<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 12:18:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3349" stop="4246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3649" g_stop="3972" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3649" e_stop="3972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATAT-TTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACATAATTTATACACTTATGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3349" stop="4246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3649" g_stop="3955" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3649" e_stop="3955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATAT-TTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACATAATTTATACACTTATG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3349" stop="4101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3649" g_stop="3801" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3649" e_stop="3801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3350" stop="4375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3650" g_stop="4075" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3650" e_stop="4075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATAT-TTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACATAATTTATACACTTATGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGACACGTCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCT</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E330995" ref_strand="+" ref_description="SGN-E330995 [cTOD-10-L18]">
      <seq>cagggtttatgcttgcaacaggtgatatgatctctcttccactagaacaggttcatccagggtatattatcccaccagatactatgaactattttcttccagaactgctttctacggggcctgttcttgcaccaggtgctatgcactatttccatcaggaaatggatcatgaactctggactcatggtccgcataacagtgcaagtctatcactccaatgcgaatcagctcctagtaaggaacaacatggaaatttaggtgaaagcctgaagaatttccgtcttttcaagaaatttgatactgttcaagatcattcaggccattacttttctggacttgcatctcatgacaacctggcctctaagagttgtgccaagaggatactggaggagtggaagatactggagaaagatttacctgataccatatttgtccgagtgtatgaaacaaggatggatctgttgagagcagtgattattggagctgatggaactccttaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="14553" stop="15941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14853" g_stop="15208" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15209" i_stop="15287" i_length="79">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15288" g_stop="15351" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="420" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15352" i_stop="15557" i_length="206">
            <donor d_prob="0.805" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15558" g_stop="15641" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="504" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E330995" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14853" e_stop="15208"/>
          <exon e_start="15288" e_stop="15351"/>
          <exon e_start="15558" e_stop="15641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTTTATGCTTGCAACAGGTGATATGATCTCTCTTCCACTAGAACAGGTTCATCCAGGGTATATTATCCCACCAGATACTATGAACTATTTTCTTCCAGAACTGCTTTCTACGGGGCCTGTTCTTGCACCAGGTGCTATGCACTATTTCCATCAGGAAATGGATCATGAACTCTGGACTCATGGTCCGCATAACAGTGCAAGTCTATCACTCCAATGCGAATCAGCTCCTAGTAAGGAACAACATGGAAATTTAGGTGAAAGCCTGAAGAATTTCCGTCTTTTCAAGAAATTTGATACTGTTCAAGATCATTCAGGCCATTACTTTTCTGGACTTGCATCTCATGACAACCTGGTTAGTTTAACTGTAAGTGGTTGATAGTTTTGATTAGTCATTCATTATCTTATTTCTAAATGTTTGTTTTTCTGTATAGGCCTCTAAGAGTTGTGCCAAGAGGATACTGGAGGAGTGGAAGATACTGGAGAAAGATTTACCTGGTAACATGAGCAAATTTTCCAGTCTTTCTTAGCATTCCTACCTGATCTGTGATGATTATCTTGGCATCAAGTTATTGAAATTTGGCATACATGCTTACAGGATTTGTTTAAGTAATGAATTTCTGAGGAGCTCATAATGTGATCTGTGATAAAAATCTGCTTGTCGTATTTCATATAACCACAACTGAATGCCTTTTCATGAGCAGATACCATATTTGTCCGAGTGTATGAAACAAGGATGGATCTGTTGAGAGCAGTGATTATTGGAGCTGATGGAACTCCTTACCATG</genome_strand>
        <mrna_strand>CAGGGTTTATGCTTGCAACAGGTGATATGATCTCTCTTCCACTAGAACAGGTTCATCCAGGGTATATTATCCCACCAGATACTATGAACTATTTTCTTCCAGAACTGCTTTCTACGGGGCCTGTTCTTGCACCAGGTGCTATGCACTATTTCCATCAGGAAATGGATCATGAACTCTGGACTCATGGTCCGCATAACAGTGCAAGTCTATCACTCCAATGCGAATCAGCTCCTAGTAAGGAACAACATGGAAATTTAGGTGAAAGCCTGAAGAATTTCCGTCTTTTCAAGAAATTTGATACTGTTCAAGATCATTCAGGCCATTACTTTTCTGGACTTGCATCTCATGACAACCTG...............................................................................GCCTCTAAGAGTTGTGCCAAGAGGATACTGGAGGAGTGGAAGATACTGGAGAAAGATTTACCTG..............................................................................................................................................................................................................ATACCATATTTGTCCGAGTGTATGAAACAAGGATGGATCTGTTGAGAGCAGTGATTATTGGAGCTGATGGAACTCCTTACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E243236" ref_strand="+" ref_description="SGN-E243236 [cLEE-2-M6]">
      <seq>ttccatacaagggctaatattgaacgctaagccctatttcaatgagcctggatatgccaggatgaatggctcagcctcaggggaacgaaactcactgcgctataacgagaacacttgcatttttaatctcaagacaatggtctattgtatgaggcgaccaccacagcactttgaggattttgtcatagggcattactttcaaagctgtcaagatattcttgtggcatgtaaagcatatatggaaggtgctcgtgtgggtagccttgtcagagggtgtgttctcggcgatggtggcaagggtggtgacaaaggtggttctcggagtttcaaggccatgttggcgggattcatcggggtacttgtagaggcgttcaaaaagattggttgcgaggattgtgataagtttcttcccttggcagaaaaagcgtcaaccagagcaactccagttaagatagactgatagagactgctgaccatatgtagatttcagtactgttatacacctaatgttgacaaactagttttcagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="15688" stop="17184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15988" g_stop="16153" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16154" i_stop="16520" i_length="367">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16521" g_stop="16884" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="530" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E243236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15988" e_stop="16153"/>
          <exon e_start="16521" e_stop="16884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATACAAGGGCTAATATTGAACGCTAAGCCCTATTTCAATGAGCCTGGATATGCCAGGATGAATGGCTCAGCCTCAGGGGAACGAAACTCACTGCGCTATAACGAGAACACTTGCATTTTTAATCTCAAGACAATGGTCTATTGTATGAGGCGACCACCACAGGTATATCGTTTATGACCATCAATAACTTAATGAACTTTTCAATTATGCCTTGCGATGTTTTTTCCATGCGATTTATCTGTTGGAACAGTAAAATTACAAAACTAAATTCTAACGTCTCATTAAGTAACTGAACCTTTAACATTGTAACAACAAAGTGACTAAACTTTCCTCCCTTGTAACAACAACAAAGTCATGACTATTTTGTCGATAGAGATGCAGAATTTCACCATTATAACAGTCTAGTCACAAGACTTTTCCTTATAACAACAAAACTTACTCGTCTAGGTGACTTTATTGTAATAGTTGTGTGACTTTTTCGTTCTAAATTAAGTACTACGAATTTGAACATTCTGCTTTTTTGCTGCAGCACTTTGAGGATTTTGTCATAGGGCATTACTTTCAAAGCTGTCAAGATATTCTTGTGGCATGTAAAGCATATATGGAAGGTGCTCGTGTGGGTAGCCTTGTCAGAGGGTGTGTTCTCGGCGATGGTGGCAAGGGTGGTGACAAAGGTGGTTCTCGGAGTTTCAAGGCCATGTTGGCGGGATTCATCGGGGTACTTGTAGAGGCGTTCAAAAAGATTGGTTGCGAGGATTGTGATAAGTTTCTTCCCTTGGCAGAAAAAGCGTCAACCAGAGCAACTCCAGTTAAGATAGACTGATAGAGACTGCTGACCATATGTAGATTTCAGTACTGTTATACACCTAATGTTGACAAACTAGTTTTCAGAC</genome_strand>
        <mrna_strand>TTCCATACAAGGGCTAATATTGAACGCTAAGCCCTATTTCAATGAGCCTGGATATGCCAGGATGAATGGCTCAGCCTCAGGGGAACGAAACTCACTGCGCTATAACGAGAACACTTGCATTTTTAATCTCAAGACAATGGTCTATTGTATGAGGCGACCACCACAG...............................................................................................................................................................................................................................................................................................................................................................................CACTTTGAGGATTTTGTCATAGGGCATTACTTTCAAAGCTGTCAAGATATTCTTGTGGCATGTAAAGCATATATGGAAGGTGCTCGTGTGGGTAGCCTTGTCAGAGGGTGTGTTCTCGGCGATGGTGGCAAGGGTGGTGACAAAGGTGGTTCTCGGAGTTTCAAGGCCATGTTGGCGGGATTCATCGGGGTACTTGTAGAGGCGTTCAAAAAGATTGGTTGCGAGGATTGTGATAAGTTTCTTCCCTTGGCAGAAAAAGCGTCAACCAGAGCAACTCCAGTTAAGATAGACTGATAGAGACTGCTGACCATATGTAGATTTCAGTACTGTTATACACCTAATGTTGACAAACTAGTTTTCAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E711473" ref_strand="+" ref_description="SGN-E711473 [FB02AD10]">
      <seq>cgagccataaagcccaatcaaattctactcagccacacaaatttatcccccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccctcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttatatgctatgtttcttctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19973" stop="22974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20269" g_stop="20550" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22674" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="720" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E711473" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20269" e_stop="20550"/>
          <exon e_start="22237" e_stop="22674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAAAAAAGCCCAATCAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGT</genome_strand>
        <mrna_strand>CGAGCCATAAAGCCCAATCAAATTCTACTCAGCCACACAAATTTATCCCCCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCCTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E397330" ref_strand="+" ref_description="SGN-E397330 [TUS-45-D3]">
      <seq>tcaaattctactcagccacacaaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19986" stop="22561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20286" g_stop="20550" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22261" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="290" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E397330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20286" e_stop="20550"/>
          <exon e_start="22237" e_stop="22261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATG</genome_strand>
        <mrna_strand>TCAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E291664" ref_strand="+" ref_description="SGN-E291664 [cLET-6-G21]">
      <seq>caaattctactcagccacactaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattntcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19987" stop="22816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20287" g_stop="20550" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22516" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="544" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E291664" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20287" e_stop="20550"/>
          <exon e_start="22237" e_stop="22516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAAC</genome_strand>
        <mrna_strand>CAAATTCTACTCAGCCACACTAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTNTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E282652" ref_strand="+" ref_description="SGN-E282652 [cLER-15-G18]">
      <seq>caaattctactcagccacacaaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaagatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19987" stop="22674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20287" g_stop="20550" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22374" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="402" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E282652" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20287" e_stop="20550"/>
          <exon e_start="22237" e_stop="22374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTG</genome_strand>
        <mrna_strand>CAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAAGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E541302" ref_strand="+" ref_description="SGN-E541302 [TUS-62-A9]">
      <seq>ttctactcagccacacaaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttaaaannnnnnnnnnnnnnnnn</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19991" stop="22955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20291" g_stop="20550" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22673" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="697" r_length="437" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E541302" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20291" e_stop="20550"/>
          <exon e_start="22237" e_stop="22673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTG</genome_strand>
        <mrna_strand>TTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTAAAANNNNNNNNNNNNNNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E541299" ref_strand="-" ref_description="SGN-E541299 [TUS-62-A9]">
      <seq>ttctactcagccacacaaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19991" stop="22955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20291" g_stop="20550" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22652" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="676" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="697"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E541299" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541299" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20291" e_stop="20550"/>
          <exon e_start="22237" e_stop="22652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTT</genome_strand>
        <mrna_strand>TTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E346687" ref_strand="+" ref_description="SGN-E346687 [cTOF-28-K14]">
      <seq>acacaaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggaattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctctttatatttcccttcttttgccttttgcactgcaagactataacttgataatctgagattcgctgtataggntgggtatatgctatgtttcttctttggcattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="20003" stop="22980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20303" g_stop="20550" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22680" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="689" r_length="441" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E346687" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20303" e_stop="20550"/>
          <exon e_start="22237" e_stop="22680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGG-ATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTAT</genome_strand>
        <mrna_strand>ACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGAATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTC-TTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAG-ACTATAACTTGAT-AATCTGAGATTCG-CTGTATAGGNTGGGTATATGCTATGTTTCTTCTTTGGCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E734934" ref_strand="+" ref_description="SGN-E734934 [LB13DH12]">
      <seq>cacaaatttatcaaccctgctatggctggtttgctggaaactatcgcagttcctcgggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccctcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttatatgctatgtttcttctttgtcattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="20004" stop="22979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20304" g_stop="20550" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22681" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="692" r_length="445" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E734934" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20304" e_stop="20550"/>
          <exon e_start="22237" e_stop="22681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATG</genome_strand>
        <mrna_strand>CACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCCTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E294801" ref_strand="+" ref_description="SGN-E294801 [cLET-17-P7]">
      <seq>cacgtgctatggctggtttgctggaaactatcgcagttcctggggccgccgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccgggcttctgttaaattctctctattcaatgggcttaagatccaggcgactcgttcatcaatatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgcgaggctcacgatactgctgttctagtgcctggtgttaatgatcaatcatgggagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="20019" stop="22569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20317" g_stop="20550" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22269" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="267" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E294801" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20317" e_stop="20550"/>
          <exon e_start="22237" e_stop="22269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTC</genome_strand>
        <mrna_strand>CACGTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTGGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGGCTTCTGTTAAATTCTCTCTATTCAATGGGCTTAAGATCCAGGCGACTCGTTCATCAATATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGCGAGGCTCACGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E280258" ref_strand="+" ref_description="SGN-E280258 [cLER-1-A9]">
      <seq>tgctggaaactatcgcagttcctcgggccgtcgccgccgctgcttcgccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="20035" stop="22816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20335" g_stop="20550" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22516" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="496" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E280258" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20335" e_stop="20550"/>
          <exon e_start="22237" e_stop="22516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAAC</genome_strand>
        <mrna_strand>TGCTGGAAACTATCGCAGTTCCTCGGGCCGTCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E293019" ref_strand="+" ref_description="SGN-E293019 [cLET-12-H4]">
      <seq>gccgtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaagatactgctgttctagtgcctggtgttaatgatcaatcatgggagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="20081" stop="22569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20381" g_stop="20550" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22269" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="203" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E293019" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20381" e_stop="20550"/>
          <exon e_start="22237" e_stop="22269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTC</genome_strand>
        <mrna_strand>GCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAAGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E280259" ref_strand="-" ref_description="SGN-E280259 [cLER-1-A9]">
      <seq>gtcgttgtctcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="20084" stop="22955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20384" g_stop="20550" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22662" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="593" r_length="426" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E280259" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280259" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20384" e_stop="20550"/>
          <exon e_start="22237" e_stop="22662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATG</genome_strand>
        <mrna_strand>GTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E292457" ref_strand="+" ref_description="SGN-E292457 [cLET-1-P16]">
      <seq>tcctgtttccggtcgccggtcttctgttaaattctctctattcaatggtcttaagatccagtcgactcgatcatcagtatcctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcacgatactgctgttctagtgcctggggttaatgatcaatcatgggagactcttgtgatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggctggagagaagaaagatacaggcgttggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtggaatggtacatatgtagagctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="20093" stop="22874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20393" g_stop="20550" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22574" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="496" r_length="338" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E292457" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20393" e_stop="20550"/>
          <exon e_start="22237" e_stop="22574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTT</genome_strand>
        <mrna_strand>TCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGATCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCACGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGGGTTAATGATCAATCATGGGAGACTCTTGTGATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGCTGGAGAGAAGAAAGATACAGGCGTTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTGGAATGGTACATATGTAGAGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E398711" ref_strand="-" ref_description="SGN-E398711 [TUS-45-D3]">
      <seq>tgttaaattctctctattcaatggtcttaagatccagtcgactcgttcatcagtatccctttagctcatttacaaaatctgttcccagtagaggaggaagaatcgtctgtgaggctcaggatactgctgttctagtgcctggtgttaatgatcaatcatgggagactcttgtaatcgggtttaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttatatgctatgtttcttctttgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="20117" stop="24590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20417" g_stop="20550" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22237" g_stop="22675" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="574" r_length="439" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22676" i_stop="23390" i_length="715">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23391" g_stop="23407" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="591" r_length="17" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E398711" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398711" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20417" e_stop="20550"/>
          <exon e_start="22237" e_stop="22675"/>
          <exon e_start="23391" e_stop="23407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTAT-CCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAGGTGCTTATCTCTTTTCTCATCCTTATTTGAGTTTTGCCTGTAGATTGAGTTGATTGGGGATTTTTTTTGTTGTTAAAACTTAATTATGACCAAAAAAATGATTTAACACGCAATTGAAAGTAGCAAAGCAAAGATAATTCAGGATTTGAACTTTACGAGTTCGAGTTTGGCATTTCTAGTATAGTAGGTAGTTGAGTATTGTATTGCTTTCCAGCTGGATGGGCTTGATGGTAGTTTGATGCACTGTAGCTGTTTCTATGTTCATACTAGTTTTAGTAGCATTGTTCTCGTAGTTTCTTTTCAGATGATTTTTGTTTTTTTCTGTGTTTTGGTTATCGTATTATTTGGCTATTTTCTGAATCATGTTATGTAATGTTTTCCCTAATATTTGTTGTGTCCTCTTTACTCGTGTAATTTTCTTTTTAAACTTCTTTGATGTGCATTACTCGAGCGAAGGGTCTATTAGAATCAATCTCTCCACCTTCTACGTGGAGCTCTAAGGTCGTGCACACTCTACACTTCCAATCATCTTGGGGGTTTTGTTGTTTTAAATTATTAGCTGTATTCACTTATAGTGTGTTTTCTTATTTACAAATTTTACTTTTTAAATTTTTTTAAGAATTTGTATGCGAATTCGTAGTTAAAATCAAATGTTTTGACCCTTGTATTTTGTACTCTTTTCACATATTGGGCAGAGTGAGTACTGACTAATGAGCAAAAGCTACCGAGTTTCGACAAATCCGTAACATTAACACTACATCCACCCATATGGCAGAGTAGGCTTGTTGTCATGATTCAAAAATATTAGCTATCTACTGCTACAATTGTCAATTATTTACCAGATTATCGCTCCCAGATTATCACAGTCTTAAATTTGATGAGAAGTCAGTTCCATGACATTCAAGTTGGATATTCAACAGCTCATTAAAGAGTAAATCAAGTTTCTATGAACAATGCAGAAATCAAATGAGTGGAAAGACTACTAGAATCTATGTTGTTTGGACTCCCCATAATTGTTGCCGTACCCGTGTCAAATCTTCAACAATGCACTACTTGTGGAGGATCCTACACACACTCGTCCATATATTTTAAGAGTCCAAATAACATAAACTAGAATTACCTGATGCGTGTAAAAGAATTGAAGTAAATCCATCAAAGTGGAATGAATACATATTTGGAGAGTGTAAACTCTAACAAATCCTACCATTTGAACTTCATTTACTGTTAAATATTTGAACTCCTTTGAGGTACATTACTATTGTAGTAAAAGCGATAATTGCATATATGTTCTAATTTCTACTTTCTCCTTGACATTATGTGGAACTATATTCAGATCACAGGATTCAGTACGGTGTGTTTACATCCCATGCTTCGTTCATTCTTCGCTAAAAAGGGGATGAATCACTTGTGCTTTTTTGTGTGAGAGCACAGGCGTTGCCCTTGTAATAATAATAATAATCCTAGTTAGAAAAATGTAATCCTCTGTTGTCAAATCTTCCATGCTAGCCAACACTCTGACTAATTACAAGGAGTAATGCAACAAATATGATGCACCGATGTCTTACGTTGTAATTTTTGGTTGTCGAGGTATTACATGAAGTGGAATACATATTAGGGTGCTAAAACTGTAATCCATTATTTTATCAGCTTTTTTTGTTTATTTAACATAGTTATTGTAAAATGCAGTGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATGTTTGCTTCAATGTTTCTGAAGTTCAAATTTCACTGGTAAAATTGTCTCTATATTGGCTTCATTTCACCATCAATGAAGATGGTCTCCCCGATAACACTTTTTTTTTTTTTAAAGATATTTGGGGTTTCACCATGGATGGAGCCACCTTAGGTTAAAAGATGGTTCAGTGTTCACTCTTCGTCGGAAAATTATATAGTGCACAAAGGGTTAATTTAGCTATTATGAATGTATATTTGATTCTGTCATCCCCTTTGTATGAGCTCTAGTTTAACTAATCAACATCCACACATTAATCTTACACAAAAAATCTATGGATAGTCAGTTACTCCTATTAAACTAATATTTTGAAGGAAAAAAGGATAAATATACTTTGAACTGTCGTACGTGGTATGCAGATTATCTTTCTTCATATTTTTGAGACATTAGTACCTCTATCGTTCAAAAACTAGGCATATATGTCCTTCACTTTAACGAAAAACTAAATAAAGATACGTGGCTCAATGTTATCCGTTGATAAGATATTTAATAAATATCGGATCTGTGTATTAGATTATGACATGTATATATCCGTTAGTATAAAAGATATATATATATATATATATTTTAGCTTTTGAACGGTAGAAACATCTATATTCCAAAAGTATGACGAAAGATATCTATATAATATTTACGATAATTCGCAAATATGTATATTCTTTTTTGCTTTTTGAATATAAGAAAAAAAAA</genome_strand>
        <mrna_strand>TGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTTTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E349577" ref_strand="+" ref_description="SGN-E349577 [cTOS-1-J19]">
      <seq>ttgtaatcgggtctaagttacctgttctggttgaattttgggctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttatatgctatgtttcttctttgtcattatgtttgcttcaatgtttctgaagttcaaatttcactggtaaaattgtctctatattggcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="21970" stop="23042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22270" g_stop="22751" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E349577" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22270" e_stop="22751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATGTTTGCTTCAATGTTTCTGAAGTTCAAATTTCACTGGTAAAATTGTCTCTATATTGGCTTCATTTCACCAT</genome_strand>
        <mrna_strand>TTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATGTTTGCTTCAATGTTTCTGAAGTTCAAATTTCACTGGTAAAATTGTCTCTATATTGGCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E239105" ref_strand="-" ref_description="SGN-E239105 [cLEL-9-P12]">
      <seq>ccccagttctggttgaattttgggctccatggtgtggtccatgcagaatgattctcccggttattaatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataccttgataaatctgagattcgtctgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="21990" stop="22944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22288" g_stop="22644" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="372"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E239105" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239105" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22288" e_stop="22644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATA</genome_strand>
        <mrna_strand>CCCCAGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCTCCCGGTTATTAATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATACCTTGATAAATCTGAGATTCGTCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E294998" ref_strand="+" ref_description="SGN-E294998 [cLET-17-L4]">
      <seq>ctccatggtgtggtccatgcagaatgattcacccggttattgatgaactatcacaggaatttgctgacaagtttaaattcttcaaggtgaacacggatgaaagtcctggcatcgcgaccagatatgggattcgaagtatcccaaccgtcatgattttcaaggatggagagaagaaagatacagtcattggtgcagtccctaaaacaacgttgacagcctgcatagaaaaattcttgtaaaatggtacatatgtagagctcttttatatttcccttcttttgccttttgcactgcaagaactataacttgataaatctgagattcgtctgtatagttgtgttatatgctatgtttcttctttgtcattatgtttgcttcaatgtttctgaagttcaaatttcactggtaaaattgtctctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="22012" stop="23033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22312" g_stop="22730" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="433"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E294998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22312" e_stop="22730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATGTTTGCTTCAATGTTTCTGAAGTTCAAATTTCACTGGTAAAATTGTCTCT</genome_strand>
        <mrna_strand>CTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATGTTTGCTTCAATGTTTCTGAAGTTCAAATTTCACTGGTAAAATTGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E379903" ref_strand="+" ref_description="SGN-E379903 [TUS-1-C21]">
      <seq>tggaaaaaaatgatatggagaatatgactgggaatacatgtcaattattttatacaaacaagttctccaaatccatggatcctaatggatgtttgagtgttttaacccaattaataatccaggtttatatattcaattttggaaagcaatcataaattatttctctttttcataacttgaactactatattttttcaacaaatggtttcgagataggccagactcaagctagtaaaatgaaactttgtagggcattgttttagtgcttgattaaagaggtgtttaaattgacatgattttgtatccaatccatactaattgctttcatactctcactcccatttgattcttaaacagaaagaaggagaaaacaatgagccgcttttctgattaatccgcgaagaccaaactaattatcactcatcaaaagtttgttagtcccatttgtgcatttcacgtagtttgcttgctcatacacatatgtttgatttctatagtgcattttgtgattgtgaggtccgtgattatttgtgaatttcatctttaatagatttcatgactatcacccgcgttgggtctgatgaagatatttccgttgataagaaaaactcagttccatttccaacatcagcctctgataatgaatcttcctgttttgattgcaacatttgccttgactcagcacatgatcctgtagtcaccctctgcggtcacctctactgctggccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="24760" stop="26091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25060" g_stop="25791" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E379903" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25060" e_stop="25791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAAAAATGATATGGAGAATATGACTGGGAATACATGTCAATTATTTTATACAAACAAGTTCTCCAAATCCATGGATCCTAATGGATGTTTGAGTGTTTTAACCCAATTAATAATCCAGGTTTATATATTCAATTTTGGAAAGCAATCATAAATTATTTCTCTTTTTCATAACTTGAACTACTATATTTTTTCAACAAATGGTTTCGAGATAGGCCAGACTCAAGCTAGTAAAATGAAACTTTGTAGGGCATTGTTTTAGTGCTTGATTAAAGAGGTGTTTAAATTGACATGATTTTGTATCCAATCCATACTAATTGCTTTCATACTCTCACTCCCATTTGATTCTTAAACAGAAAGAAGGAGAAAACAATGAGCCGCTTTTCTGATTAATCCGCGAAGACCAAACTAATTATCACTCATCAAAAGTTTGTTAGTCCCATTTGTGCATTTCACGTAGTTTGCTTGCTCATACACATATGTTTGATTTCTATAGTGCATTTTGTGATTGTGAGGTCCGTGATTATTTGTGAATTTCATCTTTAATAGATTTCATGACTATCACCCGCGTTGGGTCTGATGAAGATATTTCCGTTGATAAGAAAAACTCAGTTCCATTTCCAACATCAGCCTCTGATAATGAATCTTCCTGTTTTGATTGCAACATTTGCCTTGACTCAGCACATGATCCTGTAGTCACCCTCTGCGGTCACCTCTACTGCTGGCCTTGC</genome_strand>
        <mrna_strand>TGGAAAAAAATGATATGGAGAATATGACTGGGAATACATGTCAATTATTTTATACAAACAAGTTCTCCAAATCCATGGATCCTAATGGATGTTTGAGTGTTTTAACCCAATTAATAATCCAGGTTTATATATTCAATTTTGGAAAGCAATCATAAATTATTTCTCTTTTTCATAACTTGAACTACTATATTTTTTCAACAAATGGTTTCGAGATAGGCCAGACTCAAGCTAGTAAAATGAAACTTTGTAGGGCATTGTTTTAGTGCTTGATTAAAGAGGTGTTTAAATTGACATGATTTTGTATCCAATCCATACTAATTGCTTTCATACTCTCACTCCCATTTGATTCTTAAACAGAAAGAAGGAGAAAACAATGAGCCGCTTTTCTGATTAATCCGCGAAGACCAAACTAATTATCACTCATCAAAAGTTTGTTAGTCCCATTTGTGCATTTCACGTAGTTTGCTTGCTCATACACATATGTTTGATTTCTATAGTGCATTTTGTGATTGTGAGGTCCGTGATTATTTGTGAATTTCATCTTTAATAGATTTCATGACTATCACCCGCGTTGGGTCTGATGAAGATATTTCCGTTGATAAGAAAAACTCAGTTCCATTTCCAACATCAGCCTCTGATAATGAATCTTCCTGTTTTGATTGCAACATTTGCCTTGACTCAGCACATGATCCTGTAGTCACCCTCTGCGGTCACCTCTACTGCTGGCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E201292" ref_strand="+" ref_description="SGN-E201292 [cLEC-4-A5]">
      <seq>tggaaaaaaatgatatggagaatatgactgggaatacatgtcaattattttatacaaacaagttctccaaatccatggatcctaatggatgtttgagtgttttaacccaattaataatccaggtttatatattcaattttggaaagcaatcataaattatttctctttttcataacttgaactactatattttttcaacaaatggtttcgagataggccagactcaagctagttaaatgaaactttgtagggcattgttttagtgcttgattaaagaggtgtttaaattgacatgattttgtatccaatccatactaattgctttcatactctcactcccatttgattcttaaacagaaagaaggagaaaacaatgagccgcttttctgattaatccgcgaagaccaaactaattatcactcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="24760" stop="25785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25060" g_stop="25485" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E201292" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25060" e_stop="25485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAAAAATGATATGGAGAATATGACTGGGAATACATGTCAATTATTTTATACAAACAAGTTCTCCAAATCCATGGATCCTAATGGATGTTTGAGTGTTTTAACCCAATTAATAATCCAGGTTTATATATTCAATTTTGGAAAGCAATCATAAATTATTTCTCTTTTTCATAACTTGAACTACTATATTTTTTCAACAAATGGTTTCGAGATAGGCCAGACTCAAGCTAGTAAAATGAAACTTTGTAGGGCATTGTTTTAGTGCTTGATTAAAGAGGTGTTTAAATTGACATGATTTTGTATCCAATCCATACTAATTGCTTTCATACTCTCACTCCCATTTGATTCTTAAACAGAAAGAAGGAGAAAACAATGAGCCGCTTTTCTGATTAATCCGCGAAGACCAAACTAATTATCACTCATCA</genome_strand>
        <mrna_strand>TGGAAAAAAATGATATGGAGAATATGACTGGGAATACATGTCAATTATTTTATACAAACAAGTTCTCCAAATCCATGGATCCTAATGGATGTTTGAGTGTTTTAACCCAATTAATAATCCAGGTTTATATATTCAATTTTGGAAAGCAATCATAAATTATTTCTCTTTTTCATAACTTGAACTACTATATTTTTTCAACAAATGGTTTCGAGATAGGCCAGACTCAAGCTAGTTAAATGAAACTTTGTAGGGCATTGTTTTAGTGCTTGATTAAAGAGGTGTTTAAATTGACATGATTTTGTATCCAATCCATACTAATTGCTTTCATACTCTCACTCCCATTTGATTCTTAAACAGAAAGAAGGAGAAAACAATGAGCCGCTTTTCTGATTAATCCGCGAAGACCAAACTAATTATCACTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E379864" ref_strand="+" ref_description="SGN-E379864 [TUS-1-C21]">
      <seq>aaaagaggcacaaggttcaggaaatgaagcaacattagcatggtgtataaagctatatttctactaaatctcttactagtctatatttgtctactatgaactattacctgattgttgtaagcacaaccacatatttatacaaatatatgatgaagataaacattatatgaacctcaaaacaggagtaggcacaagatagagcagcagaaaagaaagatgaacaatctgttgagaaatttgtccatctgcatttcttcccttctcattctaagaccactgcgtcctcggatgagataagatctaggatgaggataagcgattccaaacagtcttgaagaaaacagttctccaaacacaccaaccactgggctgaacaaactggtcattgctgtgctcccaaagctagatggagccaaagctgcgtagttaccaaaggcttgggggagatattgccggtgatgttgaaatgtggagggtcgtggagggtagacagaagtttgacgaagtctctgatgtaagcgagagattggagagtctgaattatgcggtgtcatcgtcctaatagctcgaggcctatgaggtatgtctacatctgcctgatccttcttgggttcagactctaatgatgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="26840" stop="25609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26540" g_stop="25909" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E379864" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26540" e_stop="25909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGGCACAAGGATAAGGAAATGAAGCAACATTAGCATGGTGTATAAAGCTATATTTCTACTAAATCTCTTACTAGTCTATATTTGTCTACTATGAACTATTACCTGATTGTTGTAAGCACAACCACATATTTATACAAATATATGATGAAGATAAACATTATATGAACCTCAAAACAGGAGTAGGCACAAGATAGAGCAGCAGAAAAGAAAGATGAACAATCTGTTGAGAAATTTGTCCATCTGCATTTCTTCCCTTCTCATTCTAAGACCACTGCGTCCTCGGATGAGATAAGATCTAGGATGAGGATAAGCGATTCCAAACAGTCTTGAAGAAAACAGTTCTCCAAACACACCAACCACTGGGCTGAACAAACTGGTCATTGCTGTGCTCCCAAAGCTAGATGGAGCCAAAGCTGCGTAGTTACCAAAGGCTTGGGGGAGATATTGCCGGTGATGTTGAAATGTGGAGGGTCGTGGAGGGTAGACAGAAGTTTGACGAAGTCTCTGATGTAAGCGAGAGATTGGAGAGTCTGAATTATGCGGTGTCATCGTCCTAATAGCTCGAGGCCTATGAGGTATGTCTACATCTGCCTGATCCTTCTTGGGTTCAGACTCTAATGATGATAT</genome_strand>
        <mrna_strand>AAAAGAGGCACAAGGTTCAGGAAATGAAGCAACATTAGCATGGTGTATAAAGCTATATTTCTACTAAATCTCTTACTAGTCTATATTTGTCTACTATGAACTATTACCTGATTGTTGTAAGCACAACCACATATTTATACAAATATATGATGAAGATAAACATTATATGAACCTCAAAACAGGAGTAGGCACAAGATAGAGCAGCAGAAAAGAAAGATGAACAATCTGTTGAGAAATTTGTCCATCTGCATTTCTTCCCTTCTCATTCTAAGACCACTGCGTCCTCGGATGAGATAAGATCTAGGATGAGGATAAGCGATTCCAAACAGTCTTGAAGAAAACAGTTCTCCAAACACACCAACCACTGGGCTGAACAAACTGGTCATTGCTGTGCTCCCAAAGCTAGATGGAGCCAAAGCTGCGTAGTTACCAAAGGCTTGGGGGAGATATTGCCGGTGATGTTGAAATGTGGAGGGTCGTGGAGGGTAGACAGAAGTTTGACGAAGTCTCTGATGTAAGCGAGAGATTGGAGAGTCTGAATTATGCGGTGTCATCGTCCTAATAGCTCGAGGCCTATGAGGTATGTCTACATCTGCCTGATCCTTCTTGGGTTCAGACTCTAATGATGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E227571" ref_strand="+" ref_description="SGN-E227571 [cLEL-30-M4]">
      <seq>tttttttttttttttttncctctcttctcttcctatctcggctctttctacgcctcctctcctcttccgaatccgaatactccgaactactacccgactctgaatccgaatacgagtcttcagagtccgaatacgaatcttctccagatgatgaagaatccgaatcgtcataatcatcccgcgatcttcttctagaacttcgacttctctttctgcggtgttttctcacttctcgttccggttcggattcagattcatcttctcttttggattttgatttgtgttgccgcttcgatggagtcgctccattttcgtcttctgaagcttttactcgctctttcgccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29206" stop="28259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28904" g_stop="28558" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E227571" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28904" e_stop="28558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTCTCTCCTTTTCCTCTCTTCTCTTCCTATCTCTCCTCTTTCTACGCCTCCTCTCCTCTTCCGAATCCGAATACTCCGAACTACTACCCGACTCTGAATCCGAATACGAGTCTTCAGAGTCCGAATACGAATCTTCTCCAGATGATGAAGAATCCGAATCGTCATAATCATCCCGCGATCTTCTTCTAGAACTTCGACTTCTCTTTCTGCGGTGTTTTCTCACTTCTCGTTCCGGTTCGGATTCAGATTCATCTTCTCTTTTGGATTTTGATTTGTGTTGCCGCTTCGATGGAGTCGCTCCATTTTCGTCTTCTGAAGCTTTTACTCGCTCTTTCGCCATT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTNCCTCTCTTCTCTTCCTATCTCGGCTCTTTCTACGCCTCCTCTCCTCTTCCGAATCCGAATACTCCGAACTACTACCCGACTCTGAATCCGAATACGAGTCTTCAGAGTCCGAATACGAATCTTCTCCAGATGATGAAGAATCCGAATCGTCATAATCATCCCGCGATCTTCTTCTAGAACTTCGACTTCTCTTTCTGCGGTGTTTTCTCACTTCTCGTTCCGGTTCGGATTCAGATTCATCTTCTCTTTTGGATTTTGATTTGTGTTGCCGCTTCGATGGAGTCGCTCCATTTTCGTCTTCTGAAGCTTTTACTCGCTCTTTCGCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E229886" ref_strand="+" ref_description="SGN-E229886 [cLEL-33-G5]">
      <seq>tttttttttttttttttccggtcttctcttcctatctctcctctttctacgcctcctctcctcttccgaatccgaatactccgaactactacccgactctgaatccgaatacgagtcttcagagtccgaatacgaatcttctccagatgatgaagaatccgaatcgtcataatcatcccgcgatcttcttctagaacttcgacttctctttctgcggtgttttctcacttctcgttccggttcggattcagattcatcttctcttttggattttgatttgtgttgccgcttcgatggagtcgctccattttcgtcttctgaagcttttacctggtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29206" stop="28271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28903" g_stop="28566" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E229886" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28903" e_stop="28566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTCTCCTTTTCCTCTCTTCTCTTCCTATCTCTCCTCTTTCTACGCCTCCTCTCCTCTTCCGAATCCGAATACTCCGAACTACTACCCGACTCTGAATCCGAATACGAGTCTTCAGAGTCCGAATACGAATCTTCTCCAGATGATGAAGAATCCGAATCGTCATAATCATCCCGCGATCTTCTTCTAGAACTTCGACTTCTCTTTCTGCGGTGTTTTCTCACTTCTCGTTCCGGTTCGGATTCAGATTCATCTTCTCTTTTGGATTTTGATTTGTGTTGCCGCTTCGATGGAGTCGCTCCATTTTCGTCTTCTGAAGCTTTTACTCGCTCTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTCCGGTCTTCTCTTCCTATCTCTCCTCTTTCTACGCCTCCTCTCCTCTTCCGAATCCGAATACTCCGAACTACTACCCGACTCTGAATCCGAATACGAGTCTTCAGAGTCCGAATACGAATCTTCTCCAGATGATGAAGAATCCGAATCGTCATAATCATCCCGCGATCTTCTTCTAGAACTTCGACTTCTCTTTCTGCGGTGTTTTCTCACTTCTCGTTCCGGTTCGGATTCAGATTCATCTTCTCTTTTGGATTTTGATTTGTGTTGCCGCTTCGATGGAGTCGCTCCATTTTCGTCTTCTGAAGCTTTTACCTGGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E542661" ref_strand="+" ref_description="SGN-E542661 [TUS-64-B6]">
      <seq>gagcgagtaaaagcttcagaagacgaaaatggagcgactccatcgaagcggcaacacaaatcaaaatccaaaagagaagatgaatctgaatccgaaccggaacgagaagtgagaaaacaccgcagaaagagaagtcgaagttctagaagaagatcgcgggatgattatgacgattcggattcttcatcatctggagaagattcgtattcggactctgaagactcgtattcggattcagagtcgggtagtagttcggagtattcggattcggaagaggagaggaggcgtagaaagaggagagataggaagagaagagaggaaaaggagagagaagaaagagaggaagaagaaaaagaaagagaaggggaaaactggtgctgttacaaactcttggggaaaatatggaatcatcaaggaaactgatatgtggaacaaacggccagagtttaccgcatggttggcagaaataaagaaggtgaatctggaaagcctgccaaattgggaagagaagcaattgttcaagcaattcatggaggatcataacactgcaaccttcccttctaaaaatattataaccttgacgcctattacagacgtaaaatggaaaaggaaagtagaagaggtgtcaagaaggtcgtggacgatgaacgtactgtcttcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="28268" stop="31154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28568" g_stop="28896" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28897" i_stop="28964" i_length="68">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28965" g_stop="29064" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="429" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29065" i_stop="30014" i_length="950">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30015" g_stop="30060" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="475" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30061" i_stop="30306" i_length="246">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30307" g_stop="30356" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="525" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30357" i_stop="30477" i_length="121">
            <donor d_prob="0.495" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30478" g_stop="30519" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="566" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30520" i_stop="30756" i_length="237">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30757" g_stop="30854" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="664" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E542661" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28568" e_stop="28896"/>
          <exon e_start="28965" e_stop="29064"/>
          <exon e_start="30015" e_stop="30060"/>
