##gff-version 3
##sequence-region C12HBa0260C13.1 1 139554
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	4	624	3684	+	0	ID=Contig378_alignment_1;Target=Contig378 743 1370 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	458	691	1106	-	0	ID=eco_R%3D1260_alignment_1;Target=eco_R%3D1260 313 540 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	712	1187	2733	+	0	ID=Contig1208_alignment_1;Target=Contig1208 169 654 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	1232	1457	244	-	0	ID=Contig390_alignment_1;Target=Contig390 4891 5108 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	2346	2798	2341	-	0	ID=hind_R%3D1782_alignment_1;Target=hind_R%3D1782 1 460 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	2866	3234	1300	-	0	ID=Contig252_alignment_1;Target=Contig252 708 1076 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	3911	4153	312	-	0	ID=Contig1331_alignment_1;Target=Contig1331 650 891 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	6234	7190	2207	-	0	ID=Contig605_alignment_1;Target=Contig605 3501 4461 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	7215	8026	1658	-	0	ID=Contig605_alignment_2;Target=Contig605 1809 2628 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	8095	9214	4018	-	0	ID=Contig69_alignment_1;Target=Contig69 519 1636 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	9224	9654	772	+	0	ID=hind_R%3D184_alignment_1;Target=hind_R%3D184 263 700 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	9279	10374	4043	-	0	ID=Contig1198_alignment_1;Target=Contig1198 4 1084 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	10149	12423	10618	-	0	ID=Contig466_alignment_1;Target=Contig466 694 3007 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	12439	13242	1063	-	0	ID=Contig605_alignment_3;Target=Contig605 1001 1804 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	13940	14558	255	-	0	ID=Contig1211_alignment_1;Target=Contig1211 24 644 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	14585	15082	1047	-	0	ID=Contig1331_alignment_2;Target=Contig1331 2244 2746 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	14877	15320	2377	-	0	ID=hind_R%3D1782_alignment_2;Target=hind_R%3D1782 2 460 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	15441	15599	289	-	0	ID=Contig388_alignment_1;Target=Contig388 1090 1240 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	15472	15621	412	-	0	ID=Contig388_alignment_2;Target=Contig388 919 1060 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	17616	17795	1416	+	0	ID=Contig42_alignment_1;Target=Contig42 807 983 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	17797	17840	346	-	0	ID=Contig32_alignment_1;Target=Contig32 3271 3314 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	25093	25153	384	+	0	ID=Contig389_alignment_1;Target=Contig389 1557 1617 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	25162	25318	523	-	0	ID=Contig1255_alignment_1;Target=Contig1255 334 493 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	25339	25978	997	+	0	ID=Contig390_alignment_2;Target=Contig390 5561 6218 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	26224	26387	475	+	0	ID=Contig390_alignment_3;Target=Contig390 6521 6687 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	26810	26870	282	-	0	ID=Contig134_alignment_1;Target=Contig134 4296 4356 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	26921	27070	366	-	0	ID=Contig390_alignment_4;Target=Contig390 4900 5049 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	29200	30562	9971	-	0	ID=Contig442_alignment_1;Target=Contig442 1 1347 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	30620	30697	288	-	0	ID=Contig625_alignment_1;Target=Contig625 1 75 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	30633	30917	899	-	0	ID=Contig389_alignment_2;Target=Contig389 1336 1619 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	30943	33530	21662	+	0	ID=Contig29_alignment_1;Target=Contig29 3 2611 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	32435	35636	10305	+	0	ID=Contig1833_alignment_1;Target=Contig1833 3659 6881 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	34639	35895	4733	+	0	ID=Contig1833_alignment_2;Target=Contig1833 5883 7138 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	35698	36032	2117	+	0	ID=Contig559_alignment_1;Target=Contig559 1 334 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	35927	36149	363	-	0	ID=Contig497_alignment_1;Target=Contig497 240 464 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	36905	38243	9908	-	0	ID=Contig442_alignment_2;Target=Contig442 1 1347 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	38301	38378	302	-	0	ID=Contig625_alignment_2;Target=Contig625 1 75 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	45859	46631	4102	+	0	ID=Contig390_alignment_5;Target=Contig390 6117 6872 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	46177	46771	2913	-	0	ID=Contig134_alignment_2;Target=Contig134 4367 4929 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	46772	46822	232	-	0	ID=Contig1233_alignment_1;Target=Contig1233 1458 1508 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	46823	46940	681	-	0	ID=Contig4_alignment_1;Target=Contig4 4261 4378 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	46942	52290	35314	-	0	ID=Contig4_alignment_2;Target=Contig4 2801 8145 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	