<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-07 09:13:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336535" ref_strand="+" ref_description="SGN-U336535        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase, cyclophylin-type; identical to SP:P82869 Thylakoid lumenal 38 kDa protein, chloroplast precursor (P38) {Arabidopsis thaliana} | chr3:5248936-5252439 REVERSE | Aliases: MJK13.18(evalue: 4e-28, score=122) genbank/nr: gi|42564190|ref|NP_188171.2| peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase [Arabidopsis thaliana] (evalue: 3e-26, score=122)">
      <seq>agagagagagagaggccagaaagaaaaaaagaggagagagagagaaccccacaactcggtggcaatggctgcccacctatccacgaccattatctccccaaatctcactcatttggaccaaaataaagctttcttccagagccatcttccacttcggtccccaatttatgctacactcaatcgcattgccttgaagaagaatgcttccatggaattgacaaagaggctgactgctccttccattttgtcaacatatttggagagtacagtcaagcaatttcagagtttaatggcggcgatcattatatttactgaaattgcatctccaatacctttgcatggtttgcaagatttgtccatttcccctgccgaggcagtgctttattcccccgaaacaaaaacgctccctagaacaggagaattagctcttagaagagctatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0124D18.1" temp_strand="-" temp_description="C12SLe0124D18.1  AC217496.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0124D18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="2384" stop="181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2161" g_stop="1951" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1950" i_stop="715" i_length="1236">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="714" g_stop="481" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="445" r_length="234" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0124D18.1" gen_strand="-" ref_id="SGN-U336535" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0124D18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2161" e_stop="1951"/>
          <exon e_start="714" e_stop="481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGATAGGCTAGAAAGATAAAAAGAGGATAGAGATAGAACCTTACAACTCTGTTTCAATGGCTTCCCCTTTATCCTCTTCCATTTTCTCTCCAAATTTCACTCATTTGTACCAAAATAAAGCTTTCTTCCATAGCCATCTTCCACTTCGTTCCCCAATTTATGCTACACTCAATCGCATTGCCTTGAAGAAGAATGCTTCCATGGTTAGTTTAGTTCTGCTCAAAATTTAGATATTTTCATGTGTGAATTCTGTTAAAAATTTCATCATTCTTTTTGTGCGATGGCTTAATACATAAACAGACACTCGAACAAGCGGGCACTCCATCTTACAAAATGATCATCCAAATTTATTCAAAATTTATGTGTCACGTCAGCATTAGGTGTCCACGAGATAGGGCGGGGACAAATTGGAGTGTTTAGTTGTTAGCTGAGATCAAGTTGAAGTGTTTAGATGCATTGTGCCTTGTGTCATTCATTGTAGAATTATGAATAGTTCGATTGTATGATTCTACTCTATTTGTTTTCATTTATGTGATACGATTTTCTTTTTAGTCTGTTTCAAAAAGAATATCTTTTTTTTTCATATTGAGGAACAATTTACCAATTAATGACATGATTTGTAGCTACACAAATGTGTAAGATTTGTTTTAGATTGTAAGTTTCAATTGTCTTTATTCTAACTTAAACGCGGTATATCTAGTCAAACAGAACTGTTTTCTGATATTTAGTTTGGGCAAAGAATGCTGGTTCACCTCTAAAGTTTGATCTTTTACAAAATTTAAAGGACTGTTGGATCATCAAATGTAAGTCTTGCGATCATTTAGCGTGGGAGGAATCTGATTAGGAGGTAGAAAATGTGGAACTTTCGTGTTGGGACAAATATTAGGAATTGGTATTCCTGTTAAAGATTTGTACCATTTCATATCTTCTCAAGTGTATGAAAATGTTCATCATTGTGAAGGTTCTAGATAAGGCACGTAGTTTTCAAAGGTAAATACAACAACAACTACAAACACAGTGTAATTCTACGAGTTTGGGGAGGGTAACATGTATGCAGACGTACTCCTATATTTATGGGGTAGAGAGGTTGTTTCTGACCCTCGCAAACCCTCCTCCTTTATCTGTCTTGGGACCAGCAATGTGAACGAGTTCACACAGGCGGAGTTTGTCTTCAAAGGTAAATGTATCCATGAAATTAGTTAATGATGGAAATGCAAACTGTAACATAAGCTACCACTTTTCTGATTTTCCTTGTGACACTAGCATAATGCATTTGAAACCATATTTTGGGCTCTTTTTTTTTTCGTCGATTACATATTTGCACTTGCATAAACATCTTATTAGAGAACTCGTATTCACGATTCAGTGTTGCTTCGAAGATGATCAAAATACAATATTTATAACCCTCTCAGCTTCTTGATGGATTTTCAGTCATGCAGGAATTGACAAAGAGGCTGACTGCTCCTTCCATTTTGTCAACATATTTGGAGAGTACAGTCAAGCAATTTCAGAGTTTAATGGCGGTGATCATTATATTTACTGAAATTGCATCTCCAATACCTTTGTATGGTTTGCAAGATTTGTCCATTTCTCCTGCCGAGGCAGTGCTTTATTCCCCTGAAACAAAAACTCTCCCTAGAACAGGAGAATTAGCTCTTAGAAGAGCTATCCCA</genome_strand>
        <mrna_strand>AGAGAGAGAGAGAGGCCAGAAAGAAAAAAAGAGGAGAGAGAGAGAACCCCACAACTCGGTGGCAATGGCTGCCCACCTATCCACGACCATTATCTCCCCAAATCTCACTCATTTGGACCAAAATAAAGCTTTCTTCCAGAGCCATCTTCCACTTCGGTCCCCAATTTATGCTACACTCAATCGCATTGCCTTGAAGAAGAATGCTTCCATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAAGAGGCTGACTGCTCCTTCCATTTTGTCAACATATTTGGAGAGTACAGTCAAGCAATTTCAGAGTTTAATGGCGGCGATCATTATATTTACTGAAATTGCATCTCCAATACCTTTGCATGGTTTGCAAGATTTGTCCATTTCCCCTGCCGAGGCAGTGCTTTATTCCCCCGAAACAAAAACGCTCCCTAGAACAGGAGAATTAGCTCTTAGAAGAGCTATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336015" ref_strand="+" ref_description="SGN-U336015        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 4e-30, score=135)">
      <seq>ttgtcgtcccctatccattcccattctagctttgaacttttgagttgtacatgaaatgttgattgaacaatcaactttgagtgcttttttctgaattgttaatccatttaataactatcaccatgagtatgttgaggagatgcaaaacacatgattaatcgctctatacattgaatatcttatttgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0124D18.1" temp_strand="-" temp_description="C12SLe0124D18.1  AC217496.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0124D18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="17018" stop="16230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16718" g_stop="16530" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="190" polyA_stop="201"/>
      <MATCH_line gen_id="C12SLe0124D18.1" gen_strand="-" ref_id="SGN-U336015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0124D18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16718" e_stop="16530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCGTCCCCTATCCATTCCCATTCTAGCTTTGAACTTTTGAGTTGTACATGAAATGTTGATTGAACAATCAACTTTGAGTGCTTTTTTCTGAATTGTTAATCCATTTAATAACTATCACCATGAGTATGTTGAGGAGATGCAAAACACATGATTAATCGCTCTATACATTGAATATCTTATTTGTGA</genome_strand>
        <mrna_strand>TTGTCGTCCCCTATCCATTCCCATTCTAGCTTTGAACTTTTGAGTTGTACATGAAATGTTGATTGAACAATCAACTTTGAGTGCTTTTTTCTGAATTGTTAATCCATTTAATAACTATCACCATGAGTATGTTGAGGAGATGCAAAACACATGATTAATCGCTCTATACATTGAATATCTTATTTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317253" ref_strand="+" ref_description="SGN-U317253        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, . | chr2:8971481-8972511 FORWARD | Aliases: F5H14.21, F5H14_21(evalue: 2e-18, score=89) genbank/nr: gi|68299225|emb|CAJ13713.1| hypothetical protein [Capsicum chinense] (evalue: 1e-22, score=109)">
