<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-18 02:07:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLm0123M18-oFcr6/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-uHa3Bz/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-uHa3Bz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344333" ref_strand="+" ref_description="SGN-U344333        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | ubiquitin-conjugating enzyme-related, similar to ubiquitin-conjugating enzyme (GI:3319990) (Mus musculus); similar to Baculoviral IAP repeat-containing protein 6 (Ubiquitin-conjugating BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) (Homo sapiens); | chr3:5183865-5186871 FORWARD | Aliases: MJK13.1(evalue: 1e-42, score=170) genbank/nr: Ubiquitin-conjugating(evalue: 1e-44, score=183)">
      <seq>cagggtttatgcttgcaacaggtgatatgatctctcttccactagaacaggttcatccagggtatattatcccaccagatactatgaactattttcttccagaactgctttctacggggcctgttcttgcaccaggtgctatgcactatttccatcaggaaatggatcatgaactctggactcatggtccgcataacagtgcaagtctatcactccaatgcgaatcagctcctagtaaggaacaacatggaaatttaggtgaaagcctgaagaatttccgtcttttcaagaaatttgatactgttcaagatcattcaggccattacttttctggacttgcatctcatgacaacctggcctctaagagttgtgccaagaggatactggaggagtggaagatactggagaaagatttacctgataccatatttgtccgagtgtatgaaacaaggatggatctgttgagagcagtgattattggagctgatggaactccttaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-oFcr6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="14553" stop="15941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14853" g_stop="15208" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15209" i_stop="15287" i_length="79">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15288" g_stop="15351" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="420" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15352" i_stop="15557" i_length="206">
            <donor d_prob="0.805" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15641" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="504" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-U344333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14853" e_stop="15208"/>
          <exon e_start="15288" e_stop="15351"/>
          <exon e_start="15558" e_stop="15641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTTTATGCTTGCAACAGGTGATATGATCTCTCTTCCACTAGAACAGGTTCATCCAGGGTATATTATCCCACCAGATACTATGAACTATTTTCTTCCAGAACTGCTTTCTACGGGGCCTGTTCTTGCACCAGGTGCTATGCACTATTTCCATCAGGAAATGGATCATGAACTCTGGACTCATGGTCCGCATAACAGTGCAAGTCTATCACTCCAATGCGAATCAGCTCCTAGTAAGGAACAACATGGAAATTTAGGTGAAAGCCTGAAGAATTTCCGTCTTTTCAAGAAATTTGATACTGTTCAAGATCATTCAGGCCATTACTTTTCTGGACTTGCATCTCATGACAACCTGGTTAGTTTAACTGTAAGTGGTTGATAGTTTTGATTAGTCATTCATTATCTTATTTCTAAATGTTTGTTTTTCTGTATAGGCCTCTAAGAGTTGTGCCAAGAGGATACTGGAGGAGTGGAAGATACTGGAGAAAGATTTACCTGGTAACATGAGCAAATTTTCCAGTCTTTCTTAGCATTCCTACCTGATCTGTGATGATTATCTTGGCATCAAGTTATTGAAATTTGGCATACATGCTTACAGGATTTGTTTAAGTAATGAATTTCTGAGGAGCTCATAATGTGATCTGTGATAAAAATCTGCTTGTCGTATTTCATATAACCACAACTGAATGCCTTTTCATGAGCAGATACCATATTTGTCCGAGTGTATGAAACAAGGATGGATCTGTTGAGAGCAGTGATTATTGGAGCTGATGGAACTCCTTACCATG</genome_strand>
        <mrna_strand>CAGGGTTTATGCTTGCAACAGGTGATATGATCTCTCTTCCACTAGAACAGGTTCATCCAGGGTATATTATCCCACCAGATACTATGAACTATTTTCTTCCAGAACTGCTTTCTACGGGGCCTGTTCTTGCACCAGGTGCTATGCACTATTTCCATCAGGAAATGGATCATGAACTCTGGACTCATGGTCCGCATAACAGTGCAAGTCTATCACTCCAATGCGAATCAGCTCCTAGTAAGGAACAACATGGAAATTTAGGTGAAAGCCTGAAGAATTTCCGTCTTTTCAAGAAATTTGATACTGTTCAAGATCATTCAGGCCATTACTTTTCTGGACTTGCATCTCATGACAACCTG...............................................................................GCCTCTAAGAGTTGTGCCAAGAGGATACTGGAGGAGTGGAAGATACTGGAGAAAGATTTACCTG..............................................................................................................................................................................................................ATACCATATTTGTCCGAGTGTATGAAACAAGGATGGATCTGTTGAGAGCAGTGATTATTGGAGCTGATGGAACTCCTTACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-uHa3Bz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344775" ref_strand="+" ref_description="SGN-U344775        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | ubiquitin-conjugating enzyme family protein, similar to ubiquitin-conjugating enzyme GB:3319990 from (Mus musculus); contains Pfam profile PF00179: Ubiquitin-conjugating enzyme | chr1:19755040-19763142 REVERSE | Aliases: F8L10.11, F8L10_11(evalue: 3e-31, score=132) genbank/nr: Ubiquitin-conjugating(evalue: 3e-38, score=161)">
      <seq>ttccatacaagggctaatattgaacgctaagccctatttcaatgagcctggatatgccaggatgaatggctcagcctcaggggaacgaaactcactgcgctataacgagaacacttgcatttttaatctcaagacaatggtctattgtatgaggcgaccaccacagcactttgaggattttgtcatagggcattactttcaaagctgtcaagatattcttgtggcatgtaaagcatatatggaaggtgctcgtgtgggtagccttgtcagagggtgtgttctcggcgatggtggcaagggtggtgacaaaggtggttctcggagtttcaaggccatgttggcgggattcatcggggtacttgtagaggcgttcaaaaagattggttgcgaggattgtgataagtttcttcccttggcagaaaaagcgtcaaccagagcaactccagttaagatagactgatagagactgctgaccatatgtagatttcagtactgttatacacctaatgttgacaaactagttttcagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-oFcr6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="15688" stop="17184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15988" g_stop="16153" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16154" i_stop="16520" i_length="367">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16521" g_stop="16884" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="530" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-U344775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15988" e_stop="16153"/>
          <exon e_start="16521" e_stop="16884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATACAAGGGCTAATATTGAACGCTAAGCCCTATTTCAATGAGCCTGGATATGCCAGGATGAATGGCTCAGCCTCAGGGGAACGAAACTCACTGCGCTATAACGAGAACACTTGCATTTTTAATCTCAAGACAATGGTCTATTGTATGAGGCGACCACCACAGGTATATCGTTTATGACCATCAATAACTTAATGAACTTTTCAATTATGCCTTGCGATGTTTTTTCCATGCGATTTATCTGTTGGAACAGTAAAATTACAAAACTAAATTCTAACGTCTCATTAAGTAACTGAACCTTTAACATTGTAACAACAAAGTGACTAAACTTTCCTCCCTTGTAACAACAACAAAGTCATGACTATTTTGTCGATAGAGATGCAGAATTTCACCATTATAACAGTCTAGTCACAAGACTTTTCCTTATAACAACAAAACTTACTCGTCTAGGTGACTTTATTGTAATAGTTGTGTGACTTTTTCGTTCTAAATTAAGTACTACGAATTTGAACATTCTGCTTTTTTGCTGCAGCACTTTGAGGATTTTGTCATAGGGCATTACTTTCAAAGCTGTCAAGATATTCTTGTGGCATGTAAAGCATATATGGAAGGTGCTCGTGTGGGTAGCCTTGTCAGAGGGTGTGTTCTCGGCGATGGTGGCAAGGGTGGTGACAAAGGTGGTTCTCGGAGTTTCAAGGCCATGTTGGCGGGATTCATCGGGGTACTTGTAGAGGCGTTCAAAAAGATTGGTTGCGAGGATTGTGATAAGTTTCTTCCCTTGGCAGAAAAAGCGTCAACCAGAGCAACTCCAGTTAAGATAGACTGATAGAGACTGCTGACCATATGTAGATTTCAGTACTGTTATACACCTAATGTTGACAAACTAGTTTTCAGAC</genome_strand>
        <mrna_strand>TTCCATACAAGGGCTAATATTGAACGCTAAGCCCTATTTCAATGAGCCTGGATATGCCAGGATGAATGGCTCAGCCTCAGGGGAACGAAACTCACTGCGCTATAACGAGAACACTTGCATTTTTAATCTCAAGACAATGGTCTATTGTATGAGGCGACCACCACAG...............................................................................................................................................................................................................................................................................................................................................................................CACTTTGAGGATTTTGTCATAGGGCATTACTTTCAAAGCTGTCAAGATATTCTTGTGGCATGTAAAGCATATATGGAAGGTGCTCGTGTGGGTAGCCTTGTCAGAGGGTGTGTTCTCGGCGATGGTGGCAAGGGTGGTGACAAAGGTGGTTCTCGGAGTTTCAAGGCCATGTTGGCGGGATTCATCGGGGTACTTGTAGAGGCGTTCAAAAAGATTGGTTGCGAGGATTGTGATAAGTTTCTTCCCTTGGCAGAAAAAGCGTCAACCAGAGCAACTCCAGTTAAGATAGACTGATAGAGACTGCTGACCATATGTAGATTTCAGTACTGTTATACACCTAATGTTGACAAACTAGTTTTCAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-uHa3Bz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318067" ref_strand="+" ref_description="SGN-U318067        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: | Symbol: None | thioredoxin M-type 4, chloroplast (TRX-M4), nearly identical to SP:Q9SEU6 Thioredoxin M-type 4, chloroplast precursor (TRX-M4) {Arabidopsis thaliana} | chr3:5188395-5189704 FORWARD | Aliases: MJK13.20(evalue: 9e-47, score=183) genbank/nr: gi|15232567|ref|NP_188155.1| thioredoxin M-type 4, chloroplast precursor (TRX-M4) [Arabidopsis thaliana] gi|27735268|sp|Q9SEU6|THM4_ARATH Thioredoxin M-type 4, chloroplast precursor (TRX-M4) gi|7021721|gb|AAF35402.1| thioredoxin m4 [Arabidopsis thaliana] gi|14030705|gb|AAK53027.1| AT3g15360/MJK13_2 [Arabidopsis thaliana] gi|15795101|dbj|BAB02365.1| thioredoxin m4 [Arabidopsis thaliana] gi|16974519|gb|AAL31169.1| AT3g15360/MJK13_2 [Arabidopsis thaliana] gi|21593734|gb|AAM65701.1| thioredoxin m4 [Arabidopsis thaliana](evalue: 6e-45, score=183)">
      <seq>aagcccaatcaaattctactcagccacacaaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttatatgctatgtttcttctttgtcattatgtttgcttcaatgtttctgaagttcaaatttcactggtaaaattgtctctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-oFcr6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19978" stop="23033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20278" g_stop="20550" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22730" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="767" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="768" polyA_stop="781"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-U318067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20278" e_stop="20550"/>
          <exon e_start="22237" e_stop="22730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCAATCAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATGTTTGCTTCAATGTTTCTGAAGTTCAAATTTCACTGGTAAAATTGTCTCT</genome_strand>
        <mrna_strand>AAGCCCAATCAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATGTTTGCTTCAATGTTTCTGAAGTTCAAATTTCACTGGTAAAATTGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-uHa3Bz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333411" ref_strand="+" ref_description="SGN-U333411        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G27470.1 | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr4:13735005-13736524 FORWARD | Aliases: F27G19.70, F27G19_70 (evalue: 2e-16, score=82.4) genbank/nr: gi|30687607|ref|NP_194477.2| zinc finger (C3HC4-type RING finger) protein family [Arabidopsis thaliana] gi|27311647|gb|AAO00789.1| putative RING zinc finger protein [Arabidopsis thaliana] gi|30023720|gb|AAP13393.1| At4g27470 [Arabidopsis thaliana](evalue: 2e-14, score=82.4)">
      <seq>tggaaaaaaatgatatggagaatatgactgggaatacatgtcaattattttatacaaacaagttctccaaatccatggatcctaatggatgtttgagtgttttaacccaattaataatccaggtttatatattcaattttggaaagcaatcataaattatttctctttttcataacttgaactactatattttttcaacaaatggtttcgagataggccagactcaagctagtaaaatgaaactttgtagggcattgttttagtgcttgattaaagaggtgtttaaattgacatgattttgtatccaatccatactaattgctttcatactctcactcccatttgattcttaaacagaaagaaggagaaaacaatgagccgcttttctgattaatccgcgaagaccaaactaattatcactcatcaaaagtttgttagtcccatttgtgcatttcacgtagtttgcttgctcatacacatatgtttgatttctatagtgcattttgtgattgtgaggtccgtgattatttgtgaatttcatctttaatagatttcatgactatcacccgcgttgggtctgatgaagatatttccgttgataagaaaaactcagttccatttccaacatcagcctctgataatgaatcttcctgttttgattgcaacatttgccttgactcagcacatgatcctgtagtcaccctctgcggtcacctctactgctggccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-oFcr6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="24760" stop="26091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25060" g_stop="25791" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-U333411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25060" e_stop="25791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAAAAATGATATGGAGAATATGACTGGGAATACATGTCAATTATTTTATACAAACAAGTTCTCCAAATCCATGGATCCTAATGGATGTTTGAGTGTTTTAACCCAATTAATAATCCAGGTTTATATATTCAATTTTGGAAAGCAATCATAAATTATTTCTCTTTTTCATAACTTGAACTACTATATTTTTTCAACAAATGGTTTCGAGATAGGCCAGACTCAAGCTAGTAAAATGAAACTTTGTAGGGCATTGTTTTAGTGCTTGATTAAAGAGGTGTTTAAATTGACATGATTTTGTATCCAATCCATACTAATTGCTTTCATACTCTCACTCCCATTTGATTCTTAAACAGAAAGAAGGAGAAAACAATGAGCCGCTTTTCTGATTAATCCGCGAAGACCAAACTAATTATCACTCATCAAAAGTTTGTTAGTCCCATTTGTGCATTTCACGTAGTTTGCTTGCTCATACACATATGTTTGATTTCTATAGTGCATTTTGTGATTGTGAGGTCCGTGATTATTTGTGAATTTCATCTTTAATAGATTTCATGACTATCACCCGCGTTGGGTCTGATGAAGATATTTCCGTTGATAAGAAAAACTCAGTTCCATTTCCAACATCAGCCTCTGATAATGAATCTTCCTGTTTTGATTGCAACATTTGCCTTGACTCAGCACATGATCCTGTAGTCACCCTCTGCGGTCACCTCTACTGCTGGCCTTGC</genome_strand>