          <exon e_start="30307" e_stop="30356"/>
          <exon e_start="30478" e_stop="30519"/>
          <exon e_start="30757" e_stop="30854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAGAGAGAAGAAACGAAAGCTGAGGAAAGAGAAGGAGAAGGAGAAGAAGAAGAGGAGGAAGAAGGAGAAAGAGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTGGTGAGCAACTTTTCATGGCTTTAACTTTTTTAGTGTTTACTTCTTTGGATTATGAATTGAATTAATGCTTGAAATGTTGGTTTGGAGTAGTGATTTGAAGTGTATTAGTAAAGGAAATGACTTCTCTTTTGATAAAAATGTATTCTTTGGCTAATACTTGAAAGACATAACTACTTGATTGTAAGCAAACCACAACAACATACCCGGCATTATGCTTACCTTTTGTATTGGAGCTATCGATATCTTCTGGTTTGTATGTCTTGTTTCTTATGCATCTTCTTGATGCCTTTAAAAGATATAATCTTACTTCATGAAAAAAGGAGACAATGCTGTCTTTACACTCCCCACCCTACACATCTTTGGTTGTGTTAAGATTTATGTTGGCTCCGTTATCTGTCCTTGAGACTGGCTTTGTGAGCAAGCTCACACGGGTGAGTGATTATTCTACAAATTTTAGGCTTTACCCCTTAATGTAACTTGAATGCTCTGAACAATCATTCAATCTATCCTCTGTTCCATTATATAGGTTAGAACATATGATTTCCAGACAGAGCCTTACTTTTGGATCATTTTCTGGCATAATTGTTAAGAGGATGCAGCATTTTGAGTAGTGAGAGACATGCTATTGACTCCTATATTGTCCAGAAAGAAGTCAGTCATATTGCTGTATATGAAGATATACCTTTTTTTTTATATTGTGGTTGGACCATTCATCTGTGTAGATGTACCTTTTATTTATATAAAAGAGAGTGGAAATTTCTGAATTCGTGCATTATTACGGTGATAATATGTTTATGCTTGAACTAATTACGATGGATTCTCGTCACCTTCTTGTGTGTTGCAATTTTATTTCAGAAGGTTGCAGGAAATGTTTCTCTTCACTTTGGTGTCAGTTTTAATGATCAGATTGTTTTTATATAGATTTCAACTTTAGTTATTGCTTATTGTAGGAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAGGTACGTAGTGACTCTTTAAGCTTATGCATGTTGATCATCCACACAGGACTTGTTGCAGGATATGCCAATTGTTTTGATAAATATTTTTGGATAGGTCTTCATTTTCCATTTAGTGCACTATAGTGCATTTCCAAAGGTCCCCATTAAAAAGCTTCCATTGCATAGCACTACATTCTCTTTCTATTCAATTTTGTGTAAGATATTATATCTAGTTGTGGAAGTTCTCATTTCTTATGTCATTTATAGGTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCAGTAAGTAAATCGAGAAGGGATAAGCTTGTTCTTATTAGCACCTGTTCTTTCCCTTTCTCTACCTCTGTTTAAGCAATATATGCAAGGAACTTCCACTTTTTTATAGTCAACTATTGTGCAGATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAAGTAAGGCTACTGCACTATTTCAATCTAAACTTATTTTTCTGGTTGGGATGGGTTTTTTTTTCTATATTGGCAATAAATGTATTGAGTTGGGTGTTTTATGTGAGGCTTCTAGTTCCTTGCAGGATGATATGTGTTTGTACACACATATACACGTAGAGAGATAGGTATACAGATGCTTGATATTTGAGTTATGTTATAATCATCTAACAGTACGTCTGTTATTCTTCATTTTTGCAGATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATG</genome_strand>
        <mrna_strand>GAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAG....................................................................AGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAG......................................................................................................................................................................................................................................................GTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCA.........................................................................................................................ATTCATGGAGGATCATAACACTGCAACCTTCCCTTCT-AAAA.............................................................................................................................................................................................................................................ATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E301621" ref_strand="+" ref_description="SGN-E301621 [cLEW-23-G5]">
      <seq>agcgagtaaaagcttcagaagacgaaaatggagcgactccatcgaagcggcaacacaaatcaaaatccaaaagagaagatgaatctgaatccgaaccggaacgagaagtgagaaaacaccgcagaaagagaagtcgaagttctagaagaagatcgcgggatgattatgacgattcggattcttcatcatctggagaagattcgtattcggactctgaagactcgtattcggattcagagtcgggtagtagttcggagtattcggattcggaagaggagaggaggcgtagaaagaggagagataggaagagaagagaggaaaaggagagagaagaaagagaggaagaagaaaaagaaagagaaggggaaaactggtgctgttacaaactcttggggaaaatatggaatcatcaaggaaactgatatgtggaacaaacggccagagtttaccgcatggttggcagaaataaagaaagtgaatctggaaagcctgccaaattgggaagagaagcaattgttcaagcaattcatggaggatcataacactgcaaccttcccttctaaaaaatattataaccttgacgcctattacagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="28269" stop="31085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28569" g_stop="28896" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28897" i_stop="28964" i_length="68">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28965" g_stop="29064" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="428" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29065" i_stop="30014" i_length="950">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30015" g_stop="30060" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="474" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30061" i_stop="30306" i_length="246">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30307" g_stop="30356" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="524" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30357" i_stop="30477" i_length="121">
            <donor d_prob="0.495" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30478" g_stop="30519" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="566" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30520" i_stop="30756" i_length="237">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30757" g_stop="30785" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="595" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E301621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28569" e_stop="28896"/>
          <exon e_start="28965" e_stop="29064"/>
          <exon e_start="30015" e_stop="30060"/>
          <exon e_start="30307" e_stop="30356"/>
          <exon e_start="30478" e_stop="30519"/>
          <exon e_start="30757" e_stop="30785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAGAGAGAAGAAACGAAAGCTGAGGAAAGAGAAGGAGAAGGAGAAGAAGAAGAGGAGGAAGAAGGAGAAAGAGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTGGTGAGCAACTTTTCATGGCTTTAACTTTTTTAGTGTTTACTTCTTTGGATTATGAATTGAATTAATGCTTGAAATGTTGGTTTGGAGTAGTGATTTGAAGTGTATTAGTAAAGGAAATGACTTCTCTTTTGATAAAAATGTATTCTTTGGCTAATACTTGAAAGACATAACTACTTGATTGTAAGCAAACCACAACAACATACCCGGCATTATGCTTACCTTTTGTATTGGAGCTATCGATATCTTCTGGTTTGTATGTCTTGTTTCTTATGCATCTTCTTGATGCCTTTAAAAGATATAATCTTACTTCATGAAAAAAGGAGACAATGCTGTCTTTACACTCCCCACCCTACACATCTTTGGTTGTGTTAAGATTTATGTTGGCTCCGTTATCTGTCCTTGAGACTGGCTTTGTGAGCAAGCTCACACGGGTGAGTGATTATTCTACAAATTTTAGGCTTTACCCCTTAATGTAACTTGAATGCTCTGAACAATCATTCAATCTATCCTCTGTTCCATTATATAGGTTAGAACATATGATTTCCAGACAGAGCCTTACTTTTGGATCATTTTCTGGCATAATTGTTAAGAGGATGCAGCATTTTGAGTAGTGAGAGACATGCTATTGACTCCTATATTGTCCAGAAAGAAGTCAGTCATATTGCTGTATATGAAGATATACCTTTTTTTTTATATTGTGGTTGGACCATTCATCTGTGTAGATGTACCTTTTATTTATATAAAAGAGAGTGGAAATTTCTGAATTCGTGCATTATTACGGTGATAATATGTTTATGCTTGAACTAATTACGATGGATTCTCGTCACCTTCTTGTGTGTTGCAATTTTATTTCAGAAGGTTGCAGGAAATGTTTCTCTTCACTTTGGTGTCAGTTTTAATGATCAGATTGTTTTTATATAGATTTCAACTTTAGTTATTGCTTATTGTAGGAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAGGTACGTAGTGACTCTTTAAGCTTATGCATGTTGATCATCCACACAGGACTTGTTGCAGGATATGCCAATTGTTTTGATAAATATTTTTGGATAGGTCTTCATTTTCCATTTAGTGCACTATAGTGCATTTCCAAAGGTCCCCATTAAAAAGCTTCCATTGCATAGCACTACATTCTCTTTCTATTCAATTTTGTGTAAGATATTATATCTAGTTGTGGAAGTTCTCATTTCTTATGTCATTTATAGGTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCAGTAAGTAAATCGAGAAGGGATAAGCTTGTTCTTATTAGCACCTGTTCTTTCCCTTTCTCTACCTCTGTTTAAGCAATATATGCAAGGAACTTCCACTTTTTTATAGTCAACTATTGTGCAGATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAAGTAAGGCTACTGCACTATTTCAATCTAAACTTATTTTTCTGGTTGGGATGGGTTTTTTTTTCTATATTGGCAATAAATGTATTGAGTTGGGTGTTTTATGTGAGGCTTCTAGTTCCTTGCAGGATGATATGTGTTTGTACACACATATACACGTAGAGAGATAGGTATACAGATGCTTGATATTTGAGTTATGTTATAATCATCTAACAGTACGTCTGTTATTCTTCATTTTTGCAGATATTATAACCTTGACGCCTATTACAGAC</genome_strand>
        <mrna_strand>AGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAG....................................................................AGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAA......................................................................................................................................................................................................................................................GTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCA.........................................................................................................................ATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAA.............................................................................................................................................................................................................................................ATATTATAACCTTGACGCCTATTACAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E542660" ref_strand="-" ref_description="SGN-E542660 [TUS-64-B6]">
      <seq>ttgggaagagaagcaattttccaagcaattcatggaggatcataacactgcaaccttcccttctaaaaaatattataaccttgacgcctattacagacgtaaaatggaaaaggaaagtagaagaggtgtcaagaaggtcgtggacgatgaacgtactgtcttcgatgatgaagaacagcgcaggcaagaactgatgcgagagcgtgagaagcacaagcaagaacaggtggaaacattgaagcgcgagatgcagagtggaatggcgcaagcaatgaaagaacaagctcaattaagagaagagatggcttatcaatacaagcttggtaactttgaggctgcagctgctattcaaagacgtttggaccctgatctccctatgtagacgaggttctgcaaaattttggtctacgctacaacggattacattagactacatgttttagtttttctgtctccttttcgttgagtaaatatgcttgcagattcatctgcaagtctaagcttattactagatatcactaggctagatgagttgaaatctagttcatgtattgttgtgtaatatcatttgcactcccatctttttattctcttcgatctccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="30030" stop="32338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30330" g_stop="30356" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30357" i_stop="30477" i_length="121">
            <donor d_prob="0.495" d_score="0.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30478" g_stop="30519" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="69" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30520" i_stop="30756" i_length="237">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30757" g_stop="30870" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="183" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30871" i_stop="31444" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31445" g_stop="31523" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="262" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31524" i_stop="31623" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31624" g_stop="31695" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="334" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31696" i_stop="31769" i_length="74">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31770" g_stop="32038" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="603" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="604" polyA_stop="620"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E542660" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542660" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30330" e_stop="30356"/>
          <exon e_start="30478" e_stop="30519"/>
          <exon e_start="30757" e_stop="30870"/>
          <exon e_start="31445" e_stop="31523"/>
          <exon e_start="31624" e_stop="31695"/>
          <exon e_start="31770" e_stop="32038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGAAGAGAAGCAATTGTTCAAGCAGTAAGTAAATCGAGAAGGGATAAGCTTGTTCTTATTAGCACCTGTTCTTTCCCTTTCTCTACCTCTGTTTAAGCAATATATGCAAGGAACTTCCACTTTTTTATAGTCAACTATTGTGCAGATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAAGTAAGGCTACTGCACTATTTCAATCTAAACTTATTTTTCTGGTTGGGATGGGTTTTTTTTTCTATATTGGCAATAAATGTATTGAGTTGGGTGTTTTATGTGAGGCTTCTAGTTCCTTGCAGGATGATATGTGTTTGTACACACATATACACGTAGAGAGATAGGTATACAGATGCTTGATATTTGAGTTATGTTATAATCATCTAACAGTACGTCTGTTATTCTTCATTTTTGCAGATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAGGTAAGTCATGGACACGGTTGCCATTTCATTTGATAAATCGTTTTTTGGTTGAGTAGTATGAAGTCAGCTAAGGGCATGACACAAATTCAAATACTGTTAGAGAACCAAGTTTGGACTTTTGGTTTTTAAATCTAGAAGGATACACCTATTATCCACTGAATTTACGTTTCAAAGCTGGAACATCGGATTTCTTATTTCTTATTTAGAGGAAATAACTTTGAAGTTTCAAATTTCTAATGTGATCTCGTGCTCTTTGGAGCTATTTGAACAGAGCCACTATCCTGCAGTGGTGGTATAGATTATTGCTTTGCCCTAGTTTAATCTTTCAGACCTGAAACCACATTATAATACTCAAAGATGGTGGTATGTATAAAATTTTAGCATCCTGGAAGCTATAGGATCCCACATTAAGCAAGTACTATATAGTTAAACATACAAGAGTATTTTTTTTTTCCTGAAGACAAATCGGCTCCAACTTTTGTCATTGAAAGGGAAAAAAGGGGAGGAGATTTTCATCTTTCCATTAAATTGGCATAGTCTGGTTTTTGAGTCGTTACGTATTCTGTTATTGTAGGCAAGAACTGATGCGAGAGCGTGAGAAGCACAAGCAAGAACAGGTGGAAACATTGAAGCGCGAGATGCAGAGTGGAATGGTATGTATTCTGCTACCTTTGTCCTTTCTCCATACAACAGGTGAAAAGTATATAATGTGACGAACTCCTCTCTTTTTGTTTGTAAATTTGAATCTCTAAGGCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAGGTGAGAATGAGCCTTATCATGATACACTATTTTCTTTTTCCGCTCATTGATCTTATTTTCCGATGTCCTGATAGGCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTTCTGCAAAATTTTGGTCTACGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTTCTGTCTCCTTTTCGTTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTAAGCTTATTACTAGATATCACTAGGCTAGATGAGTTGAAATCTAGTTCATGTATTGTTGTGTAATATCATTTGCACTCCCATCTTTTTATTCTCTTCGATCTCCA</genome_strand>
        <mrna_strand>TTGGGAAGAGAAGCAATTTTCCAAGCA.........................................................................................................................ATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAA.............................................................................................................................................................................................................................................ATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAACTGATGCGAGAGCGTGAGAAGCACAAGCAAGAACAGGTGGAAACATTGAAGCGCGAGATGCAGAGTGGAATG....................................................................................................GCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAG..........................................................................GCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTTCTGCAAAATTTTGGTCTACGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTTCTGTCTCCTTTTCGTTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTAAGCTTATTACTAGATATCACTAGGCTAGATGAGTTGAAATCTAGTTCATGTATTGTTGTGTAATATCATTTGCACTCCCATCTTTTTATTCTCTTCGATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E542371" ref_strand="+" ref_description="SGN-E542371 [TUS-63-K9]">
      <seq>ttttctttattacggaaacttattttaattcagtggaaattcacaatataacacatgcaattaattgttatcaagcatatatacaaacaacaaaaatataactaaaaaaacagaaaagttcactcttacattcttccattaagtccgtcgtctccgagctctcttcattgaccttctcattttcttgggataaatgccttcaaaaaattcgacaaaccattctggcttacggtatttaaacacgaggctccacacaacagttccaacaactagtccaaagctgtagcctatgactactgattcccacgtaaatccactaaaaaaatatgactcgtcttcagactccaatggttgaggaacatgggatgaatcactcgttccacattgctttgacaaaggaggaccacatagatcaaggttaccgccatacgagtcattttcaaatgtgttgaattgtagaccttgaggaatcgatccaataagaagattctgagagaggtttaagactgctagaaacttcattgttatcaattcccttggaatctttcctgtgagccgattccaggagagatataacgcttcaagcttattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="40396" stop="41575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40697" g_stop="41275" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="593" r_length="578" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E542371" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40697" e_stop="41275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTTATTTTAATCCAGTGGAAATTCACAAAATAACACATGCAATTATATTGTTATCAAGCATATATACAAACAACAAAAAGATAACTAAAAAAACAGAAAAGTTCACTCTTGCATTCTTCCATTAAGTGCGTCGTCTCTGAGCTCTCTTCATTGACCTTCTCATTTTCTTGGGATAAATGCCTTCAAAAAATTCAACAAACCATTTTGGCTTACGGTATTTAAACACGAGGATCCACACAACAGTTCCAACAACTAGTCCAAAGCTGTAGCCTATGACTACTGATTCCCACGTAAATCCACTAAAAAAATATGACTCGCCTTCATATTCCAATGGTTGAGGAACATGGGATGGATCAGTCGTTCCACATTGCTTTGATAAAGGAGGACCACATAGATCAAGGTTTCCACCATACGAGTCATTTTCAAATGTGTTGAATTGTAGACCTTGA-GAATCGATCCAATAAGAAGATTCTGAGAGAGGTTTAAGACTGCTAGAAACTTCATTGTTATCAATTTCTTTGGAATCTTTCCGGTGAGACGATTCCAGGAGAGATCTAACGCTTCAAGCTTATTCA</genome_strand>
        <mrna_strand>AA-ACTTATTTTAATTCAGTGGAAATTCACAATATAACACATGCAATTA-ATTGTTATCAAGCATATATACAAACAACAAAAATATAACTAAAAAAACAGAAAAGTTCACTCTTACATTCTTCCATTAAGTCCGTCGTCTCCGAGCTCTCTTCATTGACCTTCTCATTTTCTTGGGATAAATGCCTTCAAAAAATTCGACAAACCATTCTGGCTTACGGTATTTAAACACGAGGCTCCACACAACAGTTCCAACAACTAGTCCAAAGCTGTAGCCTATGACTACTGATTCCCACGTAAATCCACTAAAAAAATATGACTCGTCTTCAGACTCCAATGGTTGAGGAACATGGGATGAATCACTCGTTCCACATTGCTTTGACAAAGGAGGACCACATAGATCAAGGTTACCGCCATACGAGTCATTTTCAAATGTGTTGAATTGTAGACCTTGAGGAATCGATCCAATAAGAAGATTCTGAGAGAGGTTTAAGACTGCTAGAAACTTCATTGTTATCAATTCCCTTGGAATCTTTCCTGTGAGCCGATTCCAGGAGAGATATAACGCTTCAAGCTTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E542364" ref_strand="-" ref_description="SGN-E542364 [TUS-63-K5]">
      <seq>tcattgtacagatcgtatgaggattctgtgagtttggtgatcaaagnccaggacattgagctagaaagaatcagcacaattatgacaaccatagacctctcgagcaaccattttgaaggtgtcattccaaaaacactaaaggatctcagctcactttggctactcaatttatcccataacaatctcatcggtcatattccaatggaattggggcaattgaataagcttgaagcgttatatctctcctggaatcggctcacaggaaagattccaagggaattgataacaatgaagtttctagcagtcttaaacctctctcagaatcttcttattggatcgattcctcaaggtctacaattcaacacatttgaaaatgactcgtatggcggtaaccttgatctatgtggtcctcctttgtcaaagcaatgtggaacgagtgattcatcccatgttcctcaaccattggagtctgaagacgagtcatatttttttagtggatttacgtgggaatcagtagtcataggctacagctttggactagttgttggaactgttgtgtggagcctcgtgtttaaataccgtaagccagaatggtttgtcgaattttttgaaggcatttatcccaagaaaatgagaaggtcaatgaagagagctcggagacgacggacttaatggaagaatgtaagagtgaacttttctgtttttttagttatatttttgttgtttgtatatatgcttgataacaattaattgcatgtgttatattgtgaatttccactgaattaaaataagtgttcttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41792" stop="40392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41492" g_stop="40702" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="801" polyA_stop="812"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E542364" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542364" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41492" e_stop="40702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGTACACATCCTACAAGGATTCTGTGAGTTTGGTGATCAAAGGCCAGGACATTGAGCTAGAAAGAATCAGCACAATTATGACAACCATAGACCTCTCGAGCAACCATTTTGAAGGTGTCATTCCAAAAACACTAAAGGATCTCAGCTCACTTTGGCTACTCAATTTATCCCATAACAATCTCATAGGTCACATTCCAATGGAATTGAGGCAATTGAATAAGCTTGAAGCGTTAGATCTCTCCTGGAATCGTCTCACCGGAAAGATTCCAAAGAAATTGATAACAATGAAGTTTCTAGCAGTCTTAAACCTCTCTCAGAATCTTCTTATTGGATCGATT-CTCAAGGTCTACAATTCAACACATTTGAAAATGACTCGTATGGTGGAAACCTTGATCTATGTGGTCCTCCTTTATCAAAGCAATGTGGAACGACTGATCCATCCCATGTTCCTCAACCATTGGAATATGAAGGCGAGTCATATTTTTTTAGTGGATTTACGTGGGAATCAGTAGTCATAGGCTACAGCTTTGGACTAGTTGTTGGAACTGTTGTGTGGATCCTCGTGTTTAAATACCGTAAGCCAAAATGGTTTGTTGAATTTTTTGAAGGCATTTATCCCAAGAAAATGAGAAGGTCAATGAAGAGAGCTCAGAGACGACGCACTTAATGGAAGAATGCAAGAGTGAACTTTTCTGTTTTTTTAGTTATCTTTTTGTTGTTTGTATATATGCTTGATAACAATATAATTGCATGTGTTATTTTGTGAATTTCCACTGGATTAAAATAA</genome_strand>
        <mrna_strand>TCATTGTACAGATCGTATGAGGATTCTGTGAGTTTGGTGATCAAAGNCCAGGACATTGAGCTAGAAAGAATCAGCACAATTATGACAACCATAGACCTCTCGAGCAACCATTTTGAAGGTGTCATTCCAAAAACACTAAAGGATCTCAGCTCACTTTGGCTACTCAATTTATCCCATAACAATCTCATCGGTCATATTCCAATGGAATTGGGGCAATTGAATAAGCTTGAAGCGTTATATCTCTCCTGGAATCGGCTCACAGGAAAGATTCCAAGGGAATTGATAACAATGAAGTTTCTAGCAGTCTTAAACCTCTCTCAGAATCTTCTTATTGGATCGATTCCTCAAGGTCTACAATTCAACACATTTGAAAATGACTCGTATGGCGGTAACCTTGATCTATGTGGTCCTCCTTTGTCAAAGCAATGTGGAACGAGTGATTCATCCCATGTTCCTCAACCATTGGAGTCTGAAGACGAGTCATATTTTTTTAGTGGATTTACGTGGGAATCAGTAGTCATAGGCTACAGCTTTGGACTAGTTGTTGGAACTGTTGTGTGGAGCCTCGTGTTTAAATACCGTAAGCCAGAATGGTTTGTCGAATTTTTTGAAGGCATTTATCCCAAGAAAATGAGAAGGTCAATGAAGAGAGCTCGGAGACGACGGACTTAATGGAAGAATGTAAGAGTGAACTTTTCTGTTTTTTTAGTTATATTTTTGTTGTTTGTATATATGCTTGATAACAAT-TAATTGCATGTGTTATATTGTGAATTTCCACTGAATTAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13]">
      <seq>atttttcagagagagtttttcagcagctaaaagagagaaaaaagagagaaattcgcagtcaaaaatccagccataacaaccaacttcaaattgcgattcccgcttcgtttcttgtccgattgagctgatttttggacagcatattatcttcatctcaatctttgattaggaactgacagagttggatttggtggtctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgattttgctcctttaattctctagatttggagcaatcttattttgttgttgctcgttgtttgacactttgttttgtggccaattttggagaacaatattgtaactcttggtgattatagtggagcttttggacccgtggttttttactcttcacatcgaaggggtttccacgtaaatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47047" stop="48018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47306" g_stop="47718" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="425" r_length="413" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47306" e_stop="47718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTTTTCAGCAGCCAAAAAGAGAGAAAAAGAGCAGTTTTTCGCAGTC-AAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGTATATTATATTCATCTCAATCTTTGATTAGAAACTGACAGAGTTGGATTTGGTGGCCTGAAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCAC-TTGTTTTATGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTTATTATAGTGGAGCTTTTGGTCCTGTGATTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTG</genome_strand>
        <mrna_strand>GAG-TTTTTCAGCAG-CTAAAAGAGAGAAAAAAGAGAGAAATTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGTCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGAGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGACCCGTGGTTTTTTACTCTTCACATCGAAGGGGTTTCCACGTAAATCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E725756" ref_strand="+" ref_description="SGN-E725756 [LA05CD03]">
      <seq>caaattcttactacacacactatcagtccaaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgatagagcagcaaaatcagcagggatgcctaangagaattatacccatatgcatttagaccttgcatcgcttgacagcgtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59351" stop="61338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59651" g_stop="59801" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="247" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61038" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="546" r_length="299" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E725756" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59651" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTTACTACACACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAG</genome_strand>
        <mrna_strand>CAAATTCTTACTACACACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGATAGAGCAGCAAAATCAGCAGGGATGCCTAANGAGAATTATACCCATATGCATTTAGACCTTGCATCGCTTGACAGCGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E745474" ref_strand="+" ref_description="SGN-E745474 [GI|47105604]">
      <seq>gacacactatcagtccaaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctccctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcatttccttctttcgagattgttgattgatgatttgaagcagtctgattacccttcaaagagactcatcattgttggttcgattacaggaaacacaaacacattggctggaaatgtacctccaaaggccaacctcggggacttgaggggtttagcaagggggctcgatggacttaacagctcagccatgattgacggtggtgactttgatggtgccaaagcttacaaagacagcaaggtttgcaatatgctcactatgcaggaattccatagacgataccacgaagagactggcatcacatttgcctccctataccctggctgcatcgcgacaacagggctattcagggagcatatccccttgtttaggctccttttccctccattccagaagtttatcaccaaaggattcgtctccgaggcagaatctggaaagagacttgcacaggttgttagtgatccaagtcttacaaaatcaggtgtgtactggagctggaacaagaactcttcctcctttgagaaccagttgtcagaagaagctagtgacgttgagaaagcgcgtaaagtgtgggaagtcagtgagaaactcgtgggattggcttagattttttgctgattgagttcaaccatcaccaagacgaacacgaaaaaggagttgatgaaggagaatttgaatcgagtctgttttgttgtagttaaaaagttgtcacttcgtaaaatttttgagttaggaataaatatcattcatccttttagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59365" stop="62677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59664" g_stop="59801" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="234" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61268" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="763" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61269" i_stop="61368" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61369" g_stop="61727" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="1122" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61728" i_stop="62067" i_length="340">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62068" g_stop="62376" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1123" r_stop="1431" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1432" polyA_stop="1446"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E745474" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1431</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59664" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61268"/>
          <exon e_start="61369" e_stop="61727"/>
          <exon e_start="62068" e_stop="62376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAGGTAACAGTCAGACCTCTTTATAACAACATCGTTTGTCTAGATAGTTTTGATACTCATTTTAGTGGGAGACTAATCGTTGTTACTGAAAATCAAATATCAGGAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAGGTAATATTTATTAGTGTCAGTTTCACGTATAACCACTGAACTTTATCCACTATAACAGTAACCGTAAAGATAAGATACCTGGCCTAACTCAATCTCAAAAGTTAGCTCGTGAGGAGAGGATTGCTCGAGTCTATATTAGGAGAGCACCAATCCATTCATCAACCAATGTGAGACTTTTATTCACTCTAACACTCCCCTTCACGCCCATGCCCAACTGAAGCGTAGACTGGGAGCCCAAAGAGGGATACCATGTAAAGATGATTTTAGGCCTAACCAAGAAACTAATTTTTGTCACACTAAAGTTACTAAACATAAGATGTTGTTTGTTTGTTATTTACAGGTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAGA</genome_strand>
        <mrna_strand>GACACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCCCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAG....................................................................................................GAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAG....................................................................................................................................................................................................................................................................................................................................................GTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E747194" ref_strand="+" ref_description="SGN-E747194 [GI|9049761]">
      <seq>cgcggggacactatcagtccaaaaatcattttttaaaatctccatcttacaattttttcaaacaaaaatcattttcctaatataatcatggcccttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacaggaaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcatttccttctttcgagattgttgattgatgatttgaagcagtctgattacccttcaaagagactcatcattgttggttcgattacaggaaacacaaacacattggctggaaatgtacctccaaaggccaacctcggggacttgaggggtttagcaagggggctcgatggacttaacagctcagccatgattgacggtggtgactttgatggtgccaaagcttacgaagacagcaaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59367" stop="61820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59667" g_stop="59801" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="141" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="237" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61268" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="766" r_length="529" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61269" i_stop="61368" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61369" g_stop="61512" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="910" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E747194" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59667" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61268"/>
          <exon e_start="61369" e_stop="61512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAGGTAACAGTCAGACCTCTTTATAACAACATCGTTTGTCTAGATAGTTTTGATACTCATTTTAGTGGGAGACTAATCGTTGTTACTGAAAATCAAATATCAGGAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACA</genome_strand>
        <mrna_strand>ACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTC-AAACAAAAATCATTTTCCTAATATAATCATGGCCCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGAAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAG....................................................................................................GAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACGAAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E718155" ref_strand="+" ref_description="SGN-E718155 [FC03DE01]">
      <seq>cccatggggatccgatacactatcagtccaaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcatttccttctttcgagattgttgattgatgatttgaagcagtctgattacccttcaaagagactcatcattgttggttcgattacaggaaacacaaacacattggctggaaatgtacctccaaaggccaacctccgggacttgaggggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59362" stop="61732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59667" g_stop="59801" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="151" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="247" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61268" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="776" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61269" i_stop="61368" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61369" g_stop="61432" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="840" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E718155" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59667" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61268"/>
          <exon e_start="61369" e_stop="61432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAGGTAACAGTCAGACCTCTTTATAACAACATCGTTTGTCTAGATAGTTTTGATACTCATTTTAGTGGGAGACTAATCGTTGTTACTGAAAATCAAATATCAGGAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTT</genome_strand>
        <mrna_strand>ACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAG....................................................................................................GAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCCGGGACTTGAGGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E320285" ref_strand="+" ref_description="SGN-E320285 [cTOB-21-N7]">
      <seq>tccaaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattacagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagagaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtacagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaagagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcatttccttctttcgagattgttgattgatgatttgaagcagtctgattacccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59377" stop="61537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59677" g_stop="59801" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="221" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61237" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="719" r_length="498" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E320285" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59677" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCA</genome_strand>
        <mrna_strand>TCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTACAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAGAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTACAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAAGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E740113" ref_strand="+" ref_description="SGN-E740113 [LC20AF03]">
      <seq>caaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcatttccttctttcgagattgttgattgatgatttgaagcagtctgattacccttcaaagagactcatcattgttggttcgattacaggaaacacaaacacattggctggaaatgtacctccaaaggccaacctcggggacttgaggggtttagcaagggggctcgatggacttaacagctcagccatgattgacggtggtgactttgatggtgccaagcttacaaagacagcaggtttgcaatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59379" stop="61831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59679" g_stop="59801" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="219" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61268" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="748" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61269" i_stop="61368" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61369" g_stop="61531" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="909" r_length="161" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E740113" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59679" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61268"/>
          <exon e_start="61369" e_stop="61531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAGGTAACAGTCAGACCTCTTTATAACAACATCGTTTGTCTAGATAGTTTTGATACTCATTTTAGTGGGAGACTAATCGTTGTTACTGAAAATCAAATATCAGGAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCT</genome_strand>
        <mrna_strand>CAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAG....................................................................................................GAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCC-AAGCTTACAAAGACAGC-AGGTTTGCAATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E319156" ref_strand="+" ref_description="SGN-E319156 [cTOB-16-E4]">
      <seq>caaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59379" stop="61355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59679" g_stop="59801" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="219" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61055" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="535" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E319156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59679" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACT</genome_strand>
        <mrna_strand>CAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E314273" ref_strand="+" ref_description="SGN-E314273 [cTOA-21-P2]">
      <seq>caaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcnaaatcagcaggnatgccctaagagaattatacaataatgcatttagaccttgcatcgcttgacagcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59379" stop="61336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59679" g_stop="59801" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="219" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61036" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="516" r_length="297" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E314273" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59679" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTC</genome_strand>
        <mrna_strand>CAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCNAAATCAGCAGGNATGCCCTAAGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E313556" ref_strand="+" ref_description="SGN-E313556 [cTOA-12-B5]">
      <seq>caaaaatcattttttaaaatctccatcttacaattggggcaaatcaaaaatcattgtcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggatgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgcgtagtaatcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59379" stop="61160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59679" g_stop="59801" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="219" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="60860" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="340" r_length="121" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E313556" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59679" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="60860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTG</genome_strand>
        <mrna_strand>CAAAAATCATTTTTTAAAATCTCCATCTTACAATTGGGGCAAATCAAAAATCATTGTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGATGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGCGTAGTAATCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E738407" ref_strand="+" ref_description="SGN-E738407 [LC13CB01]">
      <seq>caatatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcatttccttctttcgagattgttgattgatgatttgaagcagtctgattacccttcaaagagactcatcattgttggttcgattacaggaaacacaaacacattggctggaaatgtacctccaaaggccaacctcggggacttgaggggtttagcaagggggctcgatggacttaacagctcagccatgattgacggtggtgactttgatgggtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59381" stop="61796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59680" g_stop="59801" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="218" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61268" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="747" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61269" i_stop="61368" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61369" g_stop="61496" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="876" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E738407" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59680" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61268"/>
          <exon e_start="61369" e_stop="61496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAGGTAACAGTCAGACCTCTTTATAACAACATCGTTTGTCTAGATAGTTTTGATACTCATTTTAGTGGGAGACTAATCGTTGTTACTGAAAATCAAATATCAGGAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGAT-GGTGCC</genome_strand>
        <mrna_strand>CAATATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAG....................................................................................................GAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E316761" ref_strand="+" ref_description="SGN-E316761 [cTOB-6-A19]">
      <seq>aaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaagtcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59380" stop="61483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59680" g_stop="59801" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="218" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61183" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="662" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E316761" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59680" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCAT</genome_strand>
        <mrna_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAGTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E265763" ref_strand="+" ref_description="SGN-E265763 [cLEI-11-F19]">
      <seq>aaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctccattccaaaggaggggaaaactagtgcatctttgaaagattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaagagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59380" stop="61409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59680" g_stop="59801" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="218" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61109" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="588" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E265763" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59680" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATC</genome_strand>
        <mrna_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCCATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAAGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAAGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E295538" ref_strand="+" ref_description="SGN-E295538 [cLET-23-H9]">
      <seq>aaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaagcaatcctcttgatgtattggtttgcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59380" stop="61398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59680" g_stop="59801" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="218" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61098" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="577" r_length="359" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E295538" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59680" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGC</genome_strand>
        <mrna_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAAGCAATCCTCTTGATGTATTGGTTTGCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E266161" ref_strand="+" ref_description="SGN-E266161 [cLEI-6-N12]">