      <seq>gtcactctcattcagaagatctccgatcgtcagattacaaagatggctgcgtggacagcggtggcgcgtcaagcttcatccctctctcgactctcggctaccaaatcagtgaacacaaccagccaaggcgcactcctcatccagcggcgcggtctatccggtggcggtgaccatcatggtcctccaaaggtgaacatttggcaggatccaatgagcccatcaaaatggaaagaagagcattttgtgatagcctctcttactggttggggtttggtcttctatgggggttataagctcttctcaggaggaaagaaagagaagaaggaagagaaatgatcacacggacgtcgggttgtctctattcaccggcaataaagtagtgtaagttgctaggtcttagtggcctagttcaagccaacatgaggatgtaatttgtcgtcccctatccattcccattctagctttgaacttttgagttgtacatgaaatgttgattgaacaatcaactttgagtgcttttttctgaattgttaatccatttaataactatcaccatgagtatgttgaggagatgcaaaacacatgattaatcgctctatacattgaatatcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnccccgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0124D18.1" temp_strand="-" temp_description="C12SLe0124D18.1  AC217496.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0124D18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="21914" stop="16237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21614" g_stop="21446" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21445" i_stop="19208" i_length="2238">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19207" g_stop="19137" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="240" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19136" i_stop="17602" i_length="1535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17601" g_stop="17512" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="330" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17511" i_stop="16821" i_length="691">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16820" g_stop="16538" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="613" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="631" polyA_stop="665"/>
      <MATCH_line gen_id="C12SLe0124D18.1" gen_strand="-" ref_id="SGN-U317253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0124D18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21614" e_stop="21446"/>
          <exon e_start="19207" e_stop="19137"/>
          <exon e_start="17601" e_stop="17512"/>
          <exon e_start="16820" e_stop="16538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTCTCATTCAGAAGATCTCCGATCGTCAGATTACAAAGATGGCTGCGTGGACAGCGGTGGCGCGTCAAGCTTCATCCCTCTCTCGACTCTCGGCTACCAAATCAGTGAACACAACCAGCCAAGGCGCACTCCTCATCCAGCGGCGCGGTCTATCCGGTGGCGGTGGTAATTTTCCCCTTTTCATATAATTTTTTAAATTTTTTTGCAGTGAATTGAAGAGCATGAAAACTGGAAATTGCTAAATGCGAGATTAATTGTTTGATTTACGCATTTCCTTTAGATTTCTGAAACTTGTTGAATATAGGACTTATATATATATATATATGATCTCAAGTTACAAATATGTTATAATTACTTGCTAATTAGTACTATTTTGATTTATTAAACCATAGACGCACTAGGTTTGGCTTTGGTTCGCATTGCTTGCTAAATTACTAAATGAGAATTCGTATTCCTTCCATCCCATTTTAAGTGTCTTAAAGCCCAAAAGATATGTATGCTCCCTTGTTTCATTTTGTTTAAGAAAAGAATATGTTTTTCATTTTTTGACTATTCTTTAATTTCAACTTTTGATCAAACATGTTTAAGATGGACATACATTCTACGTATCTTTTAGTTTTAAACCACAGGATTTAAAAGTTTTCTTTACTTTCTTAAACTCTGTTTCAAGTTAAAACCGTAAACAAATTGAAAGAGAGGGAGTGTTTCAAAATATATGTTTTAGACAACCAAGATGAAGTTTCTTTTCAATTTTTCCCTTACTATTGAAGATGCACAAGTATTTGATAATCGTTACATCCCATTTTAAGTGTCGTTTAATGTTTTAGCATGCCCATTAAAAAAATACTAAGTAGAGTGTAATGGTTACTAAATTACTAATACTTGTATATTATTTTCTCTCACCTTATTACTCCCGGTAATACTAACTCAATTAATTAACTCTTAAACCATATTAGTCTTTCCCCTATTATTATTCAACCAATTAAGGTGCTTTATTTATTTATTAATTCTAAGTTTCTAAATAACCTTAATGACTCCCAAATTATTGTGTCTTATCCATCTTCATTATCATTGGCAAATTTTCTGAAGTTGAAATTCATTCCGTTGAAACTTTCATAACTTTTTTTTGAACTTGGTAACTTTGTATTATATCATGAAACTGTACATGAGTTGTATTGAAACCGTATATTATACAAGGGTACTCCCAATTTCATTGTTCTTTGTCTAAATTGCGTCTAAAACATCAATTATTGAGGCAATGGCTAAATTGAGTCTAAAACATCAATTATAGAGGCAATGTCATTAGATTATAATTGGTTACATCAAAAATATAAAAGCAAGATGCAGTTGAGTTTAACCCTCTGCACATTATTGTCTATGCTCTCAAAGCACCTAGAATTCCACTCTTGCCATATTGCCCACCATATTGCATCAGGGATAATTTTCCATCTACCTCTGTCCTTAGCATGTACACCTGCTTCCTCTGAGGTCTTTGAAACCTCTGAAACCTTCCTAGGCATGGTCTGGGACATATTCTCCATAACTGTTGAGTGTACTTGCAATGTAGAAATAGATGGTTAACAATCTCTAAGTTACTCCACAGAGAAAACATCTAGAGCACAAGGTTATTCCCCTTCTAATGACATTGTCCTGAGAAAGCAGGATACTTTGTGGCTTAGAACTGCTTAGCTCAGTGCTCCCTTCCATGTAGGATGACTTATTTCATTGGCCATTGAAGAGACTGAAGGACTGACAGCTTCACATAAATGATTTGAAGTGCAATGTTTTCTGCTATTCAAATTAATATTCAGATTCATATGTTATATTTTACAGGAGTTTTTCTAGTTGGTTAGAGGTTGTATGACAATGTACAATAGGCTTGAGATTTAGCGAATCTCTCACCAAACTAGAAGAACTCTTGTTTTAGCAAACCCCTTGCTTCTTTAGAGGATAAATACCGAGTAGTGCCACAAGAGGGGTCTAAATGGACTTAGAGTGTTCATATAGCTGTGTCATCTATATTGGTGTTGAAGATTAGTAGTTGTTATAACTTATATTACATTTTACTGTCTTAGTTGGCCTATATATATCTTCTAGCTTTATTGCTTCCATTGTATATTAGAGTTTGAATTTAGCCTTTTAACCCATATAGTCATTTAAATTTACTTAGTTCAGATGGAATGCAAAGAATTTAAATGAACTTTATCTTCGAGAATTTAACAGTGAGAAAATTGGTACGTGACATAAAACTGAAGGAAACGGTGAGTAGTAATCTGTTGTCAAGCTCCTGCCTTTGTTTGTCGTGTGTTAACAATGCAAGCCCTAATGGCATTTGAGATATGGTTTTGGAATGCAAATGTACCATTCAGTGTATTCATGGCTAAGCTATTCGTTGTGATGCAGACCATCATGGTCCTCCAAAGGTGAACATTTGGCAGGATCCAATGAGCCCATCAAAATGGAAAGAAGAGCATGTGAGTTTTTCTGAATATTTACAGTTCTCTTTTCTATTTGTTTAAGCTGTCTTGGGTTCGTTTGGTGGTTTTCTATGATGTTATCATCTTGCCTGTCCTGAAACTGTTGAATTTCTTGTTCGTCACTGTTTAAGACTTGTTTGCTTATTACTTTCATCTGCTTGTGTTGTTTAGAGTCTTTGACTGCTGGATATGTTATGTTTATGGACGGGAACTCTTCTATCTTGGTGGCTTCAGGCCATAATTCTGGTGATAACTTATGACGTTGCTTGTGCCTTGTGAAGTGGAAGTTACATGCCATTTTTACGATAAATTGTACATCTGTGCAATAATTCTGCCTTCTATTTCTGTGAACTAAGGCGGAATCCTTACACATGAGCATGCAACCTGTGTTCCTCATTTCCTGCCACCTTTGTAGTCCCCCAGTACTCTTAAGTAGTCAGGCTTCATAAGCCCCAGTCCTCTTACCCATCACGACACCTAACTTCTCAAGATTGGCAACGGTGGTAGTTTTTGGAATAGGTTTTGCAGCAGCGGTGAAAGATGCTTTAGGAGAAATGGGGATAACAGTATTGTACCCAAGAAGAAATAAGAACCCTTTGGGGAATGATTACTAGCCACTTCGAACTTATTGTTCCAAGAACTCCCAAAAAATTTGCCAGGCTCTTCCCAAATGCTCAGAATCCTTCAGTCCAGGAGCTTTGAACTTTTGGGCGGGTAAGAGCCGCCTCTTAATTTAGTTGGAATAGATAAAAGCTGTTGTATTTTAATCTGATGGGAAAAATTGGCAGCTTCTAACCTTCTACATGTGCTAGGGTGGGGAGGCTTGTTGATAATGAGGGACAGAAACAGATTGAGGGAGTGAGAAGTTAAGTGATGACCATTGAGGTGGGGGTGATGTTGGGGCTGTCTGATGCCAGATTCTCTGTAGCGAGTTGTAGGTGAAGAGAAAAGAGGCGATGCCAGAAATGTTAGTTGAAGGTTGAACTTACCCATGAAATTTGTCGTGTGTTTTCATGTAATGTTGCAGAGTGCTGGGCACTATAAAAACAAGAATGTCATATATAAAGATTTATGGTTCAATATTCTACTTGCTATTGTTTGATCAACTCTCCATCATCTTTTCTGTAATTACCATATCCATTATATTTGTTCTATCAGTATGCTCGTGTAGTTGTATGCTGCTGATGTTCACATATGGTGGTATTTTCTTTACTGTTACAGAACAAAGAAGAGTCGTTTAGAGTTAGCAGTAACATACAGGTTAATTGATCAAGTGTTAACCTTTTGTTGTAGCGATCTAGTTGAAGGTGTCCTAAATGTTAAGCCATTTGCTACTCTGCTATTACCAAATTGTCAACATCATGGGTTCTCGGTCACATTTTTGTACACATTGTCATAGTGATTGCATCTCTCTTTACTTTCTTCCAGTGTTACTGGGGTCAGAATTTACCGAGTTTATGCTAATACAAACACCTAAACTAGGTGTACATCATAAACTTGTAAGTTTGACTAGGAACTTACTTCTTTTGCAGTTTGTGATAGCCTCTCTTACTGGTTGGGGTTTGGTCTTCTATGGGGGTTATAAGCTCTTCTCAGGAGGAAAGAAAGAGAAGAAGGAAGAGGTACACTTCCTGTTATTAAATAAGTGTTTTGGAATATTTTGTAGCTATTAATATTTATGTAATACTTTGTTTGAAGCAAATAGGAAATTTAGTTTCTATCTTCTTATAGCGAGTCCAGTTAAATGGCTGTAGAATATGATAGGAATTTCAAATCTATTTTAAACTATTTTGCTAGCATCTAGCTGACTGAAATTTGGTCTAGTATTCACCACATAGTGTTTGTTTGGTACGAAGGAAAAGTATTTTCTTGGTAAATAAGTGGTCTTCTCACTTATTTTATCATGTTTGGTAAATAAGTAAAAAATATATTCCTGAGAGAATTTCTATATAATCTAAGCAAACACTAGAATGGAGTGTTTGGGCAGGGTGGTGGGGTGGAAGTATTGGTGGGTAGTGTGTATGTTGACTCCCAAAACAATTACATTAACCTTCATTTAACCATACAGGACATCCTTTGTTCCATTTTAGGATTTGAAACAGTGACAATAGGATTGAAATTGTCAAGTGACGGTGGGGGTTGGGAGAAGACAATCCGTGGAATACCATTTATCGAACTTGTTTTCCCTACTCTAATTGGGGAAGTCATTTAACCTTTAAAAGGGAGAACTTAAAGCTAATGTTCTCTAGTTACTTGAAATTTGGTCTCTCTCTCTATATATACATCCTCTGATTTACTTAAATCTCTTTGCAGAAATGATCACACGGACGTCGGGTTGTCTCTATTCACCGGCAATAAAGTAGTGTAAGTTGCTAGGTCTTAGTGGCCTAGTTCAAGCCAACATGAGGATGTAATTTGTCGTCCCCTATCCATTCCCATTCTAGCTTTGAACTTTTGAGTTGTACATGAAATGTTGATTGAACAATCAACTTTGAGTGCTTTTTTCTGAATTGTTAATCCATTTAATAACTATCACCATGAGTATGTTGAGGAGATGCAAAACACATGATTAATCGCTCTATACATTGAATATCTT</genome_strand>