        <mrna_strand>TGGAAAAAAATGATATGGAGAATATGACTGGGAATACATGTCAATTATTTTATACAAACAAGTTCTCCAAATCCATGGATCCTAATGGATGTTTGAGTGTTTTAACCCAATTAATAATCCAGGTTTATATATTCAATTTTGGAAAGCAATCATAAATTATTTCTCTTTTTCATAACTTGAACTACTATATTTTTTCAACAAATGGTTTCGAGATAGGCCAGACTCAAGCTAGTAAAATGAAACTTTGTAGGGCATTGTTTTAGTGCTTGATTAAAGAGGTGTTTAAATTGACATGATTTTGTATCCAATCCATACTAATTGCTTTCATACTCTCACTCCCATTTGATTCTTAAACAGAAAGAAGGAGAAAACAATGAGCCGCTTTTCTGATTAATCCGCGAAGACCAAACTAATTATCACTCATCAAAAGTTTGTTAGTCCCATTTGTGCATTTCACGTAGTTTGCTTGCTCATACACATATGTTTGATTTCTATAGTGCATTTTGTGATTGTGAGGTCCGTGATTATTTGTGAATTTCATCTTTAATAGATTTCATGACTATCACCCGCGTTGGGTCTGATGAAGATATTTCCGTTGATAAGAAAAACTCAGTTCCATTTCCAACATCAGCCTCTGATAATGAATCTTCCTGTTTTGATTGCAACATTTGCCTTGACTCAGCACATGATCCTGTAGTCACCCTCTGCGGTCACCTCTACTGCTGGCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-uHa3Bz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343878" ref_strand="+" ref_description="SGN-U343878        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G27470.1 | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr4:13735005-13736524 FORWARD | Aliases: F27G19.70, F27G19_70 (evalue: 1e-19, score=94) genbank/nr: gi|22795037|gb|AAN05420.1| putative RING protein [Populus x canescens](evalue: 4e-27, score=124)">
      <seq>aaaagaggcacaaggttcaggaaatgaagcaacattagcatggtgtataaagctatatttctactaaatctcttactagtctatatttgtctactatgaactattacctgattgttgtaagcacaaccacatatttatacaaatatatgatgaagataaacattatatgaacctcaaaacaggagtaggcacaagatagagcagcagaaaagaaagatgaacaatctgttgagaaatttgtccatctgcatttcttcccttctcattctaagaccactgcgtcctcggatgagataagatctaggatgaggataagcgattccaaacagtcttgaagaaaacagttctccaaacacaccaaccactgggctgaacaaactggtcattgctgtgctcccaaagctagatggagccaaagctgcgtagttaccaaaggcttgggggagatattgccggtgatgttgaaatgtggagggtcgtggagggtagacagaagtttgacgaagtctctgatgtaagcgagagattggagagtctgaattatgcggtgtcatcgtcctaatagctcgaggcctatgaggtatgtctacatctgcctgatccttcttgggttcagactctaatgatgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-oFcr6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="26840" stop="25609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26540" g_stop="25909" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-U343878" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26540" e_stop="25909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGGCACAAGGATAAGGAAATGAAGCAACATTAGCATGGTGTATAAAGCTATATTTCTACTAAATCTCTTACTAGTCTATATTTGTCTACTATGAACTATTACCTGATTGTTGTAAGCACAACCACATATTTATACAAATATATGATGAAGATAAACATTATATGAACCTCAAAACAGGAGTAGGCACAAGATAGAGCAGCAGAAAAGAAAGATGAACAATCTGTTGAGAAATTTGTCCATCTGCATTTCTTCCCTTCTCATTCTAAGACCACTGCGTCCTCGGATGAGATAAGATCTAGGATGAGGATAAGCGATTCCAAACAGTCTTGAAGAAAACAGTTCTCCAAACACACCAACCACTGGGCTGAACAAACTGGTCATTGCTGTGCTCCCAAAGCTAGATGGAGCCAAAGCTGCGTAGTTACCAAAGGCTTGGGGGAGATATTGCCGGTGATGTTGAAATGTGGAGGGTCGTGGAGGGTAGACAGAAGTTTGACGAAGTCTCTGATGTAAGCGAGAGATTGGAGAGTCTGAATTATGCGGTGTCATCGTCCTAATAGCTCGAGGCCTATGAGGTATGTCTACATCTGCCTGATCCTTCTTGGGTTCAGACTCTAATGATGATAT</genome_strand>
        <mrna_strand>AAAAGAGGCACAAGGTTCAGGAAATGAAGCAACATTAGCATGGTGTATAAAGCTATATTTCTACTAAATCTCTTACTAGTCTATATTTGTCTACTATGAACTATTACCTGATTGTTGTAAGCACAACCACATATTTATACAAATATATGATGAAGATAAACATTATATGAACCTCAAAACAGGAGTAGGCACAAGATAGAGCAGCAGAAAAGAAAGATGAACAATCTGTTGAGAAATTTGTCCATCTGCATTTCTTCCCTTCTCATTCTAAGACCACTGCGTCCTCGGATGAGATAAGATCTAGGATGAGGATAAGCGATTCCAAACAGTCTTGAAGAAAACAGTTCTCCAAACACACCAACCACTGGGCTGAACAAACTGGTCATTGCTGTGCTCCCAAAGCTAGATGGAGCCAAAGCTGCGTAGTTACCAAAGGCTTGGGGGAGATATTGCCGGTGATGTTGAAATGTGGAGGGTCGTGGAGGGTAGACAGAAGTTTGACGAAGTCTCTGATGTAAGCGAGAGATTGGAGAGTCTGAATTATGCGGTGTCATCGTCCTAATAGCTCGAGGCCTATGAGGTATGTCTACATCTGCCTGATCCTTCTTGGGTTCAGACTCTAATGATGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-uHa3Bz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324688" ref_strand="+" ref_description="SGN-U324688        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:21865361-21867337 FORWARD | Aliases: MGN6.19, MGN6_19(evalue: 2e-28, score=123) genbank/nr: OSJNBa0074L08.19(evalue: 2e-29, score=132)">
      <seq>cagggcgaaagagcgagtaaaagcttcagaagacgaaaatggagcgactccatcgaagcggcaacacaaatcaaaatccaaaagagaagatgaatctgaatccgaaccggaacgagaagtgagaaaacaccgcagaaagagaagtcgaagttctagaagaagatcgcgggatgattatgacgattcggattcttcatcatctggagaagattcgtattcggactctgaagactcgtattcggattcagagtcgggtagtagttcggagtattcggattcggaagaggagaggaggcgtagaaagaggagagataggaagagaagagaggaaaaggagagagaagaaagagaggaagaagaaaaagaaagagaaggggaaaactggtgctgttacaaactcttggggaaaatatggaatcatcaaggaaactgatatgtggaacaaacggccagagtttaccgcatggttggcagaaataaagaaggtgaatctggaaagcctgccaaattgggaagagaagcaattgttcaagcaattcatggaggatcataacactgcaaccttcccttctaaaaatattataaccttgacgcctattacagacgtaaaatggaaaaggaaagtagaagaggtgtcaagaaggtcgtggacgatgaacgtactgtcttcgatgatgaagaacagcgcaggcaagaactgatgcgagagcgtgagaagcacaagcaagaacaggtggaaacattgaagcgcgagatgcagagtggaatggcgcaagcaatgaaagaacaagctcaattaagagaagagatggcttatcaatacaagcttggtaactttgaggctgcagctgctattcaaagacgtttggaccctgatctccctatgtagacgaggttctgcaaaattttggtctacgctacaacggattacattagactacatgttttagtttttctgtctccttttcgttgagtaaatatgcttgcagattcatctgcaagtctaagcttattactagatatcactaggctagatgagttgaaatctagttcatgtattgttgtgtaatatcatttgcactcccatctttttattctcttcgatctccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-oFcr6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="28259" stop="32338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28558" g_stop="28896" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28897" i_stop="28964" i_length="68">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28965" g_stop="29064" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="439" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29065" i_stop="30014" i_length="950">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30015" g_stop="30060" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="485" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30061" i_stop="30306" i_length="246">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30307" g_stop="30356" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="535" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30357" i_stop="30477" i_length="121">
            <donor d_prob="0.495" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30478" g_stop="30519" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="576" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30520" i_stop="30756" i_length="237">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30757" g_stop="30870" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="690" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30871" i_stop="31444" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31445" g_stop="31523" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="769" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31524" i_stop="31623" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31624" g_stop="31695" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="841" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31696" i_stop="31769" i_length="74">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="31770" g_stop="32038" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="1110" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1111" polyA_stop="1127"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-U324688" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1111</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28558" e_stop="28896"/>
          <exon e_start="28965" e_stop="29064"/>
          <exon e_start="30015" e_stop="30060"/>
          <exon e_start="30307" e_stop="30356"/>
          <exon e_start="30478" e_stop="30519"/>
          <exon e_start="30757" e_stop="30870"/>
          <exon e_start="31445" e_stop="31523"/>
          <exon e_start="31624" e_stop="31695"/>
          <exon e_start="31770" e_stop="32038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGAAAGAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAGAGAGAAGAAACGAAAGCTGAGGAAAGAGAAGGAGAAGGAGAAGAAGAAGAGGAGGAAGAAGGAGAAAGAGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTGGTGAGCAACTTTTCATGGCTTTAACTTTTTTAGTGTTTACTTCTTTGGATTATGAATTGAATTAATGCTTGAAATGTTGGTTTGGAGTAGTGATTTGAAGTGTATTAGTAAAGGAAATGACTTCTCTTTTGATAAAAATGTATTCTTTGGCTAATACTTGAAAGACATAACTACTTGATTGTAAGCAAACCACAACAACATACCCGGCATTATGCTTACCTTTTGTATTGGAGCTATCGATATCTTCTGGTTTGTATGTCTTGTTTCTTATGCATCTTCTTGATGCCTTTAAAAGATATAATCTTACTTCATGAAAAAAGGAGACAATGCTGTCTTTACACTCCCCACCCTACACATCTTTGGTTGTGTTAAGATTTATGTTGGCTCCGTTATCTGTCCTTGAGACTGGCTTTGTGAGCAAGCTCACACGGGTGAGTGATTATTCTACAAATTTTAGGCTTTACCCCTTAATGTAACTTGAATGCTCTGAACAATCATTCAATCTATCCTCTGTTCCATTATATAGGTTAGAACATATGATTTCCAGACAGAGCCTTACTTTTGGATCATTTTCTGGCATAATTGTTAAGAGGATGCAGCATTTTGAGTAGTGAGAGACATGCTATTGACTCCTATATTGTCCAGAAAGAAGTCAGTCATATTGCTGTATATGAAGATATACCTTTTTTTTTATATTGTGGTTGGACCATTCATCTGTGTAGATGTACCTTTTATTTATATAAAAGAGAGTGGAAATTTCTGAATTCGTGCATTATTACGGTGATAATATGTTTATGCTTGAACTAATTACGATGGATTCTCGTCACCTTCTTGTGTGTTGCAATTTTATTTCAGAAGGTTGCAGGAAATGTTTCTCTTCACTTTGGTGTCAGTTTTAATGATCAGATTGTTTTTATATAGATTTCAACTTTAGTTATTGCTTATTGTAGGAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAGGTACGTAGTGACTCTTTAAGCTTATGCATGTTGATCATCCACACAGGACTTGTTGCAGGATATGCCAATTGTTTTGATAAATATTTTTGGATAGGTCTTCATTTTCCATTTAGTGCACTATAGTGCATTTCCAAAGGTCCCCATTAAAAAGCTTCCATTGCATAGCACTACATTCTCTTTCTATTCAATTTTGTGTAAGATATTATATCTAGTTGTGGAAGTTCTCATTTCTTATGTCATTTATAGGTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCAGTAAGTAAATCGAGAAGGGATAAGCTTGTTCTTATTAGCACCTGTTCTTTCCCTTTCTCTACCTCTGTTTAAGCAATATATGCAAGGAACTTCCACTTTTTTATAGTCAACTATTGTGCAGATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAAGTAAGGCTACTGCACTATTTCAATCTAAACTTATTTTTCTGGTTGGGATGGGTTTTTTTTTCTATATTGGCAATAAATGTATTGAGTTGGGTGTTTTATGTGAGGCTTCTAGTTCCTTGCAGGATGATATGTGTTTGTACACACATATACACGTAGAGAGATAGGTATACAGATGCTTGATATTTGAGTTATGTTATAATCATCTAACAGTACGTCTGTTATTCTTCATTTTTGCAGATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAGGTAAGTCATGGACACGGTTGCCATTTCATTTGATAAATCGTTTTTTGGTTGAGTAGTATGAAGTCAGCTAAGGGCATGACACAAATTCAAATACTGTTAGAGAACCAAGTTTGGACTTTTGGTTTTTAAATCTAGAAGGATACACCTATTATCCACTGAATTTACGTTTCAAAGCTGGAACATCGGATTTCTTATTTCTTATTTAGAGGAAATAACTTTGAAGTTTCAAATTTCTAATGTGATCTCGTGCTCTTTGGAGCTATTTGAACAGAGCCACTATCCTGCAGTGGTGGTATAGATTATTGCTTTGCCCTAGTTTAATCTTTCAGACCTGAAACCACATTATAATACTCAAAGATGGTGGTATGTATAAAATTTTAGCATCCTGGAAGCTATAGGATCCCACATTAAGCAAGTACTATATAGTTAAACATACAAGAGTATTTTTTTTTTCCTGAAGACAAATCGGCTCCAACTTTTGTCATTGAAAGGGAAAAAAGGGGAGGAGATTTTCATCTTTCCATTAAATTGGCATAGTCTGGTTTTTGAGTCGTTACGTATTCTGTTATTGTAGGCAAGAACTGATGCGAGAGCGTGAGAAGCACAAGCAAGAACAGGTGGAAACATTGAAGCGCGAGATGCAGAGTGGAATGGTATGTATTCTGCTACCTTTGTCCTTTCTCCATACAACAGGTGAAAAGTATATAATGTGACGAACTCCTCTCTTTTTGTTTGTAAATTTGAATCTCTAAGGCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAGGTGAGAATGAGCCTTATCATGATACACTATTTTCTTTTTCCGCTCATTGATCTTATTTTCCGATGTCCTGATAGGCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTTCTGCAAAATTTTGGTCTACGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTTCTGTCTCCTTTTCGTTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTAAGCTTATTACTAGATATCACTAGGCTAGATGAGTTGAAATCTAGTTCATGTATTGTTGTGTAATATCATTTGCACTCCCATCTTTTTATTCTCTTCGATCTCCA</genome_strand>
        <mrna_strand>CAGGGCGAAAGAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAG....................................................................AGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAG......................................................................................................................................................................................................................................................GTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCA.........................................................................................................................ATTCATGGAGGATCATAACACTGCAACCTTCCCTTCT-AAAA.............................................................................................................................................................................................................................................ATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAACTGATGCGAGAGCGTGAGAAGCACAAGCAAGAACAGGTGGAAACATTGAAGCGCGAGATGCAGAGTGGAATG....................................................................................................GCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAG..........................................................................GCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTTCTGCAAAATTTTGGTCTACGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTTCTGTCTCCTTTTCGTTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTAAGCTTATTACTAGATATCACTAGGCTAGATGAGTTGAAATCTAGTTCATGTATTGTTGTGTAATATCATTTGCACTCCCATCTTTTTATTCTCTTCGATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-uHa3Bz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332849" ref_strand="+" ref_description="SGN-U332849        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | disease resistance family protein, contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-0B (Lycopersicon esculentum) gi:3894387:gb:AAC78593 | chr3:9116875-9119547 REVERSE | Aliases: K3G3.7(evalue: 4e-32, score=135) genbank/nr: gi|54397639|gb|AAV33691.1| Hcr9-OR2C [Lycopersicon pimpinellifolium] (evalue: 7e-36, score=153)">