      <seq>aaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59380" stop="61337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59680" g_stop="59801" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="218" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61037" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="516" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E266161" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59680" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCA</genome_strand>
        <mrna_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E312059" ref_strand="+" ref_description="SGN-E312059 [cTOA-11-M1]">
      <seq>aaaaatcattttttaaaatctccatcttacaatttttgcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctgttccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatgtctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtatagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59380" stop="61317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59680" g_stop="59801" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="218" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61017" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="496" r_length="278" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E312059" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59680" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCT</genome_strand>
        <mrna_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTGCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTGTTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATGTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTATAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E265975" ref_strand="+" ref_description="SGN-E265975 [cLEI-6-F13]">
      <seq>aaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59380" stop="61284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59680" g_stop="59801" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="218" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="60984" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="463" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E265975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59680" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="60984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCC</genome_strand>
        <mrna_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E738327" ref_strand="+" ref_description="SGN-E738327 [LC13BA10]">
      <seq>catatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcatttccttctttcgagattgttgattgatgatttgaagcagtctgattacccttcaaagagactcatcattgttggttcgattacaggaaacacaaacacattggctggaaatgtacctccaaaggccaacctcggggacttgaggggtttagcaagggggctcgatggacttaacagctcacccatgattgacggtggtgactttgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59382" stop="61792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59681" g_stop="59801" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="217" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61268" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="746" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61269" i_stop="61368" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61369" g_stop="61492" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="870" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E738327" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59681" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61268"/>
          <exon e_start="61369" e_stop="61492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAGGTAACAGTCAGACCTCTTTATAACAACATCGTTTGTCTAGATAGTTTTGATACTCATTTTAGTGGGAGACTAATCGTTGTTACTGAAAATCAAATATCAGGAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGG</genome_strand>
        <mrna_strand>CATATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAG....................................................................................................GAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCACCCATGATTGACGGTGGTGACTTTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E346851" ref_strand="+" ref_description="SGN-E346851 [cTOF-32-A11]">
      <seq>aaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcatttccttctttcgagattgttgattgatgatttgaagcagtctgattacccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59381" stop="61536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59681" g_stop="59801" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="217" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61236" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="714" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E346851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59681" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTC</genome_strand>
        <mrna_strand>AAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E319867" ref_strand="+" ref_description="SGN-E319867 [cTOB-12-G7]">
      <seq>aaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59381" stop="61338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59681" g_stop="59801" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="217" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61038" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="516" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E319867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59681" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAG</genome_strand>
        <mrna_strand>AAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E268994" ref_strand="+" ref_description="SGN-E268994 [cLEI-16-G4]">
      <seq>aatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaagagatcaggcaatcctcttgatgtattggtttgcaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59383" stop="61398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59683" g_stop="59801" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="215" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61098" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="574" r_length="359" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E268994" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59683" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGC</genome_strand>
        <mrna_strand>AATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAAGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E265614" ref_strand="+" ref_description="SGN-E265614 [cLEI-14-O10]">
      <seq>aatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59383" stop="61355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59683" g_stop="59801" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="215" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61055" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="531" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E265614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59683" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACT</genome_strand>
        <mrna_strand>AATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E697283" ref_strand="+" ref_description="SGN-E697283 [FA02AD04]">
      <seq>ccattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcatttccttctttcgagattgttgattgatgatttgaagcagtctgattacccttcaaagagactcatcattgttggttcgattacaggaaacacaaacaccattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59386" stop="61686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59685" g_stop="59801" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="213" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61268" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="742" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61269" i_stop="61368" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61369" g_stop="61386" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="761" r_length="19" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E697283" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59685" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61268"/>
          <exon e_start="61369" e_stop="61386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAGGTAACAGTCAGACCTCTTTATAACAACATCGTTTGTCTAGATAGTTTTGATACTCATTTTAGTGGGAGACTAATCGTTGTTACTGAAAATCAAATATCAGGAAACACAAACA-CATTGG</genome_strand>
        <mrna_strand>CCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAG....................................................................................................GAAACACAAACACCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E326903" ref_strand="+" ref_description="SGN-E326903 [cTOC-18-A8]">
      <seq>tcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggatgtgtagtaatcactggagcgtcttcaagactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59385" stop="61330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59685" g_stop="59801" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="213" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61030" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="504" r_length="291" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E326903" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59685" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGAC</genome_strand>
        <mrna_strand>TCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGATGTGTAGTAATCACTGGAGCGTCTTCAAGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E729260" ref_strand="+" ref_description="SGN-E729260 [LA20CA07]">
      <seq>cattttttaaaatctccatncttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaacattaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcatttccttctttcgagattgttgattgatgatttgaagcagtctgattacccttcaaagagactcatcattgttggttcgattacaggaaacacaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59386" stop="61681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59686" g_stop="59801" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="213" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61268" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="742" r_length="529" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61269" i_stop="61368" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61369" g_stop="61381" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="755" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E729260" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59686" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61268"/>
          <exon e_start="61369" e_stop="61381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTTAAAATCTCCAT-CTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAGGTAACAGTCAGACCTCTTTATAACAACATCGTTTGTCTAGATAGTTTTGATACTCATTTTAGTGGGAGACTAATCGTTGTTACTGAAAATCAAATATCAGGAAACACAAACAC</genome_strand>
        <mrna_strand>CATTTTTTAAAATCTCCATNCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACATTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAG....................................................................................................GAAACACAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E321117" ref_strand="+" ref_description="SGN-E321117 [cTOB-13-E10]">
      <seq>cattttttaaaatgtgcatcttacaattttgttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacacgaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtgattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaatgatgcatttaaaccttgcatcgcttgacagcgtcagacaatttgtccataactttaggagatcaggcaatcctcttgatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59386" stop="61385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59686" g_stop="59801" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="213" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61085" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="559" r_length="346" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E321117" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59686" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTTAAAATCTCCATCTTACAATTTT-TTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTAT</genome_strand>
        <mrna_strand>CATTTTTTAAAATGTGCATCTTACAATTTTGTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACACGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTGATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATGATGCATTTAAACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCCATAACTTTAGGAGATCAGGCAATCCTCTTGATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E333683" ref_strand="+" ref_description="SGN-E333683 [cTOD-22-A9]">
      <seq>ttttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcatttccttctttcgagaatgntgattgatgatttgaagcagtctgattaccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59388" stop="61535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59688" g_stop="59801" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="210" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61235" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="706" r_length="496" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E333683" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59688" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTT</genome_strand>
        <mrna_strand>TTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGAATGNTGATTGATGATTTGAAGCAGTCTGATTACCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E321508" ref_strand="+" ref_description="SGN-E321508 [cTOB-23-D18]">
      <seq>ttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcatttccttctttcgagaattgtgattgatgatttgaagcagtctgattacccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59390" stop="61537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59690" g_stop="59801" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="208" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61237" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="706" r_length="498" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E321508" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59690" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCA</genome_strand>
        <mrna_strand>TTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGAATTGTGATTGATGATTTGAAGCAGTCTGATTACCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E268527" ref_strand="+" ref_description="SGN-E268527 [cLEI-13-E22]">
      <seq>ttttaaaatctccatcttacaattttttcaaaacagagatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59390" stop="61237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59690" g_stop="59801" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="208" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="60937" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="406" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E268527" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59690" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="60937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGT</genome_strand>
        <mrna_strand>TTTTAAAATCTCCATCTTACAATTTTTTCAAAACAGAGATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E266300" ref_strand="+" ref_description="SGN-E266300 [cLEI-3-F16]">
      <seq>tttaaaatctccatcttacaattttttcaaaacaaagaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctgccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtacagactctcttaaagctgaaagagcagcaaaatcagcagggatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59391" stop="61284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59691" g_stop="59801" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="208" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="60984" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="453" r_length="245" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E266300" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59691" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="60984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAATCTCCATCTTACAATTTTTTCAAAACAAA-AATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCC</genome_strand>
        <mrna_strand>TTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAGAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTGCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTACAGACTCTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E320526" ref_strand="+" ref_description="SGN-E320526 [cTOB-22-M21]">
      <seq>tttaaaatctccatcttancaattttttcaaaanncaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59391" stop="60504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59691" g_stop="59801" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60204" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="174" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E320526" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59691" e_stop="59801"/>
          <exon e_start="60145" e_stop="60204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAATCTCCATCTTA-CAATTTTTTCAAAA--CAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCAT</genome_strand>
        <mrna_strand>TTTAAAATCTCCATCTTANCAATTTTTTCAAAANNCAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E268154" ref_strand="+" ref_description="SGN-E268154 [cLEI-15-M22]">
      <seq>ttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59392" stop="61402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59692" g_stop="59801" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="206" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61102" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="569" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E268154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59692" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCT</genome_strand>
        <mrna_strand>TTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E279611" ref_strand="+" ref_description="SGN-E279611 [cLER-5-C13]">
      <seq>ttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59392" stop="61355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59692" g_stop="59801" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="206" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61055" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="522" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E279611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59692" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACT</genome_strand>
        <mrna_strand>TTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E319157" ref_strand="+" ref_description="SGN-E319157 [cTOB-16-E16]">
      <seq>aaaatctccatcttacaatgttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagcgcctctttgaaggattcgagtctctttggaatatctctctctgaccatgttaaatctgattctggctcttcattcaaaatcacgagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgcaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtcatcactggagcgtcttcaggactaggactagctacatgcaaaagctctggctgagacagggaaatggcatgtcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59394" stop="61229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59694" g_stop="59801" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="204" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="60929" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="395" r_length="191" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E319157" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59694" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="60929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACA-GCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTA</genome_strand>
        <mrna_strand>AAAATCTCCATCTTACAATGTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGCGCCTCTTTGAAGGATTCGAGTCTCTTTGGAATATCTCTCTCTGACCATGTTAAATCTGATTCTGGCTCTTCATTCAAAATCACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGCAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTCATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACATGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E266467" ref_strand="+" ref_description="SGN-E266467 [cLEI-3-P4]">
      <seq>atctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59397" stop="61402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59697" g_stop="59801" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="201" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61102" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="564" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E266467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59697" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCT</genome_strand>
        <mrna_strand>ATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E265612" ref_strand="+" ref_description="SGN-E265612 [cLEI-14-M14]">
      <seq>atctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactntcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59397" stop="61321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59697" g_stop="59801" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="201" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61021" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="483" r_length="282" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E265612" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59697" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCA</genome_strand>
        <mrna_strand>ATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTNTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E729106" ref_strand="+" ref_description="SGN-E729106 [LA20AA08]">
      <seq>atcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttaatgttgggactaaccatcttggtcatttccttctttcgagattgttgattgatgatttgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59403" stop="61520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59703" g_stop="59801" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="195" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61220" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="676" r_length="481" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E729106" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59703" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGC</genome_strand>
        <mrna_strand>ATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAATGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E342543" ref_strand="+" ref_description="SGN-E342543 [cTOF-8-P10]">
      <seq>ttttttcaaaacaaaaaatccttttcctacacaatcactggctcttcaagcctgctgcattgcttccttctactttctctcttccaaaggaggggaaaactagtgcatctttgaaggcttcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagcctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaagagatccngcaatcctcttgatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59412" stop="61385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59712" g_stop="59801" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="188" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61085" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="535" r_length="347" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E342543" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59712" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCAAAACAAAAA-TCATTTTCCTAATATAATCA-TGGCTCTTCAAG-CTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAG-CTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTAT</genome_strand>
        <mrna_strand>TTTTTTCAAAACAAAAAATCCTTTTCCT-ACACAATCACTGGCTCTTCAAGCCTGCTGCATTGCTTCCTTCTACTTTCTCTCTTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGCTTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAAGAGATCCNGCAATCCTCTTGATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E718416" ref_strand="+" ref_description="SGN-E718416 [FC04CD08]">
      <seq>aagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaaaaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgaaacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagactatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttactgttgggactaaccatcttggtcatttccttctttcgagatcgttgattgatgatttgaagcagtctgattacccttcaaagagactcatcattgttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59458" stop="61558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59758" g_stop="59801" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="140" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61258" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="659" r_length="519" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E718416" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59758" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGT</genome_strand>
        <mrna_strand>AAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAAAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAAACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACTATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTACTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATCGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E317701" ref_strand="+" ref_description="SGN-E317701 [cTOB-8-B15]">
      <seq>tctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgagtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59841" stop="61276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="111" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60740" g_stop="60976" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="348" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E317701" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="60976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCA</genome_strand>
        <mrna_strand>GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGAGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E265498" ref_strand="+" ref_description="SGN-E265498 [cLEI-14-E24]">
      <seq>tgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59856" stop="61428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60156" g_stop="60240" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60740" g_stop="61128" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="474" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E265498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60156" e_stop="60240"/>
          <exon e_start="60740" e_stop="61128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCC</genome_strand>
        <mrna_strand>TGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E265496" ref_strand="+" ref_description="SGN-E265496 [cLEI-14-E20]">
      <seq>tgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggagtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactatcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59856" stop="61346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60156" g_stop="60240" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60740" g_stop="61046" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="392" r_length="307" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E265496" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60156" e_stop="60240"/>
          <exon e_start="60740" e_stop="61046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTG</genome_strand>
        <mrna_strand>TGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGAGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTATCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E268053" ref_strand="+" ref_description="SGN-E268053 [cLEI-15-B2]">
      <seq>tttgaaggattcgagtctctttggaatttctctctgtgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagcccagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactaactacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactatcttaaagctgaaagagcagcaaagtcatcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgattgacagcgtgagacaatttgtcgataactttatgagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59862" stop="61411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60162" g_stop="60240" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60740" g_stop="61111" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="451" r_length="372" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E268053" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60162" e_stop="60240"/>
          <exon e_start="60740" e_stop="61111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAG</genome_strand>
        <mrna_strand>TTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTGTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCCAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAACTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTATCTTAAAGCTGAAAGAGCAGCAAAGTCATCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGATTGACAGCGTGAGACAATTTGTCGATAACTTTATGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E265765" ref_strand="+" ref_description="SGN-E265765 [cLEI-11-H17]">
      <seq>tctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcatgactacgactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttatgagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59892" stop="61409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60192" g_stop="60240" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60740" g_stop="61109" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="419" r_length="370" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E265765" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60192" e_stop="60240"/>
          <exon e_start="60740" e_stop="61109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATC</genome_strand>
        <mrna_strand>TCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCATGACTACGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTATGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E268051" ref_strand="+" ref_description="SGN-E268051 [cLEI-15-P17]">
      <seq>gagattgttgattgatgatttgaagcagtctgattacccttcaaagagactcatcattgttggttcgattacaggaaacacaaacacattggctggaaatgtacctccaaaggccaacctcggggacttgaggggtttagcaagggggctcgatggacttaacagctcaaccatgactgacggtggtgactttgatggtgccaaagcttacaaagacagcaaggtttgcaatatgctcactatgcaggaattccatagacgataccacgaagagactggcatcacatttgcctccctataccctggctgcatctcgacaacatggctattcatggagcatatccccttgtttaggctccttttccctccattccagaagtttatcaccaaatgattcgtctccgatgcagaatctggaaagagacttgcacaggttgttagtgatccaagtcttacaaaatcaagtgtgtactggagctggaacaagaactcttcctcctttgagaaccagttgtcagaagaagctagtgacgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="60895" stop="62471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61195" g_stop="61268" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61269" i_stop="61368" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61369" g_stop="61727" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="433" r_length="359" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61728" i_stop="62067" i_length="340">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62068" g_stop="62171" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="537" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E268051" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61195" e_stop="61268"/>
          <exon e_start="61369" e_stop="61727"/>
          <exon e_start="62068" e_stop="62171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAGGTAACAGTCAGACCTCTTTATAACAACATCGTTTGTCTAGATAGTTTTGATACTCATTTTAGTGGGAGACTAATCGTTGTTACTGAAAATCAAATATCAGGAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAGGTAATATTTATTAGTGTCAGTTTCACGTATAACCACTGAACTTTATCCACTATAACAGTAACCGTAAAGATAAGATACCTGGCCTAACTCAATCTCAAAAGTTAGCTCGTGAGGAGAGGATTGCTCGAGTCTATATTAGGAGAGCACCAATCCATTCATCAACCAATGTGAGACTTTTATTCACTCTAACACTCCCCTTCACGCCCATGCCCAACTGAAGCGTAGACTGGGAGCCCAAAGAGGGATACCATGTAAAGATGATTTTAGGCCTAACCAAGAAACTAATTTTTGTCACACTAAAGTTACTAAACATAAGATGTTGTTTGTTTGTTATTTACAGGTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGA</genome_strand>
        <mrna_strand>GAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAG....................................................................................................GAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAACCATGACTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCTCGACAACATGGCTATTCATGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAATGATTCGTCTCCGATGCAGAATCTGGAAAGAGACTTGCACAG....................................................................................................................................................................................................................................................................................................................................................GTTGTTAGTGATCCAAGTCTTACAAAATCAAGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E327166" ref_strand="+" ref_description="SGN-E327166 [cTOC-18-J7]">
      <seq>ttggttcgattacaggaaacacaaacacattggctggaaatgtacctccaaaggccaacctcggggacttgaggggtttagcaagggggctcgatggacttaacagctcagccatgattgacggtggtgactttgatggtgccaaagcttacaaagacagcaaggtttgcaatatgctcactatgcaggaattccatagacgataccacgaagagactggcatcacatttgcctccctataccctggctgcatcgcgacaacagggctattcagggagcatatccccttgtttaggctccttttccctccattccagaagtttatcaccaaaggattcgtctccgaggcagaatctggaaagagacttgcacaggttgttagtgatccaagtcttacaaaatcaggtgtgtactggagctggaacaagaactcttcctcctttgagaaccagttgtcagaagaagctagtgacgttgagaaagcgcgtaaagtgtgggaagtcagtgagaaactcgtgggattggcttagattttttgctgattgagttcaaccatcaccaagacgaacacgaaaaaggagttgatgaaggagaatttgaatcgagtctgttttgttgtagttaaaaagttgtcacttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="60954" stop="62634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61254" g_stop="61268" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61269" i_stop="61368" i_length="100">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61369" g_stop="61727" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="374" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61728" i_stop="62067" i_length="340">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62068" g_stop="62334" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="641" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E327166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61254" e_stop="61268"/>
          <exon e_start="61369" e_stop="61727"/>
          <exon e_start="62068" e_stop="62334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTCGATTACAGGTAACAGTCAGACCTCTTTATAACAACATCGTTTGTCTAGATAGTTTTGATACTCATTTTAGTGGGAGACTAATCGTTGTTACTGAAAATCAAATATCAGGAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAGGTAATATTTATTAGTGTCAGTTTCACGTATAACCACTGAACTTTATCCACTATAACAGTAACCGTAAAGATAAGATACCTGGCCTAACTCAATCTCAAAAGTTAGCTCGTGAGGAGAGGATTGCTCGAGTCTATATTAGGAGAGCACCAATCCATTCATCAACCAATGTGAGACTTTTATTCACTCTAACACTCCCCTTCACGCCCATGCCCAACTGAAGCGTAGACTGGGAGCCCAAAGAGGGATACCATGTAAAGATGATTTTAGGCCTAACCAAGAAACTAATTTTTGTCACACTAAAGTTACTAAACATAAGATGTTGTTTGTTTGTTATTTACAGGTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGT</genome_strand>
        <mrna_strand>TTGGTTCGATTACAG....................................................................................................GAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAG....................................................................................................................................................................................................................................................................................................................................................GTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E725605" ref_strand="+" ref_description="SGN-E725605 [LA04AG11]">
      <seq>ggaaacacaaacacattggctggaaatgtacctccaaaggccaacctcggggacttgaggggtttagcaagggggctcgatggacttaacagctcagccatgattgacggtggtgactttgatggtgccaaagcttacaaagacagcaaggtttgcaatatgctcactatgcaggaattccatagacgactaccacgaagagactggcatcacatttgcctccttataccctggctgcatcgcgacaacagggctattcagggagcatatccccttgtttaggctcctttttccttccattccagaagtttatcaccaaaggattcgtctccgaggcagaatctggaaagagacttgcacaggtaatatttattagtgtcagtttcacgtataaccactgaactttatccattatacagtaaccgntaagataagatacctggcctaactcaatctcaaagttagctcgtgaggagaggattgctcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="61068" stop="62156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61368" g_stop="61856" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E725605" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61368" e_stop="61856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGA-TACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCC-TTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAGGTAATATTTATTAGTGTCAGTTTCACGTATAACCACTGAACTTTATCCACTATAACAGTAACCGTAAAGATAAGATACCTGGCCTAACTCAATCTCAAAAGTTAGCTCGTGAGGAGAGGATTGCTCGAG</genome_strand>
        <mrna_strand>GGAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGACTACCACGAAGAGACTGGCATCACATTTGCCTCCTTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTTCCTTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAGGTAATATTTATTAGTGTCAGTTTCACGTATAACCACTGAACTTTATCCATTAT-ACAGTAACCGNTAAGATAAGATACCTGGCCTAACTCAATCTC-AAAGTTAGCTCGTGAGGAGAGGATTGCTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E371330" ref_strand="+" ref_description="SGN-E371330 [TUS-27-A21]">
      <seq>ggaaatgtacctccaaaggccaacctcggggacttgaggggtttagcaagggggctcgatggacttaacagctcagccatgattgacggtggtgactttgatggtgccaaagcttacaaagacagcaaggtttgcaatatgctcactatgcaggaattccatagacgataccacgaagagactggcatcacatttgcctccctataccctggctgcatcgcgacaacagggctattcagggagcatatccccttgtttaggctccttttccctccattccagaagtttatcaccaaaggattcgtctccgaggcagaatctggaaagagacttgcacaggttgttagtgatccaagtcttacaaaatcaggtgtgtactggagctggaacaagaactcttcctcctttgagaaccagttgtcagaagaagctagtgacgttgagaaagcgcgtaaagtgtgggaagtcagtgagaaactcgtgggattggcttagattttttgctgattgagttcaaccatcaccaagacgaacacgaaaaaggagttgatgaaggagaatttgaatcgagtctgttttgttgtagttaaaaagttgtcacttcgtaaaatttttgagttaggaataaatatcattcatccttttagaatcgagcgcttaccaacacgccaacaattatagcgctcacaacttttagtccacccnaacagcgtcatgttcgatcaatgactcactcaacattttccagtatgaatgatcatgtgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="61089" stop="62795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61389" g_stop="61727" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62067" i_length="340">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62068" g_stop="62495" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="767" r_length="428" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E371330" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61389" e_stop="61727"/>
          <exon e_start="62068" e_stop="62495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAGGTAATATTTATTAGTGTCAGTTTCACGTATAACCACTGAACTTTATCCACTATAACAGTAACCGTAAAGATAAGATACCTGGCCTAACTCAATCTCAAAAGTTAGCTCGTGAGGAGAGGATTGCTCGAGTCTATATTAGGAGAGCACCAATCCATTCATCAACCAATGTGAGACTTTTATTCACTCTAACACTCCCCTTCACGCCCATGCCCAACTGAAGCGTAGACTGGGAGCCCAAAGAGGGATACCATGTAAAGATGATTTTAGGCCTAACCAAGAAACTAATTTTTGTCACACTAAAGTTACTAAACATAAGATGTTGTTTGTTTGTTATTTACAGGTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAGAATCGAGCGCTTACCAACACGCCAACAATTATAGCGCTCACAACTTTAAGTCCACCCAACAAGCGTCATGTTCGATCAATGACTCACTCAACAATTTCCAGTATGAATGATCATGTGAAT</genome_strand>