        <mrna_strand>GTCACTCTCATTCAGAAGATCTCCGATCGTCAGATTACAAAGATGGCTGCGTGGACAGCGGTGGCGCGTCAAGCTTCATCCCTCTCTCGACTCTCGGCTACCAAATCAGTGAACACAACCAGCCAAGGCGCACTCCTCATCCAGCGGCGCGGTCTATCCGGTGGCGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATCATGGTCCTCCAAAGGTGAACATTTGGCAGGATCCAATGAGCCCATCAAAATGGAAAGAAGAGCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATAGCCTCTCTTACTGGTTGGGGTTTGGTCTTCTATGGGGGTTATAAGCTCTTCTCAGGAGGAAAGAAAGAGAAGAAGGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATCACACGGACGTCGGGTTGTCTCTATTCACCGGCAATAAAGTAGTGTAAGTTGCTAGGTCTTAGTGGCCTAGTTCAAGCCAACATGAGGATGTAATTTGTCGTCCCCTATCCATTCCCATTCTAGCTTTGAACTTTTGAGTTGTACATGAAATGTTGATTGAACAATCAACTTTGAGTGCTTTTTTCTGAATTGTTAATCCATTTAATAACTATCACCATGAGTATGTTGAGGAGATGCAAAACACATGATTAATCGCTCTATACATTGAATATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345685" ref_strand="+" ref_description="SGN-U345685        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gggcattatacaacaattccgagatgtcgccgggaaacttttcaaccggagaggtcaacagaaaccgtcagatgcatatgcttcagaaggtgagtacagtggtggcgtttcatcgccggtgaccaaaaccagcagcccggtcaagtatgacggaactcaatccgatgagtacgttttttacccggatggacgggagaagattagcgacattctgtgcaagctccgtaaattcgctattgtctctgccgttgacgaatctctcaaaactgtagccggtgggagtaaaagcattaaggaaggatcgaaggataaatcgccttcacgtcctagacttgacaaacaagattttactgttatgatggaggagatgcaagcaaagatggagaaacttcaggatgacatgaacaacatgaagcagcaaaatgaggtgtcagctaagtgtaccaacgggttagattccttcgagttctcagacgagcctatcaagagttcaatgcctacaaaatctaaaccaaaaaaggttttaattcgttctcgaatgtagaaaacagtaaaatcatggcaatgaggaagctgcactttcatctttcttgacaatataggttgtgcttctgtaattttcttgtggtttgtgttataactgtataatacatgtatttatatgatcatatagaagtattaaactggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0124D18.1" temp_strand="-" temp_description="C12SLe0124D18.1  AC217496.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0124D18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25862" stop="22317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25562" g_stop="25288" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25287" i_stop="23037" i_length="2251">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23036" g_stop="22613" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="699" r_length="424" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0124D18.1" gen_strand="-" ref_id="SGN-U345685" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0124D18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25562" e_stop="25288"/>
          <exon e_start="23036" e_stop="22613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCATTATACAACAATTCCGAGATGTCGCCGGGAAACTTTTCAACCGGAGAGGTCAACAGAAACCGTCAGATGCATATGCTTCAGAAGGTGAGTACAGTGGTGGCGTTTCATCGCCGGTGACCAAAACCAGCAGCCCGGTCAAGTATGACGGAACTCAATCCGATGAGTACGTTTTTTACCCGGATGGACGGGAGAAGATTAGCGACATTCTGTGCAAGCTCCGTAAATTCGCTATTGTCTCTGCCGTTGACGAATCTCTCAAAACTGTAGCCGGTTAGAATCCATTTCTCTCTCTGCTCATATTTTTTAGCAATTCGGCATTTATATTGTTCAATTTTGGTGCTGATTCCATTGCTATTAGCTATTTGATAGAAGAAATGATAAGGTTGAGCTGTATTTTATGTAAATAGGTTTTCAATTGGTTGAATTGATTTCGTCTCCTAAGCTGCTTTGTGTGTTGGGGGAAAGTTATACAGTTTTCTCATGCAATATATTGTTGAGAGTGTGCGCTATTCTCCTGTGTAAATGTGAGATCCAGGCCATTTTGTGACTGGCAACTATAAACAGCTGCTTGGAAACTTGTTAATATTTCCTGTGTTAATGAAGTGGTTGAAAACTATGAGATTTCGCGATTAAACCCCAGTAGAGACAAATAAACATTAGGTGGTTTCTTTTTATATTGCCTACCCTTAGTGGACATATATTGTTGGGGAGGTGCATGCAAGCTGACTTGGACACCGTGGTTATTAAAAAGAAAAGGAACTTGTTAAGATTATGCAACTTTCTGCACTAATTTTCAGATCAAAACTAATAAATATACTCCAAATCTGTACTATAAGTCTTAAGTTAATAACAGAGCCTAGCTTATTTAAGTTTTCTGGTTTACTTCCTTGTGTTTGTATTTGCACCTTACTTATCTAAGTTTCTGGTCTACTTCCTCATGTTTGTCTTTGCACCTAGCTTATTTAAGTTTTGTGGTTTACTTCTTCGTGTTTGTAATTGCTAGTAGCTTATTTAAGTTTTTTTTTACGACCCTCATGTTTGTCTTTTGCGCTTAGCTTATTTAAGTTTTCTGGTTTACATCCTCGTGTTTGTATTAGCTTATTTAAATTTCCTGGTTTACTTATTTGTGTTTGTATTTGCGCATAGCTTATTTAAGTTTTCTAGTTTACATCTTTGTGTTTGTATTTTGTGCGTAGCCTATTTAAGTTTTCTGGTTTACATCCTTGTTTTTATATTTTGTGCTTATGTTATCTAAGCTTTCTGGTTTACTTGCTCGTGTTTGTATTTGTGCGTGGCTTGTTTATGTTTTCTGGCTTACATCTCCGTGTTTGTATTTGTGCCTAGCTTATTTAAGCTTGCATTACTTTCTCCTGTATGTATTTTCTCCTAGCTTTAAGCTTTCTGGTGTACTTCTTCTTCTTTGTATTTTCACTTAGCTTATTTAAGTTTGTGGCTTACATCCTCGTGTTACGAATTTGTGCCTAGCTTATTTTAAGACTTCCTGTTTCCTATGCCATGTTGTATTTACTGTCAATGACATTCCTCCAAATATGATGGTCCACTTTTCTATGTTTCCTTGGAATAATTTCTTTCAATTAATTTCTTCTTTCTTCTCTTTAATTTTTGTTCAGCATTAAAGTCGGATAGTCAACACTGACAACCTGCCAGAAGCTAGGATGCTTAGAATAATATTGAATCCAGTGAATGCATGAATATTATCATTTTATCTCAATGTCATTTGCTGTAATTGGTTCTTCCATATTTATCGTCCTTGGTCAACACAGGAAGAAATTCTTGTTCCTAGAGTATGTCTGGAAGGCCTTAACATAATAGAAAACACAACTCAAGCATGGGATATTTTTTACTCAGTTCTTTAAAATAATATTGTAAGTTGGTCTTATTCTGATGTCTGGGGTCGGGGGTAGGTCAAGGAATATGATTAGGAGAATGAATAAAATGATAATTTAGGCTGTTTAGTCCCATCTTTGGTATCTGTATGGGGAAGGGCACTTGGTGCATATAATATATTGCTCCAAATAAAAAGGTCGTGGATTGGTTATCCTGGCTACTCTTGAGAAACATCTTAATCTATACCCCATCCAGCAGAGTCTCCCTTCCCTTTGATCACACTTTGTTTAAACTTATGTAATCTAATGTTATGACTGAATTAGGTATGATAGTCACAAGATTGGAATGCTTATTACTGTTGAGCCGTTAAGCTCATGCACCATTCATGGGATACTTGTTTTCCCAACCTCCTCCAGGATTCCTGGTCATCAGCATTTCCATCCTTGATGTTATTATAGTCCCACCCAATCCTGTCTTACAACCAAAATGGTGCCACCCCTCAATTGATTTGTTGAGGTCCTTTCAGTTTTTCGTGATTTTGGATAATGCAAAGCAGCTATATGTTGACCTATTCGTCCTTGGAACTAGCTCTACTTGATACTTTTCTAGACTCGAGATGATAATCTTAGCCTTTTGGTTTGATATACTAATTGGATTTCAATTGTTTCTGCAGGTGGGAGTAAAAGCATTAAGGAAGGATCGAAGGATAAATCGCCTTCACGTCCTAGACTTGACAAACAAGATTTTACTGTTATGATGGAGGAGATGCAAGCAAAGATGGAGAAACTTCAGGATGACATGAACAACATGAAGCAGCAAAATGAGGTGTCAGCTAAGTGTACCAACGGGTTAGATTCCTTCGAGTTCTCAGACGAGCCTATCAAGAGTTCAATGCCTACAAAATCTAAACCAAAAAAGGTTTTAATTCGTTCTCGAATGTAGAAAACAGTAAAATCATGGCAATGAGGAAGCTGCACTTTCATCTTTCTTGACAATATAGGTTGTGCTTCTGTAATTTTCTTGTGGTTTGTGTTATAACTGTATAATACATGTATTTATATGATCATATAGAAGTATTAAACTGGTATTAAGATGTG</genome_strand>
