATCTCTTTGATATAGTAATTCATCGTTTGACAGAGTCCCCCCTTGATGATTCCATTCTCTCTTGTTGAATGCTAGGTTTGTGACCAACCTCATCCATTGCATGTGAAGAATATGGTGCGGAATGTCCTCGAAGGAAAATTTGATGATGCATGTGCTGGTCTAAAGGCACTGTATGACCTGGGATATTCCCCCACTGACATCATCACAACCCTCTTCCGAATTATAAAGAACTACGATATGGCAGAATATGTAAAGCTGGAATTCTTGAAGGTTTATCTCTACTAATTCTGAAAACTTTCATCTTTATAAGCAATCTTCTGTTCAGCACCATTTATATATTTCTGCTGATATAACAGGAAACTGGTTTCGCACACATGAGGATCTGCGATGGGGTCGGTTCATATCTCCAAATGTGTGGTCTGCTGGCTAAACTATCATTGGTTCGAGAAACAGCTAAGGCTTCATGATGAGACAGGCATTGAAGTCCTAATCAACTGAGATGAGTCCTCGATGGTCTTCCATTTTATCGCGTTTTCCTAGCTTCTCTTGAAAATAGCTAGCATTTTATATCAAGTGTTAGCCTGTAGAATTGCAAAATTGTTACTGCAATGAGGAAAATGATTGTTGAACCATTATGCATTTCAATTCTACAAATGTGTAAAGGCAGCATTTTGACTCTACTCCATGAATTAACATGTTAGACAAGGACCATATCTTTCTTTTTTTTTTCTGATTGGTATAAGCGGATTAAGAAAAACGTCTGTTCTAATAATTCTAATAATACGAGTCGACATGTGATGTGTGAGTTTGATGCATATTATAGGCTCACAACTTTGAGTCTAGTCACAAACATAAGCCATAATATTTAATGCAGGGTTTGAATTTGTGACCTACGATACAAGTTCTTCGA</residues>
  </seq>
  
  <map_position seq="C08HBa0197J17.1">
    <span>
      <start>1</start>
      <end>4574</end>
    </span>
  </map_position>
  
  <annotation id="gene_1">
    <name>gene_1</name>
    <type>gene</type>
    <feature_set id="gene_1">
      <name>GT_PGL_1_AGS_1</name>
      <type>transcript</type>
      <property>
        <type>source</type>
        <value>GenomeThreader</value>
      </property>
      <property>
        <type>seq_id</type>
        <value>C08HBa0197J17.1</value>
      </property>
      <feature_span>
        <type>polypeptide</type>
        <seq_relationship seq="C08HBa0197J17.1" type="query">
          <span>
            <start>250</start>
            <end>4130</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span>
        <type>exon</type>
        <seq_relationship seq="C08HBa0197J17.1" type="query">
          <span>
            <start>201</start>
            <end>405</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span>
        <type>exon</type>
        <seq_relationship seq="C08HBa0197J17.1" type="query">
          <span>
            <start>2333</start>
            <end>2439</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span>
        <type>exon</type>
        <seq_relationship seq="C08HBa0197J17.1" type="query">
          <span>
            <start>2539</start>
            <end>2640</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span>
        <type>exon</type>
        <seq_relationship seq="C08HBa0197J17.1" type="query">
          <span>
            <start>2870</start>
            <end>3065</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span>
        <type>exon</type>
        <seq_relationship seq="C08HBa0197J17.1" type="query">
          <span>
            <start>3520</start>
            <end>3648</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span>
        <type>exon</type>
        <seq_relationship seq="C08HBa0197J17.1" type="query">
          <span>
            <start>3740</start>
            <end>3934</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span>
        <type>exon</type>
        <seq_relationship seq="C08HBa0197J17.1" type="query">
          <span>
            <start>4021</start>
            <end>4374</end>
          </span>
        </seq_relationship>
      </feature_span>
    </feature_set>
  </annotation>
  
  
  