      <seq>tcattgtacagatcgtatgaggattctgtgagtttggtgatcaaagnccaggacattgagctagaaagaatcagcacaattatgacaaccatagacctctcgagcaaccattttgaaggtgtcattccaaaaacactaaaggatctcagctcactttggctactcaatttatcccataacaatctcatcggtcatattccaatggaattggggcaattgaataagcttgaagcgttatatctctcctggaatcggctcacaggaaagattccaagggaattgataacaatgaagtttctagcagtcttaaacctctctcagaatcttcttattggatcgattcctcaaggtctacaattcaacacatttgaaaatgactcgtatggcggtaaccttgatctatgtggtcctcctttgtcaaagcaatgtggaacgagtgattcatcccatgttcctcaaccattggagtctgaagacgagtcatatttttttagtggatttacgtgggaatcagtagtcataggctacagctttggactagttgttggaactgttgtgtggagcctcgtgtttaaataccgtaagccagaatggtttgtcgaattttttgaaggcatttatcccaagaaaatgagaaggtcaatgaagagagctcggagacgacggacttaatggaagaatgtaagagtgaacttttctgtttttttagttatatttttgttgtttgtatatatgcttgataacaattaattgcatgtgttatattgtgaatttccactgaattaaaataagtgttcttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-oFcr6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41792" stop="40392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41492" g_stop="40702" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="801" polyA_stop="812"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-U332849" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41492" e_stop="40702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGTACACATCCTACAAGGATTCTGTGAGTTTGGTGATCAAAGGCCAGGACATTGAGCTAGAAAGAATCAGCACAATTATGACAACCATAGACCTCTCGAGCAACCATTTTGAAGGTGTCATTCCAAAAACACTAAAGGATCTCAGCTCACTTTGGCTACTCAATTTATCCCATAACAATCTCATAGGTCACATTCCAATGGAATTGAGGCAATTGAATAAGCTTGAAGCGTTAGATCTCTCCTGGAATCGTCTCACCGGAAAGATTCCAAAGAAATTGATAACAATGAAGTTTCTAGCAGTCTTAAACCTCTCTCAGAATCTTCTTATTGGATCGATT-CTCAAGGTCTACAATTCAACACATTTGAAAATGACTCGTATGGTGGAAACCTTGATCTATGTGGTCCTCCTTTATCAAAGCAATGTGGAACGACTGATCCATCCCATGTTCCTCAACCATTGGAATATGAAGGCGAGTCATATTTTTTTAGTGGATTTACGTGGGAATCAGTAGTCATAGGCTACAGCTTTGGACTAGTTGTTGGAACTGTTGTGTGGATCCTCGTGTTTAAATACCGTAAGCCAAAATGGTTTGTTGAATTTTTTGAAGGCATTTATCCCAAGAAAATGAGAAGGTCAATGAAGAGAGCTCAGAGACGACGCACTTAATGGAAGAATGCAAGAGTGAACTTTTCTGTTTTTTTAGTTATCTTTTTGTTGTTTGTATATATGCTTGATAACAATATAATTGCATGTGTTATTTTGTGAATTTCCACTGGATTAAAATAA</genome_strand>
        <mrna_strand>TCATTGTACAGATCGTATGAGGATTCTGTGAGTTTGGTGATCAAAGNCCAGGACATTGAGCTAGAAAGAATCAGCACAATTATGACAACCATAGACCTCTCGAGCAACCATTTTGAAGGTGTCATTCCAAAAACACTAAAGGATCTCAGCTCACTTTGGCTACTCAATTTATCCCATAACAATCTCATCGGTCATATTCCAATGGAATTGGGGCAATTGAATAAGCTTGAAGCGTTATATCTCTCCTGGAATCGGCTCACAGGAAAGATTCCAAGGGAATTGATAACAATGAAGTTTCTAGCAGTCTTAAACCTCTCTCAGAATCTTCTTATTGGATCGATTCCTCAAGGTCTACAATTCAACACATTTGAAAATGACTCGTATGGCGGTAACCTTGATCTATGTGGTCCTCCTTTGTCAAAGCAATGTGGAACGAGTGATTCATCCCATGTTCCTCAACCATTGGAGTCTGAAGACGAGTCATATTTTTTTAGTGGATTTACGTGGGAATCAGTAGTCATAGGCTACAGCTTTGGACTAGTTGTTGGAACTGTTGTGTGGAGCCTCGTGTTTAAATACCGTAAGCCAGAATGGTTTGTCGAATTTTTTGAAGGCATTTATCCCAAGAAAATGAGAAGGTCAATGAAGAGAGCTCGGAGACGACGGACTTAATGGAAGAATGTAAGAGTGAACTTTTCTGTTTTTTTAGTTATATTTTTGTTGTTTGTATATATGCTTGATAACAAT-TAATTGCATGTGTTATATTGTGAATTTCCACTGAATTAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-uHa3Bz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U338087" ref_strand="+" ref_description="SGN-U338087        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atttttcagagagagtttttcagcagctaaaagagagaaaaaagagagaaattcgcagtcaaaaatccagccataacaaccaacttcaaattgcgattcccgcttcgtttcttgtccgattgagctgatttttggacagcatattatcttcatctcaatctttgattaggaactgacagagttggatttggtggtctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgattttgctcctttaattctctagatttggagcaatcttattttgttgttgctcgttgtttgacactttgttttgtggccaattttggagaacaatattgtaactcttggtgattatagtggagcttttggacccgtggttttttactcttcacatcgaaggggtttccacgtaaatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-oFcr6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47047" stop="48018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47306" g_stop="47718" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="425" r_length="413" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-U338087" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47306" e_stop="47718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTTTTCAGCAGCCAAAAAGAGAGAAAAAGAGCAGTTTTTCGCAGTC-AAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGTATATTATATTCATCTCAATCTTTGATTAGAAACTGACAGAGTTGGATTTGGTGGCCTGAAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCAC-TTGTTTTATGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTTATTATAGTGGAGCTTTTGGTCCTGTGATTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTG</genome_strand>
        <mrna_strand>GAG-TTTTTCAGCAG-CTAAAAGAGAGAAAAAAGAGAGAAATTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGTCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGAGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGACCCGTGGTTTTTTACTCTTCACATCGAAGGGGTTTCCACGTAAATCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-uHa3Bz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313280" ref_strand="+" ref_description="SGN-U313280        Tomato 200607 #1 [53 ESTs aligned] arabidopsis/peptide: AT4G27440.2 | Symbol: None | similar to protochlorophyllide reductase A, chloroplast / PCR A / NADPH-protochlorophyllide oxidoreductase A (PORA) [Arabidopsis thaliana] (TAIR:At5g54190.1); similar to NADPH-protochlorophyllide oxidoreductase [Cucumis sativus] (GB:BAA21089.1); similar to protochlorophyllide reductase (EC 1.3.1.33) precursor - garden pea (GB:S20941); similar to protochlorophyllide reductase [Pisum sativum] (GB:CAA44786.1); similar to NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum] (GB:BAB93003.1); similar to NADPH:protochlorophyllide oxidoreductase [Daucus carota] (GB:AAF20949.1); contains InterPro domain Glucose/ribitol dehydrogenase (InterPro:IPR002347); contains InterPro domain Light-dependent protochlorophyllide reductase (InterPro:IPR005979); contains InterPro domain Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198) | chr4:13725552-13727358 FORWARD | Aliases: None (evalue: 2e-174, score=609) genbank/nr: gi|21068893|dbj|BAB93003.1| NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum](evalue: 0, score=674)">
      <seq>caaattcttactacacacactatcagtccaaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcatttccttctttcgagattgttgattgatgatttgaagcagtctgattacccttcaaagagactcatcattgttggttcgattacaggaaacacaaacacattggctggaaatgtacctccaaaggccaacctcggggacttgaggggtttagcaagggggctcgatggacttaacagctcagccatgattgacggtggtgactttgatggtgccaaagcttacaaagacagcaaggtttgcaatatgctcactatgcaggaattccatagacgataccacgaagagactggcatcacatttgcctccctataccctggctgcatcgcgacaacagggctattcagggagcatatccccttgtttaggctccttttccctccattccagaagtttatcaccaaaggattcgtctccgaggcagaatctggaaagagacttgcacaggttgttagtgatccaagtcttacaaaatcaggtgtgtactggagctggaacaagaactcttcctcctttgagaaccagttgtcagaagaagctagtgacgttgagaaagcgcgtaaagtgtgggaagtcagtgagaaactcgtgggattggcttagattttttgctgattgagttcaaccatcaccaagacgaacacgaaaaaggagttgatgaaggagaatttgaatcgagtctgttttgttgtagttaaaaagttgtcacttcgtaaaatttttgagttaggaataaatatcattcatccttttagaatcgagcgcttaccaacacgccaacaattatagcgctcacaactttaagtccacccaacaagcgtcatgttcgatcaatgactcactcaacaatttccagtatgaatgatcatgtgaattatgattccgtattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-oFcr6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59351" stop="62811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59651" g_stop="59801" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="247" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61268" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="776" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61269" i_stop="61368" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61369" g_stop="61727" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="1135" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61728" i_stop="62067" i_length="340">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62068" g_stop="62512" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1136" r_stop="1580" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-U313280" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59651" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61268"/>
          <exon e_start="61369" e_stop="61727"/>
          <exon e_start="62068" e_stop="62512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTTACTACACACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAGGTAACAGTCAGACCTCTTTATAACAACATCGTTTGTCTAGATAGTTTTGATACTCATTTTAGTGGGAGACTAATCGTTGTTACTGAAAATCAAATATCAGGAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAGGTAATATTTATTAGTGTCAGTTTCACGTATAACCACTGAACTTTATCCACTATAACAGTAACCGTAAAGATAAGATACCTGGCCTAACTCAATCTCAAAAGTTAGCTCGTGAGGAGAGGATTGCTCGAGTCTATATTAGGAGAGCACCAATCCATTCATCAACCAATGTGAGACTTTTATTCACTCTAACACTCCCCTTCACGCCCATGCCCAACTGAAGCGTAGACTGGGAGCCCAAAGAGGGATACCATGTAAAGATGATTTTAGGCCTAACCAAGAAACTAATTTTTGTCACACTAAAGTTACTAAACATAAGATGTTGTTTGTTTGTTATTTACAGGTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAGAATCGAGCGCTTACCAACACGCCAACAATTATAGCGCTCACAACTTTAAGTCCACCCAACAAGCGTCATGTTCGATCAATGACTCACTCAACAATTTCCAGTATGAATGATCATGTGAATTATGATTCCGTATTCAC</genome_strand>
        <mrna_strand>CAAATTCTTACTACACACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAG....................................................................................................GAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAG....................................................................................................................................................................................................................................................................................................................................................GTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAGAATCGAGCGCTTACCAACACGCCAACAATTATAGCGCTCACAACTTTAAGTCCACCCAACAAGCGTCATGTTCGATCAATGACTCACTCAACAATTTCCAGTATGAATGATCATGTGAATTATGATTCCGTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-uHa3Bz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313769" ref_strand="+" ref_description="SGN-U313769        Tomato 200607 #1 [65 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to auxin down-regulated protein ARG10 (Vigna radiata) GI:2970051, wali7 (aluminum-induced protein) (Triticum aestivum) GI:451193 | chr4:13727493-13728892 REVERSE | Aliases: F27G19.50, F27G19_50(evalue: 7e-108, score=387) genbank/nr: gi|18416995|ref|NP_567775.1| expressed protein [Arabidopsis thaliana] gi|14030723|gb|AAK53036.1| AT4g27450/F27G19_50 [Arabidopsis thaliana] gi|15028057|gb|AAK76559.1| unknown protein [Arabidopsis thaliana] gi|20259059|gb|AAM14245.1| unknown protein [Arabidopsis thaliana] gi|21593019|gb|AAM64968.1| unknown [Arabidopsis thaliana](evalue: 5e-106, score=387)">
      <seq>atttcatcttgaagctaaaaaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaagctaactggtctgactggaacacttcttactaagtcgattctctgcaattttcaaacttcctttagtgtttgttctgttttggttagattttcgagtttgttttaggtttggtttctttcctgtacgtgctttgcacctgtgtataacgcttgaaaaataaatgaaacattagaaatgattcagcttattcgatgaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-oFcr6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65313" stop="62425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65013" g_stop="64766" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="492" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="613" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="62728" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="971" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="972" polyA_stop="990"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-U313769" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>971</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65013" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTTATTCGATGAC</genome_strand>
        <mrna_strand>ATTTCATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTTATTCGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-uHa3Bz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334587" ref_strand="-" ref_description="SGN-U334587        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to auxin down-regulated protein ARG10 (Vigna radiata) GI:2970051, wali7 (aluminum-induced protein) (Triticum aestivum) GI:451193 | chr4:13727493-13728892 REVERSE | Aliases: F27G19.50, F27G19_50(evalue: 5e-72, score=268) genbank/nr: gi|18416995|ref|NP_567775.1| expressed protein [Arabidopsis thaliana] gi|14030723|gb|AAK53036.1| AT4g27450/F27G19_50 [Arabidopsis thaliana] gi|15028057|gb|AAK76559.1| unknown protein [Arabidopsis thaliana] gi|20259059|gb|AAM14245.1| unknown protein [Arabidopsis thaliana] gi|21593019|gb|AAM64968.1| unknown [Arabidopsis thaliana](evalue: 4e-70, score=268)">