        <mrna_strand>GGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAG....................................................................................................................................................................................................................................................................................................................................................GTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAGAATCGAGCGCTTACCAACACGCCAACAATTATAGCGCTCACAACTTTTAGTCCACCCNAACAGCGTCATGTTCGATCAATGACTCACTCAACATTTTCCAGTATGAATGATCATGTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E268380" ref_strand="+" ref_description="SGN-E268380 [cLEI-13-I18]">
      <seq>ggaaatgtacctccaaaggccaacctcggggacttgaggggtttagcaagggggctcgatggacttaacagctcagccatgattgacggtggtgactttgatggtgccaaagcttacaaagacagcaaggtttgcaatatgctcactatgcaggaattccatagacgataccacgaagagactggcatcacatttgcctccctataccctggctgcatcgcgacaacagggctattcagggagcatatccccttgtttaggctccttttccctccattccagaagtttatcaccaaaggattcgtctccgaggcagaatctggaaagagacttgcacaggttgttagtgatccaagtcttacaaaatcaggtgtgtactggagctggaacaagaactcttcctcctttgagaaccagttgtcagaagaagctagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="61089" stop="62465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61389" g_stop="61727" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62067" i_length="340">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62068" g_stop="62165" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="437" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E268380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61389" e_stop="61727"/>
          <exon e_start="62068" e_stop="62165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAGGTAATATTTATTAGTGTCAGTTTCACGTATAACCACTGAACTTTATCCACTATAACAGTAACCGTAAAGATAAGATACCTGGCCTAACTCAATCTCAAAAGTTAGCTCGTGAGGAGAGGATTGCTCGAGTCTATATTAGGAGAGCACCAATCCATTCATCAACCAATGTGAGACTTTTATTCACTCTAACACTCCCCTTCACGCCCATGCCCAACTGAAGCGTAGACTGGGAGCCCAAAGAGGGATACCATGTAAAGATGATTTTAGGCCTAACCAAGAAACTAATTTTTGTCACACTAAAGTTACTAAACATAAGATGTTGTTTGTTTGTTATTTACAGGTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGA</genome_strand>
        <mrna_strand>GGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAG....................................................................................................................................................................................................................................................................................................................................................GTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E288365" ref_strand="-" ref_description="SGN-E288365 [cLES-16-I5]">
      <seq>aggggtttagcaagggggctcgatggacttaacagctcagccatgattgacggtggtgactttgatggtgccaaagcttacaaagacagcaaggtttgcaatatgctcactatgcaggaattccatagacgataccacgaagagactggcatcacatttgcctccctataccctggctgcatcgcgacaacagggctattcagggagcatatccccttgtttaggctccttttccctccattccagaagtttatcaccaaaggattcgtctccgaggcagaatctggaaagagacttgcacaggttgttagtgatccaagtcttacaaaatcaggtgtgtactggagctggaacaagaactcttcctcctttgagaaccagttgtcagaagaagctagtgacgttgagaaagcgcgtaaagtgtgggaagtcagtgagaaactcgtgggattggcttagattttttgctgattgagttcaaccatcaccaagacgaacacgaaaaaggagttgatgaaggagaatttgaatcgagtctgttttgttgtagttaaaaagttgtcacttcgtaaaatttttgagttaggaataaatatcattcatccttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="61125" stop="62677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61425" g_stop="61727" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62067" i_length="340">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62068" g_stop="62381" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="617" r_length="314" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E288365" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288365" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61425" e_stop="61727"/>
          <exon e_start="62068" e_stop="62381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAGGTAATATTTATTAGTGTCAGTTTCACGTATAACCACTGAACTTTATCCACTATAACAGTAACCGTAAAGATAAGATACCTGGCCTAACTCAATCTCAAAAGTTAGCTCGTGAGGAGAGGATTGCTCGAGTCTATATTAGGAGAGCACCAATCCATTCATCAACCAATGTGAGACTTTTATTCACTCTAACACTCCCCTTCACGCCCATGCCCAACTGAAGCGTAGACTGGGAGCCCAAAGAGGGATACCATGTAAAGATGATTTTAGGCCTAACCAAGAAACTAATTTTTGTCACACTAAAGTTACTAAACATAAGATGTTGTTTGTTTGTTATTTACAGGTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAGAATCGA</genome_strand>
        <mrna_strand>AGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAG....................................................................................................................................................................................................................................................................................................................................................GTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E288515" ref_strand="+" ref_description="SGN-E288515 [cLES-8-B6]">
      <seq>aagggggctcgatggacttaacagctcagccatgattgacggtggtgactttgatggtgccaaagcttacaaagacagcaaggtttgcaatatgctcactatgcaggaattccatagacgataccacgaagagactggcatcacatttgcctccctataccctggctgcatcgcgacaacagggctattcagggagcatatccccttgtttaggctccttttccctccattccagaagtttatcaccaaaggattcgtctccgaggcagaatctggaaagagacttgcacaggttgttagtgatccaagtcttacaaaatcaggtgtgtactggagctggaacaagaactcttcctcctttgagaaccagttgtcagaagaagctagtgacgttgagaaagcgcgtaaagtgtgggaagtcagtgagaaactcgtgggattggcttagattttttgctgattgagttcaaccatcaccaagacgaacacgaaaaaggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="61136" stop="62576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61436" g_stop="61727" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62067" i_length="340">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62068" g_stop="62276" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="501" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E288515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61436" e_stop="61727"/>
          <exon e_start="62068" e_stop="62276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAGGTAATATTTATTAGTGTCAGTTTCACGTATAACCACTGAACTTTATCCACTATAACAGTAACCGTAAAGATAAGATACCTGGCCTAACTCAATCTCAAAAGTTAGCTCGTGAGGAGAGGATTGCTCGAGTCTATATTAGGAGAGCACCAATCCATTCATCAACCAATGTGAGACTTTTATTCACTCTAACACTCCCCTTCACGCCCATGCCCAACTGAAGCGTAGACTGGGAGCCCAAAGAGGGATACCATGTAAAGATGATTTTAGGCCTAACCAAGAAACTAATTTTTGTCACACTAAAGTTACTAAACATAAGATGTTGTTTGTTTGTTATTTACAGGTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTT</genome_strand>
        <mrna_strand>AAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAG....................................................................................................................................................................................................................................................................................................................................................GTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E747193" ref_strand="+" ref_description="SGN-E747193 [GI|9049762]">
      <seq>tttccctccatccagaagtttatcaccaaaggattcgtctccgaggcagaatctggaaagagacttgcacaggttgttagtgatccaagtcttacaaaatcaggtgtgtactggagctggaacaagaactcttcctcctttgagaaccagttgtcagaagaagctagtgacgttgagaaagcgcgtaaagtgtgggaagtcagtgagaaactcgtgggattggcttagattttctgctgattgagttcaaccatcaccaagacgaacacgaaaaaggagttgatgaaggagaatttgaatcgagtctgttttgttgtagttaaaaagttgtcacttcgtaaaatttttgagttaggaataaatatcattcatccttttagaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="61355" stop="62677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61655" g_stop="61727" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61728" i_stop="62067" i_length="340">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62068" g_stop="62376" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="381" r_length="309" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="416"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E747193" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61655" e_stop="61727"/>
          <exon e_start="62068" e_stop="62376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAGGTAATATTTATTAGTGTCAGTTTCACGTATAACCACTGAACTTTATCCACTATAACAGTAACCGTAAAGATAAGATACCTGGCCTAACTCAATCTCAAAAGTTAGCTCGTGAGGAGAGGATTGCTCGAGTCTATATTAGGAGAGCACCAATCCATTCATCAACCAATGTGAGACTTTTATTCACTCTAACACTCCCCTTCACGCCCATGCCCAACTGAAGCGTAGACTGGGAGCCCAAAGAGGGATACCATGTAAAGATGATTTTAGGCCTAACCAAGAAACTAATTTTTGTCACACTAAAGTTACTAAACATAAGATGTTGTTTGTTTGTTATTTACAGGTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAGA</genome_strand>
        <mrna_strand>TTTCCCTCCA-TCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAG....................................................................................................................................................................................................................................................................................................................................................GTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTCTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E316046" ref_strand="+" ref_description="SGN-E316046 [cTOA-23-K6]">
      <seq>ttgaatacggaatcataattcacatgatcattcatactggaaattgttgagtgagtcattgatcgaacatgacgcttgttgggtggacttaaagttgtgagcgctataattgttggcgtgttggtaagcgctcgattctaaaaggatgaatgatatttattcctaactcaaaaattttacgaagtgacaactttttaactacaacaaaacagactcgattcaaattctccttcatcaactcctttttcgtgttcgtcttggtgatgggtgaactcaatcagcaaaaaatctaagccaatcccacgagtttctcactgacttcccacactttacgcgctttctcaacgtcactaacttcttctgacaactgggtctcaaaggaggaagagatcttgttccagctccagtacacacctgattttgtaagaattggatcactaacaacctgtgcaagtctctttccagattctgcctcggagacgaatcctttggtgataaacttctggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="62811" stop="61363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62571" g_stop="62571" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62570" i_stop="62512" i_length="59">
            <donor d_prob="0.359" d_score="0.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62511" g_stop="62066" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="447" r_length="446" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62065" i_stop="61726" i_length="340">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61725" g_stop="61663" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="510" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E316046" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62571" e_stop="62571"/>
          <exon e_start="62511" e_stop="62066"/>
          <exon e_start="61725" e_stop="61663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGCTCTTATATAGAACTCAACAGAAGTTGTTTGTTGCTAATTTTTGTTTTTATGTAGTGAATACGGAATCATAATTCACATGATCATTCATACTGGAAATTGTTGAGTGAGTCATTGATCGAACATGACGCTTGTTGGGTGGACTTAAAGTTGTGAGCGCTATAATTGTTGGCGTGTTGGTAAGCGCTCGATTCTAAAAGGATGAATGATATTTATTCCTAACTCAAAAATTTTACGAAGTGACAACTTTTTAACTACAACAAAACAGACTCGATTCAAATTCTCCTTCATCAACTCCTTTTTCGTGTTCGTCTTGGTGATGGTTGAACTCAATCAGCAAAAAATCTAAGCCAATCCCACGAGTTTCTCACTGACTTCCCACACTTTACGCGCTTTCTCAACGTCACTAGCTTCTTCTGACAACTGGTTCTCAAAGGAGGAAGAGTTCTTGTTCCAGCTCCAGTACACACCTGATTTTGTAAGACTTGGATCACTAACAACCTGTAAATAACAAACAAACAACATCTTATGTTTAGTAACTTTAGTGTGACAAAAATTAGTTTCTTGGTTAGGCCTAAAATCATCTTTACATGGTATCCCTCTTTGGGCTCCCAGTCTACGCTTCAGTTGGGCATGGGCGTGAAGGGGAGTGTTAGAGTGAATAAAAGTCTCACATTGGTTGATGAATGGATTGGTGCTCTCCTAATATAGACTCGAGCAATCCTCTCCTCACGAGCTAACTTTTGAGATTGAGTTAGGCCAGGTATCTTATCTTTACGGTTACTGTTATAGTGGATAAAGTTCAGTGGTTATACGTGAAACTGACACTAATAAATATTACCTGTGCAAGTCTCTTTCCAGATTCTGCCTCGGAGACGAATCCTTTGGTGATAAACTTCTGGAATG</genome_strand>
        <mrna_strand>T...........................................................TGAATACGGAATCATAATTCACATGATCATTCATACTGGAAATTGTTGAGTGAGTCATTGATCGAACATGACGCTTGTTGGGTGGACTTAAAGTTGTGAGCGCTATAATTGTTGGCGTGTTGGTAAGCGCTCGATTCTAAAAGGATGAATGATATTTATTCCTAACTCAAAAATTTTACGAAGTGACAACTTTTTAACTACAACAAAACAGACTCGATTCAAATTCTCCTTCATCAACTCCTTTTTCGTGTTCGTCTTGGTGATGGGTGAACTCAATCAGCAAAAAATCTAAGCCAATCCCACGAGTTTCTCACTGACTTCCCACACTTTACGCGCTTTCTCAACGTCACTAACTTCTTCTGACAACTGGGTCTCAAAGGAGGAAGAGATCTTGTTCCAGCTCCAGTACACACCTGATTTTGTAAGAATTGGATCACTAACAACCT....................................................................................................................................................................................................................................................................................................................................................GTGCAAGTCTCTTTCCAGATTCTGCCTCGGAGACGAATCCTTTGGTGATAAACTTCTGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E713019" ref_strand="+" ref_description="SGN-E713019 [FB06CA04]">
      <seq>cacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaagctaactggtctgactggaacacttcttactaagtcgattctctgcaattttcaaacttcctttagtgtttgttctgttttggttagattttcgagtttgttttaggtttggtttctttcctgtacgtgctttgcacctgtgtataacgcttgaaaaataaatgaaacattagaaatgattcagcttattcgatgacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65092" stop="62425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64792" g_stop="64766" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="271" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="392" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="62718" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="760" r_length="368" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E713019" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64792" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTTATTCGATGACATATTCGAGC</genome_strand>
        <mrna_strand>CACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTTATTCGATGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E276866" ref_strand="-" ref_description="SGN-E276866 [cLEN-14-J23]">
      <seq>ttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtggtaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaagctaactggtctgactggaacacttcttaataagtcgattctctgcaattttcaaacttcctttagtgtttgttctgttttggttagattttcgagtttgttttaggtttggtttctttcctgtacgtgctttgcacctgtgtataacgcttgaaaaataaatgaaacattagaaatgattcagcttattcgatgaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64150" stop="62425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63850" g_stop="63777" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="195" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63085" g_stop="62728" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="553" r_length="358" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="572"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E276866" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276866" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63850" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTTATTCGATGAC</genome_strand>
        <mrna_strand>TTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGGTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTAATAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTTATTCGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E274725" ref_strand="-" ref_description="SGN-E274725 [cLEN-13-J23]">
      <seq>actgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaagctaactggtctgactggaacacttcttactaagtcgattctctgcaattttcaaacttcctttagtgtttgttctgttttggttagattttcgagtttgttttaggtttggtttctttcctgtacgtgctttgcacctgtgtataacgcttgaaaaataaatgaaacattagaaatgattcagcttattcgatgaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63681" stop="62425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="139" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63085" g_stop="62728" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="497" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="516"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E274725" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274725" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTTATTCGATGAC</genome_strand>
        <mrna_strand>GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTTATTCGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E715555" ref_strand="+" ref_description="SGN-E715555 [FB14CE05]">
      <seq>gtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaagctaactggtctgactggaacacttcttactaagtcgattctctgcaattttcaaacttcctttagtgtttgttctgttttggttagattttcgagtttgttttaggtttggtttctttcctgtacgtgctttgcacctgtgtataacgcttgaaaaataaatgaaacattagaaatgattcgtcttataaagaaaaaaatgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63670" stop="62436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63370" g_stop="63260" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63085" g_stop="62738" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="459" r_length="348" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E715555" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63370" e_stop="63260"/>
          <exon e_start="63085" e_stop="62738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTT</genome_strand>
        <mrna_strand>GTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E397455" ref_strand="-" ref_description="SGN-E397455 [TUS-45-D10]">
      <seq>caaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccaggtgatcaagttattaaggattttgaaggaagttttgcttttgttatttatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttttgatgaagtagaggttattaaagctggatgtggtaagtcatttgcaccctttcccccaggttgtatgttccatagtgagaaaggactaatgaatttcgagcccccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaaggtaactggtttgactggaacactttttactaagtcgattttttgcaattttcaaacttcctttagtgtttgttttgttttggttagattttcgagtttgttttaggtttggtttttttcctgtacgtgctttgcccctgtgtataacgcttgaaaaataaatgaaacctttgaaatgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64231" stop="62446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63931" g_stop="63777" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="276" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.940" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63085" g_stop="62747" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="615" r_length="339" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="616" polyA_stop="639"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E397455" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397455" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63931" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATG</genome_strand>
        <mrna_strand>CAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGGTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATTTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTTTGATGAAGTAGAGGTTATTAAAGCTGGATGTGGTAAGTCATTTGCACCCTTTCCCCCAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCCCCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGGTAACTGGTTTGACTGGAACACTTTTTACTAAGTCGATTTTTTGCAATTTTCAAACTTCCTTTAGTGTTTGTTTTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTTTTTCCTGTACGTGCTTTGCCCCTGTGTATAACGCTTGAAAAATAAATGAAACCTTTGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E397335" ref_strand="-" ref_description="SGN-E397335 [TUS-45-D9]">
      <seq>gaaggggtaatgggtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaaggtaactggtttgactggaacactttttactaagtcgattttttgcaattttcaaacttcctttagtgtttgttttgttttggttagattttcgagtttgttttaggtttggtttttttcctgtacgtgctttgcacctgtaaagaacgcttgaaaaataaatgaaacattagaaatgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63302" stop="62446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63002" g_stop="62747" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="257" polyA_stop="280"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E397335" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397335" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63002" e_stop="62747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATG</genome_strand>
        <mrna_strand>GAAGGGGTAATGGGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGGTAACTGGTTTGACTGGAACACTTTTTACTAAGTCGATTTTTTGCAATTTTCAAACTTCCTTTAGTGTTTGTTTTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTTTTTCCTGTACGTGCTTTGCACCTGTAAAGAACGCTTGAAAAATAAATGAAACATTAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E253978" ref_strand="-" ref_description="SGN-E253978 [cLEG-28-N24]">
      <seq>aggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaagctaactggtctgactggaacacttcttactaagtcgattctctgcaattttcaaacttcctttagtgtttgttctgttttggttagattttcgagtttgttttaggtttggtttctttcctgtacgtgctttgcacctgtgtataacgcttgaaaaataaatgaaacattaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64322" stop="62451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64022" g_stop="63777" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="367" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63085" g_stop="62751" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="702" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E253978" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253978" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64022" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGA</genome_strand>
        <mrna_strand>AGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E261248" ref_strand="-" ref_description="SGN-E261248 [cLEG-68-G23]">
      <seq>atgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaagctaactggtctgactggaacacttcttactaagtcgattctctgcaattttcaaacttcctttagtgtttgttctgttttggttagattttcgagtttgttttaggtttggtttctttcctgtacgtgctttgcacctgtgtataacgcttgaaaaataaatgaaacattaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64303" stop="62451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64003" g_stop="63777" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="348" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63085" g_stop="62751" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="683" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E261248" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261248" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64003" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGA</genome_strand>
        <mrna_strand>ATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E253728" ref_strand="-" ref_description="SGN-E253728 [cLEG-32-M1]">
      <seq>catggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaagctaactggtctgactggaacacttcttactaagtcgattctctgcaattttcaaacttcctttagtgtttgttctgttttggttagattttcgagtttgttttaggtttggtttctttcctgtacgtgctttgcacctgtgtataacgcttgaaaaataaatgaaacattaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64284" stop="62451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63984" g_stop="63777" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="329" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63085" g_stop="62751" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="664" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E253728" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253728" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63984" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGA</genome_strand>
        <mrna_strand>CATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E256652" ref_strand="-" ref_description="SGN-E256652 [cLEG-40-I1]">
      <seq>tgctagtccattgaagccttacaggnacacttagagacaggggactcttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaagctaactggtctgactggaacacttcttactaagtcgattctctgcaattttcaaacttcctttagtgtttgttctgttttggttagattttcgagtttgttttaggtttggtttctttcctgtacgtgctttgcacctgtgtataacgcttgaaaaataaatgaaacattaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64210" stop="62451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63910" g_stop="63777" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="259" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63085" g_stop="62751" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="594" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E256652" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256652" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63910" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAGT-CATTGAAGCC-TACAGG-ACACTTAGAGACAGGGGAC-CTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGA</genome_strand>
        <mrna_strand>TGCTAGTCCATTGAAGCCTTACAGGNACACTTAGAGACAGGGGACTCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E254415" ref_strand="-" ref_description="SGN-E254415 [cLEG-27-B17]">
      <seq>atccagctgatcaagttattaaggattttgaaggaagtttagcttttgttatctatgatagtaaagctccacctgtatttgtagctttgggttcagatggtcgggtaaagttattttggggtatcgccgctgatgcatctgtggtaatttctcatgatgtagaggttattaaagctgtatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaccaagatgagggctatgccaagagtacatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctatagttggcagtgaagctaactggtctgactggtcacacttcttactaagtcgattctctgcaattttcaaacttcctccagtgtgtgctctgctatggttagattttcgagtctgcattaggatcggcttctttcctgtacgtgctttgcacctgtgcataacgcttgaagaataaatgaaccattaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64165" stop="62451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63865" g_stop="63777" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="210" r_length="121" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63085" g_stop="62751" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="546" r_length="336" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E254415" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254415" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63865" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGG-AACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGA</genome_strand>
        <mrna_strand>ATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTAGCTTTTGTTATCTATGATAGTAAAGCTCCACCTGTATTTGTAGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTCGGGTAAAGTTATTTTGGGGTATCGCCGCTGATGCATCTGTGGTAATTTCTCATGATGTAGAGGTTATTAAAGCTGTATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGACCAAGATGAGGGCTATGCCAAGAGTACATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTATAGTTGGCAGTGAAGCTAACTGGTCTGACTGGTCACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTCCAGTGTGTGCTCTGCTATGGTTAGATTTTCGAGTCTGCATTAGGATCGGCTTCTTTCCTGTACGTGCTTTGCACCTGTGCATAACGCTTGAAGAATAAATGAACCATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E251552" ref_strand="-" ref_description="SGN-E251552 [cLEG-9-I12]">
      <seq>agctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaagctaactggtctgactggaacacttcttactaagtcgattctctgcaattttcaaacttcctttagtgtttgttctgttttggttagattttcgagtttgttttaggtttggtttctttcctgtacgtgctttgcacctgtgtataacgcttgaaaaataaatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64161" stop="62457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63861" g_stop="63777" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="206" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63085" g_stop="62757" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="535" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E251552" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251552" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63861" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAAC</genome_strand>
        <mrna_strand>AGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E711125" ref_strand="+" ref_description="SGN-E711125 [FB01AD03]">
      <seq>cacttgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaagctaactggtctgactggaacacttcttactaagtcgattctctgcaattttcaaacttcctttagtggttgttctgttttggttagattttcgagtttgttttaagtttgggttctttcctgtacgtgctttgcacctgtgtataacgcttgaaaaataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65270" stop="62462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64975" g_stop="64766" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="453" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="574" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="62762" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="898" r_length="324" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E711125" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64975" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAAT</genome_strand>
        <mrna_strand>CACT-TGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGGTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAAGTTTGGGTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E210973" ref_strand="+" ref_description="SGN-E210973 [cLEC-69-B16]">
      <seq>tcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaagctaactggtctgactggaacacttcttactaagtcgattctctgcaattttcaaacttcctttagtgtttgttctgttttggttagattttcgagtttgttttaggtttggtttctttcctgtacgtgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65171" stop="62491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64871" g_stop="64766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="350" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="471" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="62791" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="766" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E210973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64871" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTG</genome_strand>
        <mrna_strand>TCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E262498" ref_strand="+" ref_description="SGN-E262498 [cLEG-56-L24]">
      <seq>tcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaataacatccctagaattggcagtgaagctaactggtctgactggaacacttcttactaagtcgattctctgcaaatttcaaacttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65171" stop="62562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64871" g_stop="64766" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="350" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="471" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="62862" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="695" r_length="224" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E262498" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64871" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTT</genome_strand>
        <mrna_strand>TCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAACATCCCTAGAATTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAAATTTCAAACTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E259703" ref_strand="-" ref_description="SGN-E259703 [cLEG-42-F5]">
      <seq>agctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttgatttattgctgatgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgcacaagatgagggctatgccaagagttgatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccttagagttggcagtgaagctaactgttttgactggaacacttcttactaagtcgattatatgtcaattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64161" stop="62571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63861" g_stop="63777" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="206" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63085" g_stop="62871" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="422" r_length="216" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E259703" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259703" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63861" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTG-CAATTTTCA</genome_strand>
        <mrna_strand>AGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGATTTATTGCTGATGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGCACAAGATGAGGGCTATGCCAAGAGTTGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCTTAGAGTTGGCAGTGAAGCTAACTGTTTTGACTGGAACACTTCTTACTAAGTCGATTATATGTCAATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E262242" ref_strand="+" ref_description="SGN-E262242 [cLEG-56-A20]">
      <seq>aaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcgatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctaaagttggcagtgaagctaactggtctgactggaacacttcttactaagtcgattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65293" stop="62582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64993" g_stop="64766" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="472" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="592" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="62882" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="796" r_length="204" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E262242" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64993" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTC</genome_strand>
        <mrna_strand>AAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTC-GATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAAAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E276111" ref_strand="+" ref_description="SGN-E276111 [cLEN-12-P3]">
      <seq>tttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaagctaactggtctgactggaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64317" stop="62602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64017" g_stop="63777" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="362" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63085" g_stop="62902" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="546" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E276111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64017" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACAC</genome_strand>
        <mrna_strand>TTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E214027" ref_strand="+" ref_description="SGN-E214027 [cLEC-80-P2]">
      <seq>aaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagcccacttcaaagtggatatgtattcaagagttatagcatccctagaagtggcagtgaagctaactggtctgactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65253" stop="62606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64953" g_stop="64766" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="432" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="553" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="62906" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="732" r_length="179" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E214027" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64953" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGA</genome_strand>
        <mrna_strand>AAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCCACTTCAAAGTGGATATGTATTCAAGAGTT-ATAGCATCCCTAGAAGTGGCAGTGAAGCTAACTGGTCTGACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E699355" ref_strand="+" ref_description="SGN-E699355 [FA09DA05]">
      <seq>cgttcatcttgaagctaaaaaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaaaaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggaaatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttaaagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcaaatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtaaaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaaaatgagggctatgcccaaaagtaaatagtgaaggggtaatgtgtggaccccacttcaaagtggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65311" stop="62665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65013" g_stop="64766" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="492" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="613" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="62965" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="735" r_length="122" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E699355" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65013" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATG-CCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATAT</genome_strand>
        <mrna_strand>CGTTCATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAAAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAAATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAAAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAAATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAAAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAAATGAGGGCTATGCCCAAAAGTAAATAGTGAAGGGGTAATGTGTGGACCCCACTTCAAAGTGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E375256" ref_strand="+" ref_description="SGN-E375256 [TUS-34-J7]">
      <seq>aacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65291" stop="62686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64991" g_stop="64766" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="470" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="591" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="62986" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="691" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E375256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64991" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="62986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGG</genome_strand>
        <mrna_strand>AACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E254402" ref_strand="+" ref_description="SGN-E254402 [cLEG-27-I14]">
      <seq>aaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaagactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65282" stop="62700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64982" g_stop="64766" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="461" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="582" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="63000" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="668" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E254402" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64982" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="63000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAA</genome_strand>
        <mrna_strand>AAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAAGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E699226" ref_strand="+" ref_description="SGN-E699226 [FA09AG07]">
      <seq>ccattttgaagctaaaaaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaaaaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggaaatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttggggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacccttaaagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagaaaaactggaactgtatttgttgctttgggttcaaatgggggggggaagttattttggggtattgctgctgatggatctggggggatttctgatgatgtaaaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagggaaaaaggactaatgaatttcgaccacccaatgaaacaaaatgagggctatgcccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65309" stop="62714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65010" g_stop="64766" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="489" r_length="244" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="610" r_length="121" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="63012" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="685" r_length="75" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E699226" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65010" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="63012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATG-AACAAGATGAGGGCTATGCCAAGA</genome_strand>
        <mrna_strand>CCATTTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAAAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAAATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGGGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACCCTTAAAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGAAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAAATGGGGGGGGGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGGGGGGATTTCTGATGATGTAAAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGGGAAAAAGGACTAATGAATTTCGACCACCCAATGAAACAAAATGAGGGCTATGCCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E210606" ref_strand="+" ref_description="SGN-E210606 [cLEC-68-K3]">