  
  <seq id="SGN-U319007" length="0">
    <name>SGN-U319007</name>
  </seq>
  
  <seq id="SGN-U315960" length="0">
    <name>SGN-U315960</name>
  </seq>
  
  <seq id="SGN-U335407" length="0">
    <name>SGN-U335407</name>
  </seq>
  
  <seq id="SGN-U326685" length="0">
    <name>SGN-U326685</name>
  </seq>
  
  <seq id="SGN-U321687" length="0">
    <name>SGN-U321687</name>
  </seq>
  
  <seq id="SGN-U329914" length="0">
    <name>SGN-U329914</name>
  </seq>
  
  <seq id="SGN-U324954" length="0">
    <name>SGN-U324954</name>
  </seq>
  
  <seq id="SGN-U323181" length="0">
    <name>SGN-U323181</name>
  </seq>
  
  <seq id="SGN-U323180" length="0">
    <name>SGN-U323180</name>
  </seq>
  
  <seq id="SGN-U322792" length="0">
    <name>SGN-U322792</name>
  </seq>
  
  <seq id="SGN-U324174" length="0">
    <name>SGN-U324174</name>
  </seq>
  
  <seq id="SGN-U324175" length="0">
    <name>SGN-U324175</name>
  </seq>
  
  <seq id="SGN-U324348" length="0">
    <name>SGN-U324348</name>
  </seq>
  
  <seq id="Contig1454" length="0">
    <name>Contig1454</name>
  </seq>
  
  <seq id="Contig1836" length="0">
    <name>Contig1836</name>
  </seq>
  
  <seq id="Contig1268" length="0">
    <name>Contig1268</name>
  </seq>
  
  <seq id="Contig52" length="0">
    <name>Contig52</name>
  </seq>
  
  <seq id="Contig151" length="0">
    <name>Contig151</name>
  </seq>
  
  <seq id="Contig153" length="0">
    <name>Contig153</name>
  </seq>
  
  <seq id="Contig1209" length="0">
    <name>Contig1209</name>
  </seq>
  
  <seq id="Contig1227" length="0">
    <name>Contig1227</name>
  </seq>
  
  <seq id="Contig1216" length="0">
    <name>Contig1216</name>
  </seq>
  
  <seq id="Contig605" length="0">
    <name>Contig605</name>
  </seq>
  
  <seq id="Contig104" length="0">
    <name>Contig104</name>
  </seq>
  
  <seq id="Contig496" length="0">
    <name>Contig496</name>
  </seq>
  
  <seq id="hind_R=439" length="0">
    <name>hind_R=439</name>
  </seq>
  
  <seq id="Contig1202" length="0">
    <name>Contig1202</name>
  </seq>
  
  <seq id="Contig1231" length="0">
    <name>Contig1231</name>
  </seq>
  
  <seq id="Contig562" length="0">
    <name>Contig562</name>
  </seq>
  
  <seq id="Contig28" length="0">
    <name>Contig28</name>
  </seq>
  
  <seq id="hind_R=1420" length="0">
    <name>hind_R=1420</name>
  </seq>
  
  <seq id="Contig406" length="0">
    <name>Contig406</name>
  </seq>
  
  <seq id="Contig436" length="0">
    <name>Contig436</name>
  </seq>
  
  <seq id="Contig386" length="0">
    <name>Contig386</name>
  </seq>
  
  <seq id="Contig860" length="0">
    <name>Contig860</name>
  </seq>
  
  <seq id="Contig1192" length="0">
    <name>Contig1192</name>
  </seq>
  
  <seq id="Contig481" length="0">
    <name>Contig481</name>
  </seq>
  
  <seq id="Contig369" length="0">
    <name>Contig369</name>
  </seq>
  
  <seq id="Contig357" length="0">
    <name>Contig357</name>
  </seq>
  
  <seq id="Contig92" length="0">
    <name>Contig92</name>
  </seq>
  
  <seq id="Contig402" length="0">
    <name>Contig402</name>
  </seq>
  
  <seq id="Contig1272" length="0">
    <name>Contig1272</name>
  </seq>
  
  
  
  
</game>