      <seq>atccagctgatcaagttattaaggattttgaaggaagtttagcttttgttatctatgatagtaaagctccacctgtatttgtagctttgggttcagatggtcgggtaaagttattttggggtatcgccgctgatgcatctgtggtaatttctcatgatgtagaggttattaaagctgtatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaccaagatgagggctatgccaagagtacatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctatagttggcagtgaagctaactggtctgactggtcacacttcttactaagtcgattctctgcaattttcaaacttcctccagtgtgtgctctgctatggttagattttcgagtctgcattaggatcggcttctttcctgtacgtgctttgcacctgtgcataacgcttgaagaataaatgaaccattaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-oFcr6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64165" stop="62451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63865" g_stop="63777" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="210" r_length="121" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63085" g_stop="62751" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="546" r_length="336" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-U334587" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334587" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63865" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGG-AACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGA</genome_strand>
        <mrna_strand>ATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTAGCTTTTGTTATCTATGATAGTAAAGCTCCACCTGTATTTGTAGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTCGGGTAAAGTTATTTTGGGGTATCGCCGCTGATGCATCTGTGGTAATTTCTCATGATGTAGAGGTTATTAAAGCTGTATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGACCAAGATGAGGGCTATGCCAAGAGTACATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTATAGTTGGCAGTGAAGCTAACTGGTCTGACTGGTCACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTCCAGTGTGTGCTCTGCTATGGTTAGATTTTCGAGTCTGCATTAGGATCGGCTTCTTTCCTGTACGTGCTTTGCACCTGTGCATAACGCTTGAAGAATAAATGAACCATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-uHa3Bz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316864" ref_strand="+" ref_description="SGN-U316864        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | (1-4)-beta-mannan endohydrolase, putative, similar to (1-4)-beta-mannan endohydrolase (Coffea arabica) GI:10178872; contains Pfam profile PF00150: Cellulase (glycosyl hydrolase family 5) | chr5:26555621-26558262 REVERSE | Aliases: K1F13.12, K1F13_12(evalue: 8e-32, score=133) genbank/nr: gi|10180974|gb|AAG14352.1| endo-beta-mannanase [Lycopersicon esculentum](evalue: 2e-78, score=293)">
      <seq>ttcattagtaaccatcttatcaatgaaattgattttgctacaatccatgcatacactgatcaatggttatctggacaaagtgatgaagcacaattggcgtggatggaaaagtggataagaagtcattgggaagatgcaagaaatatattgaagaaacctttagtgcttgctgaatttggaaagtctagtagatcaggtgaaggatcaagagatatatttatgagtagtgtgtatagaaatgtgtataatttggcaaaagaaggtggaacaatgggaggaagtttagtatggcaactaatggcacatggaatggagaattatgatgatggttattctattgttttgggactaaatccttcaactacacaaattatctcaaaccaagctcatatcatgactgctttggctcattctctcaatcatgagtgaagacatcataataatcaatttataatctatcatttttagtattattaatttgagatgatattaccaaacatgttcaagttgattaaacacaagaatgtaattgaataaattgttttagtaaaaaggaaagttatgttataaaaaaaaaaaaaaaaaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-oFcr6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="67902" stop="69151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68202" g_stop="68266" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68267" i_stop="68347" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68348" g_stop="68850" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="568" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="590"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-U316864" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68202" e_stop="68266"/>
          <exon e_start="68348" e_stop="68850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATGGTATGTAGAATTTACATGATCTTTCGAATCTGTACGTACATTTTCATAAGTTTAAATATTTATTTATATCGATGGTTATAGGTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTACAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTCTATTGTTTTGGGACTAAATCCTTCAACTACACAAATTATCTCAAACCAAGCTCATATCATGACTGCTTTGGCTCATTCTCTCAATCATGAGTGAAGACATCATAATAATCAATTTATAATCTATCATTTTTAGTATTATTAATTTGAGATGATATTACCAAACATGTTCAAGTTGATTAAACACAAGAATGTAATTGAATAAATTGTTTTAGTAAAAAGGAAAGTTATGTTAT</genome_strand>
        <mrna_strand>TTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATG.................................................................................GTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTCTATTGTTTTGGGACTAAATCCTTCAACTACACAAATTATCTCAAACCAAGCTCATATCATGACTGCTTTGGCTCATTCTCTCAATCATGAGTGAAGACATCATAATAATCAATTTATAATCTATCATTTTTAGTATTATTAATTTGAGATGATATTACCAAACATGTTCAAGTTGATTAAACACAAGAATGTAATTGAATAAATTGTTTTAGTAAAAAGGAAAGTTATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-uHa3Bz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316863" ref_strand="+" ref_description="SGN-U316863        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | (1-4)-beta-mannan endohydrolase, putative, similar to (1-4)-beta-mannan endohydrolase (Coffea arabica) GI:10178872; contains Pfam profile PF00150: Cellulase (glycosyl hydrolase family 5) | chr5:26555621-26558262 REVERSE | Aliases: K1F13.12, K1F13_12(evalue: 2e-27, score=80.1) genbank/nr: gi|10180974|gb|AAG14352.1| endo-beta-mannanase [Lycopersicon esculentum](evalue: 2e-61, score=157)">
      <seq>agagagagaagagggagaaacccttcccccctctccaagccgcctccttcttctcccctctccatctcctcttctctcttcctcccaaaccgttcctcctctacctcttttccgtcagcccctctcaccctttccctccctctttcccgtttctcccccttcctcttcctctcctctcttctatctcctccattctctctttttccggcaaagcagcgacaacaacccagcagcagctgagacagcctacaacaacagctccaacagccggcgagccaagcagcgccgccctctccctcttctccggcaaagcagcgacagcaaccggcaaaagctccggctgaagcagcaacaacaaacgacggaaatagcagcgccaccactcgcatacttatccggtgaagacaccatcagcgtcagcagctccaggaggcgagcaccacagatgatatcaactccgaccttgttagagaaaacattcagatctgtccaaaagggttggttgggttcaagaaatggcgagttttgtgaagtcattagataacaaattggaagttgaaattgaaggattttatggtgattcaattcctgaaaggaaatcagtgaatcctggttatcaagttggaacaaatttctttagtaaccagcttatcaatgaaattgatttttgctacaatccgttcatacattgaccaatggttatctggacaaagtgatgaagcacaattggcgtggatggaaaagtggataacaagtcattgggaagatgcaagaaatatattgaagaaacctttagtgcttgctgaatttggaaagtctagtagatcaggtgaaggatcaagagatatatttatgagtagtgtgtatagaaatgtgtataatttggcaaaaaaaggtggaacaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-oFcr6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76030" stop="79007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76330" g_stop="76825" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76826" i_stop="77487" i_length="662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77488" g_stop="77492" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="500" r_length="4" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77493" i_stop="78219" i_length="727">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78220" g_stop="78417" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="698" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78418" i_stop="78498" i_length="81">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78499" g_stop="78707" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="907" r_length="209" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-U316863" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76330" e_stop="76825"/>
          <exon e_start="77488" e_stop="77492"/>
          <exon e_start="78220" e_stop="78417"/>
          <exon e_start="78499" e_stop="78707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAAGAGGGAGAAACCCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCCTTCCTCCTCTCCCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAGGTAATAATTTTGACAACCCTTTTTTTTTAGTCATTGTTTTGTTCATGCTTATACTAATTGTTGTATTATCTTTTGTATTGTTGAGTTGTCACACATAATTTTATTATTATTATCATTATTTGTGTATATTGTGATTTTGTCTCTTTTTTATATTGTTATTTTCCCTAATATTTATTTGATGAGTTATTTAGTCATAGTTAGAGTAATTGTATTCTACTTTAATTATATTTTGACATTTAGTTATTGTTGCTGCTAATATTAGTTTTGTGTGTTATCCGTTTTATGTTATATTAATGATGCCATGTTTACTTTTTTTTGTTTTATTTTTGTGTTAAGTTTTGTCAATTAGGTTGTTAATCTTTGCAAATGTTCAAAAAGCAAAAAATTTAAAAAAGAAAAATCAGCAATGCTATTTTGATTTTGGATGATACATAATGTTATATATATATATATTTATATATATATATATATATATTGCTATCGTTTAGACTTTGCAGCAATTATTTTTTTTTATATATCTTCATTACTTATTGGTTGTTATCTTGTTTTCAATGGGGTTTACATTACTTTAATATGGGGTAATTTTTATTATCTTTTATGCTTCTTTTATTTACTAAATTTTTGTTTGATGCTATACTAGTTTATATTATAAATTGTTAAAGGGCCTATGAAAAATCTATCCGTCGGGTTTAGAGGCCTCCCCATTTTAAAAGACGGAACTTTAATTCAAGTTTATATATTCTAAAAATTGTTGGAATTGGCCGATGAAGAAATTATCGTCGATTTCCAAGGCCTCCCATGTTGATAAGACGGATTTTTATTTTTAATTATTATTTGCTTTATTCAATTTTAATCATATTTATTCTTTACTAACATTTTTACCAAGTGTGTTTACAGGTACCCGGAGGTGCTTTTCCTTTTATTTCATTATTGTAAATATTGACGTTAGGCAAACCTTATGCCGATAATTATTATTTTATTTTATTGTGCATATTAAATGTTTATTATACTTGTACATTATTTTATATTTTTCCTCGATTTGAAAAAAAATGAATTCAGTCGGGAACCACATTTGTGGATTCCGAAGGGTGCCTAAACCCTTCCCTTCGGAATAACTTGAACCCCTTACCTAGAATCAATTTGGTTTCGTAGATAAATATTTGGTTTCCTAGTTTTCCTAAAATTAGGTGGCGACTTTTTTTTTTTTTAAAACTCATTTATTTTTAAAATTTTGTTACAATTAAATCAATTAATTATTTTTCGAGTTGCCGCGACGTTTCGCCCTATTTCGAAAGAGTAGGGATGTAAACAACTGTTAATATAAGTTCCACATTTAAGTTTAATTTTAGCAATATTAAATCTGTGATTGATGTTTTTAATGAATATTGTTATAGGGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTCGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATGGTACGTAGTTTTTACATGATCTTTCGAATGTGTACGTACATTTTTATAAGTTTAAATATTTATTTATATCGATAGTTACAGGGTATCTGAACAAAGTGATGAAGCACAATTGGTGTGGATGGAGAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGG</genome_strand>
        <mrna_strand>AGAGAGAGAAGAGGGAGAAACCCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCGTTCCTCCTCTACCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-TT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTGGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATG.................................................................................GTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAAAAGGTGGAACAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>13</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="14853" PGL_stop="15641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14853" e_stop="15208"/>
            <exon e_start="15288" e_stop="15351"/>
            <exon e_start="15558" e_stop="15641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.805" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14853" e_stop="15208" e_length="356"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15209" i_stop="15287" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15288" e_stop="15351" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.805" acc_prob="0.988">
            <gDNA_intron_boundary i_start="15352" i_stop="15557" i_length="206"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15558" e_stop="15641" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14853" stop="15208"/>
              <exon start="15288" stop="15351"/>
              <exon start="15558" stop="15641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344333" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGGTTTATGCTTGCAACAGGTGATATGATCTCTCTTCCACTAGAACAGGTTCATCCAGGGTATATTATCCCACCAGATACTATGAACTATTTTCTTCCAGAACTGCTTTCTACGGGGCCTGTTCTTGCACCAGGTGCTATGCACTATTTCCATCAGGAAATGGATCATGAACTCTGGACTCATGGTCCGCATAACAGTGCAAGTCTATCACTCCAATGCGAATCAGCTCCTAGTAAGGAACAACATGGAAATTTAGGTGAAAGCCTGAAGAATTTCCGTCTTTTCAAGAAATTTGATACTGTTCAAGATCATTCAGGCCATTACTTTTCTGGACTTGCATCTCATGACAACCTG : GCCTCTAAGAGTTGTGCCAAGAGGATACTGGAGGAGTGGAAGATACTGGAGAAAGATTTACCTG : ATACCATATTTGTCCGAGTGTATGAAACAAGGATGGATCTGTTGAGAGCAGTGATTATTGGAGCTGATGGAACTCCTTACCATG</gDNA_template>
            <first_frame> Q  G  L  C  L  Q  Q  V  I  *  S  L  F  H  *  N  R  F  I  Q  G  I  L  S  H  Q  I  L  *  T  I  F  F  Q  N  C  F  L  R  G  L  F  L  H  Q  V  L  C  T  I  S  I  R  K  W  I  M  N  S  G  L  M  V  R  I  T  V  Q  V  Y  H  S  N  A  N  Q  L  L  V  R  N  N  M  E  I  *  V  K  A  *  R  I  S  V  F  S  R  N  L  I  L  F  K  I  I  Q  A  I  T  F  L  D  L  H  L  M  T  T  W :   P  L  R  V  V  P  R  G  Y  W  R  S  G  R  Y  W  R  K  I  Y  L  :  I  P  Y  L  S  E  C  M  K  Q  G  W  I  C  *  E  Q  *  L  L  E  L  M  E  L  L  T  M </first_frame>
            <second_frame>  R  V  Y  A  C  N  R  *  Y  D  L  S  S  T  R  T  G  S  S  R  V  Y  Y  P  T  R  Y  Y  E  L  F  S  S  R  T  A  F  Y  G  A  C  S  C  T  R  C  Y  A  L  F  P  S  G  N  G  S  *  T  L  D  S  W  S  A  *  Q  C  K  S  I  T  P  M  R  I  S  S  *  *  G  T  T  W  K  F  R  *  K  P  E  E  F  P  S  F  Q  E  I  *  Y  C  S  R  S  F  R  P  L  L  F  W  T  C  I  S  *  Q  P   : G  L  *  E  L  C  Q  E  D  T  G  G  V  E  D  T  G  E  R  F  T  * :   Y  H  I  C  P  S  V  *  N  K  D  G  S  V  E  S  S  D  Y  W  S  *  W  N  S  L  P   </second_frame>