        <mrna_strand>GGGCATTATACAACAATTCCGAGATGTCGCCGGGAAACTTTTCAACCGGAGAGGTCAACAGAAACCGTCAGATGCATATGCTTCAGAAGGTGAGTACAGTGGTGGCGTTTCATCGCCGGTGACCAAAACCAGCAGCCCGGTCAAGTATGACGGAACTCAATCCGATGAGTACGTTTTTTACCCGGATGGACGGGAGAAGATTAGCGACATTCTGTGCAAGCTCCGTAAATTCGCTATTGTCTCTGCCGTTGACGAATCTCTCAAAACTGTAGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGTAAAAGCATTAAGGAAGGATCGAAGGATAAATCGCCTTCACGTCCTAGACTTGACAAACAAGATTTTACTGTTATGATGGAGGAGATGCAAGCAAAGATGGAGAAACTTCAGGATGACATGAACAACATGAAGCAGCAAAATGAGGTGTCAGCTAAGTGTACCAACGGGTTAGATTCCTTCGAGTTCTCAGACGAGCCTATCAAGAGTTCAATGCCTACAAAATCTAAACCAAAAAAGGTTTTAATTCGTTCTCGAATGTAGAAAACAGTAAAATCATGGCAATGAGGAAGCTGCACTTTCATCTTTCTTGACAATATAGGTTGTGCTTCTGTAATTTTCTTGTGGTTTGTGTTATAACTGTATAATACATGTATTTATATGATCATATAGAAGTATTAAACTGGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320019" ref_strand="+" ref_description="SGN-U320019        Tomato 200607 #1 [12 ESTs aligned]">
      <seq>aaaaaaagcataagttggttgcacttccaggtctagcatttttcgagttctcctagttcccgatttaagcaaaagggcaaaaatgggaatttgggacttcataagctccggcgcagaatcggtgaaacggaacacaccggatctagcaactccggtgacgaaggtatgcaaaggtacctattattacagtgcgaccgccgttaaaatgatcgacaacgtcgttcgagttagcggcgtgcagaagctgggtcagtacagttacatgcctgatgaagaaggcagggctaaaatcgtcagtttcagtacaaaattcgccaaaaatgcttctgtttatgcaatcaaagaatcagccaagatcttccttcctggtggaaaagcagtctcccaaatttactctcaaacagttcgggaaatggaagtcgagtctaaaaataatcagaacgcatcatgcaacaaggaaataactagcaattcgagtaaggttgccactagtactggtcctctgggattgctcaatggggcagagatgctggaaaacagagaactgcagttaagttctgaaaataaagctcaggttgattcatttgctcatcaaacacctgaagatgttctacgagttttcatgatgaaggaatttgttggctctcgttatctggacaatttgctggttcttgatcatccacacaacagaagaaagcgtaattgattctagtatgtatctttgacattctcgtatatatatatgtttgtgttactggcttgttcttagtgtatgtttgtttgtatgtatatctaacttctaagttacctctttgctttggaaatcgcttactgggaagcaagttttgtatagttatcttcgataacaatttgaactgcagtatcacgagtttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0124D18.1" temp_strand="-" temp_description="C12SLe0124D18.1  AC217496.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0124D18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35983" stop="33914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35683" g_stop="35312" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35311" i_stop="34744" i_length="568">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34743" g_stop="34217" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="895" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="896" polyA_stop="911"/>
      <MATCH_line gen_id="C12SLe0124D18.1" gen_strand="-" ref_id="SGN-U320019" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0124D18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35683" e_stop="35312"/>
          <exon e_start="34743" e_stop="34217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAGCATAAGTTTGGTTGCACTTCCCAGTGTACTAGCATTTTTCGAGTTCTCCTAGTTCCCGATTTAAGCAAAAGGGCAAAAATGGGAATTTGGGACTTCATAAGCTCCGGCGCAGAATCGGTGAAACGGAACACACCGGATCTAGCAACTCCGGTGACGAAGGTATGCAAAGGTACCTATTATTACAGTGCGACCGCCGTTAAAATGATCGACAACGTCGTTCGAGTTAGCGGCGTGCAGAAGCTGGGTCAGTACAGTTACATGCCTGATGAAGAAGGCAGGGCTAAAATCGTCAGTTTCAGTACAAAATTCGCCAAAAATGCTTCTGTTTATGCAATCAAAGAATCAGCCAAGATCTTCCTTCCTGGTTTGCTCCCTTCTCATTTTACGAAATCAGACTTTGTGATAAATTTTTCAAAAAAAAGGAAAATTTGATGAACAAACAATGTTTTCAACTTTTAATTTTGGGCGAAACTTGACTTCCGCTCTCAAAAATTCATTTTTTTTCCCAAGTAAAATACATATGTAGGAATCGTTTGATAAGTATAAAAATGACTTAAAACGATTTGATATTTTTTATTTTTGACTTTGTTTAAGCCAATTCAAACGGGATCTTAATAAAGTAGTTGATTGTTCTGAGTTTCCGGGTTCAAATCTTGGTAGATAAAAACACTAGGTGATCCTATTGGTTCTAGCTTTGGTGGACAAAGTTAGATGATACTGATTGCTGGTGGGAGATATCCTGTGGTATTAGTCGAGATACGTGTAATCAAACACCAAAGTCATAAAAAACAAAAAAGTAGCTATCAAAACCTTAAGTGACAATAGGGAAATGAGTAAACGTGTAGTCACCTATTGGAATTCTTACCAATAAATAATAACTAAGTGAAATTCTGGAGAACTTTAACCTAAAAAAGTAGTGTTCATGTGTGCAGGTGGAAAAGCAGTCTCCCAAATTTACTCTCAAACAGTTCGGGAAATGGAAGTCGAGTCTAAAAATAATCAGAACGCATCATGCAACAAGGAAATAACTAGCAATTCGAGTAAGGTTGCCACTAGTACTGGTCCTCTGGGATTGCTCAATGGGGCAGAGATGCTGGAAAACAGAGAACTGCAGTTAAGTTCTGAAAATAAAGCTCAGGTTGATTCATTTGCTCATCAAACACCTGAAGATGTTCTACGAGTTTTCATGATGAAGGAATTTGTTGGCTCTCGTTATCTGGACAATTTGCTGGTTCTTGATCATCCACACAACAGAAGAAAGCGTAATTGATTCTAGTATGTATCTTTGACATTCTCGTATATATATATGTTTGTGTTACTGGCTTGTTCTTAGTGTATGTTTGTTTGTATGTATATCTAACTTCTAAGTTACCTCTTTGCTTTGGAAATCGCTTACTGGGAAGCAAGTTTTGTATAGTTATCTTCGATAACAATTTGAACTGCAGTATCACGAGTTTGA</genome_strand>
        <mrna_strand>AAAAAAAGCATAAG-TTGGTTGCACTT-CCAG-GT-CTAGCATTTTTCGAGTTCTCCTAGTTCCCGATTTAAGCAAAAGGGCAAAAATGGGAATTTGGGACTTCATAAGCTCCGGCGCAGAATCGGTGAAACGGAACACACCGGATCTAGCAACTCCGGTGACGAAGGTATGCAAAGGTACCTATTATTACAGTGCGACCGCCGTTAAAATGATCGACAACGTCGTTCGAGTTAGCGGCGTGCAGAAGCTGGGTCAGTACAGTTACATGCCTGATGAAGAAGGCAGGGCTAAAATCGTCAGTTTCAGTACAAAATTCGCCAAAAATGCTTCTGTTTATGCAATCAAAGAATCAGCCAAGATCTTCCTTCCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAAGCAGTCTCCCAAATTTACTCTCAAACAGTTCGGGAAATGGAAGTCGAGTCTAAAAATAATCAGAACGCATCATGCAACAAGGAAATAACTAGCAATTCGAGTAAGGTTGCCACTAGTACTGGTCCTCTGGGATTGCTCAATGGGGCAGAGATGCTGGAAAACAGAGAACTGCAGTTAAGTTCTGAAAATAAAGCTCAGGTTGATTCATTTGCTCATCAAACACCTGAAGATGTTCTACGAGTTTTCATGATGAAGGAATTTGTTGGCTCTCGTTATCTGGACAATTTGCTGGTTCTTGATCATCCACACAACAGAAGAAAGCGTAATTGATTCTAGTATGTATCTTTGACATTCTCGTATATATATATGTTTGTGTTACTGGCTTGTTCTTAGTGTATGTTTGTTTGTATGTATATCTAACTTCTAAGTTACCTCTTTGCTTTGGAAATCGCTTACTGGGAAGCAAGTTTTGTATAGTTATCTTCGATAACAATTTGAACTGCAGTATCACGAGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339003" ref_strand="+" ref_description="SGN-U339003        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H2B, putative, strong similarity to histone H2B Arabidopsis thaliana GI:2407802, Gossypium hirsutum SP:O22582, Lycopersicon esculentum GI:3021489, Capsicum annuum SP:O49118; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 | chr1:2412977-2413705 FORWARD | Aliases: F24B9.10, F24B9_10(evalue: 2e-43, score=172) genbank/nr: histone(evalue: 5e-42, score=174)">