      <seq>aaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65282" stop="62730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64982" g_stop="64766" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="461" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="582" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="63030" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="638" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E210606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64982" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="63030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAG</genome_strand>
        <mrna_strand>AAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E253810" ref_strand="+" ref_description="SGN-E253810 [cLEG-28-I10]">
      <seq>aaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65276" stop="62733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64976" g_stop="64766" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="455" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="576" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="63033" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="629" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E253810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64976" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="63033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAAC</genome_strand>
        <mrna_strand>AAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E254813" ref_strand="+" ref_description="SGN-E254813 [cLEG-33-K20]">
      <seq>ctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaagactaatgaatttcgagcacccgatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65216" stop="62733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64916" g_stop="64766" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="395" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="516" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="63033" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="569" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E254813" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64916" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="63033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAAC</genome_strand>
        <mrna_strand>CTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAAGACTAATGAATTTCGAGCACCCGATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E212577" ref_strand="+" ref_description="SGN-E212577 [cLEC-74-N19]">
      <seq>aaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65294" stop="62741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64994" g_stop="64766" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="473" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="594" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="63041" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="639" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E212577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64994" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="63041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACC</genome_strand>
        <mrna_strand>AAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E273479" ref_strand="+" ref_description="SGN-E273479 [cLEN-3-B16]">
      <seq>aaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggttggnaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65282" stop="62747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64982" g_stop="64766" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="461" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="585" r_length="124" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="63047" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="624" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E273479" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64982" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="63047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGG-T-G-AAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCG</genome_strand>
        <mrna_strand>AAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTTGGNAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E251191" ref_strand="+" ref_description="SGN-E251191 [cLEG-10-D16]">
      <seq>ttgaagctaaaaaaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65305" stop="62749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65005" g_stop="64766" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="485" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="606" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="63049" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="643" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E251191" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65005" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="63049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGCT-AAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTT</genome_strand>
        <mrna_strand>TTGAAGCTAAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E212778" ref_strand="+" ref_description="SGN-E212778 [cLEC-73-N20]">
      <seq>tttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacacgttgtatgttccatagtgagaaaggactaatgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65259" stop="62749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64959" g_stop="64766" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="438" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="559" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="63049" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="596" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E212778" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64959" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="63049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTT</genome_strand>
        <mrna_strand>TTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAC..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E314511" ref_strand="+" ref_description="SGN-E314511 [cTOB-1-K7]">
      <seq>aaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65287" stop="62766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64987" g_stop="64766" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="466" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="587" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="63066" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="607" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E314511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64987" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="63066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAG</genome_strand>
        <mrna_strand>AAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E259601" ref_strand="+" ref_description="SGN-E259601 [cLEG-42-P20]">
      <seq>tcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65257" stop="62766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64957" g_stop="64766" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="436" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="557" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="63066" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="577" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E259601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64957" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="63066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAG</genome_strand>
        <mrna_strand>TCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E393984" ref_strand="+" ref_description="SGN-E393984 [TUS-14-G21]">
      <seq>atttcatcttgaagctaaaaaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctgggatgtgctaaatcatttgcaccctttcccacggttttatgttccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65313" stop="62958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65013" g_stop="64766" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="492" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63260" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="613" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63085" g_stop="63072" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="627" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E393984" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65013" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63260"/>
          <exon e_start="63085" e_stop="63072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCT-GGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCAT</genome_strand>
        <mrna_strand>ATTTCATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGGATGTGCTAAATCATTTGCACCCTTTCCCAC-G..............................................................................................................................................................................GTTTTATGTTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E251043" ref_strand="+" ref_description="SGN-E251043 [cLEG-17-N17]">
      <seq>aaatgtttacttccacaacaaacgctacaaaaattcttatcgactcgtccattgggacaccttttatgttacttttggagatgttgctgctcttgctttagttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaagattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcacatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagacgttattaaagctggatgtgctaagtcattttgcaccctttcccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65205" stop="62962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64905" g_stop="64766" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="385" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63262" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="505" r_length="120" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E251043" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64905" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATT-TGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCA-TTTGCACCCTTTCCCAC</genome_strand>
        <mrna_strand>AAATGTTTACTTCCACAACAAACGCTACAAAAATTCTTATCGACTCGTCCATTGGGACACCTTTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTAGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAAGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCACATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGACGTTATTAAAGCTGGATGTGCTAAGTCATTTTGCACCCTTTCCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E274236" ref_strand="+" ref_description="SGN-E274236 [cLEN-15-G19]">
      <seq>atcttgaagctaaaaaaaacaaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcacccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65308" stop="62967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65008" g_stop="64766" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="488" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63267" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="602" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E274236" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65008" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGAAGCTAAAAAAAAC-AAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTT</genome_strand>
        <mrna_strand>ATCTTGAAGCTAAAAAAAACAAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E259453" ref_strand="+" ref_description="SGN-E259453 [cLEG-42-E21]">
      <seq>aaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaaactggatgtgctaagtcatttgcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65294" stop="62970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64994" g_stop="64766" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="473" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63270" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="584" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E259453" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64994" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCC</genome_strand>
        <mrna_strand>AAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAACTGGATGTGCTAAGTCATTTGCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E250887" ref_strand="+" ref_description="SGN-E250887 [cLEG-13-I11]">
      <seq>aacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65291" stop="62970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64991" g_stop="64766" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="470" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63270" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="581" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E250887" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64991" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCC</genome_strand>
        <mrna_strand>AACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E258878" ref_strand="+" ref_description="SGN-E258878 [cLEG-41-C22]">
      <seq>ttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65258" stop="62970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64958" g_stop="64766" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="437" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63270" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="548" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E258878" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64958" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCC</genome_strand>
        <mrna_strand>TTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E259635" ref_strand="+" ref_description="SGN-E259635 [cLEG-42-M17]">
      <seq>tcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65257" stop="62970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64957" g_stop="64766" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="436" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63270" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="547" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E259635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64957" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCC</genome_strand>
        <mrna_strand>TCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E250565" ref_strand="+" ref_description="SGN-E250565 [cLEG-21-E7]">
      <seq>gaagctaaaaaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65303" stop="62971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65003" g_stop="64766" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="482" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63271" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="592" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E250565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65003" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACC</genome_strand>
        <mrna_strand>GAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E205957" ref_strand="+" ref_description="SGN-E205957 [cLEC-20-A6]">
      <seq>aaaaacataaaaaaaaacaaacgatgttggctatatttcgcaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65294" stop="63008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64994" g_stop="64766" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="473" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63308" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="546" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E205957" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64994" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAG</genome_strand>
        <mrna_strand>AAAAACATAAAAAAAAACAAACGATGTTGGCTATATTTCGCAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E254626" ref_strand="+" ref_description="SGN-E254626 [cLEG-29-K9]">
      <seq>aaacaaaaaaaaaaaccaaacgatgttggctatatttcacaaggcatttgctgatcctgctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccaccaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttaccttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65292" stop="63010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64992" g_stop="64766" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="474" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63310" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="545" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E254626" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64992" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAAAAAAAAA-CAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCA-CAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTA-CTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGT</genome_strand>
        <mrna_strand>AAACAAAAAAAAAAACCAAACGATGTTGGCTATATTTCACAAGGCATTTGCTGATCCTGCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACCAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACCTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E251909" ref_strand="+" ref_description="SGN-E251909 [cLEG-14-G9]">
      <seq>aaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttaccttccacaaccaaaccgctaccaaaaattcgtatcgactcgtccatttgaccacctcttatgttaccttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcaccaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgccaccaaatcaaacaatatgggctatcaccaaaaggtaccaaatgaagccatgcctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65281" stop="63010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64981" g_stop="64766" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="471" r_length="248" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63310" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="542" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E251909" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64981" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTA-CTTCCACAA-CAAA-CGCTA-CAAAAATTCGTATCGACTCGTCCATTTGA-CACCTCTTATGTTA-CTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCA-CAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTG-CA-CAAATCAAACAATATGGGCTATCACCAAAAGGTA-CAAATGAAGCCATG-CTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGT</genome_strand>
        <mrna_strand>AAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACCTTCCACAACCAAACCGCTACCAAAAATTCGTATCGACTCGTCCATTTGACCACCTCTTATGTTACCTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACCAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCCACCAAATCAAACAATATGGGCTATCACCAAAAGGTACCAAATGAAGCCATGCCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E274006" ref_strand="+" ref_description="SGN-E274006 [cLEN-8-I22]">
      <seq>aacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65275" stop="63010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64975" g_stop="64766" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="454" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63310" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="525" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E274006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64975" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGT</genome_strand>
        <mrna_strand>AACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E255841" ref_strand="+" ref_description="SGN-E255841 [cLEG-35-G10]">
      <seq>ttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65258" stop="63010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64958" g_stop="64766" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="437" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63310" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="508" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E255841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64958" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGT</genome_strand>
        <mrna_strand>TTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E273363" ref_strand="+" ref_description="SGN-E273363 [cLEN-3-N19]">
      <seq>ttgaagctaaaaaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65305" stop="63011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65005" g_stop="64766" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="484" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63311" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="554" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E273363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65005" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATG</genome_strand>
        <mrna_strand>TTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E254921" ref_strand="+" ref_description="SGN-E254921 [cLEG-33-A14]">
      <seq>caaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65277" stop="63011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64977" g_stop="64766" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="456" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63311" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="526" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E254921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64977" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATG</genome_strand>
        <mrna_strand>CAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E276303" ref_strand="+" ref_description="SGN-E276303 [cLEN-21-B1]">
      <seq>aaaaaaaaacatacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65286" stop="63012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64986" g_stop="64766" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="465" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63312" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="534" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E276303" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64986" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGAT</genome_strand>
        <mrna_strand>AAAAAAAAACATACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E259880" ref_strand="+" ref_description="SGN-E259880 [cLEG-51-N4]">
      <seq>ctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaagaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65216" stop="63012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64916" g_stop="64766" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="395" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63312" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="464" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E259880" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64916" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGAT</genome_strand>
        <mrna_strand>CTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAAGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E248764" ref_strand="+" ref_description="SGN-E248764 [cLEG-5-G8]">
      <seq>aaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65294" stop="63013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64994" g_stop="64766" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="473" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63313" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="541" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E248764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64994" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGA</genome_strand>
        <mrna_strand>AAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E254313" ref_strand="+" ref_description="SGN-E254313 [cLEG-27-D18]">
      <seq>catcttgaagctaaaaaaaacaacggaatatcaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65309" stop="63019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65009" g_stop="64766" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="487" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63319" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="549" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E254313" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65009" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTC</genome_strand>
        <mrna_strand>CATCTTGAAGCTAAAAAAAAC-AACGGAATATCAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E252907" ref_strand="+" ref_description="SGN-E252907 [cLEG-16-N20]">
      <seq>aaacaaacgatgttggctatatttcacaaggcatttgctcatcctggctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaagattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagatattttgggggtattgctgctgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65280" stop="63033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64980" g_stop="64766" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="460" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63333" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="509" r_length="49" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E252907" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64980" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCT-CCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTT-GGGGTATTGCTGCTGATGGA</genome_strand>
        <mrna_strand>AAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTGGCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAAGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGATATTTTGGGGGTATTGCTGCTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E257052" ref_strand="+" ref_description="SGN-E257052 [cLEG-44-O6]">
      <seq>gaagctaaaaaaaacaaaaaaaaaatcaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65303" stop="63047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65003" g_stop="64766" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63777" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="482" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63380" g_stop="63347" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="516" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E257052" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65003" e_stop="64766"/>
          <exon e_start="64020" e_stop="63777"/>
          <exon e_start="63380" e_stop="63347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTA</genome_strand>
        <mrna_strand>GAAGCTAAAAAAAACAAAAAAAAAATCAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E202345" ref_strand="+" ref_description="SGN-E202345 [cLEC-6-L13]">
      <seq>tttcatcttgaagctaaaaaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65312" stop="63483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65012" g_stop="64766" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63783" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="485" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E202345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65012" e_stop="64766"/>
          <exon e_start="64020" e_stop="63783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTT</genome_strand>
        <mrna_strand>TTTCATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E255806" ref_strand="+" ref_description="SGN-E255806 [cLEG-35-I3]">
      <seq>aaaaaaacaaaaaaaaatcaaacgatgttggctatatttcacaagggggttgctcatcctcctgaagaattaaatcgtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgatcgtgctaagtgcacctccttgctcaatcacaaacaaaggtgttgatgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65296" stop="63484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64996" g_stop="64766" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.367" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63784" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="467" r_length="237" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E255806" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64996" e_stop="64766"/>
          <exon e_start="64020" e_stop="63784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGT</genome_strand>
        <mrna_strand>AAAAAAAC-AAAAAAAAATCAAACGATGTTGGCTATATTTCACAAGGGGGTTGCTCATCCTCCTGAAGAATTAAATCGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGATCGTGCTAAGTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E266449" ref_strand="+" ref_description="SGN-E266449 [cLEI-3-F22]">
      <seq>aaaacaaaaaaaaaaacaaacgatgttggctatgtttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65293" stop="63484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64993" g_stop="64766" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63784" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="465" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E266449" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64993" e_stop="64766"/>
          <exon e_start="64020" e_stop="63784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGT</genome_strand>
        <mrna_strand>AAAACAAAAAAAAAAACAAACGATGTTGGCTATGTTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E275101" ref_strand="+" ref_description="SGN-E275101 [cLEN-9-E14]">
      <seq>ttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65268" stop="63488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64968" g_stop="64766" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63788" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="436" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E275101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64968" e_stop="64766"/>
          <exon e_start="64020" e_stop="63788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTAT</genome_strand>
        <mrna_strand>TTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E397456" ref_strand="+" ref_description="SGN-E397456 [TUS-45-D10]">
      <seq>aaatatcaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattacatagtcctgcatcaaaaaaatgtttacttcctcaacaaacgctacaaaaattcgaatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcagaaacaaaggtatttttgtggttatgatgatatttactgtttgttcttggggagtttgaacaatttgtgtgcacaaatctaacaataagggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttatagacaggggaccttatccagctgatcaagttatgaaggattttgagggaagttttgcttttgttatctatgataggaaaactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65295" stop="63495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64995" g_stop="64766" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.367" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63795" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="456" r_length="226" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E397456" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64995" e_stop="64766"/>
          <exon e_start="64020" e_stop="63795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGA</genome_strand>
        <mrna_strand>AAATATCAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTACATAGTCCTGCATCAAAAAAATGTTTACTTCCTCAACAAACGCTACAAAAATTCGAATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCAGAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCTTGGGGAGTTTGAACAATTTGTGTGCACAAATCTAACAATAAGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTATAGACAGGGGACCTTATCCAGCTGATCAAGTTATGAAGGATTTTGAGGGAAGTTTTGCTTTTGTTATCTATGATAGGAAAACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E314485" ref_strand="+" ref_description="SGN-E314485 [cTOB-1-A11]">
      <seq>atcttgaagcttaaaaaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagntttgcttttgttatctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65308" stop="63508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65008" g_stop="64766" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63808" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="457" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E314485" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65008" e_stop="64766"/>
          <exon e_start="64020" e_stop="63808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGAAGC-TAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGA</genome_strand>
        <mrna_strand>ATCTTGAAGCTTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGNTTTGCTTTTGTTATCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E305371" ref_strand="+" ref_description="SGN-E305371 [cLEX-15-A21]">
      <seq>aaacaaacgatgtaggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaaagttattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65280" stop="63544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64980" g_stop="64766" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63844" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="393" r_length="178" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E305371" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64980" e_stop="64766"/>
          <exon e_start="64020" e_stop="63844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATC-AAGTTATTAA</genome_strand>
        <mrna_strand>AAACAAACGATGTAGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAAGTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E250732" ref_strand="+" ref_description="SGN-E250732 [cLEG-7-B13]">
      <seq>tggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65267" stop="63545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64967" g_stop="64766" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63845" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="378" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E250732" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64967" e_stop="64766"/>
          <exon e_start="64020" e_stop="63845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTA</genome_strand>
        <mrna_strand>TGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E273414" ref_strand="+" ref_description="SGN-E273414 [cLEN-3-E2]">
      <seq>gcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65112" stop="63548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64812" g_stop="64766" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63848" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="220" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E273414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64812" e_stop="64766"/>
          <exon e_start="64020" e_stop="63848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTA</genome_strand>
        <mrna_strand>GCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E258982" ref_strand="+" ref_description="SGN-E258982 [cLEG-41-J10]">
      <seq>cacctcttatgttacttttggagatgttgctgctctagcttttgttcctactaattgcacctacttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgcttgttcatggggagtacgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacacgacacttagagacaggggaccttatccagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65149" stop="63555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64849" g_stop="64766" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.367" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63855" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="250" r_length="166" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E258982" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64849" e_stop="64766"/>
          <exon e_start="64020" e_stop="63855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGAT</genome_strand>
        <mrna_strand>CACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTAGCTTTTGTTCCTACTAATTGCACCTACTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGCTTGTTCATGGGGAGTACGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACACGACACTTAGAGACAGGGGACCTTATCCAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E305206" ref_strand="+" ref_description="SGN-E305206 [cLEX-15-A19]">
      <seq>aaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65282" stop="63582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64982" g_stop="64766" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63882" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="356" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E305206" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64982" e_stop="64766"/>
          <exon e_start="64020" e_stop="63882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTT</genome_strand>
        <mrna_strand>AAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E200663" ref_strand="+" ref_description="SGN-E200663 [cLEC-9-B1]">
      <seq>aaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttactttcacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65282" stop="63616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64982" g_stop="64766" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63916" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="322" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E200663" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64982" e_stop="64766"/>
          <exon e_start="64020" e_stop="63916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGA</genome_strand>
        <mrna_strand>AAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTTCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E274000" ref_strand="+" ref_description="SGN-E274000 [cLEN-8-E8]">
      <seq>aaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttggggttatgatgatatttactggttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65294" stop="63642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64994" g_stop="64766" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63942" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="308" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-E274000" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64994" e_stop="64766"/>
          <exon e_start="64020" e_stop="63942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATAT</genome_strand>
        <mrna_strand>AAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGGGGTTATGATGATATTTACTGGTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E266711" ref_strand="-" ref_description="SGN-E266711 [cLEI-5-J6]">
      <seq>ttcattagtaaccatcttatcaatgaaattgattttgctacaatccatgcatacactgatcaatggttatctggacaaagtgatgaagcacaattggcgtggatggaaaagtggataagaagtcattgggaagatgcaagaaatatattgaagaaacctttagtgcttgctgaatttggaaagtctagtagatcaggtgaaggatcaagagatatatttatgagtagtgtgtacagaaatgtgtataatttggcaaaagaaggtggaacaatgggaggaagtttagtatggcaactaatggcacatggaatggagaattatgatgatggttattctattgttttgggactaaatccttcaactacacaaattatctcaaaccaagctcatatcatgactgctttggctcattctctcaatcatgagtgaagacatcataataatcaatttataatctatcatttttagtattattaatttgagatgatattaccaaacatgttcaagttgattaaacacaagaatgtaattgaataaattgttttagtaaaaaggaaagttatgttataaaaaaaaaaaaaaaaaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="67902" stop="69151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68202" g_stop="68266" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68267" i_stop="68347" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68348" g_stop="68850" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="568" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="590"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E266711" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266711" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68202" e_stop="68266"/>