            <third_frame>   G  F  M  L  A  T  G  D  M  I  S  L  P  L  E  Q  V  H  P  G  Y  I  I  P  P  D  T  M  N  Y  F  L  P  E  L  L  S  T  G  P  V  L  A  P  G  A  M  H  Y  F  H  Q  E  M  D  H  E  L  W  T  H  G  P  H  N  S  A  S  L  S  L  Q  C  E  S  A  P  S  K  E  Q  H  G  N  L  G  E  S  L  K  N  F  R  L  F  K  K  F  D  T  V  Q  D  H  S  G  H  Y  F  S  G  L  A  S  H  D  N  L  :  A  S  K  S  C  A  K  R  I  L  E  E  W  K  I  L  E  K  D  L  P   : D  T  I  F  V  R  V  Y  E  T  R  M  D  L  L  R  A  V  I  I  G  A  D  G  T  P  Y  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14855" stop="15208"/>
                    <exon start="15288" stop="15351"/>
                    <exon start="15558" stop="15640"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFMLATGDMISLPLEQVHPGYIIPPDTMNYFLPELLSTGPVLAPGAMHYFHQEMDHELWTHGPHNSASLSLQCESAPSKEQHGNLGESLKNFRLFKKFDTVQDHSGHYFSGLASHDNLASKSCAKRILEEWKILEKDLPDTIFVRVYETRMDLLRAVIIGADGTPYH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15988" PGL_stop="16884"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15988" e_stop="16153"/>
            <exon e_start="16521" e_stop="16884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15988" e_stop="16153" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.979">
            <gDNA_intron_boundary i_start="16154" i_stop="16520" i_length="367"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16521" e_stop="16884" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15988" stop="16153"/>
              <exon start="16521" stop="16884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344775" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCATACAAGGGCTAATATTGAACGCTAAGCCCTATTTCAATGAGCCTGGATATGCCAGGATGAATGGCTCAGCCTCAGGGGAACGAAACTCACTGCGCTATAACGAGAACACTTGCATTTTTAATCTCAAGACAATGGTCTATTGTATGAGGCGACCACCACAG : CACTTTGAGGATTTTGTCATAGGGCATTACTTTCAAAGCTGTCAAGATATTCTTGTGGCATGTAAAGCATATATGGAAGGTGCTCGTGTGGGTAGCCTTGTCAGAGGGTGTGTTCTCGGCGATGGTGGCAAGGGTGGTGACAAAGGTGGTTCTCGGAGTTTCAAGGCCATGTTGGCGGGATTCATCGGGGTACTTGTAGAGGCGTTCAAAAAGATTGGTTGCGAGGATTGTGATAAGTTTCTTCCCTTGGCAGAAAAAGCGTCAACCAGAGCAACTCCAGTTAAGATAGACTGATAGAGACTGCTGACCATATGTAGATTTCAGTACTGTTATACACCTAATGTTGACAAACTAGTTTTCAGAC</gDNA_template>
            <first_frame> F  H  T  R  A  N  I  E  R  *  A  L  F  Q  *  A  W  I  C  Q  D  E  W  L  S  L  R  G  T  K  L  T  A  L  *  R  E  H  L  H  F  *  S  Q  D  N  G  L  L  Y  E  A  T  T  T   : A  L  *  G  F  C  H  R  A  L  L  S  K  L  S  R  Y  S  C  G  M  *  S  I  Y  G  R  C  S  C  G  *  P  C  Q  R  V  C  S  R  R  W  W  Q  G  W  *  Q  R  W  F  S  E  F  Q  G  H  V  G  G  I  H  R  G  T  C  R  G  V  Q  K  D  W  L  R  G  L  *  *  V  S  S  L  G  R  K  S  V  N  Q  S  N  S  S  *  D  R  L  I  E  T  A  D  H  M  *  I  S  V  L  L  Y  T  *  C  *  Q  T  S  F  Q   </first_frame>
            <second_frame>  S  I  Q  G  L  I  L  N  A  K  P  Y  F  N  E  P  G  Y  A  R  M  N  G  S  A  S  G  E  R  N  S  L  R  Y  N  E  N  T  C  I  F  N  L  K  T  M  V  Y  C  M  R  R  P  P  Q  :  H  F  E  D  F  V  I  G  H  Y  F  Q  S  C  Q  D  I  L  V  A  C  K  A  Y  M  E  G  A  R  V  G  S  L  V  R  G  C  V  L  G  D  G  G  K  G  G  D  K  G  G  S  R  S  F  K  A  M  L  A  G  F  I  G  V  L  V  E  A  F  K  K  I  G  C  E  D  C  D  K  F  L  P  L  A  E  K  A  S  T  R  A  T  P  V  K  I  D  *  *  R  L  L  T  I  C  R  F  Q  Y  C  Y  T  P  N  V  D  K  L  V  F  R  </second_frame>
            <third_frame>   P  Y  K  G  *  Y  *  T  L  S  P  I  S  M  S  L  D  M  P  G  *  M  A  Q  P  Q  G  N  E  T  H  C  A  I  T  R  T  L  A  F  L  I  S  R  Q  W  S  I  V  *  G  D  H  H  S :   T  L  R  I  L  S  *  G  I  T  F  K  A  V  K  I  F  L  W  H  V  K  H  I  W  K  V  L  V  W  V  A  L  S  E  G  V  F  S  A  M  V  A  R  V  V  T  K  V  V  L  G  V  S  R  P  C  W  R  D  S  S  G  Y  L  *  R  R  S  K  R  L  V  A  R  I  V  I  S  F  F  P  W  Q  K  K  R  Q  P  E  Q  L  Q  L  R  *  T  D  R  D  C  *  P  Y  V  D  F  S  T  V  I  H  L  M  L  T  N  *  F  S  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15989" stop="16153"/>
                    <exon start="16521" stop="16814"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIQGLILNAKPYFNEPGYARMNGSASGERNSLRYNENTCIFNLKTMVYCMRRPPQHFEDFVIGHYFQSCQDILVACKAYMEGARVGSLVRGCVLGDGGKGGDKGGSRSFKAMLAGFIGVLVEAFKKIGCEDCDKFLPLAEKASTRATPVKID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="20278" PGL_stop="22730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20278" e_stop="20550"/>
            <exon e_start="22237" e_stop="22730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20278" e_stop="20550" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22237" e_stop="22730" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20278" stop="20550"/>
              <exon start="22237" stop="22730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318067" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCCCAATCAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG : TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATGTTTGCTTCAATGTTTCTGAAGTTCAAATTTCACTGGTAAAATTGTCTCT</gDNA_template>
            <first_frame> K  P  N  Q  I  L  L  S  H  T  N  L  S  T  L  L  W  L  V  C  W  K  L  S  Q  F  L  G  P  P  P  P  L  L  R  R  R  C  L  L  F  P  V  A  G  L  L  L  N  S  L  Y  S  M  V  L  R  S  S  R  L  V  H  Q  Y  P  L  A  H  L  Q  N  L  F  P  V  E  E  E  E  S  S  V  R  L  R  I  L  L  F  *  :  C  L  V  L  M  I  N  H  G  R  L  L  *  S  G  L  S  Y  L  F  W  L  N  F  G  L  H  G  V  V  H  A  E  *  F  T  R  L  L  M  N  Y  H  R  N  L  L  T  S  L  N  S  S  R  *  T  R  M  K  V  L  A  S  R  P  D  M  G  F  E  V  S  Q  P  S  *  F  S  R  M  E  R  R  K  I  Q  S  L  V  Q  S  L  K  Q  R  *  Q  P  A  *  K  N  S  C  K  M  V  H  M  *  S  S  F  I  F  P  F  F  C  L  L  H  C  K  N  Y  N  L  I  N  L  R  F  V  C  I  V  V  L  Y  A  M  F  L  L  C  H  Y  V  C  F  N  V  S  E  V  Q  I  S  L  V  K  L  S   </first_frame>
            <second_frame>  S  P  I  K  F  Y  S  A  T  Q  I  Y  Q  P  C  Y  G  W  F  A  G  N  Y  R  S  S  S  G  R  R  R  R  C  F  A  V  V  V  S  C  F  R  S  P  V  F  C  *  I  L  S  I  Q  W  S  *  D  P  V  D  S  F  I  S  I  L  *  L  I  Y  K  I  C  S  Q  *  R  R  K  N  R  L  *  G  S  G  Y  C  C  S  S :   A  W  C  *  *  S  I  M  G  D  S  C  N  R  V  *  V  T  C  S  G  *  I  L  G  S  M  V  W  S  M  Q  N  D  S  P  G  Y  *  *  T  I  T  G  I  C  *  Q  V  *  I  L  Q  G  E  H  G  *  K  S  W  H  R  D  Q  I  W  D  S  K  Y  P  N  R  H  D  F  Q  G  W  R  E  E  R  Y  S  H  W  C  S  P  *  N  N  V  D  S  L  H  R  K  I  L  V  K  W  Y  I  C  R  A  L  L  Y  F  P  S  F  A  F  C  T  A  R  T  I  T  *  *  I  *  D  S  S  V  *  L  C  Y  M  L  C  F  F  F  V  I  M  F  A  S  M  F  L  K  F  K  F  H  W  *  N  C  L  </second_frame>
            <third_frame>   A  Q  S  N  S  T  Q  P  H  K  F  I  N  P  A  M  A  G  L  L  E  T  I  A  V  P  R  A  A  A  A  A  A  S  P  S  L  S  P  V  S  G  R  R  S  S  V  K  F  S  L  F  N  G  L  K  I  Q  S  T  R  S  S  V  S  F  S  S  F  T  K  S  V  P  S  R  G  G  R  I  V  C  E  A  Q  D  T  A  V  L   : V  P  G  V  N  D  Q  S  W  E  T  L  V  I  G  S  K  L  P  V  L  V  E  F  W  A  P  W  C  G  P  C  R  M  I  H  P  V  I  D  E  L  S  Q  E  F  A  D  K  F  K  F  F  K  V  N  T  D  E  S  P  G  I  A  T  R  Y  G  I  R  S  I  P  T  V  M  I  F  K  D  G  E  K  K  D  T  V  I  G  A  V  P  K  T  T  L  T  A  C  I  E  K  F  L  *  N  G  T  Y  V  E  L  F  Y  I  S  L  L  L  P  F  A  L  Q  E  L  *  L  D  K  S  E  I  R  L  Y  S  C  V  I  C  Y  V  S  S  L  S  L  C  L  L  Q  C  F  *  S  S  N  F  T  G  K  I  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20280" stop="20550"/>
                    <exon start="22237" stop="22550"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQSNSTQPHKFINPAMAGLLETIAVPRAAAAAASPSLSPVSGRRSSVKFSLFNGLKIQSTRSSVSFSSFTKSVPSRGGRIVCEAQDTAVLVPGVNDQSWETLVIGSKLPVLVEFWAPWCGPCRMIHPVIDELSQEFADKFKFFKVNTDESPGIATRYGIRSIPTVMIFKDGEKKDTVIGAVPKTTLTACIEKFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25060" PGL_stop="25791"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25060" e_stop="25791"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25060" e_stop="25791" e_length="732"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25060" stop="25791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333411" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAAAAAATGATATGGAGAATATGACTGGGAATACATGTCAATTATTTTATACAAACAAGTTCTCCAAATCCATGGATCCTAATGGATGTTTGAGTGTTTTAACCCAATTAATAATCCAGGTTTATATATTCAATTTTGGAAAGCAATCATAAATTATTTCTCTTTTTCATAACTTGAACTACTATATTTTTTCAACAAATGGTTTCGAGATAGGCCAGACTCAAGCTAGTAAAATGAAACTTTGTAGGGCATTGTTTTAGTGCTTGATTAAAGAGGTGTTTAAATTGACATGATTTTGTATCCAATCCATACTAATTGCTTTCATACTCTCACTCCCATTTGATTCTTAAACAGAAAGAAGGAGAAAACAATGAGCCGCTTTTCTGATTAATCCGCGAAGACCAAACTAATTATCACTCATCAAAAGTTTGTTAGTCCCATTTGTGCATTTCACGTAGTTTGCTTGCTCATACACATATGTTTGATTTCTATAGTGCATTTTGTGATTGTGAGGTCCGTGATTATTTGTGAATTTCATCTTTAATAGATTTCATGACTATCACCCGCGTTGGGTCTGATGAAGATATTTCCGTTGATAAGAAAAACTCAGTTCCATTTCCAACATCAGCCTCTGATAATGAATCTTCCTGTTTTGATTGCAACATTTGCCTTGACTCAGCACATGATCCTGTAGTCACCCTCTGCGGTCACCTCTACTGCTGGCCTTGC</gDNA_template>
            <first_frame> W  K  K  M  I  W  R  I  *  L  G  I  H  V  N  Y  F  I  Q  T  S  S  P  N  P  W  I  L  M  D  V  *  V  F  *  P  N  *  *  S  R  F  I  Y  S  I  L  E  S  N  H  K  L  F  L  F  F  I  T  *  T  T  I  F  F  Q  Q  M  V  S  R  *  A  R  L  K  L  V  K  *  N  F  V  G  H  C  F  S  A  *  L  K  R  C  L  N  *  H  D  F  V  S  N  P  Y  *  L  L  S  Y  S  H  S  H  L  I  L  K  Q  K  E  G  E  N  N  E  P  L  F  *  L  I  R  E  D  Q  T  N  Y  H  S  S  K  V  C  *  S  H  L  C  I  S  R  S  L  L  A  H  T  H  M  F  D  F  Y  S  A  F  C  D  C  E  V  R  D  Y  L  *  I  S  S  L  I  D  F  M  T  I  T  R  V  G  S  D  E  D  I  S  V  D  K  K  N  S  V  P  F  P  T  S  A  S  D  N  E  S  S  C  F  D  C  N  I  C  L  D  S  A  H  D  P  V  V  T  L  C  G  H  L  Y  C  W  P  C </first_frame>
            <second_frame>  G  K  K  *  Y  G  E  Y  D  W  E  Y  M  S  I  I  L  Y  K  Q  V  L  Q  I  H  G  S  *  W  M  F  E  C  F  N  P  I  N  N  P  G  L  Y  I  Q  F  W  K  A  I  I  N  Y  F  S  F  S  *  L  E  L  L  Y  F  F  N  K  W  F  R  D  R  P  D  S  S  *  *  N  E  T  L  *  G  I  V  L  V  L  D  *  R  G  V  *  I  D  M  I  L  Y  P  I  H  T  N  C  F  H  T  L  T  P  I  *  F  L  N  R  K  K  E  K  T  M  S  R  F  S  D  *  S  A  K  T  K  L  I  I  T  H  Q  K  F  V  S  P  I  C  A  F  H  V  V  C  L  L  I  H  I  C  L  I  S  I  V  H  F  V  I  V  R  S  V  I  I  C  E  F  H  L  *  *  I  S  *  L  S  P  A  L  G  L  M  K  I  F  P  L  I  R  K  T  Q  F  H  F  Q  H  Q  P  L  I  M  N  L  P  V  L  I  A  T  F  A  L  T  Q  H  M  I  L  *  S  P  S  A  V  T  S  T  A  G  L   </second_frame>
            <third_frame>   E  K  N  D  M  E  N  M  T  G  N  T  C  Q  L  F  Y  T  N  K  F  S  K  S  M  D  P  N  G  C  L  S  V  L  T  Q  L  I  I  Q  V  Y  I  F  N  F  G  K  Q  S  *  I  I  S  L  F  H  N  L  N  Y  Y  I  F  S  T  N  G  F  E  I  G  Q  T  Q  A  S  K  M  K  L  C  R  A  L  F  *  C  L  I  K  E  V  F  K  L  T  *  F  C  I  Q  S  I  L  I  A  F  I  L  S  L  P  F  D  S  *  T  E  R  R  R  K  Q  *  A  A  F  L  I  N  P  R  R  P  N  *  L  S  L  I  K  S  L  L  V  P  F  V  H  F  T  *  F  A  C  S  Y  T  Y  V  *  F  L  *  C  I  L  *  L  *  G  P  *  L  F  V  N  F  I  F  N  R  F  H  D  Y  H  P  R  W  V  *  *  R  Y  F  R  *  *  E  K  L  S  S  I  S  N  I  S  L  *  *  *  I  F  L  F  *  L  Q  H  L  P  *  L  S  T  *  S  C  S  H  P  L  R  S  P  L  L  L  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25594" stop="25791"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSLIDFMTITRVGSDEDISVDKKNSVPFPTSASDNESSCFDCNICLDSAHDPVVTLCGHLYCWPC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="26540" PGL_stop="25909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26540" e_stop="25909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="26540" e_stop="25909" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26540" stop="25909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGAGGCACAAGGATAAGGAAATGAAGCAACATTAGCATGGTGTATAAAGCTATATTTCTACTAAATCTCTTACTAGTCTATATTTGTCTACTATGAACTATTACCTGATTGTTGTAAGCACAACCACATATTTATACAAATATATGATGAAGATAAACATTATATGAACCTCAAAACAGGAGTAGGCACAAGATAGAGCAGCAGAAAAGAAAGATGAACAATCTGTTGAGAAATTTGTCCATCTGCATTTCTTCCCTTCTCATTCTAAGACCACTGCGTCCTCGGATGAGATAAGATCTAGGATGAGGATAAGCGATTCCAAACAGTCTTGAAGAAAACAGTTCTCCAAACACACCAACCACTGGGCTGAACAAACTGGTCATTGCTGTGCTCCCAAAGCTAGATGGAGCCAAAGCTGCGTAGTTACCAAAGGCTTGGGGGAGATATTGCCGGTGATGTTGAAATGTGGAGGGTCGTGGAGGGTAGACAGAAGTTTGACGAAGTCTCTGATGTAAGCGAGAGATTGGAGAGTCTGAATTATGCGGTGTCATCGTCCTAATAGCTCGAGGCCTATGAGGTATGTCTACATCTGCCTGATCCTTCTTGGGTTCAGACTCTAATGATGATAT</gDNA_template>