      <seq>caatttcttactaatttccgaaatctcctatcaatggcaccaaaggcagagaagaagccagcagctgagaaggctcctgctgccgccgctgagaaatcaaaggccggcaagaagctacccaaggacggcggagccgctgctgccgtagacaagaagaagaagaggtcgaagaaatcaatcgagacttacaagatctacatcttcaaggtgttgaagcaggttcatccagatatcggtatttcaagcaaggctatgggaatcatgaacagcttcatcaacgatatctttgagaagcttgctcaggaatcttctaggcttgctaggtacaacaaaaagcctaccatcacttctcgggagattcaaactgctgtccgattggtccctcccggtgaattggctaagcacgccgtctctgagggtactaaggcagttaccaaattcactagctcttagagatttgtattcgattttttctgttggatttgtgatttcaattagcgttttggtgatgtaaagaacgggaaattgaaatataacatagatttgttgataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0124D18.1" temp_strand="-" temp_description="C12SLe0124D18.1  AC217496.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0124D18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="40069" stop="38918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39769" g_stop="39216" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0124D18.1" gen_strand="-" ref_id="SGN-U339003" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0124D18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39769" e_stop="39216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCTTACTAATTTCCGAAATCTCCTATCAATGGCACCAAAGGCAGAGAAGAAGCCAGCAGCTGAGAAGGCTCCTGCTGCCGCCGCTGAGAAATCAAAGGCCGGCAAGAAGCTACCCAAGGACGGCGGAGCCGCTGCTGCCGTAGACAAGAAGAAGAAGAGGTCGAAGAAATCAATCGAGACTTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTTCATCCAGATATCGGTATTTCAAGCAAGGCTATGGGAATCATGAACAGCTTCATCAACGATATCTTTGAGAAGCTTGCTCAGGAATCTTCTAGGCTTGCTAGGTACAACAAAAAGCCTACCATCACTTCTCGGGAGATTCAAACTGCTGTCCGATTGGTCCTTCCCGGTGAATTGGCTAAGCACGCCGTCTCTGAGGGTACTAAGGCAGTTACCAAATTCACTAGCTCTTAGAGATTTGTATTCGATTTTTTCTGTTGGATTTGTGATTTCAATTAGCGTTTTGGTGATGTAAAGAACGGGAAATTGAAATATAACATAGATTTGATGAAATT</genome_strand>
        <mrna_strand>CAATTTCTTACTAATTTCCGAAATCTCCTATCAATGGCACCAAAGGCAGAGAAGAAGCCAGCAGCTGAGAAGGCTCCTGCTGCCGCCGCTGAGAAATCAAAGGCCGGCAAGAAGCTACCCAAGGACGGCGGAGCCGCTGCTGCCGTAGACAAGAAGAAGAAGAGGTCGAAGAAATCAATCGAGACTTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTTCATCCAGATATCGGTATTTCAAGCAAGGCTATGGGAATCATGAACAGCTTCATCAACGATATCTTTGAGAAGCTTGCTCAGGAATCTTCTAGGCTTGCTAGGTACAACAAAAAGCCTACCATCACTTCTCGGGAGATTCAAACTGCTGTCCGATTGGTCCCTCCCGGTGAATTGGCTAAGCACGCCGTCTCTGAGGGTACTAAGGCAGTTACCAAATTCACTAGCTCTTAGAGATTTGTATTCGATTTTTTCTGTTGGATTTGTGATTTCAATTAGCGTTTTGGTGATGTAAAGAACGGGAAATTGAAATATAACATAGATTTGTTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323488" ref_strand="+" ref_description="SGN-U323488        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, ; expression supported by MPSS | chr3:4476303-4477099 FORWARD | Aliases: None(evalue: 3e-07, score=52.8) genbank/nr: expressed(evalue: 2e-10, score=69.7)">
      <seq>attcttaaggggtcagagtgatatttttctaacttcaatcgttttcttttttactctagagagaatagaatctcccgttttctagaaacccgaaatattctggattgttcgatacggtccgctactacgttctctggacgcaaaagattttccgatcggcaaccggaggcggcagagaatttcaattgccgtcgtttaggtggttcaatcatcaatggatcattcctatcaagttaatcacagttgtgccctaaatcctcccaaagacggcctccctagcacccagtcttctaatgatgcacttaggcagatgggatctgaagggaaaatgggagcagttcatgaagaaatgaagagagtgagtagacttccaccaagcagtacatatgcaactcatcggatgcgcgtccttaacaaaatcctgcaacttatgtccattcagagaaccacttcacaggatgaggagttggaattgctattttctgaagggaaaatgggagcagttcatgaagaaatgaagagagtgagtagacttccaccaagcagtacatatgcaactcatcggatgcgcgtccttaacaaaatcctgcaacttatgtccattcagagaaccacttcacaggatgaggagttggaattgctattttctgggctctctcttggatgataagaagcaaagatcatattttcagccgttggtttatcagatacgcagtggatcatttatgttgctcacttcgtctttggtcttcagctgcatcttcgcaaaccgtttctttttgatgtagagatgatgctttgattattaaataagttatactggttatataataggtctagaattaaacctgttatctcaattatgtggtggatcatctggctgtcaaagttagttgatttcaacttgaactcttggattccaggtgaatcaatgctccacagtacaatattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0124D18-9tgCU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0124D18.1" temp_strand="+" temp_description="C12SLe0124D18.1  AC217496.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0124D18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="40166" stop="42908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40466" g_stop="40664" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40665" i_stop="40907" i_length="243">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40908" g_stop="41150" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="442" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41151" i_stop="41299" i_length="149">
            <donor d_prob="0.530" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41300" g_stop="41312" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="454" r_length="12" r_score="0.692"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41313" i_stop="41475" i_length="163">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41476" g_stop="41504" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="481" r_length="27" r_score="0.517"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41505" i_stop="41575" i_length="71">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.796" a_score="0.48"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41576" g_stop="41651" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="548" r_length="67" r_score="0.526"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41652" i_stop="41763" i_length="112">
            <donor d_prob="0.312" d_score="0.58"/>
            <acceptor a_prob="0.127" a_score="0.47"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41764" g_stop="41826" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="607" r_length="59" r_score="0.524"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41827" i_stop="42259" i_length="433">
            <donor d_prob="0.000" d_score="0.58"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42260" g_stop="42608" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="956" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0124D18.1" gen_strand="+" ref_id="SGN-U323488" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>972</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0124D18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40466" e_stop="40664"/>
          <exon e_start="40908" e_stop="41150"/>
          <exon e_start="41300" e_stop="41312"/>
          <exon e_start="41476" e_stop="41504"/>
          <exon e_start="41576" e_stop="41651"/>
          <exon e_start="41764" e_stop="41826"/>