          <exon e_start="68348" e_stop="68850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATGGTATGTAGAATTTACATGATCTTTCGAATCTGTACGTACATTTTCATAAGTTTAAATATTTATTTATATCGATGGTTATAGGTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTACAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTCTATTGTTTTGGGACTAAATCCTTCAACTACACAAATTATCTCAAACCAAGCTCATATCATGACTGCTTTGGCTCATTCTCTCAATCATGAGTGAAGACATCATAATAATCAATTTATAATCTATCATTTTTAGTATTATTAATTTGAGATGATATTACCAAACATGTTCAAGTTGATTAAACACAAGAATGTAATTGAATAAATTGTTTTAGTAAAAAGGAAAGTTATGTTAT</genome_strand>
        <mrna_strand>TTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATG.................................................................................GTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTACAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTCTATTGTTTTGGGACTAAATCCTTCAACTACACAAATTATCTCAAACCAAGCTCATATCATGACTGCTTTGGCTCATTCTCTCAATCATGAGTGAAGACATCATAATAATCAATTTATAATCTATCATTTTTAGTATTATTAATTTGAGATGATATTACCAAACATGTTCAAGTTGATTAAACACAAGAATGTAATTGAATAAATTGTTTTAGTAAAAAGGAAAGTTATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E266957" ref_strand="+" ref_description="SGN-E266957 [cLEI-7-H19]">
      <seq>aatgagcctcgcgatcaagctgactattcaggaaaaactgttaatggttgggttcaagaaatggcaagttttgtgaagtcattagacaacaaacacttgttagaggttggaatggagggattttatggtgattcaattcctgaaaggaagtcagttaatcctggttatcaagttggaacagatttcattagtaatcatcttatcaatgaaattgattttgctactatccatgcatacactgaccaatgggtgtctggacaaagcgatgatgcacagttggtgtggatggaaaagtggataacaagtcattgggaagatgcaagaaatatattaaagaaacctctagtgcttgctgaatttggaaagtctagtagaggtcaaggatcaagagatatatttatgagtagtgtatatagaaatgtgtacaatttggcaaaagaaggtggaacaatggcaggaagtttagtttggcaactaatggcacatggaatggagaattatgatgatggctattgcattgttttgggacaaaccccttcaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="75865" stop="79070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76165" g_stop="76209" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76210" i_stop="78219" i_length="2010">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78220" g_stop="78417" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="248" r_length="203" r_score="0.848"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78418" i_stop="78498" i_length="81">
            <donor d_prob="0.972" d_score="0.90"/>
            <acceptor a_prob="0.935" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78499" g_stop="78761" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="508" r_length="260" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E266957" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76165" e_stop="76209"/>
          <exon e_start="78220" e_stop="78417"/>
          <exon e_start="78499" e_stop="78761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTGTTGACACCCAATTTTGGCCTAACATTTTTAAAATTTCGTAGTTTTGGGCCACAATGCTAAGCTCGTCATTTAAGCCCTTTTGAGTCTTTATTTAGGTCAAAAAGGGAGGGAATTAATTTTTCAGAAAGAGAAGAGGGAGAAACCCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCCTTCCTCCTCTCCCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAGGTAATAATTTTGACAACCCTTTTTTTTTAGTCATTGTTTTGTTCATGCTTATACTAATTGTTGTATTATCTTTTGTATTGTTGAGTTGTCACACATAATTTTATTATTATTATCATTATTTGTGTATATTGTGATTTTGTCTCTTTTTTATATTGTTATTTTCCCTAATATTTATTTGATGAGTTATTTAGTCATAGTTAGAGTAATTGTATTCTACTTTAATTATATTTTGACATTTAGTTATTGTTGCTGCTAATATTAGTTTTGTGTGTTATCCGTTTTATGTTATATTAATGATGCCATGTTTACTTTTTTTTGTTTTATTTTTGTGTTAAGTTTTGTCAATTAGGTTGTTAATCTTTGCAAATGTTCAAAAAGCAAAAAATTTAAAAAAGAAAAATCAGCAATGCTATTTTGATTTTGGATGATACATAATGTTATATATATATATATTTATATATATATATATATATATTGCTATCGTTTAGACTTTGCAGCAATTATTTTTTTTTATATATCTTCATTACTTATTGGTTGTTATCTTGTTTTCAATGGGGTTTACATTACTTTAATATGGGGTAATTTTTATTATCTTTTATGCTTCTTTTATTTACTAAATTTTTGTTTGATGCTATACTAGTTTATATTATAAATTGTTAAAGGGCCTATGAAAAATCTATCCGTCGGGTTTAGAGGCCTCCCCATTTTAAAAGACGGAACTTTAATTCAAGTTTATATATTCTAAAAATTGTTGGAATTGGCCGATGAAGAAATTATCGTCGATTTCCAAGGCCTCCCATGTTGATAAGACGGATTTTTATTTTTAATTATTATTTGCTTTATTCAATTTTAATCATATTTATTCTTTACTAACATTTTTACCAAGTGTGTTTACAGGTACCCGGAGGTGCTTTTCCTTTTATTTCATTATTGTAAATATTGACGTTAGGCAAACCTTATGCCGATAATTATTATTTTATTTTATTGTGCATATTAAATGTTTATTATACTTGTACATTATTTTATATTTTTCCTCGATTTGAAAAAAAATGAATTCAGTCGGGAACCACATTTGTGGATTCCGAAGGGTGCCTAAACCCTTCCCTTCGGAATAACTTGAACCCCTTACCTAGAATCAATTTGGTTTCGTAGATAAATATTTGGTTTCCTAGTTTTCCTAAAATTAGGTGGCGACTTTTTTTTTTTTTAAAACTCATTTATTTTTAAAATTTTGTTACAATTAAATCAATTAATTATTTTTCGAGTTGCCGCGACGTTTCGCCCTATTTCGAAAGAGTAGGGATGTAAACAACTGTTAATATAAGTTCCACATTTAAGTTTAATTTTAGCAATATTAAATCTGTGATTGATGTTTTTAATGAATATTGTTATAGGGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAAC-AA-A-TTG---GAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTCGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATGGTACGTAGTTTTTACATGATCTTTCGAATGTGTACGTACATTTTTATAAGTTTAAATATTTATTTATATCGATAGTTACAGGGTATCTGAACAAAGTGATGAAGCACAATTGGTGTGGATGGAGAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATG</genome_strand>
        <mrna_strand>AATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGGTTCAAGAAATGGCAAGTTTTGTGAAGTCATTAGACAACAAACACTTGTTAGAGGTTGGAATGGAGGGATTTTATGGTGATTCAATTCCTGAAAGGAAGTCAGTTAATCCTGGTTATCAAGTTGGAACAGATTTCATTAGTAATCATCTTATCAATGAAATTGA-TTTTGCTACTATCCATGCATACACTGACCAATG.................................................................................GGTGTCTGGACAAAGCGATGATGCACAGTTGGTGTGGATGGAAAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTAAAGAAACCTCTAGTGCTTGCTGAATTTGGAAAGTCTAGTAG---AGGTCAAGGATCAAGAGATATATTTATGAGTAGTGTATATAGAAATGTGTACAATTTGGCAAAAGAAGGTGGAACAATGGCAGGAAGTTTAGTTTGGCAACTAATGGCACATGGAATGGAGAATTATGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E700553" ref_strand="+" ref_description="SGN-E700553 [FA13BG11]">
      <seq>agagagagaagagggagaaacccttcccccctctccaagccgcctccttcttctcccctctccatctcctcttctctcttcctcccaaaccgttcctcctctacctcttttccgtcagcccctctcaccctttccctccctctttcccgtttctcccccttcctcttcctctcctctcttctatctcctccattctctctttttccggcaaagcagcgacaacaacccagcagcagctcagacagcctacaacaacagctccaacagccggcgagccaagcagcgccgccctctccctcttctccggcaaagcagcgacagcaaccggcaaaagctccggctgaagcagcaacaacaaacgacggaaatagcagcgccaccactcgcatacttatccggtgaagacaccatcagcgtcagcagctccaggaggcgagcaccacagatgatatcaactccgaccttgttagagaaaacattcagatctgtccaaaagggttggttgggttcaagaaatggcgagttttgtgaagtcattagataacaaattggaagttgaaattgaaggattttatggtgattcaattcctgaaaggaaatcagtgaatcctggttatcaagttggaacaaatttctttagtaaccagcttatcaatgaaattgatttttgctacaatccgttcatacattgaccaatggttatctggacaaagtgatgaagcacaattggcgtggatggaaaagtggataacaagtcattgggaagatgcaagaaatatattgaagaaacctttagtgcttgctgaaatttggaaagtctagtagatcaggtgaaggatcaagagatatatttatgagtagtgtgtatagaaatgtgtataatttggcaaaaaaaggtggaacaatgggaaggaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76030" stop="79017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76330" g_stop="76825" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76826" i_stop="77487" i_length="662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77488" g_stop="77492" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="500" r_length="4" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77493" i_stop="78219" i_length="727">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78220" g_stop="78417" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="698" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78418" i_stop="78498" i_length="81">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78499" g_stop="78717" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="919" r_length="221" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E700553" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>918</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76330" e_stop="76825"/>
          <exon e_start="77488" e_stop="77492"/>
          <exon e_start="78220" e_stop="78417"/>
          <exon e_start="78499" e_stop="78717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAAGAGGGAGAAACCCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCCTTCCTCCTCTCCCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAGGTAATAATTTTGACAACCCTTTTTTTTTAGTCATTGTTTTGTTCATGCTTATACTAATTGTTGTATTATCTTTTGTATTGTTGAGTTGTCACACATAATTTTATTATTATTATCATTATTTGTGTATATTGTGATTTTGTCTCTTTTTTATATTGTTATTTTCCCTAATATTTATTTGATGAGTTATTTAGTCATAGTTAGAGTAATTGTATTCTACTTTAATTATATTTTGACATTTAGTTATTGTTGCTGCTAATATTAGTTTTGTGTGTTATCCGTTTTATGTTATATTAATGATGCCATGTTTACTTTTTTTTGTTTTATTTTTGTGTTAAGTTTTGTCAATTAGGTTGTTAATCTTTGCAAATGTTCAAAAAGCAAAAAATTTAAAAAAGAAAAATCAGCAATGCTATTTTGATTTTGGATGATACATAATGTTATATATATATATATTTATATATATATATATATATATTGCTATCGTTTAGACTTTGCAGCAATTATTTTTTTTTATATATCTTCATTACTTATTGGTTGTTATCTTGTTTTCAATGGGGTTTACATTACTTTAATATGGGGTAATTTTTATTATCTTTTATGCTTCTTTTATTTACTAAATTTTTGTTTGATGCTATACTAGTTTATATTATAAATTGTTAAAGGGCCTATGAAAAATCTATCCGTCGGGTTTAGAGGCCTCCCCATTTTAAAAGACGGAACTTTAATTCAAGTTTATATATTCTAAAAATTGTTGGAATTGGCCGATGAAGAAATTATCGTCGATTTCCAAGGCCTCCCATGTTGATAAGACGGATTTTTATTTTTAATTATTATTTGCTTTATTCAATTTTAATCATATTTATTCTTTACTAACATTTTTACCAAGTGTGTTTACAGGTACCCGGAGGTGCTTTTCCTTTTATTTCATTATTGTAAATATTGACGTTAGGCAAACCTTATGCCGATAATTATTATTTTATTTTATTGTGCATATTAAATGTTTATTATACTTGTACATTATTTTATATTTTTCCTCGATTTGAAAAAAAATGAATTCAGTCGGGAACCACATTTGTGGATTCCGAAGGGTGCCTAAACCCTTCCCTTCGGAATAACTTGAACCCCTTACCTAGAATCAATTTGGTTTCGTAGATAAATATTTGGTTTCCTAGTTTTCCTAAAATTAGGTGGCGACTTTTTTTTTTTTTAAAACTCATTTATTTTTAAAATTTTGTTACAATTAAATCAATTAATTATTTTTCGAGTTGCCGCGACGTTTCGCCCTATTTCGAAAGAGTAGGGATGTAAACAACTGTTAATATAAGTTCCACATTTAAGTTTAATTTTAGCAATATTAAATCTGTGATTGATGTTTTTAATGAATATTGTTATAGGGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTCGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATGGTACGTAGTTTTTACATGATCTTTCGAATGTGTACGTACATTTTTATAAGTTTAAATATTTATTTATATCGATAGTTACAGGGTATCTGAACAAAGTGATGAAGCACAATTGGTGTGGATGGAGAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTG-AATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGG-AGGAAGTTT</genome_strand>
        <mrna_strand>AGAGAGAGAAGAGGGAGAAACCCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCGTTCCTCCTCTACCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTCAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-TT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTGGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATG.................................................................................GTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAAAAGGTGGAACAATGGGAAGGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E730588" ref_strand="+" ref_description="SGN-E730588 [LA24CD02]">
      <seq>cccataaaggcagaaagagaagagggagaaacccttcccccctctctaagccgcctccttcttctcccctctccatctcctcttctctcttcctcccaaaccgttcctcctctacctcttttccgtcagcccctctcaccctttccctccctctttcccgtttctcccccttcctcttcctctcctctcttctatctcctccattctctctttttccggcaaagcagcgacaacaacccagcagcagctgagacagcctacaacaacagctctaacagccggcgagccaagcagcgccgccctctccctcttctccggcaaagcagcgacagcaaccggcaaaagctccggctgaagcagcaacaacaaacgacggaaatagcagcgccaccactcgcatacttatccggtgaagacaccatcagcgtcagcagctccaggaggcgagcaccacagatgatatcaactccgaccttgttagagaaaacattcagatctgtccaaaagggttggttgggttcaagaaatggcgagttttgtgaagtcattagataacaaattggaagttgaaattgaaggattttatggtgattcaattcctgaaaggaaatcagtgaatcctggttatcaagttggaacaaatttctttagtaaccagcttatcaatgaaattgatttttgctacaatccgttcatacattgaccaatggttatctggacaaagtgatgaagcacaattggcgtggatggaaaagtggataacaagtcattgggaagatgcaagaaatatattgaagaaacctttagtgcttgctgaatttggaaagtctagtagatcaggtgaaggatcaagagatatatttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76029" stop="78955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76332" g_stop="76825" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="507" r_length="494" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76826" i_stop="77487" i_length="662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77488" g_stop="77492" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="511" r_length="4" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77493" i_stop="78219" i_length="727">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78220" g_stop="78417" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="709" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78418" i_stop="78498" i_length="81">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78499" g_stop="78655" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="866" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E730588" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76332" e_stop="76825"/>
          <exon e_start="77488" e_stop="77492"/>
          <exon e_start="78220" e_stop="78417"/>
          <exon e_start="78499" e_stop="78655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAAGAGGGAGAAACCCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCCTTCCTCCTCTCCCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAGGTAATAATTTTGACAACCCTTTTTTTTTAGTCATTGTTTTGTTCATGCTTATACTAATTGTTGTATTATCTTTTGTATTGTTGAGTTGTCACACATAATTTTATTATTATTATCATTATTTGTGTATATTGTGATTTTGTCTCTTTTTTATATTGTTATTTTCCCTAATATTTATTTGATGAGTTATTTAGTCATAGTTAGAGTAATTGTATTCTACTTTAATTATATTTTGACATTTAGTTATTGTTGCTGCTAATATTAGTTTTGTGTGTTATCCGTTTTATGTTATATTAATGATGCCATGTTTACTTTTTTTTGTTTTATTTTTGTGTTAAGTTTTGTCAATTAGGTTGTTAATCTTTGCAAATGTTCAAAAAGCAAAAAATTTAAAAAAGAAAAATCAGCAATGCTATTTTGATTTTGGATGATACATAATGTTATATATATATATATTTATATATATATATATATATATTGCTATCGTTTAGACTTTGCAGCAATTATTTTTTTTTATATATCTTCATTACTTATTGGTTGTTATCTTGTTTTCAATGGGGTTTACATTACTTTAATATGGGGTAATTTTTATTATCTTTTATGCTTCTTTTATTTACTAAATTTTTGTTTGATGCTATACTAGTTTATATTATAAATTGTTAAAGGGCCTATGAAAAATCTATCCGTCGGGTTTAGAGGCCTCCCCATTTTAAAAGACGGAACTTTAATTCAAGTTTATATATTCTAAAAATTGTTGGAATTGGCCGATGAAGAAATTATCGTCGATTTCCAAGGCCTCCCATGTTGATAAGACGGATTTTTATTTTTAATTATTATTTGCTTTATTCAATTTTAATCATATTTATTCTTTACTAACATTTTTACCAAGTGTGTTTACAGGTACCCGGAGGTGCTTTTCCTTTTATTTCATTATTGTAAATATTGACGTTAGGCAAACCTTATGCCGATAATTATTATTTTATTTTATTGTGCATATTAAATGTTTATTATACTTGTACATTATTTTATATTTTTCCTCGATTTGAAAAAAAATGAATTCAGTCGGGAACCACATTTGTGGATTCCGAAGGGTGCCTAAACCCTTCCCTTCGGAATAACTTGAACCCCTTACCTAGAATCAATTTGGTTTCGTAGATAAATATTTGGTTTCCTAGTTTTCCTAAAATTAGGTGGCGACTTTTTTTTTTTTTAAAACTCATTTATTTTTAAAATTTTGTTACAATTAAATCAATTAATTATTTTTCGAGTTGCCGCGACGTTTCGCCCTATTTCGAAAGAGTAGGGATGTAAACAACTGTTAATATAAGTTCCACATTTAAGTTTAATTTTAGCAATATTAAATCTGTGATTGATGTTTTTAATGAATATTGTTATAGGGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTCGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATGGTACGTAGTTTTTACATGATCTTTCGAATGTGTACGTACATTTTTATAAGTTTAAATATTTATTTATATCGATAGTTACAGGGTATCTGAACAAAGTGATGAAGCACAATTGGTGTGGATGGAGAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATG</genome_strand>
        <mrna_strand>AAAGAGAAGAGGGAGAAACCCTTCCCCCCTCTCTAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCGTTCCTCCTCTACCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCTAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-TT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTGGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATG.................................................................................GTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E708550" ref_strand="+" ref_description="SGN-E708550 [FA36AC11]">
      <seq>aactcttcccccctctccaagccgcctccttcttctcccctctccatctcctcttctctcttcctcccaaaccgttcctcctctacctcttttccgtcagcccctctcaccctttccctccctctttcccgtttctcccccttcctcttcctctcctctcttctatctcctccattctctctttttccggcaaagcagcgacaacaacccagcagcagctgagacagcctacaacaacagctccaacagccggcgagccaagcagcgccgccctctccctcttctccggcaaagcagcgacagcaaccggcaaaagctccggctgaagcagcaacaacaaacgacggaaatagcagcgccaccactcgcatacttatccggtgaagacaccatcagcgtcagcagctccaggaggcgagcaccacagatgatatcaactccgaccttgttagagaaaacattcagatctgtccaaaagggttggttgggttcaagaaatggcgagttttgtgaagtcattagataacaaattggaagttgaaattgaaggattttatggtgattcaattcctgaaaggaaatcagtgaatcctggttatcaagttggaacaaatttctttagtaaccagcttatcaatgaaattgatttttgctacaatccgttcatacattgaccaatggttatctggacaaagtgatgaagcacaattggcgtggatggaaaagtggataacaagtcattgggaagatgcaagaaatatattgaagaaacctttagtgcttgctgaatttggaaagtctagtagatcaggtgaaggatcaagagatatatttatgagtagtgtgtatagaaatgtgtataatttggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76048" stop="78990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76348" g_stop="76825" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76826" i_stop="77487" i_length="662">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77488" g_stop="77492" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="482" r_length="4" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77493" i_stop="78219" i_length="727">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78220" g_stop="78417" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="680" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78418" i_stop="78498" i_length="81">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78499" g_stop="78690" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="872" r_length="192" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E708550" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76348" e_stop="76825"/>
          <exon e_start="77488" e_stop="77492"/>
          <exon e_start="78220" e_stop="78417"/>
          <exon e_start="78499" e_stop="78690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCCTTCCTCCTCTCCCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAGGTAATAATTTTGACAACCCTTTTTTTTTAGTCATTGTTTTGTTCATGCTTATACTAATTGTTGTATTATCTTTTGTATTGTTGAGTTGTCACACATAATTTTATTATTATTATCATTATTTGTGTATATTGTGATTTTGTCTCTTTTTTATATTGTTATTTTCCCTAATATTTATTTGATGAGTTATTTAGTCATAGTTAGAGTAATTGTATTCTACTTTAATTATATTTTGACATTTAGTTATTGTTGCTGCTAATATTAGTTTTGTGTGTTATCCGTTTTATGTTATATTAATGATGCCATGTTTACTTTTTTTTGTTTTATTTTTGTGTTAAGTTTTGTCAATTAGGTTGTTAATCTTTGCAAATGTTCAAAAAGCAAAAAATTTAAAAAAGAAAAATCAGCAATGCTATTTTGATTTTGGATGATACATAATGTTATATATATATATATTTATATATATATATATATATATTGCTATCGTTTAGACTTTGCAGCAATTATTTTTTTTTATATATCTTCATTACTTATTGGTTGTTATCTTGTTTTCAATGGGGTTTACATTACTTTAATATGGGGTAATTTTTATTATCTTTTATGCTTCTTTTATTTACTAAATTTTTGTTTGATGCTATACTAGTTTATATTATAAATTGTTAAAGGGCCTATGAAAAATCTATCCGTCGGGTTTAGAGGCCTCCCCATTTTAAAAGACGGAACTTTAATTCAAGTTTATATATTCTAAAAATTGTTGGAATTGGCCGATGAAGAAATTATCGTCGATTTCCAAGGCCTCCCATGTTGATAAGACGGATTTTTATTTTTAATTATTATTTGCTTTATTCAATTTTAATCATATTTATTCTTTACTAACATTTTTACCAAGTGTGTTTACAGGTACCCGGAGGTGCTTTTCCTTTTATTTCATTATTGTAAATATTGACGTTAGGCAAACCTTATGCCGATAATTATTATTTTATTTTATTGTGCATATTAAATGTTTATTATACTTGTACATTATTTTATATTTTTCCTCGATTTGAAAAAAAATGAATTCAGTCGGGAACCACATTTGTGGATTCCGAAGGGTGCCTAAACCCTTCCCTTCGGAATAACTTGAACCCCTTACCTAGAATCAATTTGGTTTCGTAGATAAATATTTGGTTTCCTAGTTTTCCTAAAATTAGGTGGCGACTTTTTTTTTTTTTAAAACTCATTTATTTTTAAAATTTTGTTACAATTAAATCAATTAATTATTTTTCGAGTTGCCGCGACGTTTCGCCCTATTTCGAAAGAGTAGGGATGTAAACAACTGTTAATATAAGTTCCACATTTAAGTTTAATTTTAGCAATATTAAATCTGTGATTGATGTTTTTAATGAATATTGTTATAGGGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTCGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATGGTACGTAGTTTTTACATGATCTTTCGAATGTGTACGTACATTTTTATAAGTTTAAATATTTATTTATATCGATAGTTACAGGGTATCTGAACAAAGTGATGAAGCACAATTGGTGTGGATGGAGAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAA</genome_strand>
        <mrna_strand>AACTCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCGTTCCTCCTCTACCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-TT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTGGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATG.................................................................................GTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OHgBKb/sgn_ests_tomato" ref_id="SGN-E225197" ref_strand="-" ref_description="SGN-E225197 [cLEL-17-L18]">
      <seq>acaagtcattgggaagatgcaagaaatatattgaagaaacctttagtgcttgctgaatttggaaagtctagtagatcaggtgaaggatcaagagatatatttatgagtagtgtgtatagaaatgtgtataatttggcaaaagaaggtggaacaatgggaggaagtttagtatggcaactaatggcacatggaatggagaattatgatgatggttattgaagaaataggcattacatgacacaagggcaaattagtcattactgtttaatcaagttggttaaagttgttaagtgtagttagttagaaatttgttaggaagttagttagtaaaacagtatatgtactgcatcaagttacaatacaatgtattcagtttgtattcttcttttttacaaaataaacttcttctctcttttccttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-WnWxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="78251" stop="79270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78551" g_stop="78970" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="443"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-E225197" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225197" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78551" e_stop="78970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTGAAGAAATAGGCATTACATGACACAAGGGCAAATTAGTCATTACTGTTTAATCAAGTTGGTTAAAGTTGTTAAGTGTAGTTAGTTAGAAATTTGTTAGGAAGTTAGTTAGTAAAACAGTATATGTACTGCATCAAGTTACAATACAATGTATTCAGTTTGTATTCTTCTTTTTTACAAAATAAACTTCTTCTCTCTTTTCCTT</genome_strand>
        <mrna_strand>ACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTGAAGAAATAGGCATTACATGACACAAGGGCAAATTAGTCATTACTGTTTAATCAAGTTGGTTAAAGTTGTTAAGTGTAGTTAGTTAGAAATTTGTTAGGAAGTTAGTTAGTAAAACAGTATATGTACTGCATCAAGTTACAATACAATGTATTCAGTTTGTATTCTTCTTTTTTACAAAATAAACTTCTTCTCTCTTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>158</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3649" PGL_stop="4075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3649" e_stop="4075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="3649" e_stop="4075" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3649" stop="3972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3649" stop="3955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3649" stop="3801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3650" stop="4075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTATATAATTCGTTGACCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAAATATATTTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACATAATTTATACACTTATGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGACACGTCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCT</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  Y  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  I  *  F  V  D  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  K  Y  I  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  H  N  L  Y  T  Y  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  T  R  L  T  N  F  S  *  R  L  L  W  S  T  I  K  S  N  P  S  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  M  L  Y  K  V  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  T  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  N  I  F  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  I  I  Y  T  L  M  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  H  V  *  Q  T  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  I  H  L  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  Y  I  I  R  *  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  *  F  I  H  L  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  D  T  S  D  K  L  *  L  T  F  A  M  E  H  N  *  I  K  P  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3838" stop="4038"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRKYIFCMCIYNFLSLYTKQKHNLYTYVYKAREASENGEWRARFLGETRLTNFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14853" PGL_stop="15641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14853" e_stop="15208"/>
            <exon e_start="15288" e_stop="15351"/>
            <exon e_start="15558" e_stop="15641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.805" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14853" e_stop="15208" e_length="356"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15209" i_stop="15287" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15288" e_stop="15351" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.805" acc_prob="0.988">
            <gDNA_intron_boundary i_start="15352" i_stop="15557" i_length="206"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15558" e_stop="15641" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14853" stop="15208"/>
              <exon start="15288" stop="15351"/>
              <exon start="15558" stop="15641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330995" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGGTTTATGCTTGCAACAGGTGATATGATCTCTCTTCCACTAGAACAGGTTCATCCAGGGTATATTATCCCACCAGATACTATGAACTATTTTCTTCCAGAACTGCTTTCTACGGGGCCTGTTCTTGCACCAGGTGCTATGCACTATTTCCATCAGGAAATGGATCATGAACTCTGGACTCATGGTCCGCATAACAGTGCAAGTCTATCACTCCAATGCGAATCAGCTCCTAGTAAGGAACAACATGGAAATTTAGGTGAAAGCCTGAAGAATTTCCGTCTTTTCAAGAAATTTGATACTGTTCAAGATCATTCAGGCCATTACTTTTCTGGACTTGCATCTCATGACAACCTG : GCCTCTAAGAGTTGTGCCAAGAGGATACTGGAGGAGTGGAAGATACTGGAGAAAGATTTACCTG : ATACCATATTTGTCCGAGTGTATGAAACAAGGATGGATCTGTTGAGAGCAGTGATTATTGGAGCTGATGGAACTCCTTACCATG</gDNA_template>
            <first_frame> Q  G  L  C  L  Q  Q  V  I  *  S  L  F  H  *  N  R  F  I  Q  G  I  L  S  H  Q  I  L  *  T  I  F  F  Q  N  C  F  L  R  G  L  F  L  H  Q  V  L  C  T  I  S  I  R  K  W  I  M  N  S  G  L  M  V  R  I  T  V  Q  V  Y  H  S  N  A  N  Q  L  L  V  R  N  N  M  E  I  *  V  K  A  *  R  I  S  V  F  S  R  N  L  I  L  F  K  I  I  Q  A  I  T  F  L  D  L  H  L  M  T  T  W :   P  L  R  V  V  P  R  G  Y  W  R  S  G  R  Y  W  R  K  I  Y  L  :  I  P  Y  L  S  E  C  M  K  Q  G  W  I  C  *  E  Q  *  L  L  E  L  M  E  L  L  T  M </first_frame>
            <second_frame>  R  V  Y  A  C  N  R  *  Y  D  L  S  S  T  R  T  G  S  S  R  V  Y  Y  P  T  R  Y  Y  E  L  F  S  S  R  T  A  F  Y  G  A  C  S  C  T  R  C  Y  A  L  F  P  S  G  N  G  S  *  T  L  D  S  W  S  A  *  Q  C  K  S  I  T  P  M  R  I  S  S  *  *  G  T  T  W  K  F  R  *  K  P  E  E  F  P  S  F  Q  E  I  *  Y  C  S  R  S  F  R  P  L  L  F  W  T  C  I  S  *  Q  P   : G  L  *  E  L  C  Q  E  D  T  G  G  V  E  D  T  G  E  R  F  T  * :   Y  H  I  C  P  S  V  *  N  K  D  G  S  V  E  S  S  D  Y  W  S  *  W  N  S  L  P   </second_frame>
            <third_frame>   G  F  M  L  A  T  G  D  M  I  S  L  P  L  E  Q  V  H  P  G  Y  I  I  P  P  D  T  M  N  Y  F  L  P  E  L  L  S  T  G  P  V  L  A  P  G  A  M  H  Y  F  H  Q  E  M  D  H  E  L  W  T  H  G  P  H  N  S  A  S  L  S  L  Q  C  E  S  A  P  S  K  E  Q  H  G  N  L  G  E  S  L  K  N  F  R  L  F  K  K  F  D  T  V  Q  D  H  S  G  H  Y  F  S  G  L  A  S  H  D  N  L  :  A  S  K  S  C  A  K  R  I  L  E  E  W  K  I  L  E  K  D  L  P   : D  T  I  F  V  R  V  Y  E  T  R  M  D  L  L  R  A  V  I  I  G  A  D  G  T  P  Y  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14855" stop="15208"/>
                    <exon start="15288" stop="15351"/>
                    <exon start="15558" stop="15640"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFMLATGDMISLPLEQVHPGYIIPPDTMNYFLPELLSTGPVLAPGAMHYFHQEMDHELWTHGPHNSASLSLQCESAPSKEQHGNLGESLKNFRLFKKFDTVQDHSGHYFSGLASHDNLASKSCAKRILEEWKILEKDLPDTIFVRVYETRMDLLRAVIIGADGTPYH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="15988" PGL_stop="16884"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15988" e_stop="16153"/>
            <exon e_start="16521" e_stop="16884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15988" e_stop="16153" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.979">
            <gDNA_intron_boundary i_start="16154" i_stop="16520" i_length="367"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16521" e_stop="16884" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15988" stop="16153"/>
              <exon start="16521" stop="16884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCATACAAGGGCTAATATTGAACGCTAAGCCCTATTTCAATGAGCCTGGATATGCCAGGATGAATGGCTCAGCCTCAGGGGAACGAAACTCACTGCGCTATAACGAGAACACTTGCATTTTTAATCTCAAGACAATGGTCTATTGTATGAGGCGACCACCACAG : CACTTTGAGGATTTTGTCATAGGGCATTACTTTCAAAGCTGTCAAGATATTCTTGTGGCATGTAAAGCATATATGGAAGGTGCTCGTGTGGGTAGCCTTGTCAGAGGGTGTGTTCTCGGCGATGGTGGCAAGGGTGGTGACAAAGGTGGTTCTCGGAGTTTCAAGGCCATGTTGGCGGGATTCATCGGGGTACTTGTAGAGGCGTTCAAAAAGATTGGTTGCGAGGATTGTGATAAGTTTCTTCCCTTGGCAGAAAAAGCGTCAACCAGAGCAACTCCAGTTAAGATAGACTGATAGAGACTGCTGACCATATGTAGATTTCAGTACTGTTATACACCTAATGTTGACAAACTAGTTTTCAGAC</gDNA_template>
            <first_frame> F  H  T  R  A  N  I  E  R  *  A  L  F  Q  *  A  W  I  C  Q  D  E  W  L  S  L  R  G  T  K  L  T  A  L  *  R  E  H  L  H  F  *  S  Q  D  N  G  L  L  Y  E  A  T  T  T   : A  L  *  G  F  C  H  R  A  L  L  S  K  L  S  R  Y  S  C  G  M  *  S  I  Y  G  R  C  S  C  G  *  P  C  Q  R  V  C  S  R  R  W  W  Q  G  W  *  Q  R  W  F  S  E  F  Q  G  H  V  G  G  I  H  R  G  T  C  R  G  V  Q  K  D  W  L  R  G  L  *  *  V  S  S  L  G  R  K  S  V  N  Q  S  N  S  S  *  D  R  L  I  E  T  A  D  H  M  *  I  S  V  L  L  Y  T  *  C  *  Q  T  S  F  Q   </first_frame>
            <second_frame>  S  I  Q  G  L  I  L  N  A  K  P  Y  F  N  E  P  G  Y  A  R  M  N  G  S  A  S  G  E  R  N  S  L  R  Y  N  E  N  T  C  I  F  N  L  K  T  M  V  Y  C  M  R  R  P  P  Q  :  H  F  E  D  F  V  I  G  H  Y  F  Q  S  C  Q  D  I  L  V  A  C  K  A  Y  M  E  G  A  R  V  G  S  L  V  R  G  C  V  L  G  D  G  G  K  G  G  D  K  G  G  S  R  S  F  K  A  M  L  A  G  F  I  G  V  L  V  E  A  F  K  K  I  G  C  E  D  C  D  K  F  L  P  L  A  E  K  A  S  T  R  A  T  P  V  K  I  D  *  *  R  L  L  T  I  C  R  F  Q  Y  C  Y  T  P  N  V  D  K  L  V  F  R  </second_frame>
            <third_frame>   P  Y  K  G  *  Y  *  T  L  S  P  I  S  M  S  L  D  M  P  G  *  M  A  Q  P  Q  G  N  E  T  H  C  A  I  T  R  T  L  A  F  L  I  S  R  Q  W  S  I  V  *  G  D  H  H  S :   T  L  R  I  L  S  *  G  I  T  F  K  A  V  K  I  F  L  W  H  V  K  H  I  W  K  V  L  V  W  V  A  L  S  E  G  V  F  S  A  M  V  A  R  V  V  T  K  V  V  L  G  V  S  R  P  C  W  R  D  S  S  G  Y  L  *  R  R  S  K  R  L  V  A  R  I  V  I  S  F  F  P  W  Q  K  K  R  Q  P  E  Q  L  Q  L  R  *  T  D  R  D  C  *  P  Y  V  D  F  S  T  V  I  H  L  M  L  T  N  *  F  S  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15989" stop="16153"/>
                    <exon start="16521" stop="16814"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIQGLILNAKPYFNEPGYARMNGSASGERNSLRYNENTCIFNLKTMVYCMRRPPQHFEDFVIGHYFQSCQDILVACKAYMEGARVGSLVRGCVLGDGGKGGDKGGSRSFKAMLAGFIGVLVEAFKKIGCEDCDKFLPLAEKASTRATPVKID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20269" PGL_stop="23407"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20269" e_stop="20550"/>
            <exon e_start="22237" e_stop="22751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20269" e_stop="20550" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="22237" e_stop="22751" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20269" stop="20550"/>
              <exon start="22237" stop="22674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20286" stop="20550"/>
              <exon start="22237" stop="22261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20287" stop="20550"/>
              <exon start="22237" stop="22516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20287" stop="20550"/>
              <exon start="22237" stop="22374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20291" stop="20550"/>
              <exon start="22237" stop="22673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20291" stop="20550"/>
              <exon start="22237" stop="22652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541299" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20303" stop="20550"/>
              <exon start="22237" stop="22680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20304" stop="20550"/>
              <exon start="22237" stop="22681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20317" stop="20550"/>
              <exon start="22237" stop="22269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20335" stop="20550"/>
              <exon start="22237" stop="22516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20381" stop="20550"/>
              <exon start="22237" stop="22269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20384" stop="20550"/>
              <exon start="22237" stop="22662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280259" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20393" stop="20550"/>
              <exon start="22237" stop="22574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22270" stop="22751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22288" stop="22644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22312" stop="22730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCAAAAAAGCCCAATCAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG : TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTCATTATGTTTGCTTCAATGTTTCTGAAGTTCAAATTTCACTGGTAAAATTGTCTCTATATTGGCTTCATTTCACCAT</gDNA_template>
            <first_frame> L  S  K  K  P  N  Q  I  L  L  S  H  T  N  L  S  T  L  L  W  L  V  C  W  K  L  S  Q  F  L  G  P  P  P  P  L  L  R  R  R  C  L  L  F  P  V  A  G  L  L  L  N  S  L  Y  S  M  V  L  R  S  S  R  L  V  H  Q  Y  P  L  A  H  L  Q  N  L  F  P  V  E  E  E  E  S  S  V  R  L  R  I  L  L  F  *  :  C  L  V  L  M  I  N  H  G  R  L  L  *  S  G  L  S  Y  L  F  W  L  N  F  G  L  H  G  V  V  H  A  E  *  F  T  R  L  L  M  N  Y  H  R  N  L  L  T  S  L  N  S  S  R  *  T  R  M  K  V  L  A  S  R  P  D  M  G  F  E  V  S  Q  P  S  *  F  S  R  M  E  R  R  K  I  Q  S  L  V  Q  S  L  K  Q  R  *  Q  P  A  *  K  N  S  C  K  M  V  H  M  *  S  S  F  I  F  P  F  F  C  L  L  H  C  K  N  Y  N  L  I  N  L  R  F  V  C  I  V  V  L  Y  A  M  F  L  L  C  H  Y  V  C  F  N  V  S  E  V  Q  I  S  L  V  K  L  S  L  Y  W  L  H  F  T   </first_frame>
            <second_frame>  S  Q  K  S  P  I  K  F  Y  S  A  T  Q  I  Y  Q  P  C  Y  G  W  F  A  G  N  Y  R  S  S  S  G  R  R  R  R  C  F  A  V  V  V  S  C  F  R  S  P  V  F  C  *  I  L  S  I  Q  W  S  *  D  P  V  D  S  F  I  S  I  L  *  L  I  Y  K  I  C  S  Q  *  R  R  K  N  R  L  *  G  S  G  Y  C  C  S  S :   A  W  C  *  *  S  I  M  G  D  S  C  N  R  V  *  V  T  C  S  G  *  I  L  G  S  M  V  W  S  M  Q  N  D  S  P  G  Y  *  *  T  I  T  G  I  C  *  Q  V  *  I  L  Q  G  E  H  G  *  K  S  W  H  R  D  Q  I  W  D  S  K  Y  P  N  R  H  D  F  Q  G  W  R  E  E  R  Y  S  H  W  C  S  P  *  N  N  V  D  S  L  H  R  K  I  L  V  K  W  Y  I  C  R  A  L  L  Y  F  P  S  F  A  F  C  T  A  R  T  I  T  *  *  I  *  D  S  S  V  *  L  C  Y  M  L  C  F  F  F  V  I  M  F  A  S  M  F  L  K  F  K  F  H  W  *  N  C  L  Y  I  G  F  I  S  P  </second_frame>
            <third_frame>   L  K  K  A  Q  S  N  S  T  Q  P  H  K  F  I  N  P  A  M  A  G  L  L  E  T  I  A  V  P  R  A  A  A  A  A  A  S  P  S  L  S  P  V  S  G  R  R  S  S  V  K  F  S  L  F  N  G  L  K  I  Q  S  T  R  S  S  V  S  F  S  S  F  T  K  S  V  P  S  R  G  G  R  I  V  C  E  A  Q  D  T  A  V  L   : V  P  G  V  N  D  Q  S  W  E  T  L  V  I  G  S  K  L  P  V  L  V  E  F  W  A  P  W  C  G  P  C  R  M  I  H  P  V  I  D  E  L  S  Q  E  F  A  D  K  F  K  F  F  K  V  N  T  D  E  S  P  G  I  A  T  R  Y  G  I  R  S  I  P  T  V  M  I  F  K  D  G  E  K  K  D  T  V  I  G  A  V  P  K  T  T  L  T  A  C  I  E  K  F  L  *  N  G  T  Y  V  E  L  F  Y  I  S  L  L  L  P  F  A  L  Q  E  L  *  L  D  K  S  E  I  R  L  Y  S  C  V  I  C  Y  V  S  S  L  S  L  C  L  L  Q  C  F  *  S  S  N  F  T  G  K  I  V  S  I  L  A  S  F  H  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20271" stop="20550"/>
                    <exon start="22237" stop="22550"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKAQSNSTQPHKFINPAMAGLLETIAVPRAAAAAASPSLSPVSGRRSSVKFSLFNGLKIQSTRSSVSFSSFTKSVPSRGGRIVCEAQDTAVLVPGVNDQSWETLVIGSKLPVLVEFWAPWCGPCRMIHPVIDELSQEFADKFKFFKVNTDESPGIATRYGIRSIPTVMIFKDGEKKDTVIGAVPKTTLTACIEKFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20269" e_stop="20550"/>
            <exon e_start="22237" e_stop="22675"/>
            <exon e_start="23391" e_stop="23407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.824"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20269" e_stop="20550" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20551" i_stop="22236" i_length="1686"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22237" e_stop="22675" e_length="439"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22676" i_stop="23390" i_length="715"/>
          </intron>
          <exon e_serial="3" e_score="0.824">
            <gDNA_exon_boundary e_start="23391" e_stop="23407" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20269" stop="20550"/>
              <exon start="22237" stop="22674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20286" stop="20550"/>
              <exon start="22237" stop="22261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20287" stop="20550"/>
              <exon start="22237" stop="22516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20287" stop="20550"/>
              <exon start="22237" stop="22374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20291" stop="20550"/>
              <exon start="22237" stop="22673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20291" stop="20550"/>
              <exon start="22237" stop="22652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541299" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20317" stop="20550"/>
              <exon start="22237" stop="22269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20335" stop="20550"/>
              <exon start="22237" stop="22516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20381" stop="20550"/>
              <exon start="22237" stop="22269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20384" stop="20550"/>
              <exon start="22237" stop="22662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280259" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20393" stop="20550"/>
              <exon start="22237" stop="22574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20417" stop="20550"/>
              <exon start="22237" stop="22675"/>
              <exon start="23391" stop="23407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398711" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22288" stop="22644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239105" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCAAAAAAGCCCAATCAAATTCTACTCAGCCACACAAATTTATCAACCCTGCTATGGCTGGTTTGCTGGAAACTATCGCAGTTCCTCGGGCCGCCGCCGCCGCTGCTTCGCCGTCGTTGTCTCCTGTTTCCGGTCGCCGGTCTTCTGTTAAATTCTCTCTATTCAATGGTCTTAAGATCCAGTCGACTCGTTCATCAGTATCCTTTAGCTCATTTACAAAATCTGTTCCCAGTAGAGGAGGAAGAATCGTCTGTGAGGCTCAGGATACTGCTGTTCTAG : TGCCTGGTGTTAATGATCAATCATGGGAGACTCTTGTAATCGGGTCTAAGTTACCTGTTCTGGTTGAATTTTGGGCTCCATGGTGTGGTCCATGCAGAATGATTCACCCGGTTATTGATGAACTATCACAGGAATTTGCTGACAAGTTTAAATTCTTCAAGGTGAACACGGATGAAAGTCCTGGCATCGCGACCAGATATGGGATTCGAAGTATCCCAACCGTCATGATTTTCAAGGATGGAGAGAAGAAAGATACAGTCATTGGTGCAGTCCCTAAAACAACGTTGACAGCCTGCATAGAAAAATTCTTGTAAAATGGTACATATGTAGAGCTCTTTTATATTTCCCTTCTTTTGCCTTTTGCACTGCAAGAACTATAACTTGATAAATCTGAGATTCGTCTGTATAGTTGTGTTATATGCTATGTTTCTTCTTTGTC : AATATAAGAAAAAAAAA</gDNA_template>
            <first_frame> L  S  K  K  P  N  Q  I  L  L  S  H  T  N  L  S  T  L  L  W  L  V  C  W  K  L  S  Q  F  L  G  P  P  P  P  L  L  R  R  R  C  L  L  F  P  V  A  G  L  L  L  N  S  L  Y  S  M  V  L  R  S  S  R  L  V  H  Q  Y  P  L  A  H  L  Q  N  L  F  P  V  E  E  E  E  S  S  V  R  L  R  I  L  L  F  *  :  C  L  V  L  M  I  N  H  G  R  L  L  *  S  G  L  S  Y  L  F  W  L  N  F  G  L  H  G  V  V  H  A  E  *  F  T  R  L  L  M  N  Y  H  R  N  L  L  T  S  L  N  S  S  R  *  T  R  M  K  V  L  A  S  R  P  D  M  G  F  E  V  S  Q  P  S  *  F  S  R  M  E  R  R  K  I  Q  S  L  V  Q  S  L  K  Q  R  *  Q  P  A  *  K  N  S  C  K  M  V  H  M  *  S  S  F  I  F  P  F  F  C  L  L  H  C  K  N  Y  N  L  I  N  L  R  F  V  C  I  V  V  L  Y  A  M  F  L  L  C   : Q  Y  K  K  K  K </first_frame>