            <first_frame> K  R  G  T  R  I  R  K  *  S  N  I  S  M  V  Y  K  A  I  F  L  L  N  L  L  L  V  Y  I  C  L  L  *  T  I  T  *  L  L  *  A  Q  P  H  I  Y  T  N  I  *  *  R  *  T  L  Y  E  P  Q  N  R  S  R  H  K  I  E  Q  Q  K  R  K  M  N  N  L  L  R  N  L  S  I  C  I  S  S  L  L  I  L  R  P  L  R  P  R  M  R  *  D  L  G  *  G  *  A  I  P  N  S  L  E  E  N  S  S  P  N  T  P  T  T  G  L  N  K  L  V  I  A  V  L  P  K  L  D  G  A  K  A  A  *  L  P  K  A  W  G  R  Y  C  R  *  C  *  N  V  E  G  R  G  G  *  T  E  V  *  R  S  L  *  C  K  R  E  I  G  E  S  E  L  C  G  V  I  V  L  I  A  R  G  L  *  G  M  S  T  S  A  *  S  F  L  G  S  D  S  N  D  D   </first_frame>
            <second_frame>  K  E  A  Q  G  *  G  N  E  A  T  L  A  W  C  I  K  L  Y  F  Y  *  I  S  Y  *  S  I  F  V  Y  Y  E  L  L  P  D  C  C  K  H  N  H  I  F  I  Q  I  Y  D  E  D  K  H  Y  M  N  L  K  T  G  V  G  T  R  *  S  S  R  K  E  R  *  T  I  C  *  E  I  C  P  S  A  F  L  P  F  S  F  *  D  H  C  V  L  G  *  D  K  I  *  D  E  D  K  R  F  Q  T  V  L  K  K  T  V  L  Q  T  H  Q  P  L  G  *  T  N  W  S  L  L  C  S  Q  S  *  M  E  P  K  L  R  S  Y  Q  R  L  G  G  D  I  A  G  D  V  E  M  W  R  V  V  E  G  R  Q  K  F  D  E  V  S  D  V  S  E  R  L  E  S  L  N  Y  A  V  S  S  S  *  *  L  E  A  Y  E  V  C  L  H  L  P  D  P  S  W  V  Q  T  L  M  M  I  </second_frame>
            <third_frame>   K  R  H  K  D  K  E  M  K  Q  H  *  H  G  V  *  S  Y  I  S  T  K  S  L  T  S  L  Y  L  S  T  M  N  Y  Y  L  I  V  V  S  T  T  T  Y  L  Y  K  Y  M  M  K  I  N  I  I  *  T  S  K  Q  E  *  A  Q  D  R  A  A  E  K  K  D  E  Q  S  V  E  K  F  V  H  L  H  F  F  P  S  H  S  K  T  T  A  S  S  D  E  I  R  S  R  M  R  I  S  D  S  K  Q  S  *  R  K  Q  F  S  K  H  T  N  H  W  A  E  Q  T  G  H  C  C  A  P  K  A  R  W  S  Q  S  C  V  V  T  K  G  L  G  E  I  L  P  V  M  L  K  C  G  G  S  W  R  V  D  R  S  L  T  K  S  L  M  *  A  R  D  W  R  V  *  I  M  R  C  H  R  P  N  S  S  R  P  M  R  Y  V  Y  I  C  L  I  L  L  G  F  R  L  *  *  *  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0123M18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="28558" PGL_stop="32038"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28558" e_stop="28896"/>
            <exon e_start="28965" e_stop="29064"/>
            <exon e_start="30015" e_stop="30060"/>
            <exon e_start="30307" e_stop="30356"/>
            <exon e_start="30478" e_stop="30519"/>
            <exon e_start="30757" e_stop="30870"/>
            <exon e_start="31445" e_stop="31523"/>
            <exon e_start="31624" e_stop="31695"/>
            <exon e_start="31770" e_stop="32038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.495" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="0.976"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="28558" e_stop="28896" e_length="339"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28897" i_stop="28964" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28965" e_stop="29064" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29065" i_stop="30014" i_length="950"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30015" e_stop="30060" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30061" i_stop="30306" i_length="246"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30307" e_stop="30356" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.495" acc_prob="0.938">
            <gDNA_intron_boundary i_start="30357" i_stop="30477" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="0.976">
            <gDNA_exon_boundary e_start="30478" e_stop="30519" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30520" i_stop="30756" i_length="237"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30757" e_stop="30870" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30871" i_stop="31444" i_length="574"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31445" e_stop="31523" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.966">
            <gDNA_intron_boundary i_start="31524" i_stop="31623" i_length="100"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31624" e_stop="31695" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31696" i_stop="31769" i_length="74"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31770" e_stop="32038" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28558" stop="28896"/>
              <exon start="28965" stop="29064"/>
              <exon start="30015" stop="30060"/>
              <exon start="30307" stop="30356"/>
              <exon start="30478" stop="30519"/>
              <exon start="30757" stop="30870"/>
              <exon start="31445" stop="31523"/>
              <exon start="31624" stop="31695"/>
              <exon start="31770" stop="32038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGGCGAAAGAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAG : AGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTG : GAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAG : GTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCA : ATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAA : ATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAG : GCAAGAACTGATGCGAGAGCGTGAGAAGCACAAGCAAGAACAGGTGGAAACATTGAAGCGCGAGATGCAGAGTGGAATG : GCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAG : GCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTTCTGCAAAATTTTGGTCTACGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTTCTGTCTCCTTTTCGTTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTAAGCTTATTACTAGATATCACTAGGCTAGATGAGTTGAAATCTAGTTCATGTATTGTTGTGTAATATCATTTGCACTCCCATCTTTTTATTCTCTTCGATCTCCA</gDNA_template>
            <first_frame> N  G  E  R  A  S  K  S  F  R  R  R  K  W  S  D  S  I  E  A  A  T  Q  I  K  I  Q  K  R  R  *  I  *  I  R  T  G  T  R  S  E  K  T  P  Q  K  E  K  S  K  F  *  K  K  I  A  G  *  L  *  R  F  G  F  F  I  I  W  R  R  F  V  F  G  L  *  R  L  V  F  G  F  R  V  G  *  *  F  G  V  F  G  F  G  R  G  E  E  A  *  K  E  E  R  *  E  E  K  R  G  K  G  E  :  R  R  K  R  G  R  R  K  R  K  R  R  G  K  L  V  L  L  Q  T  L  G  E  N  M  E  S  S  R  K  L  I  C   : G  T  N  G  Q  S  L  P  H  G  W  Q  K  *  R  R :   *  I  W  K  A  C  Q  I  G  K  R  S  N  C  S  S   : N  S  W  R  I  I  T  L  Q  P  S  L  L  K   : N  I  I  T  L  T  P  I  T  D  V  K  W  K  R  K  V  E  E  V  S  R  R  S  W  T  M  N  V  L  S  S  M  M  K  N  S  A   : G  K  N  *  C  E  S  V  R  S  T  S  K  N  R  W  K  H  *  S  A  R  C  R  V  E  W :   R  K  Q  *  K  N  K  L  N  *  E  K  R  W  L  I  N  T  S  L  V  T  L  R :   L  Q  L  L  F  K  D  V  W  T  L  I  S  L  C  R  R  G  S  A  K  F  W  S  T  L  Q  R  I  T  L  D  Y  M  F  *  F  F  C  L  L  F  V  E  *  I  C  L  Q  I  H  L  Q  V  *  A  Y  Y  *  I  S  L  G  *  M  S  *  N  L  V  H  V  L  L  C  N  I  I  C  T  P  I  F  L  F  S  S  I  S  </first_frame>
            <second_frame>  M  A  K  E  R  V  K  A  S  E  D  E  N  G  A  T  P  S  K  R  Q  H  K  S  K  S  K  R  E  D  E  S  E  S  E  P  E  R  E  V  R  K  H  R  R  K  R  S  R  S  S  R  R  R  S  R  D  D  Y  D  D  S  D  S  S  S  S  G  E  D  S  Y  S  D  S  E  D  S  Y  S  D  S  E  S  G  S  S  S  E  Y  S  D  S  E  E  E  R  R  R  R  K  R  R  D  R  K  R  R  E  E  K  E  R :   E  E  R  E  E  E  E  K  E  R  E  G  E  N  W  C  C  Y  K  L  L  G  K  I  W  N  H  Q  G  N  *  Y  V  :  E  Q  T  A  R  V  Y  R  M  V  G  R  N  K  E   : G  E  S  G  K  P  A  K  L  G  R  E  A  I  V  Q  A  :  I  H  G  G  S  *  H  C  N  L  P  F  *  K  :  I  L  *  P  *  R  L  L  Q  T  *  N  G  K  G  K  *  K  R  C  Q  E  G  R  G  R  *  T  Y  C  L  R  *  *  R  T  A  Q  :  A  R  T  D  A  R  A  *  E  A  Q  A  R  T  G  G  N  I  E  A  R  D  A  E  W  N   : G  A  S  N  E  R  T  S  S  I  K  R  R  D  G  L  S  I  Q  A  W  *  L  *   : G  C  S  C  Y  S  K  T  F  G  P  *  S  P  Y  V  D  E  V  L  Q  N  F  G  L  R  Y  N  G  L  H  *  T  T  C  F  S  F  S  V  S  F  S  L  S  K  Y  A  C  R  F  I  C  K  S  K  L  I  T  R  Y  H  *  A  R  *  V  E  I  *  F  M  Y  C  C  V  I  S  F  A  L  P  S  F  Y  S  L  R  S  P </second_frame>
            <third_frame>   W  R  K  S  E  *  K  L  Q  K  T  K  M  E  R  L  H  R  S  G  N  T  N  Q  N  P  K  E  K  M  N  L  N  P  N  R  N  E  K  *  E  N  T  A  E  R  E  V  E  V  L  E  E  D  R  G  M  I  M  T  I  R  I  L  H  H  L  E  K  I  R  I  R  T  L  K  T  R  I  R  I  Q  S  R  V  V  V  R  S  I  R  I  R  K  R  R  G  G  V  E  R  G  E  I  G  R  E  E  R  K  R  R   : E  K  K  E  R  K  K  K  K  K  E  K  G  K  T  G  A  V  T  N  S  W  G  K  Y  G  I  I  K  E  T  D  M  W :   N  K  R  P  E  F  T  A  W  L  A  E  I  K  K  :  V  N  L  E  S  L  P  N  W  E  E  K  Q  L  F  K  Q :   F  M  E  D  H  N  T  A  T  F  P  S  K  K :   Y  Y  N  L  D  A  Y  Y  R  R  K  M  E  K  E  S  R  R  G  V  K  K  V  V  D  D  E  R  T  V  F  D  D  E  E  Q  R  R :   Q  E  L  M  R  E  R  E  K  H  K  Q  E  Q  V  E  T  L  K  R  E  M  Q  S  G  M  :  A  Q  A  M  K  E  Q  A  Q  L  R  E  E  M  A  Y  Q  Y  K  L  G  N  F  E  :  A  A  A  A  I  Q  R  R  L  D  P  D  L  P  M  *  T  R  F  C  K  I  L  V  Y  A  T  T  D  Y  I  R  L  H  V  L  V  F  L  S  P  F  R  *  V  N  M  L  A  D  S  S  A  S  L  S  L  L  L  D  I  T  R  L  D  E  L  K  S  S  S  C  I  V  V  *  Y  H  L  H  S  H  L  F  I  L  F  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28680" stop="28896"/>
                    <exon start="28965" stop="29064"/>
                    <exon start="30015" stop="30060"/>
                    <exon start="30307" stop="30356"/>
                    <exon start="30478" stop="30519"/>
                    <exon start="30757" stop="30870"/>
                    <exon start="31445" stop="31523"/>
                    <exon start="31624" stop="31695"/>
                    <exon start="31770" stop="31817"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENTAEREVEVLEEDRGMIMTIRILHHLEKIRIRTLKTRIRIQSRVVVRSIRIRKRRGGVERGEIGREERKRREKKERKKKKKEKGKTGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLPNWEEKQLFKQFMEDHNTATFPSKKYYNLDAYYRRKMEKESRRGVKKVVDDERTVFDDEEQRRQELMREREKHKQEQVETLKREMQSGMAQAMKEQAQLREEMAYQYKLGNFEAAAAIQRRLDPDLPM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="41492" PGL_stop="40702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41492" e_stop="40702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="41492" e_stop="40702" e_length="791"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41492" stop="40702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTGTACACATCCTACAAGGATTCTGTGAGTTTGGTGATCAAAGGCCAGGACATTGAGCTAGAAAGAATCAGCACAATTATGACAACCATAGACCTCTCGAGCAACCATTTTGAAGGTGTCATTCCAAAAACACTAAAGGATCTCAGCTCACTTTGGCTACTCAATTTATCCCATAACAATCTCATAGGTCACATTCCAATGGAATTGAGGCAATTGAATAAGCTTGAAGCGTTAGATCTCTCCTGGAATCGTCTCACCGGAAAGATTCCAAAGAAATTGATAACAATGAAGTTTCTAGCAGTCTTAAACCTCTCTCAGAATCTTCTTATTGGATCGATTCTCAAGGTCTACAATTCAACACATTTGAAAATGACTCGTATGGTGGAAACCTTGATCTATGTGGTCCTCCTTTATCAAAGCAATGTGGAACGACTGATCCATCCCATGTTCCTCAACCATTGGAATATGAAGGCGAGTCATATTTTTTTAGTGGATTTACGTGGGAATCAGTAGTCATAGGCTACAGCTTTGGACTAGTTGTTGGAACTGTTGTGTGGATCCTCGTGTTTAAATACCGTAAGCCAAAATGGTTTGTTGAATTTTTTGAAGGCATTTATCCCAAGAAAATGAGAAGGTCAATGAAGAGAGCTCAGAGACGACGCACTTAATGGAAGAATGCAAGAGTGAACTTTTCTGTTTTTTTAGTTATCTTTTTGTTGTTTGTATATATGCTTGATAACAATATAATTGCATGTGTTATTTTGTGAATTTCCACTGGATTAAAATAA</gDNA_template>
            <first_frame> S  L  Y  T  S  Y  K  D  S  V  S  L  V  I  K  G  Q  D  I  E  L  E  R  I  S  T  I  M  T  T  I  D  L  S  S  N  H  F  E  G  V  I  P  K  T  L  K  D  L  S  S  L  W  L  L  N  L  S  H  N  N  L  I  G  H  I  P  M  E  L  R  Q  L  N  K  L  E  A  L  D  L  S  W  N  R  L  T  G  K  I  P  K  K  L  I  T  M  K  F  L  A  V  L  N  L  S  Q  N  L  L  I  G  S  I  L  K  V  Y  N  S  T  H  L  K  M  T  R  M  V  E  T  L  I  Y  V  V  L  L  Y  Q  S  N  V  E  R  L  I  H  P  M  F  L  N  H  W  N  M  K  A  S  H  I  F  L  V  D  L  R  G  N  Q  *  S  *  A  T  A  L  D  *  L  L  E  L  L  C  G  S  S  C  L  N  T  V  S  Q  N  G  L  L  N  F  L  K  A  F  I  P  R  K  *  E  G  Q  *  R  E  L  R  D  D  A  L  N  G  R  M  Q  E  *  T  F  L  F  F  *  L  S  F  C  C  L  Y  I  C  L  I  T  I  *  L  H  V  L  F  C  E  F  P  L  D  *  N   </first_frame>
            <second_frame>  H  C  T  H  P  T  R  I  L  *  V  W  *  S  K  A  R  T  L  S  *  K  E  S  A  Q  L  *  Q  P  *  T  S  R  A  T  I  L  K  V  S  F  Q  K  H  *  R  I  S  A  H  F  G  Y  S  I  Y  P  I  T  I  S  *  V  T  F  Q  W  N  *  G  N  *  I  S  L  K  R  *  I  S  P  G  I  V  S  P  E  R  F  Q  R  N  *  *  Q  *  S  F  *  Q  S  *  T  S  L  R  I  F  L  L  D  R  F  S  R  S  T  I  Q  H  I  *  K  *  L  V  W  W  K  P  *  S  M  W  S  S  F  I  K  A  M  W  N  D  *  S  I  P  C  S  S  T  I  G  I  *  R  R  V  I  F  F  *  W  I  Y  V  G  I  S  S  H  R  L  Q  L  W  T  S  C  W  N  C  C  V  D  P  R  V  *  I  P  *  A  K  M  V  C  *  I  F  *  R  H  L  S  Q  E  N  E  K  V  N  E  E  S  S  E  T  T  H  L  M  E  E  C  K  S  E  L  F  C  F  F  S  Y  L  F  V  V  C  I  Y  A  *  *  Q  Y  N  C  M  C  Y  F  V  N  F  H  W  I  K  I  </second_frame>