          <exon e_start="42260" e_stop="42608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTAAGGGGTCAGAGTGATATTTTTCTAACTTCAATCGTTTTCTTTTTTACTCTAGAGAGAATAGAATCTCCCGTTTTCTAGAAACCCGAAATATTCTGGATTGTTCGATACGGTCCGCTACTACGTTCTCTGGACGCAAAAGATTTTCCGATCGGCAACCGGAGGCGGCAGAGAATTTCAATTGCCGTCGTTTAGGTATTTATCTCGTATTCTGGAATTCCGTTTTGCTTTATCTTGTTAAACTTCTGATATATATACTTATGTAATTTTTAGCCGAACTGGTGCAACGCATGGAGCGTAGTTAGGTGTTATAAAGTTCAATTCCCTTTGCCTATCTAGGTATTTGTTAGGGATTTTAACTTAGAGCCTGTTTGACCTAGCATTTCTCTTGTGAGGTTCTGGTTTTATCATTGCTTAAATATGTCCTTTTATCTATAGGTGGTTCAATCATCAATGGATCATTCCTATCAAGTTAATCACAGTTGTGCCCTAAATCCTCCCAAAGACGGCCTCCCTAGCACCCAGTCTTCTAATGATGCACTTAGGCAGATGGGATCTGAAGGGAAAATGGGAGCAGTTCATGAAGAAATGAAGAGAGTGAGTAGACTTCCACCAAGCAGTACATATGCAACTCATCGGATGCGCGTCCTTAACAAAATCCTGCAACTTATGTCCATTCAGGTACATGGTGCATACATTCAATGGGCTAGGGGGAGATTATGTTCGTGTTTAGGATATATGGTCATTGTGATCTCTTTTGCTCGTGTTTTATAGTTGTGTATTTTAGTGTTCTACGAATAAGTAGCTATGGGAAAAGGAGACCTTTTTAAACATCCTACTTGAGCACACAACATATCATGCTTGAGGTCTCATTACTACAATGCTACATTATACAGGGGTAAATTCAGTGATCACAGCCTGTTTTTGTTTATGAAGGGTCTCAAGCATTTGATATATTGCTATTGACTTTGTAGCATGTGGAAGATGACTTCTATTGCTATCCTAGAGGGCTGAGTGACTCTGTATGGGGAAAATGCAAGCCATTTACTTTCTCAATGTGTTCCATGCATAAATGTCACCTTGTGTTGTAAGATTGTTGGCATTAGGCTCTTCTTATAATTTTGGGTATATTCAAGGAAATAGCGAGAGATATTCCTGTATGAATTCTGGCCTATATCAGTTGTATGACATTAACAATTACTAGCTTGATGTTTTGTGTGTTTAAAAGAATAGTATGACTAGGAATTGGCCTCATATCTAGAGATTTAGGAATCCTCTTGATCATTTGAAACAG-ATTGGCCTATTACAGATTTCCTCTTCCTATAACATGCTCTGGTAAAGTATATAGCCCCTTCTGCTCCTATTGGAGAAGAATGGTTCGGTTGAAATTCAAACCACACACAATCTGTATATCTTCTTGTGGCTGTTTTCCCCTCTCTGCCCCGTGAAAGTTTTGGCACATTGTCTGATCATTAGTCAGTCTAGTCATCTAATTTGGTGATTATACAATTCCAGGCTACTTATTTATAGAGTAATTGTTGGAGAAGCTGTGATAAAATTGTTTTGATGTTTGCTGGTCTAGCATGCTTTGTTTCACCATCATGATTAGTATAAGAGCAAGTTTGTTTTTAGGAGGGAGAAGAACTACAGCTCTACAATCACTTCGCTACTACTTGCTAGGGGATGTTGTATTGTTTATAAGTGCATCATAGATTTCTTATGACTTTGAGTTAATTGTTAAGCATTTGAATTGAGGGTTTTATGTTTTCATTGTCTCACATTATATGCAGAGAACCACTTCACAGGATGAGGAGTTGGAATTGCTATTTTCTGGGCTCTCTCTTGGATGATAAGAAGCAAAGATCATATTTTCAGCCGTTGGTTTATCAGATACGCAGTGGATCATTTATGTTGCTCACTTCGTCTTTGGTCTTCAGCTGCATCTTCGCAAACCGTTTCTTTTTGATGTAGAGATGATGCTTTGATTATTAAATAAGTTATACTGGTTATATAATAGGTCTAGAATTAAACCTGTTATCTCAATTATGTGGTGGATCATCTGGCTGTCAAAGTTAGTTGATTTCAACTTGAACTCTTGGATTCCAGGTGAATCAATGCTCCACAGTACAATATTTTGAT</genome_strand>
        <mrna_strand>ATTCTTAAGGGGTCAGAGTGATATTTTTCTAACTTCAATCGTTTTCTTTTTTACTCTAGAGAGAATAGAATCTCCCGTTTTCTAGAAACCCGAAATATTCTGGATTGTTCGATACGGTCCGCTACTACGTTCTCTGGACGCAAAAGATTTTCCGATCGGCAACCGGAGGCGGCAGAGAATTTCAATTGCCGTCGTTTAG...................................................................................................................................................................................................................................................GTGGTTCAATCATCAATGGATCATTCCTATCAAGTTAATCACAGTTGTGCCCTAAATCCTCCCAAAGACGGCCTCCCTAGCACCCAGTCTTCTAATGATGCACTTAGGCAGATGGGATCTGAAGGGAAAATGGGAGCAGTTCATGAAGAAATGAAGAGAGTGAGTAGACTTCCACCAAGCAGTACATATGCAACTCATCGGATGCGCGTCCTTAACAAAATCCTGCAACTTATGTCCATTCAG.....................................................................................................................................................AGAACC-ACTTCA...................................................................................................................................................................CAGGATGAG-GAGT-TGGAATTGCTATTT.......................................................................TCTGAAGGGA-AAATGGGAGCA-GTTC-ATGAAGAAATGA-AGAGAGT-GAGTA-GACTTC-CACC-A-AGCAGTA................................................................................................................CATATGCAACTCATCG-GATGCGCGTCCT-TAACAAAATCCTG-CAACT-TAT-GTCCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACCACTTCACAGGATGAGGAGTTGGAATTGCTATTTTCTGGGCTCTCTCTTGGATGATAAGAAGCAAAGATCATATTTTCAGCCGTTGGTTTATCAGATACGCAGTGGATCATTTATGTTGCTCACTTCGTCTTTGGTCTTCAGCTGCATCTTCGCAAACCGTTTCTTTTTGATGTAGAGATGATGCTTTGATTATTAAATAAGTTATACTGGTTATATAATAGGTCTAGAATTAAACCTGTTATCTCAATTATGTGGTGGATCATCTGGCTGTCAAAGTTAGTTGATTTCAACTTGAACTCTTGGATTCCAGGTGAATCAATGCTCCACAGTACAATATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2161" PGL_stop="481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2161" e_stop="1951"/>
            <exon e_start="714" e_stop="481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.914" e_score="0.891"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.891">
            <gDNA_exon_boundary e_start="2161" e_stop="1951" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.914">
            <gDNA_intron_boundary i_start="1950" i_stop="715" i_length="1236"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="714" e_stop="481" e_length="234"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2161" stop="1951"/>
              <exon start="714" stop="481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAGAGAGATAGGCTAGAAAGATAAAAAGAGGATAGAGATAGAACCTTACAACTCTGTTTCAATGGCTTCCCCTTTATCCTCTTCCATTTTCTCTCCAAATTTCACTCATTTGTACCAAAATAAAGCTTTCTTCCATAGCCATCTTCCACTTCGTTCCCCAATTTATGCTACACTCAATCGCATTGCCTTGAAGAAGAATGCTTCCATG : GAATTGACAAAGAGGCTGACTGCTCCTTCCATTTTGTCAACATATTTGGAGAGTACAGTCAAGCAATTTCAGAGTTTAATGGCGGTGATCATTATATTTACTGAAATTGCATCTCCAATACCTTTGTATGGTTTGCAAGATTTGTCCATTTCTCCTGCCGAGGCAGTGCTTTATTCCCCTGAAACAAAAACTCTCCCTAGAACAGGAGAATTAGCTCTTAGAAGAGCTATCCCA</gDNA_template>
            <first_frame> R  E  R  D  R  L  E  R  *  K  E  D  R  D  R  T  L  Q  L  C  F  N  G  F  P  F  I  L  F  H  F  L  S  K  F  H  S  F  V  P  K  *  S  F  L  P  *  P  S  S  T  S  F  P  N  L  C  Y  T  Q  S  H  C  L  E  E  E  C  F  H   : G  I  D  K  E  A  D  C  S  F  H  F  V  N  I  F  G  E  Y  S  Q  A  I  S  E  F  N  G  G  D  H  Y  I  Y  *  N  C  I  S  N  T  F  V  W  F  A  R  F  V  H  F  S  C  R  G  S  A  L  F  P  *  N  K  N  S  P  *  N  R  R  I  S  S  *  K  S  Y  P  </first_frame>
            <second_frame>  E  R  E  I  G  *  K  D  K  K  R  I  E  I  E  P  Y  N  S  V  S  M  A  S  P  L  S  S  S  I  F  S  P  N  F  T  H  L  Y  Q  N  K  A  F  F  H  S  H  L  P  L  R  S  P  I  Y  A  T  L  N  R  I  A  L  K  K  N  A  S  M  :  E  L  T  K  R  L  T  A  P  S  I  L  S  T  Y  L  E  S  T  V  K  Q  F  Q  S  L  M  A  V  I  I  I  F  T  E  I  A  S  P  I  P  L  Y  G  L  Q  D  L  S  I  S  P  A  E  A  V  L  Y  S  P  E  T  K  T  L  P  R  T  G  E  L  A  L  R  R  A  I  P </second_frame>
            <third_frame>   R  E  R  *  A  R  K  I  K  R  G  *  R  *  N  L  T  T  L  F  Q  W  L  P  L  Y  P  L  P  F  S  L  Q  I  S  L  I  C  T  K  I  K  L  S  S  I  A  I  F  H  F  V  P  Q  F  M  L  H  S  I  A  L  P  *  R  R  M  L  P  W :   N  *  Q  R  G  *  L  L  L  P  F  C  Q  H  I  W  R  V  Q  S  S  N  F  R  V  *  W  R  *  S  L  Y  L  L  K  L  H  L  Q  Y  L  C  M  V  C  K  I  C  P  F  L  L  P  R  Q  C  F  I  P  L  K  Q  K  L  S  L  E  Q  E  N  *  L  L  E  E  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0124D18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2142" stop="1951"/>
                    <exon start="714" stop="481"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDKKRIEIEPYNSVSMASPLSSSIFSPNFTHLYQNKAFFHSHLPLRSPIYATLNRIALKKNASMELTKRLTAPSILSTYLESTVKQFQSLMAVIIIFTEIASPIPLYGLQDLSISPAEAVLYSPETKTLPRTGELALRRAIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="21614" PGL_stop="16530"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21614" e_stop="21446"/>