            <second_frame>  S  Q  K  S  P  I  K  F  Y  S  A  T  Q  I  Y  Q  P  C  Y  G  W  F  A  G  N  Y  R  S  S  S  G  R  R  R  R  C  F  A  V  V  V  S  C  F  R  S  P  V  F  C  *  I  L  S  I  Q  W  S  *  D  P  V  D  S  F  I  S  I  L  *  L  I  Y  K  I  C  S  Q  *  R  R  K  N  R  L  *  G  S  G  Y  C  C  S  S :   A  W  C  *  *  S  I  M  G  D  S  C  N  R  V  *  V  T  C  S  G  *  I  L  G  S  M  V  W  S  M  Q  N  D  S  P  G  Y  *  *  T  I  T  G  I  C  *  Q  V  *  I  L  Q  G  E  H  G  *  K  S  W  H  R  D  Q  I  W  D  S  K  Y  P  N  R  H  D  F  Q  G  W  R  E  E  R  Y  S  H  W  C  S  P  *  N  N  V  D  S  L  H  R  K  I  L  V  K  W  Y  I  C  R  A  L  L  Y  F  P  S  F  A  F  C  T  A  R  T  I  T  *  *  I  *  D  S  S  V  *  L  C  Y  M  L  C  F  F  F  V  :  N  I  R  K  K   </second_frame>
            <third_frame>   L  K  K  A  Q  S  N  S  T  Q  P  H  K  F  I  N  P  A  M  A  G  L  L  E  T  I  A  V  P  R  A  A  A  A  A  A  S  P  S  L  S  P  V  S  G  R  R  S  S  V  K  F  S  L  F  N  G  L  K  I  Q  S  T  R  S  S  V  S  F  S  S  F  T  K  S  V  P  S  R  G  G  R  I  V  C  E  A  Q  D  T  A  V  L   : V  P  G  V  N  D  Q  S  W  E  T  L  V  I  G  S  K  L  P  V  L  V  E  F  W  A  P  W  C  G  P  C  R  M  I  H  P  V  I  D  E  L  S  Q  E  F  A  D  K  F  K  F  F  K  V  N  T  D  E  S  P  G  I  A  T  R  Y  G  I  R  S  I  P  T  V  M  I  F  K  D  G  E  K  K  D  T  V  I  G  A  V  P  K  T  T  L  T  A  C  I  E  K  F  L  *  N  G  T  Y  V  E  L  F  Y  I  S  L  L  L  P  F  A  L  Q  E  L  *  L  D  K  S  E  I  R  L  Y  S  C  V  I  C  Y  V  S  S  L  S :   I  *  E  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20271" stop="20550"/>
                    <exon start="22237" stop="22550"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKAQSNSTQPHKFINPAMAGLLETIAVPRAAAAAASPSLSPVSGRRSSVKFSLFNGLKIQSTRSSVSFSSFTKSVPSRGGRIVCEAQDTAVLVPGVNDQSWETLVIGSKLPVLVEFWAPWCGPCRMIHPVIDELSQEFADKFKFFKVNTDESPGIATRYGIRSIPTVMIFKDGEKKDTVIGAVPKTTLTACIEKFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25060" PGL_stop="25791"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25060" e_stop="25791"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25060" e_stop="25791" e_length="732"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25060" stop="25791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25060" stop="25485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAAAAAATGATATGGAGAATATGACTGGGAATACATGTCAATTATTTTATACAAACAAGTTCTCCAAATCCATGGATCCTAATGGATGTTTGAGTGTTTTAACCCAATTAATAATCCAGGTTTATATATTCAATTTTGGAAAGCAATCATAAATTATTTCTCTTTTTCATAACTTGAACTACTATATTTTTTCAACAAATGGTTTCGAGATAGGCCAGACTCAAGCTAGTAAAATGAAACTTTGTAGGGCATTGTTTTAGTGCTTGATTAAAGAGGTGTTTAAATTGACATGATTTTGTATCCAATCCATACTAATTGCTTTCATACTCTCACTCCCATTTGATTCTTAAACAGAAAGAAGGAGAAAACAATGAGCCGCTTTTCTGATTAATCCGCGAAGACCAAACTAATTATCACTCATCAAAAGTTTGTTAGTCCCATTTGTGCATTTCACGTAGTTTGCTTGCTCATACACATATGTTTGATTTCTATAGTGCATTTTGTGATTGTGAGGTCCGTGATTATTTGTGAATTTCATCTTTAATAGATTTCATGACTATCACCCGCGTTGGGTCTGATGAAGATATTTCCGTTGATAAGAAAAACTCAGTTCCATTTCCAACATCAGCCTCTGATAATGAATCTTCCTGTTTTGATTGCAACATTTGCCTTGACTCAGCACATGATCCTGTAGTCACCCTCTGCGGTCACCTCTACTGCTGGCCTTGC</gDNA_template>
            <first_frame> W  K  K  M  I  W  R  I  *  L  G  I  H  V  N  Y  F  I  Q  T  S  S  P  N  P  W  I  L  M  D  V  *  V  F  *  P  N  *  *  S  R  F  I  Y  S  I  L  E  S  N  H  K  L  F  L  F  F  I  T  *  T  T  I  F  F  Q  Q  M  V  S  R  *  A  R  L  K  L  V  K  *  N  F  V  G  H  C  F  S  A  *  L  K  R  C  L  N  *  H  D  F  V  S  N  P  Y  *  L  L  S  Y  S  H  S  H  L  I  L  K  Q  K  E  G  E  N  N  E  P  L  F  *  L  I  R  E  D  Q  T  N  Y  H  S  S  K  V  C  *  S  H  L  C  I  S  R  S  L  L  A  H  T  H  M  F  D  F  Y  S  A  F  C  D  C  E  V  R  D  Y  L  *  I  S  S  L  I  D  F  M  T  I  T  R  V  G  S  D  E  D  I  S  V  D  K  K  N  S  V  P  F  P  T  S  A  S  D  N  E  S  S  C  F  D  C  N  I  C  L  D  S  A  H  D  P  V  V  T  L  C  G  H  L  Y  C  W  P  C </first_frame>
            <second_frame>  G  K  K  *  Y  G  E  Y  D  W  E  Y  M  S  I  I  L  Y  K  Q  V  L  Q  I  H  G  S  *  W  M  F  E  C  F  N  P  I  N  N  P  G  L  Y  I  Q  F  W  K  A  I  I  N  Y  F  S  F  S  *  L  E  L  L  Y  F  F  N  K  W  F  R  D  R  P  D  S  S  *  *  N  E  T  L  *  G  I  V  L  V  L  D  *  R  G  V  *  I  D  M  I  L  Y  P  I  H  T  N  C  F  H  T  L  T  P  I  *  F  L  N  R  K  K  E  K  T  M  S  R  F  S  D  *  S  A  K  T  K  L  I  I  T  H  Q  K  F  V  S  P  I  C  A  F  H  V  V  C  L  L  I  H  I  C  L  I  S  I  V  H  F  V  I  V  R  S  V  I  I  C  E  F  H  L  *  *  I  S  *  L  S  P  A  L  G  L  M  K  I  F  P  L  I  R  K  T  Q  F  H  F  Q  H  Q  P  L  I  M  N  L  P  V  L  I  A  T  F  A  L  T  Q  H  M  I  L  *  S  P  S  A  V  T  S  T  A  G  L   </second_frame>
            <third_frame>   E  K  N  D  M  E  N  M  T  G  N  T  C  Q  L  F  Y  T  N  K  F  S  K  S  M  D  P  N  G  C  L  S  V  L  T  Q  L  I  I  Q  V  Y  I  F  N  F  G  K  Q  S  *  I  I  S  L  F  H  N  L  N  Y  Y  I  F  S  T  N  G  F  E  I  G  Q  T  Q  A  S  K  M  K  L  C  R  A  L  F  *  C  L  I  K  E  V  F  K  L  T  *  F  C  I  Q  S  I  L  I  A  F  I  L  S  L  P  F  D  S  *  T  E  R  R  R  K  Q  *  A  A  F  L  I  N  P  R  R  P  N  *  L  S  L  I  K  S  L  L  V  P  F  V  H  F  T  *  F  A  C  S  Y  T  Y  V  *  F  L  *  C  I  L  *  L  *  G  P  *  L  F  V  N  F  I  F  N  R  F  H  D  Y  H  P  R  W  V  *  *  R  Y  F  R  *  *  E  K  L  S  S  I  S  N  I  S  L  *  *  *  I  F  L  F  *  L  Q  H  L  P  *  L  S  T  *  S  C  S  H  P  L  R  S  P  L  L  L  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25594" stop="25791"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSLIDFMTITRVGSDEDISVDKKNSVPFPTSASDNESSCFDCNICLDSAHDPVVTLCGHLYCWPC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="26540" PGL_stop="25909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26540" e_stop="25909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="26540" e_stop="25909" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26540" stop="25909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGAGGCACAAGGATAAGGAAATGAAGCAACATTAGCATGGTGTATAAAGCTATATTTCTACTAAATCTCTTACTAGTCTATATTTGTCTACTATGAACTATTACCTGATTGTTGTAAGCACAACCACATATTTATACAAATATATGATGAAGATAAACATTATATGAACCTCAAAACAGGAGTAGGCACAAGATAGAGCAGCAGAAAAGAAAGATGAACAATCTGTTGAGAAATTTGTCCATCTGCATTTCTTCCCTTCTCATTCTAAGACCACTGCGTCCTCGGATGAGATAAGATCTAGGATGAGGATAAGCGATTCCAAACAGTCTTGAAGAAAACAGTTCTCCAAACACACCAACCACTGGGCTGAACAAACTGGTCATTGCTGTGCTCCCAAAGCTAGATGGAGCCAAAGCTGCGTAGTTACCAAAGGCTTGGGGGAGATATTGCCGGTGATGTTGAAATGTGGAGGGTCGTGGAGGGTAGACAGAAGTTTGACGAAGTCTCTGATGTAAGCGAGAGATTGGAGAGTCTGAATTATGCGGTGTCATCGTCCTAATAGCTCGAGGCCTATGAGGTATGTCTACATCTGCCTGATCCTTCTTGGGTTCAGACTCTAATGATGATAT</gDNA_template>
            <first_frame> K  R  G  T  R  I  R  K  *  S  N  I  S  M  V  Y  K  A  I  F  L  L  N  L  L  L  V  Y  I  C  L  L  *  T  I  T  *  L  L  *  A  Q  P  H  I  Y  T  N  I  *  *  R  *  T  L  Y  E  P  Q  N  R  S  R  H  K  I  E  Q  Q  K  R  K  M  N  N  L  L  R  N  L  S  I  C  I  S  S  L  L  I  L  R  P  L  R  P  R  M  R  *  D  L  G  *  G  *  A  I  P  N  S  L  E  E  N  S  S  P  N  T  P  T  T  G  L  N  K  L  V  I  A  V  L  P  K  L  D  G  A  K  A  A  *  L  P  K  A  W  G  R  Y  C  R  *  C  *  N  V  E  G  R  G  G  *  T  E  V  *  R  S  L  *  C  K  R  E  I  G  E  S  E  L  C  G  V  I  V  L  I  A  R  G  L  *  G  M  S  T  S  A  *  S  F  L  G  S  D  S  N  D  D   </first_frame>
            <second_frame>  K  E  A  Q  G  *  G  N  E  A  T  L  A  W  C  I  K  L  Y  F  Y  *  I  S  Y  *  S  I  F  V  Y  Y  E  L  L  P  D  C  C  K  H  N  H  I  F  I  Q  I  Y  D  E  D  K  H  Y  M  N  L  K  T  G  V  G  T  R  *  S  S  R  K  E  R  *  T  I  C  *  E  I  C  P  S  A  F  L  P  F  S  F  *  D  H  C  V  L  G  *  D  K  I  *  D  E  D  K  R  F  Q  T  V  L  K  K  T  V  L  Q  T  H  Q  P  L  G  *  T  N  W  S  L  L  C  S  Q  S  *  M  E  P  K  L  R  S  Y  Q  R  L  G  G  D  I  A  G  D  V  E  M  W  R  V  V  E  G  R  Q  K  F  D  E  V  S  D  V  S  E  R  L  E  S  L  N  Y  A  V  S  S  S  *  *  L  E  A  Y  E  V  C  L  H  L  P  D  P  S  W  V  Q  T  L  M  M  I  </second_frame>
            <third_frame>   K  R  H  K  D  K  E  M  K  Q  H  *  H  G  V  *  S  Y  I  S  T  K  S  L  T  S  L  Y  L  S  T  M  N  Y  Y  L  I  V  V  S  T  T  T  Y  L  Y  K  Y  M  M  K  I  N  I  I  *  T  S  K  Q  E  *  A  Q  D  R  A  A  E  K  K  D  E  Q  S  V  E  K  F  V  H  L  H  F  F  P  S  H  S  K  T  T  A  S  S  D  E  I  R  S  R  M  R  I  S  D  S  K  Q  S  *  R  K  Q  F  S  K  H  T  N  H  W  A  E  Q  T  G  H  C  C  A  P  K  A  R  W  S  Q  S  C  V  V  T  K  G  L  G  E  I  L  P  V  M  L  K  C  G  G  S  W  R  V  D  R  S  L  T  K  S  L  M  *  A  R  D  W  R  V  *  I  M  R  C  H  R  P  N  S  S  R  P  M  R  Y  V  Y  I  C  L  I  L  L  G  F  R  L  *  *  *  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0123M18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="28904" PGL_stop="28558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28904" e_stop="28558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="28904" e_stop="28558" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28904" stop="28558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28903" stop="28566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCTCTCTCTCCTTTTCCTCTCTTCTCTTCCTATCTCTCCTCTTTCTACGCCTCCTCTCCTCTTCCGAATCCGAATACTCCGAACTACTACCCGACTCTGAATCCGAATACGAGTCTTCAGAGTCCGAATACGAATCTTCTCCAGATGATGAAGAATCCGAATCGTCATAATCATCCCGCGATCTTCTTCTAGAACTTCGACTTCTCTTTCTGCGGTGTTTTCTCACTTCTCGTTCCGGTTCGGATTCAGATTCATCTTCTCTTTTGGATTTTGATTTGTGTTGCCGCTTCGATGGAGTCGCTCCATTTTCGTCTTCTGAAGCTTTTACTCGCTCTTTCGCCATT</gDNA_template>
            <first_frame> S  S  L  S  P  F  P  L  F  S  S  Y  L  S  S  F  Y  A  S  S  P  L  P  N  P  N  T  P  N  Y  Y  P  T  L  N  P  N  T  S  L  Q  S  P  N  T  N  L  L  Q  M  M  K  N  P  N  R  H  N  H  P  A  I  F  F  *  N  F  D  F  S  F  C  G  V  F  S  L  L  V  P  V  R  I  Q  I  H  L  L  F  W  I  L  I  C  V  A  A  S  M  E  S  L  H  F  R  L  L  K  L  L  L  A  L  S  P   </first_frame>
            <second_frame>  L  L  S  L  L  F  L  S  S  L  P  I  S  P  L  S  T  P  P  L  L  F  R  I  R  I  L  R  T  T  T  R  L  *  I  R  I  R  V  F  R  V  R  I  R  I  F  S  R  *  *  R  I  R  I  V  I  I  I  P  R  S  S  S  R  T  S  T  S  L  S  A  V  F  S  H  F  S  F  R  F  G  F  R  F  I  F  S  F  G  F  *  F  V  L  P  L  R  W  S  R  S  I  F  V  F  *  S  F  Y  S  L  F  R  H  </second_frame>
            <third_frame>   F  S  L  S  F  S  S  L  L  F  L  S  L  L  F  L  R  L  L  S  S  S  E  S  E  Y  S  E  L  L  P  D  S  E  S  E  Y  E  S  S  E  S  E  Y  E  S  S  P  D  D  E  E  S  E  S  S  *  S  S  R  D  L  L  L  E  L  R  L  L  F  L  R  C  F  L  T  S  R  S  G  S  D  S  D  S  S  S  L  L  D  F  D  L  C  C  R  F  D  G  V  A  P  F  S  S  S  E  A  F  T  R  S  F  A  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28904" stop="28710"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLSPFPLFSSYLSSFYASSPLPNPNTPNYYPTLNPNTSLQSPNTNLLQMMKNPNRHNHPAIFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="28568" PGL_stop="32038"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28568" e_stop="28896"/>
            <exon e_start="28965" e_stop="29064"/>
            <exon e_start="30015" e_stop="30060"/>
            <exon e_start="30307" e_stop="30356"/>
            <exon e_start="30478" e_stop="30519"/>
            <exon e_start="30757" e_stop="30870"/>
            <exon e_start="31445" e_stop="31523"/>
            <exon e_start="31624" e_stop="31695"/>
            <exon e_start="31770" e_stop="32038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.495" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28568" e_stop="28896" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28897" i_stop="28964" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28965" e_stop="29064" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29065" i_stop="30014" i_length="950"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30015" e_stop="30060" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30061" i_stop="30306" i_length="246"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30307" e_stop="30356" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.495" acc_prob="0.938">
            <gDNA_intron_boundary i_start="30357" i_stop="30477" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30478" e_stop="30519" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30520" i_stop="30756" i_length="237"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30757" e_stop="30870" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30871" i_stop="31444" i_length="574"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31445" e_stop="31523" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.966">
            <gDNA_intron_boundary i_start="31524" i_stop="31623" i_length="100"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31624" e_stop="31695" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31696" i_stop="31769" i_length="74"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31770" e_stop="32038" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28568" stop="28896"/>
              <exon start="28965" stop="29064"/>
              <exon start="30015" stop="30060"/>
              <exon start="30307" stop="30356"/>
              <exon start="30478" stop="30519"/>
              <exon start="30757" stop="30854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28569" stop="28896"/>
              <exon start="28965" stop="29064"/>
              <exon start="30015" stop="30060"/>
              <exon start="30307" stop="30356"/>
              <exon start="30478" stop="30519"/>
              <exon start="30757" stop="30785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30330" stop="30356"/>
              <exon start="30478" stop="30519"/>
              <exon start="30757" stop="30870"/>
              <exon start="31445" stop="31523"/>
              <exon start="31624" stop="31695"/>
              <exon start="31770" stop="32038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542660" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAG : AGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTG : GAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAG : GTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCA : ATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAA : ATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAG : GCAAGAACTGATGCGAGAGCGTGAGAAGCACAAGCAAGAACAGGTGGAAACATTGAAGCGCGAGATGCAGAGTGGAATG : GCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAG : GCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTTCTGCAAAATTTTGGTCTACGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTTCTGTCTCCTTTTCGTTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTAAGCTTATTACTAGATATCACTAGGCTAGATGAGTTGAAATCTAGTTCATGTATTGTTGTGTAATATCATTTGCACTCCCATCTTTTTATTCTCTTCGATCTCCA</gDNA_template>
            <first_frame> E  R  V  K  A  S  E  D  E  N  G  A  T  P  S  K  R  Q  H  K  S  K  S  K  R  E  D  E  S  E  S  E  P  E  R  E  V  R  K  H  R  R  K  R  S  R  S  S  R  R  R  S  R  D  D  Y  D  D  S  D  S  S  S  S  G  E  D  S  Y  S  D  S  E  D  S  Y  S  D  S  E  S  G  S  S  S  E  Y  S  D  S  E  E  E  R  R  R  R  K  R  R  D  R  K  R  R  E  E  K  E  R :   E  E  R  E  E  E  E  K  E  R  E  G  E  N  W  C  C  Y  K  L  L  G  K  I  W  N  H  Q  G  N  *  Y  V  :  E  Q  T  A  R  V  Y  R  M  V  G  R  N  K  E   : G  E  S  G  K  P  A  K  L  G  R  E  A  I  V  Q  A  :  I  H  G  G  S  *  H  C  N  L  P  F  *  K  :  I  L  *  P  *  R  L  L  Q  T  *  N  G  K  G  K  *  K  R  C  Q  E  G  R  G  R  *  T  Y  C  L  R  *  *  R  T  A  Q  :  A  R  T  D  A  R  A  *  E  A  Q  A  R  T  G  G  N  I  E  A  R  D  A  E  W  N   : G  A  S  N  E  R  T  S  S  I  K  R  R  D  G  L  S  I  Q  A  W  *  L  *   : G  C  S  C  Y  S  K  T  F  G  P  *  S  P  Y  V  D  E  V  L  Q  N  F  G  L  R  Y  N  G  L  H  *  T  T  C  F  S  F  S  V  S  F  S  L  S  K  Y  A  C  R  F  I  C  K  S  K  L  I  T  R  Y  H  *  A  R  *  V  E  I  *  F  M  Y  C  C  V  I  S  F  A  L  P  S  F  Y  S  L  R  S  P </first_frame>
            <second_frame>  S  E  *  K  L  Q  K  T  K  M  E  R  L  H  R  S  G  N  T  N  Q  N  P  K  E  K  M  N  L  N  P  N  R  N  E  K  *  E  N  T  A  E  R  E  V  E  V  L  E  E  D  R  G  M  I  M  T  I  R  I  L  H  H  L  E  K  I  R  I  R  T  L  K  T  R  I  R  I  Q  S  R  V  V  V  R  S  I  R  I  R  K  R  R  G  G  V  E  R  G  E  I  G  R  E  E  R  K  R  R   : E  K  K  E  R  K  K  K  K  K  E  K  G  K  T  G  A  V  T  N  S  W  G  K  Y  G  I  I  K  E  T  D  M  W :   N  K  R  P  E  F  T  A  W  L  A  E  I  K  K  :  V  N  L  E  S  L  P  N  W  E  E  K  Q  L  F  K  Q :   F  M  E  D  H  N  T  A  T  F  P  S  K  K :   Y  Y  N  L  D  A  Y  Y  R  R  K  M  E  K  E  S  R  R  G  V  K  K  V  V  D  D  E  R  T  V  F  D  D  E  E  Q  R  R :   Q  E  L  M  R  E  R  E  K  H  K  Q  E  Q  V  E  T  L  K  R  E  M  Q  S  G  M  :  A  Q  A  M  K  E  Q  A  Q  L  R  E  E  M  A  Y  Q  Y  K  L  G  N  F  E  :  A  A  A  A  I  Q  R  R  L  D  P  D  L  P  M  *  T  R  F  C  K  I  L  V  Y  A  T  T  D  Y  I  R  L  H  V  L  V  F  L  S  P  F  R  *  V  N  M  L  A  D  S  S  A  S  L  S  L  L  L  D  I  T  R  L  D  E  L  K  S  S  S  C  I  V  V  *  Y  H  L  H  S  H  L  F  I  L  F  D  L   </second_frame>
            <third_frame>   A  S  K  S  F  R  R  R  K  W  S  D  S  I  E  A  A  T  Q  I  K  I  Q  K  R  R  *  I  *  I  R  T  G  T  R  S  E  K  T  P  Q  K  E  K  S  K  F  *  K  K  I  A  G  *  L  *  R  F  G  F  F  I  I  W  R  R  F  V  F  G  L  *  R  L  V  F  G  F  R  V  G  *  *  F  G  V  F  G  F  G  R  G  E  E  A  *  K  E  E  R  *  E  E  K  R  G  K  G  E  :  R  R  K  R  G  R  R  K  R  K  R  R  G  K  L  V  L  L  Q  T  L  G  E  N  M  E  S  S  R  K  L  I  C   : G  T  N  G  Q  S  L  P  H  G  W  Q  K  *  R  R :   *  I  W  K  A  C  Q  I  G  K  R  S  N  C  S  S   : N  S  W  R  I  I  T  L  Q  P  S  L  L  K   : N  I  I  T  L  T  P  I  T  D  V  K  W  K  R  K  V  E  E  V  S  R  R  S  W  T  M  N  V  L  S  S  M  M  K  N  S  A   : G  K  N  *  C  E  S  V  R  S  T  S  K  N  R  W  K  H  *  S  A  R  C  R  V  E  W :   R  K  Q  *  K  N  K  L  N  *  E  K  R  W  L  I  N  T  S  L  V  T  L  R :   L  Q  L  L  F  K  D  V  W  T  L  I  S  L  C  R  R  G  S  A  K  F  W  S  T  L  Q  R  I  T  L  D  Y  M  F  *  F  F  C  L  L  F  V  E  *  I  C  L  Q  I  H  L  Q  V  *  A  Y  Y  *  I  S  L  G  *  M  S  *  N  L  V  H  V  L  L  C  N  I  I  C  T  P  I  F  L  F  S  S  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28680" stop="28896"/>
                    <exon start="28965" stop="29064"/>
                    <exon start="30015" stop="30060"/>
                    <exon start="30307" stop="30356"/>
                    <exon start="30478" stop="30519"/>
                    <exon start="30757" stop="30870"/>
                    <exon start="31445" stop="31523"/>
                    <exon start="31624" stop="31695"/>
                    <exon start="31770" stop="31817"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENTAEREVEVLEEDRGMIMTIRILHHLEKIRIRTLKTRIRIQSRVVVRSIRIRKRRGGVERGEIGREERKRREKKERKKKKKEKGKTGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLPNWEEKQLFKQFMEDHNTATFPSKKYYNLDAYYRRKMEKESRRGVKKVVDDERTVFDDEEQRRQELMREREKHKQEQVETLKREMQSGMAQAMKEQAQLREEMAYQYKLGNFEAAAAIQRRLDPDLPM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="40697" PGL_stop="41275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40697" e_stop="41275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="40697" e_stop="41275" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40697" stop="41275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542371" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATACTTATTTTAATCCAGTGGAAATTCACAAAATAACACATGCAATTATATTGTTATCAAGCATATATACAAACAACAAAAAGATAACTAAAAAAACAGAAAAGTTCACTCTTGCATTCTTCCATTAAGTGCGTCGTCTCTGAGCTCTCTTCATTGACCTTCTCATTTTCTTGGGATAAATGCCTTCAAAAAATTCAACAAACCATTTTGGCTTACGGTATTTAAACACGAGGATCCACACAACAGTTCCAACAACTAGTCCAAAGCTGTAGCCTATGACTACTGATTCCCACGTAAATCCACTAAAAAAATATGACTCGCCTTCATATTCCAATGGTTGAGGAACATGGGATGGATCAGTCGTTCCACATTGCTTTGATAAAGGAGGACCACATAGATCAAGGTTTCCACCATACGAGTCATTTTCAAATGTGTTGAATTGTAGACCTTGAGAATCGATCCAATAAGAAGATTCTGAGAGAGGTTTAAGACTGCTAGAAACTTCATTGTTATCAATTTCTTTGGAATCTTTCCGGTGAGACGATTCCAGGAGAGATCTAACGCTTCAAGCTTATTCA</gDNA_template>
            <first_frame> N  T  Y  F  N  P  V  E  I  H  K  I  T  H  A  I  I  L  L  S  S  I  Y  T  N  N  K  K  I  T  K  K  T  E  K  F  T  L  A  F  F  H  *  V  R  R  L  *  A  L  F  I  D  L  L  I  F  L  G  *  M  P  S  K  N  S  T  N  H  F  G  L  R  Y  L  N  T  R  I  H  T  T  V  P  T  T  S  P  K  L  *  P  M  T  T  D  S  H  V  N  P  L  K  K  Y  D  S  P  S  Y  S  N  G  *  G  T  W  D  G  S  V  V  P  H  C  F  D  K  G  G  P  H  R  S  R  F  P  P  Y  E  S  F  S  N  V  L  N  C  R  P  *  E  S  I  Q  *  E  D  S  E  R  G  L  R  L  L  E  T  S  L  L  S  I  S  L  E  S  F  R  *  D  D  S  R  R  D  L  T  L  Q  A  Y  S </first_frame>
            <second_frame>  I  L  I  L  I  Q  W  K  F  T  K  *  H  M  Q  L  Y  C  Y  Q  A  Y  I  Q  T  T  K  R  *  L  K  K  Q  K  S  S  L  L  H  S  S  I  K  C  V  V  S  E  L  S  S  L  T  F  S  F  S  W  D  K  C  L  Q  K  I  Q  Q  T  I  L  A  Y  G  I  *  T  R  G  S  T  Q  Q  F  Q  Q  L  V  Q  S  C  S  L  *  L  L  I  P  T  *  I  H  *  K  N  M  T  R  L  H  I  P  M  V  E  E  H  G  M  D  Q  S  F  H  I  A  L  I  K  E  D  H  I  D  Q  G  F  H  H  T  S  H  F  Q  M  C  *  I  V  D  L  E  N  R  S  N  K  K  I  L  R  E  V  *  D  C  *  K  L  H  C  Y  Q  F  L  W  N  L  S  G  E  T  I  P  G  E  I  *  R  F  K  L  I   </second_frame>
            <third_frame>   Y  L  F  *  S  S  G  N  S  Q  N  N  T  C  N  Y  I  V  I  K  H  I  Y  K  Q  Q  K  D  N  *  K  N  R  K  V  H  S  C  I  L  P  L  S  A  S  S  L  S  S  L  H  *  P  S  H  F  L  G  I  N  A  F  K  K  F  N  K  P  F  W  L  T  V  F  K  H  E  D  P  H  N  S  S  N  N  *  S  K  A  V  A  Y  D  Y  *  F  P  R  K  S  T  K  K  I  *  L  A  F  I  F  Q  W  L  R  N  M  G  W  I  S  R  S  T  L  L  *  *  R  R  T  T  *  I  K  V  S  T  I  R  V  I  F  K  C  V  E  L  *  T  L  R  I  D  P  I  R  R  F  *  E  R  F  K  T  A  R  N  F  I  V  I  N  F  F  G  I  F  P  V  R  R  F  Q  E  R  S  N  A  S  S  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0123M18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="41492" PGL_stop="40702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41492" e_stop="40702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="41492" e_stop="40702" e_length="791"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41492" stop="40702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542364" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTGTACACATCCTACAAGGATTCTGTGAGTTTGGTGATCAAAGGCCAGGACATTGAGCTAGAAAGAATCAGCACAATTATGACAACCATAGACCTCTCGAGCAACCATTTTGAAGGTGTCATTCCAAAAACACTAAAGGATCTCAGCTCACTTTGGCTACTCAATTTATCCCATAACAATCTCATAGGTCACATTCCAATGGAATTGAGGCAATTGAATAAGCTTGAAGCGTTAGATCTCTCCTGGAATCGTCTCACCGGAAAGATTCCAAAGAAATTGATAACAATGAAGTTTCTAGCAGTCTTAAACCTCTCTCAGAATCTTCTTATTGGATCGATTCTCAAGGTCTACAATTCAACACATTTGAAAATGACTCGTATGGTGGAAACCTTGATCTATGTGGTCCTCCTTTATCAAAGCAATGTGGAACGACTGATCCATCCCATGTTCCTCAACCATTGGAATATGAAGGCGAGTCATATTTTTTTAGTGGATTTACGTGGGAATCAGTAGTCATAGGCTACAGCTTTGGACTAGTTGTTGGAACTGTTGTGTGGATCCTCGTGTTTAAATACCGTAAGCCAAAATGGTTTGTTGAATTTTTTGAAGGCATTTATCCCAAGAAAATGAGAAGGTCAATGAAGAGAGCTCAGAGACGACGCACTTAATGGAAGAATGCAAGAGTGAACTTTTCTGTTTTTTTAGTTATCTTTTTGTTGTTTGTATATATGCTTGATAACAATATAATTGCATGTGTTATTTTGTGAATTTCCACTGGATTAAAATAA</gDNA_template>
            <first_frame> S  L  Y  T  S  Y  K  D  S  V  S  L  V  I  K  G  Q  D  I  E  L  E  R  I  S  T  I  M  T  T  I  D  L  S  S  N  H  F  E  G  V  I  P  K  T  L  K  D  L  S  S  L  W  L  L  N  L  S  H  N  N  L  I  G  H  I  P  M  E  L  R  Q  L  N  K  L  E  A  L  D  L  S  W  N  R  L  T  G  K  I  P  K  K  L  I  T  M  K  F  L  A  V  L  N  L  S  Q  N  L  L  I  G  S  I  L  K  V  Y  N  S  T  H  L  K  M  T  R  M  V  E  T  L  I  Y  V  V  L  L  Y  Q  S  N  V  E  R  L  I  H  P  M  F  L  N  H  W  N  M  K  A  S  H  I  F  L  V  D  L  R  G  N  Q  *  S  *  A  T  A  L  D  *  L  L  E  L  L  C  G  S  S  C  L  N  T  V  S  Q  N  G  L  L  N  F  L  K  A  F  I  P  R  K  *  E  G  Q  *  R  E  L  R  D  D  A  L  N  G  R  M  Q  E  *  T  F  L  F  F  *  L  S  F  C  C  L  Y  I  C  L  I  T  I  *  L  H  V  L  F  C  E  F  P  L  D  *  N   </first_frame>
            <second_frame>  H  C  T  H  P  T  R  I  L  *  V  W  *  S  K  A  R  T  L  S  *  K  E  S  A  Q  L  *  Q  P  *  T  S  R  A  T  I  L  K  V  S  F  Q  K  H  *  R  I  S  A  H  F  G  Y  S  I  Y  P  I  T  I  S  *  V  T  F  Q  W  N  *  G  N  *  I  S  L  K  R  *  I  S  P  G  I  V  S  P  E  R  F  Q  R  N  *  *  Q  *  S  F  *  Q  S  *  T  S  L  R  I  F  L  L  D  R  F  S  R  S  T  I  Q  H  I  *  K  *  L  V  W  W  K  P  *  S  M  W  S  S  F  I  K  A  M  W  N  D  *  S  I  P  C  S  S  T  I  G  I  *  R  R  V  I  F  F  *  W  I  Y  V  G  I  S  S  H  R  L  Q  L  W  T  S  C  W  N  C  C  V  D  P  R  V  *  I  P  *  A  K  M  V  C  *  I  F  *  R  H  L  S  Q  E  N  E  K  V  N  E  E  S  S  E  T  T  H  L  M  E  E  C  K  S  E  L  F  C  F  F  S  Y  L  F  V  V  C  I  Y  A  *  *  Q  Y  N  C  M  C  Y  F  V  N  F  H  W  I  K  I  </second_frame>
            <third_frame>   I  V  H  I  L  Q  G  F  C  E  F  G  D  Q  R  P  G  H  *  A  R  K  N  Q  H  N  Y  D  N  H  R  P  L  E  Q  P  F  *  R  C  H  S  K  N  T  K  G  S  Q  L  T  L  A  T  Q  F  I  P  *  Q  S  H  R  S  H  S  N  G  I  E  A  I  E  *  A  *  S  V  R  S  L  L  E  S  S  H  R  K  D  S  K  E  I  D  N  N  E  V  S  S  S  L  K  P  L  S  E  S  S  Y  W  I  D  S  Q  G  L  Q  F  N  T  F  E  N  D  S  Y  G  G  N  L  D  L  C  G  P  P  L  S  K  Q  C  G  T  T  D  P  S  H  V  P  Q  P  L  E  Y  E  G  E  S  Y  F  F  S  G  F  T  W  E  S  V  V  I  G  Y  S  F  G  L  V  V  G  T  V  V  W  I  L  V  F  K  Y  R  K  P  K  W  F  V  E  F  F  E  G  I  Y  P  K  K  M  R  R  S  M  K  R  A  Q  R  R  R  T  *  W  K  N  A  R  V  N  F  S  V  F  L  V  I  F  L  L  F  V  Y  M  L  D  N  N  I  I  A  C  V  I  L  *  I  S  T  G  L  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41492" stop="40977"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLYTSYKDSVSLVIKGQDIELERISTIMTTIDLSSNHFEGVIPKTLKDLSSLWLLNLSHNNLIGHIPMELRQLNKLEALDLSWNRLTGKIPKKLITMKFLAVLNLSQNLLIGSILKVYNSTHLKMTRMVETLIYVVLLYQSNVERLIHPMFLNHWNMKASHIFLVDLRGNQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41262" stop="40822"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVRSLLESSHRKDSKEIDNNEVSSSLKPLSESSYWIDSQGLQFNTFENDSYGGNLDLCGPPLSKQCGTTDPSHVPQPLEYEGESYFFSGFTWESVVIGYSFGLVVGTVVWILVFKYRKPKWFVEFFEGIYPKKMRRSMKRAQRRRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="47306" PGL_stop="47718"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47306" e_stop="47718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="47306" e_stop="47718" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47306" stop="47718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTTTTTTCAGCAGCCAAAAAGAGAGAAAAAGAGCAGTTTTTCGCAGTCAAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGTATATTATATTCATCTCAATCTTTGATTAGAAACTGACAGAGTTGGATTTGGTGGCCTGAAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTGTTTTATGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTTATTATAGTGGAGCTTTTGGTCCTGTGATTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTG</gDNA_template>
            <first_frame> E  F  F  Q  Q  P  K  R  E  K  K  S  S  F  S  Q  S  K  F  S  P  N  S  Q  L  Q  I  A  I  P  A  S  F  L  V  R  L  S  *  F  L  D  S  I  L  Y  S  S  Q  S  L  I  R  N  *  Q  S  W  I  W  W  P  E  A  S  V  L  L  S  *  T  V  A  A  K  L  V  I  L  L  L  *  F  S  R  F  G  A  I  L  F  C  C  C  S  L  F  G  T  C  F  M  A  N  F  G  E  Q  Y  C  N  S  W  L  L  *  W  S  F  W  S  C  D  F  L  L  F  T  S  K  G  F  P  R  K  S  W   </first_frame>
            <second_frame>  S  F  F  S  S  Q  K  E  R  K  R  A  V  F  R  S  Q  N  S  A  L  T  A  N  F  K  L  R  F  P  L  R  F  L  S  D  *  A  D  F  W  T  V  Y  Y  I  H  L  N  L  *  L  E  T  D  R  V  G  F  G  G  L  K  L  Q  F  C  C  R  E  Q  *  L  R  N  W  *  F  C  S  F  N  S  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  A  L  V  L  W  P  I  L  E  N  N  I  V  T  L  G  Y  Y  S  G  A  F  G  P  V  I  F  Y  S  S  H  R  R  V  F  H  V  N  L  G  </second_frame>
            <third_frame>   V  F  S  A  A  K  K  R  E  K  E  Q  F  F  A  V  K  I  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  G  Q  Y  I  I  F  I  S  I  F  D  *  K  L  T  E  L  D  L  V  A  *  S  F  S  F  A  V  V  N  S  S  C  E  I  G  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  W  H  L  F  Y  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  L  *  F  F  T  L  H  I  E  G  F  S  T  *  I  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0123M18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="59651" PGL_stop="62495"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59651" e_stop="59801"/>
            <exon e_start="60145" e_stop="60240"/>
            <exon e_start="60740" e_stop="61268"/>
            <exon e_start="61369" e_stop="61727"/>
            <exon e_start="62068" e_stop="62495"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.759" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59651" e_stop="59801" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60145" e_stop="60240" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.970">
            <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60740" e_stop="61268" e_length="529"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.759">
            <gDNA_intron_boundary i_start="61269" i_stop="61368" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61369" e_stop="61727" e_length="359"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61728" i_stop="62067" i_length="340"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="62068" e_stop="62495" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59651" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59664" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61268"/>
              <exon start="61369" stop="61727"/>
              <exon start="62068" stop="62376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59667" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61268"/>
              <exon start="61369" stop="61512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59667" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61268"/>
              <exon start="61369" stop="61432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59677" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59679" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61268"/>
              <exon start="61369" stop="61531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59679" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59679" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59679" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="60860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59680" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61268"/>
              <exon start="61369" stop="61496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59680" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59680" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59680" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59680" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59680" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59680" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="60984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59681" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61268"/>
              <exon start="61369" stop="61492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59681" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59681" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59683" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59683" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59685" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61268"/>
              <exon start="61369" stop="61386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59685" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59686" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61268"/>
              <exon start="61369" stop="61381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59686" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59688" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59690" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59690" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="60937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59691" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="60984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59691" stop="59801"/>
              <exon start="60145" stop="60204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59692" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59692" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59694" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="60929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59697" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59697" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59703" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59712" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59758" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="60976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60156" stop="60240"/>
              <exon start="60740" stop="61128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60156" stop="60240"/>
              <exon start="60740" stop="61046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60162" stop="60240"/>
              <exon start="60740" stop="61111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60192" stop="60240"/>
              <exon start="60740" stop="61109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61195" stop="61268"/>
              <exon start="61369" stop="61727"/>
              <exon start="62068" stop="62171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61254" stop="61268"/>
              <exon start="61369" stop="61727"/>
              <exon start="62068" stop="62334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61389" stop="61727"/>
              <exon start="62068" stop="62495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61389" stop="61727"/>
              <exon start="62068" stop="62165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61425" stop="61727"/>
              <exon start="62068" stop="62381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288365" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61436" stop="61727"/>
              <exon start="62068" stop="62276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61655" stop="61727"/>
              <exon start="62068" stop="62376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747193" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTCTTACTACACACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG : GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG : AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAG : GAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAG : GTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAGAATCGAGCGCTTACCAACACGCCAACAATTATAGCGCTCACAACTTTAAGTCCACCCAACAAGCGTCATGTTCGATCAATGACTCACTCAACAATTTCCAGTATGAATGATCATGTGAAT</gDNA_template>
            <first_frame> Q  I  L  T  T  H  T  I  S  P  K  I  I  F  *  N  L  H  L  T  I  F  S  K  Q  K  S  F  S  *  Y  N  H  G  S  S  S  C  C  I  A  S  F  Y  F  L  Y  S  K  G   : G  E  N  *  C  I  F  E  G  F  E  S  L  W  N  F  S  L  *  P  C  *  I  *  F  W  L  F  I  Q  N  Q   : E  R  K  K  V  I  P  R  S  Y  *  S  R  D  N  G  C  I  S  R  C  N  E  Y  P  C  D  R  K  E  N  L  K  K  R  L  C  S  N  H  W  S  V  F  R  T  R  T  S  Y  S  K  S  S  G  *  D  R  E  M  A  C  N  Y  G  M  *  R  L  S  *  S  *  K  S  S  K  I  S  R  D  A  *  G  E  L  Y  N  N  A  F  R  P  C  I  A  *  Q  R  Q  T  I  C  R  *  L  *  E  I  R  Q  S  S  *  C  I  G  L  Q  C  S  C  L  S  A  Y  R  E  R  A  F  V  Y  S  *  R  I  *  A  *  C  W  D  *  P  S  W  S  F  P  S  F  E  I  V  D  *  *  F  E  A  V  *  L  P  F  K  E  T  H  H  C  W  F  D  Y  R :   K  H  K  H  I  G  W  K  C  T  S  K  G  Q  P  R  G  L  E  G  F  S  K  G  A  R  W  T  *  Q  L  S  H  D  *  R  W  *  L  *  W  C  Q  S  L  Q  R  Q  Q  G  L  Q  Y  A  H  Y  A  G  I  P  *  T  I  P  R  R  D  W  H  H  I  C  L  P  I  P  W  L  H  R  D  N  R  A  I  Q  G  A  Y  P  L  V  *  A  P  F  P  S  I  P  E  V  Y  H  Q  R  I  R  L  R  G  R  I  W  K  E  T  C  T   : G  C  *  *  S  K  S  Y  K  I  R  C  V  L  E  L  E  Q  E  L  F  L  L  *  E  P  V  V  R  R  S  *  *  R  *  E  S  A  *  S  V  G  S  Q  *  E  T  R  G  I  G  L  D  F  L  L  I  E  F  N  H  H  Q  D  E  H  E  K  G  V  D  E  G  E  F  E  S  S  L  F  C  C  S  *  K  V  V  T  S  *  N  F  *  V  R  N  K  Y  H  S  S  F  *  N  R  A  L  T  N  T  P  T  I  I  A  L  T  T  L  S  P  P  N  K  R  H  V  R  S  M  T  H  S  T  I  S  S  M  N  D  H  V  N </first_frame>
            <second_frame>  K  F  L  L  H  T  L  S  V  Q  K  S  F  F  K  I  S  I  L  Q  F  F  Q  N  K  N  H  F  P  N  I  I  M  A  L  Q  A  A  A  L  L  P  S  T  F  S  I  P  K  E  :  G  K  T  S  A  S  L  K  D  S  S  L  F  G  I  S  L  S  D  H  V  K  S  D  F  G  S  S  F  K  I  K  :  S  G  R  K  S  S  L  G  A  I  R  A  E  T  M  V  A  S  P  G  V  T  S  T  P  V  T  G  K  K  T  L  R  K  G  C  V  V  I  T  G  A  S  S  G  L  G  L  A  T  A  K  A  L  A  E  T  G  K  W  H  V  I  M  A  C  R  D  F  L  K  A  E  R  A  A  K  S  A  G  M  P  K  E  N  Y  T  I  M  H  L  D  L  A  S  L  D  S  V  R  Q  F  V  D  N  F  R  R  S  G  N  P  L  D  V  L  V  C  N  A  A  V  Y  Q  P  T  A  K  E  P  S  F  T  A  E  G  F  E  L  S  V  G  T  N  H  L  G  H  F  L  L  S  R  L  L  I  D  D  L  K  Q  S  D  Y  P  S  K  R  L  I  I  V  G  S  I  T   : G  N  T  N  T  L  A  G  N  V  P  P  K  A  N  L  G  D  L  R  G  L  A  R  G  L  D  G  L  N  S  S  A  M  I  D  G  G  D  F  D  G  A  K  A  Y  K  D  S  K  V  C  N  M  L  T  M  Q  E  F  H  R  R  Y  H  E  E  T  G  I  T  F  A  S  L  Y  P  G  C  I  A  T  T  G  L  F  R  E  H  I  P  L  F  R  L  L  F  P  P  F  Q  K  F  I  T  K  G  F  V  S  E  A  E  S  G  K  R  L  A  Q  :  V  V  S  D  P  S  L  T  K  S  G  V  Y  W  S  W  N  K  N  S  S  S  F  E  N  Q  L  S  E  E  A  S  D  V  E  K  A  R  K  V  W  E  V  S  E  K  L  V  G  L  A  *  I  F  C  *  L  S  S  T  I  T  K  T  N  T  K  K  E  L  M  K  E  N  L  N  R  V  C  F  V  V  V  K  K  L  S  L  R  K  I  F  E  L  G  I  N  I  I  H  P  F  R  I  E  R  L  P  T  R  Q  Q  L  *  R  S  Q  L  *  V  H  P  T  S  V  M  F  D  Q  *  L  T  Q  Q  F  P  V  *  M  I  M  *   </second_frame>