            <third_frame>   I  V  H  I  L  Q  G  F  C  E  F  G  D  Q  R  P  G  H  *  A  R  K  N  Q  H  N  Y  D  N  H  R  P  L  E  Q  P  F  *  R  C  H  S  K  N  T  K  G  S  Q  L  T  L  A  T  Q  F  I  P  *  Q  S  H  R  S  H  S  N  G  I  E  A  I  E  *  A  *  S  V  R  S  L  L  E  S  S  H  R  K  D  S  K  E  I  D  N  N  E  V  S  S  S  L  K  P  L  S  E  S  S  Y  W  I  D  S  Q  G  L  Q  F  N  T  F  E  N  D  S  Y  G  G  N  L  D  L  C  G  P  P  L  S  K  Q  C  G  T  T  D  P  S  H  V  P  Q  P  L  E  Y  E  G  E  S  Y  F  F  S  G  F  T  W  E  S  V  V  I  G  Y  S  F  G  L  V  V  G  T  V  V  W  I  L  V  F  K  Y  R  K  P  K  W  F  V  E  F  F  E  G  I  Y  P  K  K  M  R  R  S  M  K  R  A  Q  R  R  R  T  *  W  K  N  A  R  V  N  F  S  V  F  L  V  I  F  L  L  F  V  Y  M  L  D  N  N  I  I  A  C  V  I  L  *  I  S  T  G  L  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41492" stop="40977"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLYTSYKDSVSLVIKGQDIELERISTIMTTIDLSSNHFEGVIPKTLKDLSSLWLLNLSHNNLIGHIPMELRQLNKLEALDLSWNRLTGKIPKKLITMKFLAVLNLSQNLLIGSILKVYNSTHLKMTRMVETLIYVVLLYQSNVERLIHPMFLNHWNMKASHIFLVDLRGNQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41262" stop="40822"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVRSLLESSHRKDSKEIDNNEVSSSLKPLSESSYWIDSQGLQFNTFENDSYGGNLDLCGPPLSKQCGTTDPSHVPQPLEYEGESYFFSGFTWESVVIGYSFGLVVGTVVWILVFKYRKPKWFVEFFEGIYPKKMRRSMKRAQRRRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="47306" PGL_stop="47718"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47306" e_stop="47718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="47306" e_stop="47718" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47306" stop="47718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTTTTTTCAGCAGCCAAAAAGAGAGAAAAAGAGCAGTTTTTCGCAGTCAAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGTATATTATATTCATCTCAATCTTTGATTAGAAACTGACAGAGTTGGATTTGGTGGCCTGAAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTGTTTTATGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTTATTATAGTGGAGCTTTTGGTCCTGTGATTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTG</gDNA_template>
            <first_frame> E  F  F  Q  Q  P  K  R  E  K  K  S  S  F  S  Q  S  K  F  S  P  N  S  Q  L  Q  I  A  I  P  A  S  F  L  V  R  L  S  *  F  L  D  S  I  L  Y  S  S  Q  S  L  I  R  N  *  Q  S  W  I  W  W  P  E  A  S  V  L  L  S  *  T  V  A  A  K  L  V  I  L  L  L  *  F  S  R  F  G  A  I  L  F  C  C  C  S  L  F  G  T  C  F  M  A  N  F  G  E  Q  Y  C  N  S  W  L  L  *  W  S  F  W  S  C  D  F  L  L  F  T  S  K  G  F  P  R  K  S  W   </first_frame>
            <second_frame>  S  F  F  S  S  Q  K  E  R  K  R  A  V  F  R  S  Q  N  S  A  L  T  A  N  F  K  L  R  F  P  L  R  F  L  S  D  *  A  D  F  W  T  V  Y  Y  I  H  L  N  L  *  L  E  T  D  R  V  G  F  G  G  L  K  L  Q  F  C  C  R  E  Q  *  L  R  N  W  *  F  C  S  F  N  S  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  A  L  V  L  W  P  I  L  E  N  N  I  V  T  L  G  Y  Y  S  G  A  F  G  P  V  I  F  Y  S  S  H  R  R  V  F  H  V  N  L  G  </second_frame>
            <third_frame>   V  F  S  A  A  K  K  R  E  K  E  Q  F  F  A  V  K  I  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  G  Q  Y  I  I  F  I  S  I  F  D  *  K  L  T  E  L  D  L  V  A  *  S  F  S  F  A  V  V  N  S  S  C  E  I  G  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  W  H  L  F  Y  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  L  *  F  F  T  L  H  I  E  G  F  S  T  *  I  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0123M18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="59651" PGL_stop="62512"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59651" e_stop="59801"/>
            <exon e_start="60145" e_stop="60240"/>
            <exon e_start="60740" e_stop="61268"/>
            <exon e_start="61369" e_stop="61727"/>
            <exon e_start="62068" e_stop="62512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.759" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59651" e_stop="59801" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60145" e_stop="60240" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.970">
            <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60740" e_stop="61268" e_length="529"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.759">
            <gDNA_intron_boundary i_start="61269" i_stop="61368" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61369" e_stop="61727" e_length="359"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61728" i_stop="62067" i_length="340"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="62068" e_stop="62512" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59651" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61268"/>
              <exon start="61369" stop="61727"/>
              <exon start="62068" stop="62512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313280" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTCTTACTACACACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG : GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG : AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAG : GAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAG : GTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAGAATCGAGCGCTTACCAACACGCCAACAATTATAGCGCTCACAACTTTAAGTCCACCCAACAAGCGTCATGTTCGATCAATGACTCACTCAACAATTTCCAGTATGAATGATCATGTGAATTATGATTCCGTATTCAC</gDNA_template>
            <first_frame> Q  I  L  T  T  H  T  I  S  P  K  I  I  F  *  N  L  H  L  T  I  F  S  K  Q  K  S  F  S  *  Y  N  H  G  S  S  S  C  C  I  A  S  F  Y  F  L  Y  S  K  G   : G  E  N  *  C  I  F  E  G  F  E  S  L  W  N  F  S  L  *  P  C  *  I  *  F  W  L  F  I  Q  N  Q   : E  R  K  K  V  I  P  R  S  Y  *  S  R  D  N  G  C  I  S  R  C  N  E  Y  P  C  D  R  K  E  N  L  K  K  R  L  C  S  N  H  W  S  V  F  R  T  R  T  S  Y  S  K  S  S  G  *  D  R  E  M  A  C  N  Y  G  M  *  R  L  S  *  S  *  K  S  S  K  I  S  R  D  A  *  G  E  L  Y  N  N  A  F  R  P  C  I  A  *  Q  R  Q  T  I  C  R  *  L  *  E  I  R  Q  S  S  *  C  I  G  L  Q  C  S  C  L  S  A  Y  R  E  R  A  F  V  Y  S  *  R  I  *  A  *  C  W  D  *  P  S  W  S  F  P  S  F  E  I  V  D  *  *  F  E  A  V  *  L  P  F  K  E  T  H  H  C  W  F  D  Y  R :   K  H  K  H  I  G  W  K  C  T  S  K  G  Q  P  R  G  L  E  G  F  S  K  G  A  R  W  T  *  Q  L  S  H  D  *  R  W  *  L  *  W  C  Q  S  L  Q  R  Q  Q  G  L  Q  Y  A  H  Y  A  G  I  P  *  T  I  P  R  R  D  W  H  H  I  C  L  P  I  P  W  L  H  R  D  N  R  A  I  Q  G  A  Y  P  L  V  *  A  P  F  P  S  I  P  E  V  Y  H  Q  R  I  R  L  R  G  R  I  W  K  E  T  C  T   : G  C  *  *  S  K  S  Y  K  I  R  C  V  L  E  L  E  Q  E  L  F  L  L  *  E  P  V  V  R  R  S  *  *  R  *  E  S  A  *  S  V  G  S  Q  *  E  T  R  G  I  G  L  D  F  L  L  I  E  F  N  H  H  Q  D  E  H  E  K  G  V  D  E  G  E  F  E  S  S  L  F  C  C  S  *  K  V  V  T  S  *  N  F  *  V  R  N  K  Y  H  S  S  F  *  N  R  A  L  T  N  T  P  T  I  I  A  L  T  T  L  S  P  P  N  K  R  H  V  R  S  M  T  H  S  T  I  S  S  M  N  D  H  V  N  Y  D  S  V  F   </first_frame>
            <second_frame>  K  F  L  L  H  T  L  S  V  Q  K  S  F  F  K  I  S  I  L  Q  F  F  Q  N  K  N  H  F  P  N  I  I  M  A  L  Q  A  A  A  L  L  P  S  T  F  S  I  P  K  E  :  G  K  T  S  A  S  L  K  D  S  S  L  F  G  I  S  L  S  D  H  V  K  S  D  F  G  S  S  F  K  I  K  :  S  G  R  K  S  S  L  G  A  I  R  A  E  T  M  V  A  S  P  G  V  T  S  T  P  V  T  G  K  K  T  L  R  K  G  C  V  V  I  T  G  A  S  S  G  L  G  L  A  T  A  K  A  L  A  E  T  G  K  W  H  V  I  M  A  C  R  D  F  L  K  A  E  R  A  A  K  S  A  G  M  P  K  E  N  Y  T  I  M  H  L  D  L  A  S  L  D  S  V  R  Q  F  V  D  N  F  R  R  S  G  N  P  L  D  V  L  V  C  N  A  A  V  Y  Q  P  T  A  K  E  P  S  F  T  A  E  G  F  E  L  S  V  G  T  N  H  L  G  H  F  L  L  S  R  L  L  I  D  D  L  K  Q  S  D  Y  P  S  K  R  L  I  I  V  G  S  I  T   : G  N  T  N  T  L  A  G  N  V  P  P  K  A  N  L  G  D  L  R  G  L  A  R  G  L  D  G  L  N  S  S  A  M  I  D  G  G  D  F  D  G  A  K  A  Y  K  D  S  K  V  C  N  M  L  T  M  Q  E  F  H  R  R  Y  H  E  E  T  G  I  T  F  A  S  L  Y  P  G  C  I  A  T  T  G  L  F  R  E  H  I  P  L  F  R  L  L  F  P  P  F  Q  K  F  I  T  K  G  F  V  S  E  A  E  S  G  K  R  L  A  Q  :  V  V  S  D  P  S  L  T  K  S  G  V  Y  W  S  W  N  K  N  S  S  S  F  E  N  Q  L  S  E  E  A  S  D  V  E  K  A  R  K  V  W  E  V  S  E  K  L  V  G  L  A  *  I  F  C  *  L  S  S  T  I  T  K  T  N  T  K  K  E  L  M  K  E  N  L  N  R  V  C  F  V  V  V  K  K  L  S  L  R  K  I  F  E  L  G  I  N  I  I  H  P  F  R  I  E  R  L  P  T  R  Q  Q  L  *  R  S  Q  L  *  V  H  P  T  S  V  M  F  D  Q  *  L  T  Q  Q  F  P  V  *  M  I  M  *  I  M  I  P  Y  S  </second_frame>
            <third_frame>   N  S  Y  Y  T  H  Y  Q  S  K  N  H  F  L  K  S  P  S  Y  N  F  F  K  T  K  I  I  F  L  I  *  S  W  L  F  K  L  L  H  C  F  L  L  L  S  L  F  Q  R  R :   G  K  L  V  H  L  *  R  I  R  V  S  L  E  F  L  S  L  T  M  L  N  L  I  L  A  L  H  S  K  S  R :   A  E  E  S  H  P  S  E  L  L  E  P  R  Q  W  L  H  L  P  V  *  R  V  P  L  *  Q  E  R  K  P  *  E  K  V  V  *  *  S  L  E  R  L  Q  D  *  D  *  L  Q  Q  K  L  W  L  R  Q  G  N  G  M  *  L  W  H  V  E  T  F  L  K  L  K  E  Q  Q  N  Q  Q  G  C  L  R  R  I  I  Q  *  C  I  *  T  L  H  R  L  T  A  S  D  N  L  S  I  T  L  G  D  Q  A  I  L  L  M  Y  W  F  A  M  Q  L  F  I  S  L  P  R  K  S  L  R  L  Q  L  K  D  L  S  L  V  L  G  L  T  I  L  V  I  S  F  F  R  D  C  *  L  M  I  *  S  S  L  I  T  L  Q  R  D  S  S  L  L  V  R  L  Q  :  E  T  Q  T  H  W  L  E  M  Y  L  Q  R  P  T  S  G  T  *  G  V  *  Q  G  G  S  M  D  L  T  A  Q  P  *  L  T  V  V  T  L  M  V  P  K  L  T  K  T  A  R  F  A  I  C  S  L  C  R  N  S  I  D  D  T  T  K  R  L  A  S  H  L  P  P  Y  T  L  A  A  S  R  Q  Q  G  Y  S  G  S  I  S  P  C  L  G  S  F  S  L  H  S  R  S  L  S  P  K  D  S  S  P  R  Q  N  L  E  R  D  L  H  R :   L  L  V  I  Q  V  L  Q  N  Q  V  C  T  G  A  G  T  R  T  L  P  P  L  R  T  S  C  Q  K  K  L  V  T  L  R  K  R  V  K  C  G  K  S  V  R  N  S  W  D  W  L  R  F  F  A  D  *  V  Q  P  S  P  R  R  T  R  K  R  S  *  *  R  R  I  *  I  E  S  V  L  L  *  L  K  S  C  H  F  V  K  F  L  S  *  E  *  I  S  F  I  L  L  E  S  S  A  Y  Q  H  A  N  N  Y  S  A  H  N  F  K  S  T  Q  Q  A  S  C  S  I  N  D  S  L  N  N  F  Q  Y  E  *  S  C  E  L  *  F  R  I  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59652" stop="59801"/>
                    <exon start="60145" stop="60240"/>
                    <exon start="60740" stop="61268"/>
                    <exon start="61369" stop="61727"/>
                    <exon start="62068" stop="62223"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLLHTLSVQKSFFKISILQFFQNKNHFPNIIMALQAAALLPSTFSIPKEGKTSASLKDSSLFGISLSDHVKSDFGSSFKIKSGRKSSLGAIRAETMVASPGVTSTPVTGKKTLRKGCVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGMPKENYTIMHLDLASLDSVRQFVDNFRRSGNPLDVLVCNAAVYQPTAKEPSFTAEGFELSVGTNHLGHFLLSRLLIDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLARGLDGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKFITKGFVSEAESGKRLAQVVSDPSLTKSGVYWSWNKNSSSFENQLSEEASDVEKARKVWEVSEKLVGLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="65013" PGL_stop="62728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65013" e_stop="64766"/>
            <exon e_start="64020" e_stop="63777"/>
            <exon e_start="63380" e_stop="63260"/>
            <exon e_start="63085" e_stop="62728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.367" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.940" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65013" e_stop="64766" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.367">
            <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64020" e_stop="63777" e_length="244"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.994">
            <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63380" e_stop="63260" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.940">
            <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="63085" e_stop="62728" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65013" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63865" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334587" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG : GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG : GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG : GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTTATTCGATGAC</gDNA_template>