            <exon e_start="19207" e_stop="19137"/>
            <exon e_start="17601" e_stop="17512"/>
            <exon e_start="16820" e_stop="16530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21614" e_stop="21446" e_length="169"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="21445" i_stop="19208" i_length="2238"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19207" e_stop="19137" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.727">
            <gDNA_intron_boundary i_start="19136" i_stop="17602" i_length="1535"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17601" e_stop="17512" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17511" i_stop="16821" i_length="691"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16820" e_stop="16530" e_length="291"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21614" stop="21446"/>
              <exon start="19207" stop="19137"/>
              <exon start="17601" stop="17512"/>
              <exon start="16820" stop="16538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16718" stop="16530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336015" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCACTCTCATTCAGAAGATCTCCGATCGTCAGATTACAAAGATGGCTGCGTGGACAGCGGTGGCGCGTCAAGCTTCATCCCTCTCTCGACTCTCGGCTACCAAATCAGTGAACACAACCAGCCAAGGCGCACTCCTCATCCAGCGGCGCGGTCTATCCGGTGGCGGTG : ACCATCATGGTCCTCCAAAGGTGAACATTTGGCAGGATCCAATGAGCCCATCAAAATGGAAAGAAGAGCAT : TTTGTGATAGCCTCTCTTACTGGTTGGGGTTTGGTCTTCTATGGGGGTTATAAGCTCTTCTCAGGAGGAAAGAAAGAGAAGAAGGAAGAG : AAATGATCACACGGACGTCGGGTTGTCTCTATTCACCGGCAATAAAGTAGTGTAAGTTGCTAGGTCTTAGTGGCCTAGTTCAAGCCAACATGAGGATGTAATTTGTCGTCCCCTATCCATTCCCATTCTAGCTTTGAACTTTTGAGTTGTACATGAAATGTTGATTGAACAATCAACTTTGAGTGCTTTTTTCTGAATTGTTAATCCATTTAATAACTATCACCATGAGTATGTTGAGGAGATGCAAAACACATGATTAATCGCTCTATACATTGAATATCTTATTTGTGA</gDNA_template>
            <first_frame> V  T  L  I  Q  K  I  S  D  R  Q  I  T  K  M  A  A  W  T  A  V  A  R  Q  A  S  S  L  S  R  L  S  A  T  K  S  V  N  T  T  S  Q  G  A  L  L  I  Q  R  R  G  L  S  G  G  G   : D  H  H  G  P  P  K  V  N  I  W  Q  D  P  M  S  P  S  K  W  K  E  E  H  :  F  V  I  A  S  L  T  G  W  G  L  V  F  Y  G  G  Y  K  L  F  S  G  G  K  K  E  K  K  E  E  :  K  *  S  H  G  R  R  V  V  S  I  H  R  Q  *  S  S  V  S  C  *  V  L  V  A  *  F  K  P  T  *  G  C  N  L  S  S  P  I  H  S  H  S  S  F  E  L  L  S  C  T  *  N  V  D  *  T  I  N  F  E  C  F  F  L  N  C  *  S  I  *  *  L  S  P  *  V  C  *  G  D  A  K  H  M  I  N  R  S  I  H  *  I  S  Y  L  * </first_frame>
            <second_frame>  S  L  S  F  R  R  S  P  I  V  R  L  Q  R  W  L  R  G  Q  R  W  R  V  K  L  H  P  S  L  D  S  R  L  P  N  Q  *  T  Q  P  A  K  A  H  S  S  S  S  G  A  V  Y  P  V  A  V  :  T  I  M  V  L  Q  R  *  T  F  G  R  I  Q  *  A  H  Q  N  G  K  K  S  I :   L  *  *  P  L  L  L  V  G  V  W  S  S  M  G  V  I  S  S  S  Q  E  E  R  K  R  R  R  K  R :   N  D  H  T  D  V  G  L  S  L  F  T  G  N  K  V  V  *  V  A  R  S  *  W  P  S  S  S  Q  H  E  D  V  I  C  R  P  L  S  I  P  I  L  A  L  N  F  *  V  V  H  E  M  L  I  E  Q  S  T  L  S  A  F  F  *  I  V  N  P  F  N  N  Y  H  H  E  Y  V  E  E  M  Q  N  T  *  L  I  A  L  Y  I  E  Y  L  I  C   </second_frame>
            <third_frame>   H  S  H  S  E  D  L  R  S  S  D  Y  K  D  G  C  V  D  S  G  G  A  S  S  F  I  P  L  S  T  L  G  Y  Q  I  S  E  H  N  Q  P  R  R  T  P  H  P  A  A  R  S  I  R  W  R  * :   P  S  W  S  S  K  G  E  H  L  A  G  S  N  E  P  I  K  M  E  R  R  A   : F  C  D  S  L  S  Y  W  L  G  F  G  L  L  W  G  L  *  A  L  L  R  R  K  E  R  E  E  G  R   : E  M  I  T  R  T  S  G  C  L  Y  S  P  A  I  K  *  C  K  L  L  G  L  S  G  L  V  Q  A  N  M  R  M  *  F  V  V  P  Y  P  F  P  F  *  L  *  T  F  E  L  Y  M  K  C  *  L  N  N  Q  L  *  V  L  F  S  E  L  L  I  H  L  I  T  I  T  M  S  M  L  R  R  C  K  T  H  D  *  S  L  Y  T  L  N  I  L  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0124D18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21614" stop="21446"/>
                    <exon start="19207" stop="19137"/>
                    <exon start="17601" stop="17512"/>
                    <exon start="16820" stop="16815"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTLIQKISDRQITKMAAWTAVARQASSLSRLSATKSVNTTSQGALLIQRRGLSGGGDHHGPPKVNIWQDPMSPSKWKEEHFVIASLTGWGLVFYGGYKLFSGGKKEKKEEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="25562" PGL_stop="22613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25562" e_stop="25288"/>
            <exon e_start="23036" e_stop="22613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25562" e_stop="25288" e_length="275"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25287" i_stop="23037" i_length="2251"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="23036" e_stop="22613" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25562" stop="25288"/>
              <exon start="23036" stop="22613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGCATTATACAACAATTCCGAGATGTCGCCGGGAAACTTTTCAACCGGAGAGGTCAACAGAAACCGTCAGATGCATATGCTTCAGAAGGTGAGTACAGTGGTGGCGTTTCATCGCCGGTGACCAAAACCAGCAGCCCGGTCAAGTATGACGGAACTCAATCCGATGAGTACGTTTTTTACCCGGATGGACGGGAGAAGATTAGCGACATTCTGTGCAAGCTCCGTAAATTCGCTATTGTCTCTGCCGTTGACGAATCTCTCAAAACTGTAGCCG : GTGGGAGTAAAAGCATTAAGGAAGGATCGAAGGATAAATCGCCTTCACGTCCTAGACTTGACAAACAAGATTTTACTGTTATGATGGAGGAGATGCAAGCAAAGATGGAGAAACTTCAGGATGACATGAACAACATGAAGCAGCAAAATGAGGTGTCAGCTAAGTGTACCAACGGGTTAGATTCCTTCGAGTTCTCAGACGAGCCTATCAAGAGTTCAATGCCTACAAAATCTAAACCAAAAAAGGTTTTAATTCGTTCTCGAATGTAGAAAACAGTAAAATCATGGCAATGAGGAAGCTGCACTTTCATCTTTCTTGACAATATAGGTTGTGCTTCTGTAATTTTCTTGTGGTTTGTGTTATAACTGTATAATACATGTATTTATATGATCATATAGAAGTATTAAACTGGTATTAAGATGTG</gDNA_template>
            <first_frame> G  H  Y  T  T  I  P  R  C  R  R  E  T  F  Q  P  E  R  S  T  E  T  V  R  C  I  C  F  R  R  *  V  Q  W  W  R  F  I  A  G  D  Q  N  Q  Q  P  G  Q  V  *  R  N  S  I  R  *  V  R  F  L  P  G  W  T  G  E  D  *  R  H  S  V  Q  A  P  *  I  R  Y  C  L  C  R  *  R  I  S  Q  N  C  S  R :   W  E  *  K  H  *  G  R  I  E  G  *  I  A  F  T  S  *  T  *  Q  T  R  F  Y  C  Y  D  G  G  D  A  S  K  D  G  E  T  S  G  *  H  E  Q  H  E  A  A  K  *  G  V  S  *  V  Y  Q  R  V  R  F  L  R  V  L  R  R  A  Y  Q  E  F  N  A  Y  K  I  *  T  K  K  G  F  N  S  F  S  N  V  E  N  S  K  I  M  A  M  R  K  L  H  F  H  L  S  *  Q  Y  R  L  C  F  C  N  F  L  V  V  C  V  I  T  V  *  Y  M  Y  L  Y  D  H  I  E  V  L  N  W  Y  *  D  V </first_frame>