            <third_frame>   N  S  Y  Y  T  H  Y  Q  S  K  N  H  F  L  K  S  P  S  Y  N  F  F  K  T  K  I  I  F  L  I  *  S  W  L  F  K  L  L  H  C  F  L  L  L  S  L  F  Q  R  R :   G  K  L  V  H  L  *  R  I  R  V  S  L  E  F  L  S  L  T  M  L  N  L  I  L  A  L  H  S  K  S  R :   A  E  E  S  H  P  S  E  L  L  E  P  R  Q  W  L  H  L  P  V  *  R  V  P  L  *  Q  E  R  K  P  *  E  K  V  V  *  *  S  L  E  R  L  Q  D  *  D  *  L  Q  Q  K  L  W  L  R  Q  G  N  G  M  *  L  W  H  V  E  T  F  L  K  L  K  E  Q  Q  N  Q  Q  G  C  L  R  R  I  I  Q  *  C  I  *  T  L  H  R  L  T  A  S  D  N  L  S  I  T  L  G  D  Q  A  I  L  L  M  Y  W  F  A  M  Q  L  F  I  S  L  P  R  K  S  L  R  L  Q  L  K  D  L  S  L  V  L  G  L  T  I  L  V  I  S  F  F  R  D  C  *  L  M  I  *  S  S  L  I  T  L  Q  R  D  S  S  L  L  V  R  L  Q  :  E  T  Q  T  H  W  L  E  M  Y  L  Q  R  P  T  S  G  T  *  G  V  *  Q  G  G  S  M  D  L  T  A  Q  P  *  L  T  V  V  T  L  M  V  P  K  L  T  K  T  A  R  F  A  I  C  S  L  C  R  N  S  I  D  D  T  T  K  R  L  A  S  H  L  P  P  Y  T  L  A  A  S  R  Q  Q  G  Y  S  G  S  I  S  P  C  L  G  S  F  S  L  H  S  R  S  L  S  P  K  D  S  S  P  R  Q  N  L  E  R  D  L  H  R :   L  L  V  I  Q  V  L  Q  N  Q  V  C  T  G  A  G  T  R  T  L  P  P  L  R  T  S  C  Q  K  K  L  V  T  L  R  K  R  V  K  C  G  K  S  V  R  N  S  W  D  W  L  R  F  F  A  D  *  V  Q  P  S  P  R  R  T  R  K  R  S  *  *  R  R  I  *  I  E  S  V  L  L  *  L  K  S  C  H  F  V  K  F  L  S  *  E  *  I  S  F  I  L  L  E  S  S  A  Y  Q  H  A  N  N  Y  S  A  H  N  F  K  S  T  Q  Q  A  S  C  S  I  N  D  S  L  N  N  F  Q  Y  E  *  S  C  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59652" stop="59801"/>
                    <exon start="60145" stop="60240"/>
                    <exon start="60740" stop="61268"/>
                    <exon start="61369" stop="61727"/>
                    <exon start="62068" stop="62223"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLLHTLSVQKSFFKISILQFFQNKNHFPNIIMALQAAALLPSTFSIPKEGKTSASLKDSSLFGISLSDHVKSDFGSSFKIKSGRKSSLGAIRAETMVASPGVTSTPVTGKKTLRKGCVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGMPKENYTIMHLDLASLDSVRQFVDNFRRSGNPLDVLVCNAAVYQPTAKEPSFTAEGFELSVGTNHLGHFLLSRLLIDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLARGLDGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKFITKGFVSEAESGKRLAQVVSDPSLTKSGVYWSWNKNSSSFENQLSEEASDVEKARKVWEVSEKLVGLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61368" e_stop="61856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="61368" e_stop="61856" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61368" stop="61856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725605" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAGGTAATATTTATTAGTGTCAGTTTCACGTATAACCACTGAACTTTATCCACTATAACAGTAACCGTAAAGATAAGATACCTGGCCTAACTCAATCTCAAAAGTTAGCTCGTGAGGAGAGGATTGCTCGAG</gDNA_template>
            <first_frame> G  N  T  N  T  L  A  G  N  V  P  P  K  A  N  L  G  D  L  R  G  L  A  R  G  L  D  G  L  N  S  S  A  M  I  D  G  G  D  F  D  G  A  K  A  Y  K  D  S  K  V  C  N  M  L  T  M  Q  E  F  H  R  R  Y  H  E  E  T  G  I  T  F  A  S  L  Y  P  G  C  I  A  T  T  G  L  F  R  E  H  I  P  L  F  R  L  L  F  P  P  F  Q  K  F  I  T  K  G  F  V  S  E  A  E  S  G  K  R  L  A  Q  V  I  F  I  S  V  S  F  T  Y  N  H  *  T  L  S  T  I  T  V  T  V  K  I  R  Y  L  A  *  L  N  L  K  S  *  L  V  R  R  G  L  L  E </first_frame>
            <second_frame>  E  T  Q  T  H  W  L  E  M  Y  L  Q  R  P  T  S  G  T  *  G  V  *  Q  G  G  S  M  D  L  T  A  Q  P  *  L  T  V  V  T  L  M  V  P  K  L  T  K  T  A  R  F  A  I  C  S  L  C  R  N  S  I  D  D  T  T  K  R  L  A  S  H  L  P  P  Y  T  L  A  A  S  R  Q  Q  G  Y  S  G  S  I  S  P  C  L  G  S  F  S  L  H  S  R  S  L  S  P  K  D  S  S  P  R  Q  N  L  E  R  D  L  H  R  *  Y  L  L  V  S  V  S  R  I  T  T  E  L  Y  P  L  *  Q  *  P  *  R  *  D  T  W  P  N  S  I  S  K  V  S  S  *  G  E  D  C  S   </second_frame>
            <third_frame>   K  H  K  H  I  G  W  K  C  T  S  K  G  Q  P  R  G  L  E  G  F  S  K  G  A  R  W  T  *  Q  L  S  H  D  *  R  W  *  L  *  W  C  Q  S  L  Q  R  Q  Q  G  L  Q  Y  A  H  Y  A  G  I  P  *  T  I  P  R  R  D  W  H  H  I  C  L  P  I  P  W  L  H  R  D  N  R  A  I  Q  G  A  Y  P  L  V  *  A  P  F  P  S  I  P  E  V  Y  H  Q  R  I  R  L  R  G  R  I  W  K  E  T  C  T  G  N  I  Y  *  C  Q  F  H  V  *  P  L  N  F  I  H  Y  N  S  N  R  K  D  K  I  P  G  L  T  Q  S  Q  K  L  A  R  E  E  R  I  A  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61368" stop="61766"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNTNTLAGNVPPKANLGDLRGLARGLDGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKFITKGFVSEAESGKRLAQVIFISVSFTYNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="62571" PGL_stop="61663"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62571" e_stop="62571"/>
            <exon e_start="62511" e_stop="62066"/>
            <exon e_start="61725" e_stop="61663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.359" acc_prob="0.841" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.000" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62571" e_stop="62571" e_length="1"/>
          </exon>
          <intron i_serial="1" don_prob="0.359" acc_prob="0.841">
            <gDNA_intron_boundary i_start="62570" i_stop="62512" i_length="59"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="62511" e_stop="62066" e_length="446"/>
          </exon>
          <intron i_serial="2" don_prob="0.904" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62065" i_stop="61726" i_length="340"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61725" e_stop="61663" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62571" stop="62571"/>
              <exon start="62511" stop="62066"/>
              <exon start="61725" stop="61663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>T : TGAATACGGAATCATAATTCACATGATCATTCATACTGGAAATTGTTGAGTGAGTCATTGATCGAACATGACGCTTGTTGGGTGGACTTAAAGTTGTGAGCGCTATAATTGTTGGCGTGTTGGTAAGCGCTCGATTCTAAAAGGATGAATGATATTTATTCCTAACTCAAAAATTTTACGAAGTGACAACTTTTTAACTACAACAAAACAGACTCGATTCAAATTCTCCTTCATCAACTCCTTTTTCGTGTTCGTCTTGGTGATGGTTGAACTCAATCAGCAAAAAATCTAAGCCAATCCCACGAGTTTCTCACTGACTTCCCACACTTTACGCGCTTTCTCAACGTCACTAGCTTCTTCTGACAACTGGTTCTCAAAGGAGGAAGAGTTCTTGTTCCAGCTCCAGTACACACCTGATTTTGTAAGACTTGGATCACTAACAACCT : GTGCAAGTCTCTTTCCAGATTCTGCCTCGGAGACGAATCCTTTGGTGATAAACTTCTGGAATG</gDNA_template>
            <first_frame>  : L  N  T  E  S  *  F  T  *  S  F  I  L  E  I  V  E  *  V  I  D  R  T  *  R  L  L  G  G  L  K  V  V  S  A  I  I  V  G  V  L  V  S  A  R  F  *  K  D  E  *  Y  L  F  L  T  Q  K  F  Y  E  V  T  T  F  *  L  Q  Q  N  R  L  D  S  N  S  P  S  S  T  P  F  S  C  S  S  W  *  W  L  N  S  I  S  K  K  S  K  P  I  P  R  V  S  H  *  L  P  T  L  Y  A  L  S  Q  R  H  *  L  L  L  T  T  G  S  Q  R  R  K  S  S  C  S  S  S  S  T  H  L  I  L  *  D  L  D  H  *  Q  P  :  V  Q  V  S  F  Q  I  L  P  R  R  R  I  L  W  *  *  T  S  G  M </first_frame>
            <second_frame>  :  *  I  R  N  H  N  S  H  D  H  S  Y  W  K  L  L  S  E  S  L  I  E  H  D  A  C  W  V  D  L  K  L  *  A  L  *  L  L  A  C  W  *  A  L  D  S  K  R  M  N  D  I  Y  S  *  L  K  N  F  T  K  *  Q  L  F  N  Y  N  K  T  D  S  I  Q  I  L  L  H  Q  L  L  F  R  V  R  L  G  D  G  *  T  Q  S  A  K  N  L  S  Q  S  H  E  F  L  T  D  F  P  H  F  T  R  F  L  N  V  T  S  F  F  *  Q  L  V  L  K  G  G  R  V  L  V  P  A  P  V  H  T  *  F  C  K  T  W  I  T  N  N  L :   C  K  S  L  S  R  F  C  L  G  D  E  S  F  G  D  K  L  L  E   </second_frame>
            <third_frame>  :   E  Y  G  I  I  I  H  M  I  I  H  T  G  N  C  *  V  S  H  *  S  N  M  T  L  V  G  W  T  *  S  C  E  R  Y  N  C  W  R  V  G  K  R  S  I  L  K  G  *  M  I  F  I  P  N  S  K  I  L  R  S  D  N  F  L  T  T  T  K  Q  T  R  F  K  F  S  F  I  N  S  F  F  V  F  V  L  V  M  V  E  L  N  Q  Q  K  I  *  A  N  P  T  S  F  S  L  T  S  H  T  L  R  A  F  S  T  S  L  A  S  S  D  N  W  F  S  K  E  E  E  F  L  F  Q  L  Q  Y  T  P  D  F  V  R  L  G  S  L  T  T   : C  A  S  L  F  P  D  S  A  S  E  T  N  P  L  V  I  N  F  W  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62219" stop="62066"/>
                    <exon start="61725" stop="61664"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANPTSFSLTSHTLRAFSTSLASSDNWFSKEEEFLFQLQYTPDFVRLGSLTTCASLFPDSASETNPLVINFWN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="65013" PGL_stop="62718"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65013" e_stop="64766"/>
            <exon e_start="64020" e_stop="63777"/>
            <exon e_start="63380" e_stop="63260"/>
            <exon e_start="63085" e_stop="62718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.367" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.940" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65013" e_stop="64766" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.367">
            <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64020" e_stop="63777" e_length="244"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.994">
            <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63380" e_stop="63260" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.940">
            <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="63085" e_stop="62718" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65013" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65013" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="63072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65012" stop="64766"/>
              <exon start="64020" stop="63783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65010" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="63012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65009" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65008" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65008" stop="64766"/>
              <exon start="64020" stop="63808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65005" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="63049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65005" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65003" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65003" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64996" stop="64766"/>
              <exon start="64020" stop="63784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64995" stop="64766"/>
              <exon start="64020" stop="63795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64994" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="63041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64994" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64994" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64994" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64994" stop="64766"/>
              <exon start="64020" stop="63942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64993" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64993" stop="64766"/>
              <exon start="64020" stop="63784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64992" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64991" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64991" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64987" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="63066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64986" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64982" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="63000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64982" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="63030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64982" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="63047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64982" stop="64766"/>
              <exon start="64020" stop="63882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64982" stop="64766"/>
              <exon start="64020" stop="63916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64981" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64980" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64980" stop="64766"/>
              <exon start="64020" stop="63844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64977" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64976" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="63033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64975" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64975" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64968" stop="64766"/>
              <exon start="64020" stop="63788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64967" stop="64766"/>
              <exon start="64020" stop="63845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64959" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="63049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64958" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64958" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64957" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="63066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64957" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64953" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64916" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="63033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64916" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64905" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64871" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64871" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64849" stop="64766"/>
              <exon start="64020" stop="63855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64812" stop="64766"/>
              <exon start="64020" stop="63848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64792" stop="64766"/>
              <exon start="64020" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64017" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64003" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261248" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63984" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253728" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63931" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397455" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63910" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256652" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63865" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254415" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63861" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251552" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63861" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259703" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63850" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276866" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274725" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63370" stop="63260"/>
              <exon start="63085" stop="62738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63002" stop="62747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397335" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG : GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG : GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG : GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTTATTCGATGACATATTCGAGC</gDNA_template>
            <first_frame> I  S  S  *  S  *  K  K  Q  K  K  K  Q  T  M  L  A  I  F  H  K  A  F  A  H  P  P  E  E  L  N  S  P  A  S  K  K  C  L  L  P  Q  Q  T  L  Q  K  F  V  S  T  R  P  F  D  T  S  Y  V  T  F  G  D  V  A  A  L  A  F  V  R  P  N  C  T  S  L  L  N  H  K  Q  R :   Y  F  C  G  Y  D  D  I  Y  C  L  F  M  G  S  L  N  N  L  C  A  Q  I  K  Q  Y  G  L  S  P  K  G  T  N  E  A  M  L  V  I  E  A  Y  R  T  L  R  D  R  G  P  Y  P  A  D  Q  V  I  K  D  F  E  G  S  F  A  F  V  I  Y  D  S  K  T  G  T  V  F  V  A  L  :  G  S  D  G  G  V  K  L  F  W  G  I  A  A  D  G  S  V  V  I  S  D  D  V  E  V  I  K  A  G  C  A  K  S  F  A  P  F  P  T   : G  C  M  F  H  S  E  K  G  L  M  N  F  E  H  P  M  N  K  M  R  A  M  P  R  V  D  S  E  G  V  M  C  G  A  N  F  K  V  D  M  Y  S  R  V  N  S  I  P  R  V  G  S  E  A  N  W  S  D  W  N  T  S  Y  *  V  D  S  L  Q  F  S  N  F  L  *  C  L  F  C  F  G  *  I  F  E  F  V  L  G  L  V  S  F  L  Y  V  L  C  T  C  V  *  R  L  K  N  K  *  N  I  R  N  D  S  A  Y  S  M  T  Y  S  S </first_frame>
            <second_frame>  F  H  L  E  A  K  K  N  K  K  K  N  K  R  C  W  L  Y  F  T  R  H  L  L  I  L  L  K  N  *  I  V  L  H  Q  K  N  V  Y  F  H  N  K  R  Y  K  N  S  Y  R  L  V  H  L  T  P  L  M  L  L  L  E  M  L  L  L  L  L  L  F  V  L  I  A  P  P  C  S  I  T  N  K   : G  I  F  V  V  M  M  I  F  T  V  C  S  W  G  V  *  T  I  C  V  H  K  S  N  N  M  G  Y  H  Q  K  V  Q  M  K  P  C  *  S  L  K  P  T  G  H  L  E  T  G  D  L  I  Q  L  I  K  L  L  R  I  L  K  E  V  L  L  L  L  S  M  I  V  K  L  E  L  Y  L  L  L  W :   V  Q  M  V  G  *  S  Y  F  G  V  L  L  L  M  D  L  W  *  F  L  M  M  *  R  L  L  K  L  D  V  L  S  H  L  H  P  F  P  Q  :  V  V  C  S  I  V  R  K  D  *  *  I  S  S  T  R  *  T  R  *  G  L  C  Q  E  *  I  V  K  G  *  C  V  E  P  T  S  K  W  I  C  I  Q  E  L  I  A  S  L  E  L  A  V  K  L  T  G  L  T  G  T  L  L  T  K  S  I  L  C  N  F  Q  T  S  F  S  V  C  S  V  L  V  R  F  S  S  L  F  *  V  W  F  L  S  C  T  C  F  A  P  V  Y  N  A  *  K  I  N  E  T  L  E  M  I  Q  L  I  R  *  H  I  R   </second_frame>
            <third_frame>   F  I  L  K  L  K  K  T  K  K  K  T  N  D  V  G  Y  I  S  Q  G  I  C  S  S  S  *  R  I  K  *  S  C  I  K  K  M  F  T  S  T  T  N  A  T  K  I  R  I  D  S  S  I  *  H  L  L  C  Y  F  W  R  C  C  C  S  C  F  C  S  S  *  L  H  L  L  A  Q  S  Q  T  K  :  V  F  L  W  L  *  *  Y  L  L  F  V  H  G  E  F  E  Q  F  V  C  T  N  Q  T  I  W  A  I  T  K  R  Y  K  *  S  H  A  S  H  *  S  L  Q  D  T  *  R  Q  G  T  L  S  S  *  S  S  Y  *  G  F  *  R  K  F  C  F  C  Y  L  *  *  *  N  W  N  C  I  C  C  F   : G  F  R  W  W  G  E  V  I  L  G  Y  C  C  *  W  I  C  G  D  F  *  *  C  R  G  Y  *  S  W  M  C  *  V  I  C  T  L  S  H  R :   L  Y  V  P  *  *  E  R  T  N  E  F  R  A  P  D  E  Q  D  E  G  Y  A  K  S  R  *  *  R  G  N  V  W  S  Q  L  Q  S  G  Y  V  F  K  S  *  *  H  P  *  S  W  Q  *  S  *  L  V  *  L  E  H  F  L  L  S  R  F  S  A  I  F  K  L  P  L  V  F  V  L  F  W  L  D  F  R  V  C  F  R  F  G  F  F  P  V  R  A  L  H  L  C  I  T  L  E  K  *  M  K  H  *  K  *  F  S  L  F  D  D  I  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64995" stop="64766"/>
                    <exon start="64020" stop="63777"/>
                    <exon start="63380" stop="63260"/>
                    <exon start="63085" stop="62892"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKQKKKQTMLAIFHKAFAHPPEELNSPASKKCLLPQQTLQKFVSTRPFDTSYVTFGDVAALAFVRPNCTSLLNHKQRYFCGYDDIYCLFMGSLNNLCAQIKQYGLSPKGTNEAMLVIEAYRTLRDRGPYPADQVIKDFEGSFAFVIYDSKTGTVFVALGSDGGVKLFWGIAADGSVVISDDVEVIKAGCAKSFAPFPTGCMFHSEKGLMNFEHPMNKMRAMPRVDSEGVMCGANFKVDMYSRVNSIPRVGSEANWSDWNTSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64022" e_stop="63777"/>
            <exon e_start="63380" e_stop="63260"/>
            <exon e_start="63085" e_stop="62728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.940" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64022" e_stop="63777" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.994">
            <gDNA_intron_boundary i_start="63776" i_stop="63381" i_length="396"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63380" e_stop="63260" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.940">
            <gDNA_intron_boundary i_start="63259" i_stop="63086" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63085" e_stop="62728" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64022" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253978" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64017" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64003" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261248" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63984" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253728" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63931" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397455" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63910" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256652" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63865" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254415" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63861" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251552" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63861" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259703" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63850" stop="63777"/>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276866" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63380" stop="63260"/>
              <exon start="63085" stop="62728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274725" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63370" stop="63260"/>
              <exon start="63085" stop="62738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63002" stop="62747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397335" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG : GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG : GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTTATTCGATGAC</gDNA_template>
            <first_frame> R  Y  F  C  G  Y  D  D  I  Y  C  L  F  M  G  S  L  N  N  L  C  A  Q  I  K  Q  Y  G  L  S  P  K  G  T  N  E  A  M  L  V  I  E  A  Y  R  T  L  R  D  R  G  P  Y  P  A  D  Q  V  I  K  D  F  E  G  S  F  A  F  V  I  Y  D  S  K  T  G  T  V  F  V  A  L  :  G  S  D  G  G  V  K  L  F  W  G  I  A  A  D  G  S  V  V  I  S  D  D  V  E  V  I  K  A  G  C  A  K  S  F  A  P  F  P  T   : G  C  M  F  H  S  E  K  G  L  M  N  F  E  H  P  M  N  K  M  R  A  M  P  R  V  D  S  E  G  V  M  C  G  A  N  F  K  V  D  M  Y  S  R  V  N  S  I  P  R  V  G  S  E  A  N  W  S  D  W  N  T  S  Y  *  V  D  S  L  Q  F  S  N  F  L  *  C  L  F  C  F  G  *  I  F  E  F  V  L  G  L  V  S  F  L  Y  V  L  C  T  C  V  *  R  L  K  N  K  *  N  I  R  N  D  S  A  Y  S  M   </first_frame>
            <second_frame>  G  I  F  V  V  M  M  I  F  T  V  C  S  W  G  V  *  T  I  C  V  H  K  S  N  N  M  G  Y  H  Q  K  V  Q  M  K  P  C  *  S  L  K  P  T  G  H  L  E  T  G  D  L  I  Q  L  I  K  L  L  R  I  L  K  E  V  L  L  L  L  S  M  I  V  K  L  E  L  Y  L  L  L  W :   V  Q  M  V  G  *  S  Y  F  G  V  L  L  L  M  D  L  W  *  F  L  M  M  *  R  L  L  K  L  D  V  L  S  H  L  H  P  F  P  Q  :  V  V  C  S  I  V  R  K  D  *  *  I  S  S  T  R  *  T  R  *  G  L  C  Q  E  *  I  V  K  G  *  C  V  E  P  T  S  K  W  I  C  I  Q  E  L  I  A  S  L  E  L  A  V  K  L  T  G  L  T  G  T  L  L  T  K  S  I  L  C  N  F  Q  T  S  F  S  V  C  S  V  L  V  R  F  S  S  L  F  *  V  W  F  L  S  C  T  C  F  A  P  V  Y  N  A  *  K  I  N  E  T  L  E  M  I  Q  L  I  R  *  </second_frame>
            <third_frame>   V  F  L  W  L  *  *  Y  L  L  F  V  H  G  E  F  E  Q  F  V  C  T  N  Q  T  I  W  A  I  T  K  R  Y  K  *  S  H  A  S  H  *  S  L  Q  D  T  *  R  Q  G  T  L  S  S  *  S  S  Y  *  G  F  *  R  K  F  C  F  C  Y  L  *  *  *  N  W  N  C  I  C  C  F   : G  F  R  W  W  G  E  V  I  L  G  Y  C  C  *  W  I  C  G  D  F  *  *  C  R  G  Y  *  S  W  M  C  *  V  I  C  T  L  S  H  R :   L  Y  V  P  *  *  E  R  T  N  E  F  R  A  P  D  E  Q  D  E  G  Y  A  K  S  R  *  *  R  G  N  V  W  S  Q  L  Q  S  G  Y  V  F  K  S  *  *  H  P  *  S  W  Q  *  S  *  L  V  *  L  E  H  F  L  L  S  R  F  S  A  I  F  K  L  P  L  V  F  V  L  F  W  L  D  F  R  V  C  F  R  F  G  F  F  P  V  R  A  L  H  L  C  I  T  L  E  K  *  M  K  H  *  K  *  F  S  L  F  D  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64022" stop="63777"/>
                    <exon start="63380" stop="63260"/>
                    <exon start="63085" stop="62892"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYFCGYDDIYCLFMGSLNNLCAQIKQYGLSPKGTNEAMLVIEAYRTLRDRGPYPADQVIKDFEGSFAFVIYDSKTGTVFVALGSDGGVKLFWGIAADGSVVISDDVEVIKAGCAKSFAPFPTGCMFHSEKGLMNFEHPMNKMRAMPRVDSEGVMCGANFKVDMYSRVNSIPRVGSEANWSDWNTSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="68202" PGL_stop="68850"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68202" e_stop="68266"/>
            <exon e_start="68348" e_stop="68850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68202" e_stop="68266" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68267" i_stop="68347" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68348" e_stop="68850" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68202" stop="68266"/>
              <exon start="68348" stop="68850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266711" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATG : GTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTACAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTCTATTGTTTTGGGACTAAATCCTTCAACTACACAAATTATCTCAAACCAAGCTCATATCATGACTGCTTTGGCTCATTCTCTCAATCATGAGTGAAGACATCATAATAATCAATTTATAATCTATCATTTTTAGTATTATTAATTTGAGATGATATTACCAAACATGTTCAAGTTGATTAAACACAAGAATGTAATTGAATAAATTGTTTTAGTAAAAAGGAAAGTTATGTTAT</gDNA_template>
            <first_frame> F  I  S  N  H  L  I  N  E  I  D  F  A  T  I  H  A  Y  T  D  Q  W :   L  S  G  Q  S  D  E  A  Q  L  A  W  M  E  K  W  I  R  S  H  W  E  D  A  R  N  I  L  K  K  P  L  V  L  A  E  F  G  K  S  S  R  S  G  E  G  S  R  D  I  F  M  S  S  V  Y  R  N  V  Y  N  L  A  K  E  G  G  T  M  G  G  S  L  V  W  Q  L  M  A  H  G  M  E  N  Y  D  D  G  Y  S  I  V  L  G  L  N  P  S  T  T  Q  I  I  S  N  Q  A  H  I  M  T  A  L  A  H  S  L  N  H  E  *  R  H  H  N  N  Q  F  I  I  Y  H  F  *  Y  Y  *  F  E  M  I  L  P  N  M  F  K  L  I  K  H  K  N  V  I  E  *  I  V  L  V  K  R  K  V  M  L  </first_frame>
            <second_frame>  S  L  V  T  I  L  S  M  K  L  I  L  L  Q  S  M  H  T  L  I  N   : G  Y  L  D  K  V  M  K  H  N  W  R  G  W  K  S  G  *  E  V  I  G  K  M  Q  E  I  Y  *  R  N  L  *  C  L  L  N  L  E  S  L  V  D  Q  V  K  D  Q  E  I  Y  L  *  V  V  C  T  E  M  C  I  I  W  Q  K  K  V  E  Q  W  E  E  V  *  Y  G  N  *  W  H  M  E  W  R  I  M  M  M  V  I  L  L  F  W  D  *  I  L  Q  L  H  K  L  S  Q  T  K  L  I  S  *  L  L  W  L  I  L  S  I  M  S  E  D  I  I  I  I  N  L  *  S  I  I  F  S  I  I  N  L  R  *  Y  Y  Q  T  C  S  S  *  L  N  T  R  M  *  L  N  K  L  F  *  *  K  G  K  L  C  Y </second_frame>
            <third_frame>   H  *  *  P  S  Y  Q  *  N  *  F  C  Y  N  P  C  I  H  *  S  M  :  V  I  W  T  K  *  *  S  T  I  G  V  D  G  K  V  D  K  K  S  L  G  R  C  K  K  Y  I  E  E  T  F  S  A  C  *  I  W  K  V  *  *  I  R  *  R  I  K  R  Y  I  Y  E  *  C  V  Q  K  C  V  *  F  G  K  R  R  W  N  N  G  R  K  F  S  M  A  T  N  G  T  W  N  G  E  L  *  *  W  L  F  Y  C  F  G  T  K  S  F  N  Y  T  N  Y  L  K  P  S  S  Y  H  D  C  F  G  S  F  S  Q  S  *  V  K  T  S  *  *  S  I  Y  N  L  S  F  L  V  L  L  I  *  D  D  I  T  K  H  V  Q  V  D  *  T  Q  E  C  N  *  I  N  C  F  S  K  K  E  S  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68202" stop="68266"/>
                    <exon start="68348" stop="68711"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FISNHLINEIDFATIHAYTDQWLSGQSDEAQLAWMEKWIRSHWEDARNILKKPLVLAEFGKSSRSGEGSRDIFMSSVYRNVYNLAKEGGTMGGSLVWQLMAHGMENYDDGYSIVLGLNPSTTQIISNQAHIMTALAHSLNHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="76165" PGL_stop="78970"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76330" e_stop="76825"/>
            <exon e_start="77488" e_stop="77492"/>
            <exon e_start="78220" e_stop="78417"/>
            <exon e_start="78499" e_stop="78970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.600"/>
          <exon-intron don_prob="0.972" acc_prob="0.935" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="76330" e_stop="76825" e_length="496"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="76826" i_stop="77487" i_length="662"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="77488" e_stop="77492" e_length="5"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="77493" i_stop="78219" i_length="727"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="78220" e_stop="78417" e_length="198"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.935">
            <gDNA_intron_boundary i_start="78418" i_stop="78498" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78499" e_stop="78970" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76330" stop="76825"/>
              <exon start="77488" stop="77492"/>
              <exon start="78220" stop="78417"/>
              <exon start="78499" stop="78717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76332" stop="76825"/>
              <exon start="77488" stop="77492"/>
              <exon start="78220" stop="78417"/>
              <exon start="78499" stop="78655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76348" stop="76825"/>
              <exon start="77488" stop="77492"/>
              <exon start="78220" stop="78417"/>
              <exon start="78499" stop="78690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78551" stop="78970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225197" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGAGAAGAGGGAGAAACCCTTCCCCCCTCTCCAAGCCGCCTCCTTCTTCTCCCCTCTCCATCTCCTCTTCTCTCTTCCTCCCAAACCCTTCCTCCTCTCCCTCTTTTCCGTCAGCCCCTCTCACCCTTTCCCTCCCTCTTTCCCGTTTCTCCCCCTTCCTCTTCCTCTCCTCTCTTCTATCTCCTCCATTCTCTCTTTTTCCGGCAAAGCAGCGACAACAACCCAGCAGCAGCTGAGACAGCCTACAACAACAGCTCCAACAGCCGGCGAGCCAAGCAGCGCCGCCCTCTCCCTCTTCTCCGGCAAAGCAGCGACAGCAACCGGCAAAAGCTCCGGCTGAAGCAGCAACAACAAACGACGGAAATAGCAGCGCCACCACTCGCATACTTATCCGGTGAAGACACCATCAGCGTCAGCAGCTCCAGGAGGCGAGCACCACAGATGATATCAACTCCGACCTTGTTAGAGAAAACATTCAGATCTGTCCAAAAG : GGCCT : GGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTCGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATG : GGTATCTGAACAAAGTGATGAAGCACAATTGGTGTGGATGGAGAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTGAAGAAATAGGCATTACATGACACAAGGGCAAATTAGTCATTACTGTTTAATCAAGTTGGTTAAAGTTGTTAAGTGTAGTTAGTTAGAAATTTGTTAGGAAGTTAGTTAGTAAAACAGTATATGTACTGCATCAAGTTACAATACAATGTATTCAGTTTGTATTCTTCTTTTTTACAAAATAAACTTCTTCTCTCTTTTCCTT</gDNA_template>
            <first_frame> R  K  R  R  G  R  N  P  S  P  L  S  K  P  P  P  S  S  P  L  S  I  S  S  S  L  F  L  P  N  P  S  S  S  P  S  F  P  S  A  P  L  T  L  S  L  P  L  S  R  F  S  P  F  L  F  L  S  S  L  L  S  P  P  F  S  L  F  P  A  K  Q  R  Q  Q  P  S  S  S  *  D  S  L  Q  Q  Q  L  Q  Q  P  A  S  Q  A  A  P  P  S  P  S  S  P  A  K  Q  R  Q  Q  P  A  K  A  P  A  E  A  A  T  T  N  D  G  N  S  S  A  T  T  R  I  L  I  R  *  R  H  H  Q  R  Q  Q  L  Q  E  A  S  T  T  D  D  I  N  S  D  L  V  R  E  N  I  Q  I  C  P  K   : G  P  :  G  W  V  Q  E  M  A  S  F  V  K  S  L  D  N  K  L  E  V  E  I  E  G  F  Y  G  D  S  I  P  E  R  K  S  V  N  P  G  Y  Q  V  R  T  N  F  F  S  N  Q  L  I  N  E  I  D  F  C  Y  N  P  F  I  H  *  P  M  :  G  I  *  T  K  *  *  S  T  I  G  V  D  G  E  V  D  N  K  S  L  G  R  C  K  K  Y  I  E  E  T  F  S  A  C  *  I  W  K  V  *  *  I  R  *  R  I  K  R  Y  I  Y  E  *  C  V  *  K  C  V  *  F  G  K  R  R  W  N  N  G  R  K  F  S  M  A  T  N  G  T  W  N  G  E  L  *  *  W  L  L  K  K  *  A  L  H  D  T  R  A  N  *  S  L  L  F  N  Q  V  G  *  S  C  *  V  *  L  V  R  N  L  L  G  S  *  L  V  K  Q  Y  M  Y  C  I  K  L  Q  Y  N  V  F  S  L  Y  S  S  F  L  Q  N  K  L  L  L  S  F  P  </first_frame>
            <second_frame>  E  R  E  E  G  E  T  L  P  P  S  P  S  R  L  L  L  L  P  S  P  S  P  L  L  S  S  S  Q  T  L  P  P  L  P  L  F  R  Q  P  L  S  P  F  P  S  L  F  P  V  S  P  P  S  S  S  S  P  L  F  Y  L  L  H  S  L  F  F  R  Q  S  S  D  N  N  P  A  A  A  E  T  A  Y  N  N  S  S  N  S  R  R  A  K  Q  R  R  P  L  P  L  L  R  Q  S  S  D  S  N  R  Q  K  L  R  L  K  Q  Q  Q  Q  T  T  E  I  A  A  P  P  L  A  Y  L  S  G  E  D  T  I  S  V  S  S  S  R  R  R  A  P  Q  M  I  S  T  P  T  L  L  E  K  T  F  R  S  V  Q  K  :  G  L :   V  G  F  K  K  W  R  V  L  *  S  H  *  I  T  N  W  K  L  K  L  K  D  F  M  V  I  Q  F  L  K  G  N  Q  *  I  L  V  I  K  F  E  Q  I  S  L  V  T  S  L  S  M  K  L  I  F  A  T  I  R  S  Y  I  D  Q  W :   V  S  E  Q  S  D  E  A  Q  L  V  W  M  E  K  W  I  T  S  H  W  E  D  A  R  N  I  L  K  K  P  L  V  L  A  E  F  G  K  S  S  R  S  G  E  G  S  R  D  I  F  M  S  S  V  Y  R  N  V  Y  N  L  A  K  E  G  G  T  M  G  G  S  L  V  W  Q  L  M  A  H  G  M  E  N  Y  D  D  G  Y  *  R  N  R  H  Y  M  T  Q  G  Q  I  S  H  Y  C  L  I  K  L  V  K  V  V  K  C  S  *  L  E  I  C  *  E  V  S  *  *  N  S  I  C  T  A  S  S  Y  N  T  M  Y  S  V  C  I  L  L  F  Y  K  I  N  F  F  S  L  F  L </second_frame>
            <third_frame>   K  E  K  R  E  K  P  F  P  P  L  Q  A  A  S  F  F  S  P  L  H  L  L  F  S  L  P  P  K  P  F  L  L  S  L  F  S  V  S  P  S  H  P  F  P  P  S  F  P  F  L  P  L  P  L  P  L  L  S  S  I  S  S  I  L  S  F  S  G  K  A  A  T  T  T  Q  Q  Q  L  R  Q  P  T  T  T  A  P  T  A  G  E  P  S  S  A  A  L  S  L  F  S  G  K  A  A  T  A  T  G  K  S  S  G  *  S  S  N  N  K  R  R  K  *  Q  R  H  H  S  H  T  Y  P  V  K  T  P  S  A  S  A  A  P  G  G  E  H  H  R  *  Y  Q  L  R  P  C  *  R  K  H  S  D  L  S  K  R :   A   : W  L  G  S  R  N  G  E  F  C  E  V  I  R  *  Q  I  G  S  *  N  *  R  I  L  W  *  F  N  S  *  K  E  I  S  E  S  W  L  S  S  S  N  K  F  L  *  *  P  A  Y  Q  *  N  *  F  L  L  Q  S  V  H  T  L  T  N   : G  Y  L  N  K  V  M  K  H  N  W  C  G  W  R  S  G  *  Q  V  I  G  K  M  Q  E  I  Y  *  R  N  L  *  C  L  L  N  L  E  S  L  V  D  Q  V  K  D  Q  E  I  Y  L  *  V  V  C  I  E  M  C  I  I  W  Q  K  K  V  E  Q  W  E  E  V  *  Y  G  N  *  W  H  M  E  W  R  I  M  M  M  V  I  E  E  I  G  I  T  *  H  K  G  K  L  V  I  T  V  *  S  S  W  L  K  L  L  S  V  V  S  *  K  F  V  R  K  L  V  S  K  T  V  Y  V  L  H  Q  V  T  I  Q  C  I  Q  F  V  F  F  F  F  T  K  *  T  S  S  L  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76331" stop="76825"/>
                    <exon start="77488" stop="77492"/>
                    <exon start="78220" stop="78250"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EREEGETLPPSPSRLLLLPSPSPLLSSSQTLPPLPLFRQPLSPFPSLFPVSPPSSSSPLFYLLHSLFFRQSSDNNPAAAETAYNNSSNSRRAKQRRPLPLLRQSSDSNRQKLRLKQQQQTTEIAAPPLAYLSGEDTISVSSSRRRAPQMISTPTLLEKTFRSVQKGLVGFKKWRVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78326" stop="78417"/>
                    <exon start="78499" stop="78769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILVIKFEQISLVTSLSMKLIFATIRSYIDQWVSEQSDEAQLVWMEKWITSHWEDARNILKKPLVLAEFGKSSRSGEGSRDIFMSSVYRNVYNLAKEGGTMGGSLVWQLMAHGMENYDDGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76165" e_stop="76209"/>
            <exon e_start="78220" e_stop="78417"/>
            <exon e_start="78499" e_stop="78970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.956"/>
          <exon-intron don_prob="0.972" acc_prob="0.935" e_score="0.848"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="76165" e_stop="76209" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76210" i_stop="78219" i_length="2010"/>
          </intron>
          <exon e_serial="2" e_score="0.848">
            <gDNA_exon_boundary e_start="78220" e_stop="78417" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.935">
            <gDNA_intron_boundary i_start="78418" i_stop="78498" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78499" e_stop="78970" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76165" stop="76209"/>
              <exon start="78220" stop="78417"/>
              <exon start="78499" stop="78761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78551" stop="78970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225197" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGAGCCTCGCGATCAAGCTGACTATTCAGGAAAAACTGTTGTT : GGTTGGGTTCAAGAAATGGCGAGTTTTGTGAAGTCATTAGATAACAAATTGGAAGTTGAAATTGAAGGATTTTATGGTGATTCAATTCCTGAAAGGAAATCAGTGAATCCTGGTTATCAAGTTCGAACAAATTTCTTTAGTAACCAGCTTATCAATGAAATTGATTTTTGCTACAATCCGTTCATACATTGACCAATG : GGTATCTGAACAAAGTGATGAAGCACAATTGGTGTGGATGGAGAAGTGGATAACAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTGAAGAAATAGGCATTACATGACACAAGGGCAAATTAGTCATTACTGTTTAATCAAGTTGGTTAAAGTTGTTAAGTGTAGTTAGTTAGAAATTTGTTAGGAAGTTAGTTAGTAAAACAGTATATGTACTGCATCAAGTTACAATACAATGTATTCAGTTTGTATTCTTCTTTTTTACAAAATAAACTTCTTCTCTCTTTTCCTT</gDNA_template>
            <first_frame> N  E  P  R  D  Q  A  D  Y  S  G  K  T  V  V  :  G  W  V  Q  E  M  A  S  F  V  K  S  L  D  N  K  L  E  V  E  I  E  G  F  Y  G  D  S  I  P  E  R  K  S  V  N  P  G  Y  Q  V  R  T  N  F  F  S  N  Q  L  I  N  E  I  D  F  C  Y  N  P  F  I  H  *  P  M  :  G  I  *  T  K  *  *  S  T  I  G  V  D  G  E  V  D  N  K  S  L  G  R  C  K  K  Y  I  E  E  T  F  S  A  C  *  I  W  K  V  *  *  I  R  *  R  I  K  R  Y  I  Y  E  *  C  V  *  K  C  V  *  F  G  K  R  R  W  N  N  G  R  K  F  S  M  A  T  N  G  T  W  N  G  E  L  *  *  W  L  L  K  K  *  A  L  H  D  T  R  A  N  *  S  L  L  F  N  Q  V  G  *  S  C  *  V  *  L  V  R  N  L  L  G  S  *  L  V  K  Q  Y  M  Y  C  I  K  L  Q  Y  N  V  F  S  L  Y  S  S  F  L  Q  N  K  L  L  L  S  F  P  </first_frame>
            <second_frame>  M  S  L  A  I  K  L  T  I  Q  E  K  L  L  L :   V  G  F  K  K  W  R  V  L  *  S  H  *  I  T  N  W  K  L  K  L  K  D  F  M  V  I  Q  F  L  K  G  N  Q  *  I  L  V  I  K  F  E  Q  I  S  L  V  T  S  L  S  M  K  L  I  F  A  T  I  R  S  Y  I  D  Q  W :   V  S  E  Q  S  D  E  A  Q  L  V  W  M  E  K  W  I  T  S  H  W  E  D  A  R  N  I  L  K  K  P  L  V  L  A  E  F  G  K  S  S  R  S  G  E  G  S  R  D  I  F  M  S  S  V  Y  R  N  V  Y  N  L  A  K  E  G  G  T  M  G  G  S  L  V  W  Q  L  M  A  H  G  M  E  N  Y  D  D  G  Y  *  R  N  R  H  Y  M  T  Q  G  Q  I  S  H  Y  C  L  I  K  L  V  K  V  V  K  C  S  *  L  E  I  C  *  E  V  S  *  *  N  S  I  C  T  A  S  S  Y  N  T  M  Y  S  V  C  I  L  L  F  Y  K  I  N  F  F  S  L  F  L </second_frame>
            <third_frame>   *  A  S  R  S  S  *  L  F  R  K  N  C  C   : W  L  G  S  R  N  G  E  F  C  E  V  I  R  *  Q  I  G  S  *  N  *  R  I  L  W  *  F  N  S  *  K  E  I  S  E  S  W  L  S  S  S  N  K  F  L  *  *  P  A  Y  Q  *  N  *  F  L  L  Q  S  V  H  T  L  T  N   : G  Y  L  N  K  V  M  K  H  N  W  C  G  W  R  S  G  *  Q  V  I  G  K  M  Q  E  I  Y  *  R  N  L  *  C  L  L  N  L  E  S  L  V  D  Q  V  K  D  Q  E  I  Y  L  *  V  V  C  I  E  M  C  I  I  W  Q  K  K  V  E  Q  W  E  E  V  *  Y  G  N  *  W  H  M  E  W  R  I  M  M  M  V  I  E  E  I  G  I  T  *  H  K  G  K  L  V  I  T  V  *  S  S  W  L  K  L  L  S  V  V  S  *  K  F  V  R  K  L  V  S  K  T  V  Y  V  L  H  Q  V  T  I  Q  C  I  Q  F  V  F  F  F  F  T  K  *  T  S  S  L  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78326" stop="78417"/>
                    <exon start="78499" stop="78769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILVIKFEQISLVTSLSMKLIFATIRSYIDQWVSEQSDEAQLVWMEKWITSHWEDARNILKKPLVLAEFGKSSRSGEGSRDIFMSSVYRNVYNLAKEGGTMGGSLVWQLMAHGMENYDDGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 320 chains have been computed
$ 
$ memory statistics:
$ 346192 bytes spliced alignments in total
$ 158 spliced alignments have been stored
$ 2191 bytes was the average size of a spliced alignment
$ 26368 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1648 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 402 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 12:20:26
-->