            <first_frame> I  S  S  *  S  *  K  K  Q  K  K  K  Q  T  M  L  A  I  F  H  K  A  F  A  H  P  P  E  E  L  N  S  P  A  S  K  K  C  L  L  P  Q  Q  T  L  Q  K  F  V  S  T  R  P  F  D  T  S  Y  V  T  F  G  D  V  A  A  L  A  F  V  R  P  N  C  T  S  L  L  N  H  K  Q  R :   Y  F  C  G  Y  D  D  I  Y  C  L  F  M  G  S  L  N  N  L  C  A  Q  I  K  Q  Y  G  L  S  P  K  G  T  N  E  A  M  L  V  I  E  A  Y  R  T  L  R  D  R  G  P  Y  P  A  D  Q  V  I  K  D  F  E  G  S  F  A  F  V  I  Y  D  S  K  T  G  T  V  F  V  A  L  :  G  S  D  G  G  V  K  L  F  W  G  I  A  A  D  G  S  V  V  I  S  D  D  V  E  V  I  K  A  G  C  A  K  S  F  A  P  F  P  T   : G  C  M  F  H  S  E  K  G  L  M  N  F  E  H  P  M  N  K  M  R  A  M  P  R  V  D  S  E  G  V  M  C  G  A  N  F  K  V  D  M  Y  S  R  V  N  S  I  P  R  V  G  S  E  A  N  W  S  D  W  N  T  S  Y  *  V  D  S  L  Q  F  S  N  F  L  *  C  L  F  C  F  G  *  I  F  E  F  V  L  G  L  V  S  F  L  Y  V  L  C  T  C  V  *  R  L  K  N  K  *  N  I  R  N  D  S  A  Y  S  M   </first_frame>
            <second_frame>  F  H  L  E  A  K  K  N  K  K  K  N  K  R  C  W  L  Y  F  T  R  H  L  L  I  L  L  K  N  *  I  V  L  H  Q  K  N  V  Y  F  H  N  K  R  Y  K  N  S  Y  R  L  V  H  L  T  P  L  M  L  L  L  E  M  L  L  L  L  L  L  F  V  L  I  A  P  P  C  S  I  T  N  K   : G  I  F  V  V  M  M  I  F  T  V  C  S  W  G  V  *  T  I  C  V  H  K  S  N  N  M  G  Y  H  Q  K  V  Q  M  K  P  C  *  S  L  K  P  T  G  H  L  E  T  G  D  L  I  Q  L  I  K  L  L  R  I  L  K  E  V  L  L  L  L  S  M  I  V  K  L  E  L  Y  L  L  L  W :   V  Q  M  V  G  *  S  Y  F  G  V  L  L  L  M  D  L  W  *  F  L  M  M  *  R  L  L  K  L  D  V  L  S  H  L  H  P  F  P  Q  :  V  V  C  S  I  V  R  K  D  *  *  I  S  S  T  R  *  T  R  *  G  L  C  Q  E  *  I  V  K  G  *  C  V  E  P  T  S  K  W  I  C  I  Q  E  L  I  A  S  L  E  L  A  V  K  L  T  G  L  T  G  T  L  L  T  K  S  I  L  C  N  F  Q  T  S  F  S  V  C  S  V  L  V  R  F  S  S  L  F  *  V  W  F  L  S  C  T  C  F  A  P  V  Y  N  A  *  K  I  N  E  T  L  E  M  I  Q  L  I  R  *  </second_frame>
            <third_frame>   F  I  L  K  L  K  K  T  K  K  K  T  N  D  V  G  Y  I  S  Q  G  I  C  S  S  S  *  R  I  K  *  S  C  I  K  K  M  F  T  S  T  T  N  A  T  K  I  R  I  D  S  S  I  *  H  L  L  C  Y  F  W  R  C  C  C  S  C  F  C  S  S  *  L  H  L  L  A  Q  S  Q  T  K  :  V  F  L  W  L  *  *  Y  L  L  F  V  H  G  E  F  E  Q  F  V  C  T  N  Q  T  I  W  A  I  T  K  R  Y  K  *  S  H  A  S  H  *  S  L  Q  D  T  *  R  Q  G  T  L  S  S  *  S  S  Y  *  G  F  *  R  K  F  C  F  C  Y  L  *  *  *  N  W  N  C  I  C  C  F   : G  F  R  W  W  G  E  V  I  L  G  Y  C  C  *  W  I  C  G  D  F  *  *  C  R  G  Y  *  S  W  M  C  *  V  I  C  T  L  S  H  R :   L  Y  V  P  *  *  E  R  T  N  E  F  R  A  P  D  E  Q  D  E  G  Y  A  K  S  R  *  *  R  G  N  V  W  S  Q  L  Q  S  G  Y  V  F  K  S  *  *  H  P  *  S  W  Q  *  S  *  L  V  *  L  E  H  F  L  L  S  R  F  S  A  I  F  K  L  P  L  V  F  V  L  F  W  L  D  F  R  V  C  F  R  F  G  F  F  P  V  R  A  L  H  L  C  I  T  L  E  K  *  M  K  H  *  K  *  F  S  L  F  D  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64995" stop="64766"/>
                    <exon start="64020" stop="63777"/>
                    <exon start="63380" stop="63260"/>
                    <exon start="63085" stop="62892"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKQKKKQTMLAIFHKAFAHPPEELNSPASKKCLLPQQTLQKFVSTRPFDTSYVTFGDVAALAFVRPNCTSLLNHKQRYFCGYDDIYCLFMGSLNNLCAQIKQYGLSPKGTNEAMLVIEAYRTLRDRGPYPADQVIKDFEGSFAFVIYDSKTGTVFVALGSDGGVKLFWGIAADGSVVISDDVEVIKAGCAKSFAPFPTGCMFHSEKGLMNFEHPMNKMRAMPRVDSEGVMCGANFKVDMYSRVNSIPRVGSEANWSDWNTSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="68202" PGL_stop="68850"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68202" e_stop="68266"/>
            <exon e_start="68348" e_stop="68850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68202" e_stop="68266" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68267" i_stop="68347" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="68348" e_stop="68850" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68202" stop="68266"/>
              <exon start="68348" stop="68850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATG : GTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTACAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTCTATTGTTTTGGGACTAAATCCTTCAACTACACAAATTATCTCAAACCAAGCTCATATCATGACTGCTTTGGCTCATTCTCTCAATCATGAGTGAAGACATCATAATAATCAATTTATAATCTATCATTTTTAGTATTATTAATTTGAGATGATATTACCAAACATGTTCAAGTTGATTAAACACAAGAATGTAATTGAATAAATTGTTTTAGTAAAAAGGAAAGTTATGTTAT</gDNA_template>
            <first_frame> F  I  S  N  H  L  I  N  E  I  D  F  A  T  I  H  A  Y  T  D  Q  W :   L  S  G  Q  S  D  E  A  Q  L  A  W  M  E  K  W  I  R  S  H  W  E  D  A  R  N  I  L  K  K  P  L  V  L  A  E  F  G  K  S  S  R  S  G  E  G  S  R  D  I  F  M  S  S  V  Y  R  N  V  Y  N  L  A  K  E  G  G  T  M  G  G  S  L  V  W  Q  L  M  A  H  G  M  E  N  Y  D  D  G  Y  S  I  V  L  G  L  N  P  S  T  T  Q  I  I  S  N  Q  A  H  I  M  T  A  L  A  H  S  L  N  H  E  *  R  H  H  N  N  Q  F  I  I  Y  H  F  *  Y  Y  *  F  E  M  I  L  P  N  M  F  K  L  I  K  H  K  N  V  I  E  *  I  V  L  V  K  R  K  V  M  L  </first_frame>
            <second_frame>  S  L  V  T  I  L  S  M  K  L  I  L  L  Q  S  M  H  T  L  I  N   : G  Y  L  D  K  V  M  K  H  N  W  R  G  W  K  S  G  *  E  V  I  G  K  M  Q  E  I  Y  *  R  N  L  *  C  L  L  N  L  E  S  L  V  D  Q  V  K  D  Q  E  I  Y  L  *  V  V  C  T  E  M  C  I  I  W  Q  K  K  V  E  Q  W  E  E  V  *  Y  G  N  *  W  H  M  E  W  R  I  M  M  M  V  I  L  L  F  W  D  *  I  L  Q  L  H  K  L  S  Q  T  K  L  I  S  *  L  L  W  L  I  L  S  I  M  S  E  D  I  I  I  I  N  L  *  S  I  I  F  S  I  I  N  L  R  *  Y  Y  Q  T  C  S  S  *  L  N  T  R  M  *  L  N  K  L  F  *  *  K  G  K  L  C  Y </second_frame>
            <third_frame>   H  *  *  P  S  Y  Q  *  N  *  F  C  Y  N  P  C  I  H  *  S  M  :  V  I  W  T  K  *  *  S  T  I  G  V  D  G  K  V  D  K  K  S  L  G  R  C  K  K  Y  I  E  E  T  F  S  A  C  *  I  W  K  V  *  *  I  R  *  R  I  K  R  Y  I  Y  E  *  C  V  Q  K  C  V  *  F  G  K  R  R  W  N  N  G  R  K  F  S  M  A  T  N  G  T  W  N  G  E  L  *  *  W  L  F  Y  C  F  G  T  K  S  F  N  Y  T  N  Y  L  K  P  S  S  Y  H  D  C  F  G  S  F  S  Q  S  *  V  K  T  S  *  *  S  I  Y  N  L  S  F  L  V  L  L  I  *  D  D  I  T  K  H  V  Q  V  D  *  T  Q  E  C  N  *  I  N  C  F  S  K  K  E  S  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68202" stop="68266"/>
                    <exon start="68348" stop="68711"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FISNHLINEIDFATIHAYTDQWLSGQSDEAQLAWMEKWIRSHWEDARNILKKPLVLAEFGKSSRSGEGSRDIFMSSVYRNVYNLAKEGGTMGGSLVWQLMAHGMENYDDGYSIVLGLNPSTTQIISNQAHIMTALAHSLNHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="76330" PGL_stop="78707"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76330" e_stop="76825"/>
            <exon e_start="77488" e_stop="77492"/>
            <exon e_start="78220" e_stop="78417"/>
            <exon e_start="78499" e_stop="78707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.600"/>
          <exon-intron don_prob="0.972" acc_prob="0.935" e_score="0.995"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="76330" e_stop="76825" e_length="496"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="76826" i_stop="77487" i_length="662"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="77488" e_stop="77492" e_length="5"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="77493" i_stop="78219" i_length="727"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="78220" e_stop="78417" e_length="198"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.935">
            <gDNA_intron_boundary i_start="78418" i_stop="78498" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="78499" e_stop="78707" e_length="209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76330" stop="76825"/>
              <exon start="77488" stop="77492"/>
              <exon start="78220" stop="78417"/>
              <exon start="78499" stop="78707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGAGAAGAGGGAGAAACCCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCCTTCCTCCTCTCCCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAG : GGCCT : GGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTCGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATG : GGTATCTGAACAAAGTGATGAAGCACAATTGGTGTGGATGGAGAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGG</gDNA_template>
            <first_frame> R  K  R  R  G  R  N  P  S  P  L  S  K  P  P  P  S  S  P  L  S  I  S  S  S  L  F  L  P  N  P  S  S  S  P  S  F  P  S  A  P  L  T  L  S  L  P  L  S  R  F  S  P  F  L  F  L  S  S  L  L  S  P  P  F  S  L  F  P  A  K  Q  R  Q  Q  P  S  S  S  *  D  S  L  Q  Q  Q  L  Q  Q  P  A  S  Q  A  A  P  P  S  P  S  S  P  A  K  Q  R  Q  Q  P  A  K  A  P  A  E  A  A  T  T  N  D  G  N  S  S  A  T  T  R  I  L  I  R  *  R  H  H  Q  R  Q  Q  L  Q  E  A  S  T  T  D  D  I  N  S  D  L  V  R  E  N  I  Q  I  C  P  K   : G  P  :  G  W  V  Q  E  M  A  S  F  V  K  S  L  D  N  K  L  E  V  E  I  E  G  F  Y  G  D  S  I  P  E  R  K  S  V  N  P  G  Y  Q  V  R  T  N  F  F  S  N  Q  L  I  N  E  I  D  F  C  Y  N  P  F  I  H  *  P  M  :  G  I  *  T  K  *  *  S  T  I  G  V  D  G  E  V  D  N  K  S  L  G  R  C  K  K  Y  I  E  E  T  F  S  A  C  *  I  W  K  V  *  *  I  R  *  R  I  K  R  Y  I  Y  E  *  C  V  *  K  C  V  *  F  G  K  R  R  W  N  N   </first_frame>
            <second_frame>  E  R  E  E  G  E  T  L  P  P  S  P  S  R  L  L  L  L  P  S  P  S  P  L  L  S  S  S  Q  T  L  P  P  L  P  L  F  R  Q  P  L  S  P  F  P  S  L  F  P  V  S  P  P  S  S  S  S  P  L  F  Y  L  L  H  S  L  F  F  R  Q  S  S  D  N  N  P  A  A  A  E  T  A  Y  N  N  S  S  N  S  R  R  A  K  Q  R  R  P  L  P  L  L  R  Q  S  S  D  S  N  R  Q  K  L  R  L  K  Q  Q  Q  Q  T  T  E  I  A  A  P  P  L  A  Y  L  S  G  E  D  T  I  S  V  S  S  S  R  R  R  A  P  Q  M  I  S  T  P  T  L  L  E  K  T  F  R  S  V  Q  K  :  G  L :   V  G  F  K  K  W  R  V  L  *  S  H  *  I  T  N  W  K  L  K  L  K  D  F  M  V  I  Q  F  L  K  G  N  Q  *  I  L  V  I  K  F  E  Q  I  S  L  V  T  S  L  S  M  K  L  I  F  A  T  I  R  S  Y  I  D  Q  W :   V  S  E  Q  S  D  E  A  Q  L  V  W  M  E  K  W  I  T  S  H  W  E  D  A  R  N  I  L  K  K  P  L  V  L  A  E  F  G  K  S  S  R  S  G  E  G  S  R  D  I  F  M  S  S  V  Y  R  N  V  Y  N  L  A  K  E  G  G  T  M  </second_frame>
            <third_frame>   K  E  K  R  E  K  P  F  P  P  L  Q  A  A  S  F  F  S  P  L  H  L  L  F  S  L  P  P  K  P  F  L  L  S  L  F  S  V  S  P  S  H  P  F  P  P  S  F  P  F  L  P  L  P  L  P  L  L  S  S  I  S  S  I  L  S  F  S  G  K  A  A  T  T  T  Q  Q  Q  L  R  Q  P  T  T  T  A  P  T  A  G  E  P  S  S  A  A  L  S  L  F  S  G  K  A  A  T  A  T  G  K  S  S  G  *  S  S  N  N  K  R  R  K  *  Q  R  H  H  S  H  T  Y  P  V  K  T  P  S  A  S  A  A  P  G  G  E  H  H  R  *  Y  Q  L  R  P  C  *  R  K  H  S  D  L  S  K  R :   A   : W  L  G  S  R  N  G  E  F  C  E  V  I  R  *  Q  I  G  S  *  N  *  R  I  L  W  *  F  N  S  *  K  E  I  S  E  S  W  L  S  S  S  N  K  F  L  *  *  P  A  Y  Q  *  N  *  F  L  L  Q  S  V  H  T  L  T  N   : G  Y  L  N  K  V  M  K  H  N  W  C  G  W  R  S  G  *  Q  V  I  G  K  M  Q  E  I  Y  *  R  N  L  *  C  L  L  N  L  E  S  L  V  D  Q  V  K  D  Q  E  I  Y  L  *  V  V  C  I  E  M  C  I  I  W  Q  K  K  V  E  Q  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76331" stop="76825"/>
                    <exon start="77488" stop="77492"/>
                    <exon start="78220" stop="78250"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EREEGETLPPSPSRLLLLPSPSPLLSSSQTLPPLPLFRQPLSPFPSLFPVSPPSSSSPLFYLLHSLFFRQSSDNNPAAAETAYNNSSNSRRAKQRRPLPLLRQSSDSNRQKLRLKQQQQTTEIAAPPLAYLSGEDTISVSSSRRRAPQMISTPTLLEKTFRSVQKGLVGFKKWRVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78326" stop="78417"/>
                    <exon start="78499" stop="78706"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILVIKFEQISLVTSLSMKLIFATIRSYIDQWVSEQSDEAQLVWMEKWITSHWEDARNILKKPLVLAEFGKSSRSGEGSRDIFMSSVYRNVYNLAKEGGTM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 41 chains have been computed
$ 
$ memory statistics:
$ 26120 bytes spliced alignments in total
$ 13 spliced alignments have been stored
$ 2009 bytes was the average size of a spliced alignment
$ 19200 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1600 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 50 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 02:07:30
-->