52288	53004	3277	-	0	ID=Contig1233_alignment_2;Target=Contig1233 747 1462 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	58673	59080	2588	+	0	ID=Contig1002_alignment_1;Target=Contig1002 980 1392 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	59075	65298	48545	-	0	ID=Contig1833_alignment_3;Target=Contig1833 1586 7820 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	65294	65921	4381	-	0	ID=Contig1833_alignment_4;Target=Contig1833 7189 7820 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	66490	66784	830	-	0	ID=Contig448_alignment_1;Target=Contig448 4 303 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	67127	67286	275	+	0	ID=Contig430_alignment_1;Target=Contig430 45 208 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	67145	67492	491	-	0	ID=Contig415_alignment_1;Target=Contig415 639 988 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	67215	68752	4179	+	0	ID=Contig1271_alignment_1;Target=Contig1271 34 1563 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	68671	68933	550	-	0	ID=Contig1917_alignment_1;Target=Contig1917 323 592 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	69248	69933	1099	+	0	ID=Contig390_alignment_6;Target=Contig390 5533 6218 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	69280	69933	1083	+	0	ID=Contig390_alignment_7;Target=Contig390 5567 6218 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	70177	70344	500	+	0	ID=Contig390_alignment_8;Target=Contig390 6520 6687 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	70177	70268	249	+	0	ID=Contig390_alignment_9;Target=Contig390 6520 6610 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	70593	70718	246	-	0	ID=Contig1591_alignment_1;Target=Contig1591 160 288 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	70761	70817	292	-	0	ID=Contig1233_alignment_3;Target=Contig1233 710 766 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	70771	70854	428	-	0	ID=Contig134_alignment_3;Target=Contig134 4296 4379 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	74559	74983	1220	-	0	ID=Contig4_alignment_3;Target=Contig4 3960 4385 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	74730	78472	24977	-	0	ID=Contig4_alignment_4;Target=Contig4 362 4114 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	78457	78768	2058	+	0	ID=Contig4_alignment_5;Target=Contig4 4673 4980 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	78765	79453	4088	+	0	ID=Contig4_alignment_6;Target=Contig4 5153 5844 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	79454	79756	1898	+	0	ID=Contig4_alignment_7;Target=Contig4 5790 6092 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	79783	80249	1924	+	0	ID=Contig4_alignment_8;Target=Contig4 8330 8810 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	80170	80556	2040	-	0	ID=Contig58_alignment_1;Target=Contig58 3494 3858 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	80527	81210	4591	-	0	ID=Contig58_alignment_2;Target=Contig58 492 1178 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	81206	81365	1038	+	0	ID=Contig9_alignment_1;Target=Contig9 359 518 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	81320	82347	5773	-	0	ID=Contig4_alignment_9;Target=Contig4 3696 4717 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	82315	83284	5891	-	0	ID=Contig1054_alignment_1;Target=Contig1054 141 1093 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	84066	85844	2232	+	0	ID=Contig390_alignment_10;Target=Contig390 4880 6683 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	86254	86321	281	-	0	ID=Contig1233_alignment_4;Target=Contig1233 712 777 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	86277	87219	3505	-	0	ID=Contig134_alignment_4;Target=Contig134 3430 4379 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	87217	87808	1788	+	0	ID=Contig1233_alignment_5;Target=Contig1233 744 1364 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	87919	89714	9183	-	0	ID=Contig1200_alignment_1;Target=Contig1200 1 1824 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	88071	90376	5826	-	0	ID=Contig390_alignment_11;Target=Contig390 1402 3740 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	90368	91327	4675	+	0	ID=Contig134_alignment_5;Target=Contig134 2839 3804 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	91330	92562	3656	+	0	ID=Contig1233_alignment_6;Target=Contig1233 301 1561 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	92490	92846	1356	-	0	ID=Contig537_alignment_1;Target=Contig537 1 358 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	92761	94171	2824	+	0	ID=Contig1233_alignment_7;Target=Contig1233 1800 3248 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	94187	94543	609	-	0	ID=Contig27_alignment_1;Target=Contig27 670 1025 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	94673	95192	1813	+	0	ID=Contig2030_alignment_1;Target=Contig2030 238 754 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	95172	95382	479	+	0	ID=Contig378_alignment_2;Target=Contig378 2 227 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	95342	95700	1889	+	0	ID=Contig1299_alignment_1;Target=Contig1299 1 362 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	95890	96231	1617	+	0	ID=Contig1299_alignment_2;Target=Contig1299 401 722 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	96204	96664	2827	+	0	ID=Contig378_alignment_3;Target=Contig378 817 1284 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	96664	97066	1095	+	0	ID=Contig1054_alignment_2;Target=Contig1054 139 543 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	97066	98430	1277	+	0	ID=Contig4_alignment_10;Target=Contig4 3314 4726 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	99314	100049	1253	+	0	ID=Contig4_alignment_11;Target=Contig4 4745 5457 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	100067	100786	2106	-	0	ID=Contig390_alignment_12;Target=Contig390 2546 3274 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	100790	101565	2206	+	0	ID=Contig89_alignment_1;Target=Contig89 5140 5919 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	102328	102409	340	-	0	ID=Contig1454_alignment_1;Target=Contig1454 206 285 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	102355	102426	362	+	0	ID=Contig1202_alignment_1;Target=Contig1202 24 95 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	102823	102906	309	+	0	ID=Contig2561_alignment_1;Target=Contig2561 172 270 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	102828	102888	416	+	0	ID=eco_R%3D126_alignment_1;Target=eco_R%3D126 2 62 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	102860	102933	258	-	0	ID=Contig2585_alignment_1;Target=Contig2585 378 446 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	104667	104875	1296	-	0	ID=Contig1216_alignment_1;Target=Contig1216 1 208 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	104875	105342	928	+	0	ID=Contig1250_alignment_1;Target=Contig1250 364 830 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	104906	105483	809	+	0	ID=Contig89_alignment_2;Target=Contig89 3596 4170 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	105560	105624	270	-	0	ID=Contig1561_alignment_1;Target=Contig1561 398 461 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	111789	112203	991	+	0	ID=Contig390_alignment_13;Target=Contig390 5115 5535 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	112217	112383	455	+	0	ID=Contig728_alignment_1;Target=Contig728 5 160 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	112278	112549	864	-	0	ID=Contig448_alignment_2;Target=Contig448 1 300 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	112887	113276	574	-	0	ID=Contig415_alignment_2;Target=Contig415 637 1039 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	112992	114029	3622	+	0	ID=Contig1271_alignment_2;Target=Contig1271 34 1071 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	119384	119793	2674	+	0	ID=Contig371_alignment_1;Target=Contig371 739 1154 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	119735	121768	9205	-	0	ID=Contig389_alignment_3;Target=Contig389 119 2204 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	122444	122546	421	-	0	ID=Contig60_alignment_1;Target=Contig60 5 106 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	122847	123139	874	+	0	ID=Contig889_alignment_1;Target=Contig889 1 298 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	123302	123856	2116	+	0	ID=Contig813_alignment_1;Target=Contig813 10 588 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	123859	123916	340	-	0	ID=Contig389_alignment_4;Target=Contig389 1555 1612 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	123912	124665	3272	+	0	ID=Contig1271_alignment_3;Target=Contig1271 602 1350 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	124781	125084	571	+	0	ID=Contig2603_alignment_1;Target=Contig2603 7 334 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	125266	125395	628	-	0	ID=Contig1255_alignment_2;Target=Contig1255 334 463 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	125301	125454	285	-	0	ID=Contig360_alignment_1;Target=Contig360 613 767 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	125421	126079	1089	+	0	ID=Contig390_alignment_14;Target=Contig390 5567 6219 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	126316	126487	389	-	0	ID=Contig1591_alignment_2;Target=Contig1591 463 628 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	126890	126994	387	-	0	ID=Contig134_alignment_6;Target=Contig134 4296 4399 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	133981	135766	2533	+	0	ID=Contig390_alignment_15;Target=Contig390 4880 6687 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	136196	136717	1782	-	0	ID=Contig134_alignment_7;Target=Contig134 3845 4376 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	136705	136964	822	-	0	ID=Contig134_alignment_8;Target=Contig134 3430 3695 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	136962	137239	1149	+	0	ID=Contig1233_alignment_8;Target=Contig1233 744 1023 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	137022	137292	629	+	0	ID=Contig2030_alignment_2;Target=Contig2030 377 663 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	137241	137387	520	+	0	ID=Contig1358_alignment_1;Target=Contig1358 187 330 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	137360	137555	539	+	0	ID=Contig378_alignment_4;Target=Contig378 3 205 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	137360	137497	670	+	0	ID=Contig578_alignment_1;Target=Contig578 382 516 +
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	137657	138989	7050	-	0	ID=Contig1200_alignment_2;Target=Contig1200 489 1830 -
C12HBa0260C13.1	RepeatMasker	nucleotide_motif	138997	139553	3164	-	0	ID=Contig1200_alignment_3;Target=Contig1200 1 555 -