            <second_frame>  G  I  I  Q  Q  F  R  D  V  A  G  K  L  F  N  R  R  G  Q  Q  K  P  S  D  A  Y  A  S  E  G  E  Y  S  G  G  V  S  S  P  V  T  K  T  S  S  P  V  K  Y  D  G  T  Q  S  D  E  Y  V  F  Y  P  D  G  R  E  K  I  S  D  I  L  C  K  L  R  K  F  A  I  V  S  A  V  D  E  S  L  K  T  V  A   : G  G  S  K  S  I  K  E  G  S  K  D  K  S  P  S  R  P  R  L  D  K  Q  D  F  T  V  M  M  E  E  M  Q  A  K  M  E  K  L  Q  D  D  M  N  N  M  K  Q  Q  N  E  V  S  A  K  C  T  N  G  L  D  S  F  E  F  S  D  E  P  I  K  S  S  M  P  T  K  S  K  P  K  K  V  L  I  R  S  R  M  *  K  T  V  K  S  W  Q  *  G  S  C  T  F  I  F  L  D  N  I  G  C  A  S  V  I  F  L  W  F  V  L  *  L  Y  N  T  C  I  Y  M  I  I  *  K  Y  *  T  G  I  K  M   </second_frame>
            <third_frame>   A  L  Y  N  N  S  E  M  S  P  G  N  F  S  T  G  E  V  N  R  N  R  Q  M  H  M  L  Q  K  V  S  T  V  V  A  F  H  R  R  *  P  K  P  A  A  R  S  S  M  T  E  L  N  P  M  S  T  F  F  T  R  M  D  G  R  R  L  A  T  F  C  A  S  S  V  N  S  L  L  S  L  P  L  T  N  L  S  K  L  *  P  :  V  G  V  K  A  L  R  K  D  R  R  I  N  R  L  H  V  L  D  L  T  N  K  I  L  L  L  *  W  R  R  C  K  Q  R  W  R  N  F  R  M  T  *  T  T  *  S  S  K  M  R  C  Q  L  S  V  P  T  G  *  I  P  S  S  S  Q  T  S  L  S  R  V  Q  C  L  Q  N  L  N  Q  K  R  F  *  F  V  L  E  C  R  K  Q  *  N  H  G  N  E  E  A  A  L  S  S  F  L  T  I  *  V  V  L  L  *  F  S  C  G  L  C  Y  N  C  I  I  H  V  F  I  *  S  Y  R  S  I  K  L  V  L  R  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0124D18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25561" stop="25288"/>
                    <exon start="23036" stop="22768"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIIQQFRDVAGKLFNRRGQQKPSDAYASEGEYSGGVSSPVTKTSSPVKYDGTQSDEYVFYPDGREKISDILCKLRKFAIVSAVDESLKTVAGGSKSIKEGSKDKSPSRPRLDKQDFTVMMEEMQAKMEKLQDDMNNMKQQNEVSAKCTNGLDSFEFSDEPIKSSMPTKSKPKKVLIRSRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="35683" PGL_stop="34217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35683" e_stop="35312"/>
            <exon e_start="34743" e_stop="34217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.961" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="35683" e_stop="35312" e_length="372"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.961">
            <gDNA_intron_boundary i_start="35311" i_stop="34744" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34743" e_stop="34217" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35683" stop="35312"/>
              <exon start="34743" stop="34217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAAGCATAAGTTTGGTTGCACTTCCCAGTGTACTAGCATTTTTCGAGTTCTCCTAGTTCCCGATTTAAGCAAAAGGGCAAAAATGGGAATTTGGGACTTCATAAGCTCCGGCGCAGAATCGGTGAAACGGAACACACCGGATCTAGCAACTCCGGTGACGAAGGTATGCAAAGGTACCTATTATTACAGTGCGACCGCCGTTAAAATGATCGACAACGTCGTTCGAGTTAGCGGCGTGCAGAAGCTGGGTCAGTACAGTTACATGCCTGATGAAGAAGGCAGGGCTAAAATCGTCAGTTTCAGTACAAAATTCGCCAAAAATGCTTCTGTTTATGCAATCAAAGAATCAGCCAAGATCTTCCTTCCTG : GTGGAAAAGCAGTCTCCCAAATTTACTCTCAAACAGTTCGGGAAATGGAAGTCGAGTCTAAAAATAATCAGAACGCATCATGCAACAAGGAAATAACTAGCAATTCGAGTAAGGTTGCCACTAGTACTGGTCCTCTGGGATTGCTCAATGGGGCAGAGATGCTGGAAAACAGAGAACTGCAGTTAAGTTCTGAAAATAAAGCTCAGGTTGATTCATTTGCTCATCAAACACCTGAAGATGTTCTACGAGTTTTCATGATGAAGGAATTTGTTGGCTCTCGTTATCTGGACAATTTGCTGGTTCTTGATCATCCACACAACAGAAGAAAGCGTAATTGATTCTAGTATGTATCTTTGACATTCTCGTATATATATATGTTTGTGTTACTGGCTTGTTCTTAGTGTATGTTTGTTTGTATGTATATCTAACTTCTAAGTTACCTCTTTGCTTTGGAAATCGCTTACTGGGAAGCAAGTTTTGTATAGTTATCTTCGATAACAATTTGAACTGCAGTATCACGAGTTTGA</gDNA_template>
            <first_frame> K  K  S  I  S  L  V  A  L  P  S  V  L  A  F  F  E  F  S  *  F  P  I  *  A  K  G  Q  K  W  E  F  G  T  S  *  A  P  A  Q  N  R  *  N  G  T  H  R  I  *  Q  L  R  *  R  R  Y  A  K  V  P  I  I  T  V  R  P  P  L  K  *  S  T  T  S  F  E  L  A  A  C  R  S  W  V  S  T  V  T  C  L  M  K  K  A  G  L  K  S  S  V  S  V  Q  N  S  P  K  M  L  L  F  M  Q  S  K  N  Q  P  R  S  S  F  L  :  V  E  K  Q  S  P  K  F  T  L  K  Q  F  G  K  W  K  S  S  L  K  I  I  R  T  H  H  A  T  R  K  *  L  A  I  R  V  R  L  P  L  V  L  V  L  W  D  C  S  M  G  Q  R  C  W  K  T  E  N  C  S  *  V  L  K  I  K  L  R  L  I  H  L  L  I  K  H  L  K  M  F  Y  E  F  S  *  *  R  N  L  L  A  L  V  I  W  T  I  C  W  F  L  I  I  H  T  T  E  E  S  V  I  D  S  S  M  Y  L  *  H  S  R  I  Y  I  C  L  C  Y  W  L  V  L  S  V  C  L  F  V  C  I  S  N  F  *  V  T  S  L  L  W  K  S  L  T  G  K  Q  V  L  Y  S  Y  L  R  *  Q  F  E  L  Q  Y  H  E  F   </first_frame>
            <second_frame>  K  K  A  *  V  W  L  H  F  P  V  Y  *  H  F  S  S  S  P  S  S  R  F  K  Q  K  G  K  N  G  N  L  G  L  H  K  L  R  R  R  I  G  E  T  E  H  T  G  S  S  N  S  G  D  E  G  M  Q  R  Y  L  L  L  Q  C  D  R  R  *  N  D  R  Q  R  R  S  S  *  R  R  A  E  A  G  S  V  Q  L  H  A  *  *  R  R  Q  G  *  N  R  Q  F  Q  Y  K  I  R  Q  K  C  F  C  L  C  N  Q  R  I  S  Q  D  L  P  S  W :   W  K  S  S  L  P  N  L  L  S  N  S  S  G  N  G  S  R  V  *  K  *  S  E  R  I  M  Q  Q  G  N  N  *  Q  F  E  *  G  C  H  *  Y  W  S  S  G  I  A  Q  W  G  R  D  A  G  K  Q  R  T  A  V  K  F  *  K  *  S  S  G  *  F  I  C  S  S  N  T  *  R  C  S  T  S  F  H  D  E  G  I  C  W  L  S  L  S  G  Q  F  A  G  S  *  S  S  T  Q  Q  K  K  A  *  L  I  L  V  C  I  F  D  I  L  V  Y  I  Y  V  C  V  T  G  L  F  L  V  Y  V  C  L  Y  V  Y  L  T  S  K  L  P  L  C  F  G  N  R  L  L  G  S  K  F  C  I  V  I  F  D  N  N  L  N  C  S  I  T  S  L  </second_frame>
            <third_frame>   K  K  H  K  F  G  C  T  S  Q  C  T  S  I  F  R  V  L  L  V  P  D  L  S  K  R  A  K  M  G  I  W  D  F  I  S  S  G  A  E  S  V  K  R  N  T  P  D  L  A  T  P  V  T  K  V  C  K  G  T  Y  Y  Y  S  A  T  A  V  K  M  I  D  N  V  V  R  V  S  G  V  Q  K  L  G  Q  Y  S  Y  M  P  D  E  E  G  R  A  K  I  V  S  F  S  T  K  F  A  K  N  A  S  V  Y  A  I  K  E  S  A  K  I  F  L  P   : G  G  K  A  V  S  Q  I  Y  S  Q  T  V  R  E  M  E  V  E  S  K  N  N  Q  N  A  S  C  N  K  E  I  T  S  N  S  S  K  V  A  T  S  T  G  P  L  G  L  L  N  G  A  E  M  L  E  N  R  E  L  Q  L  S  S  E  N  K  A  Q  V  D  S  F  A  H  Q  T  P  E  D  V  L  R  V  F  M  M  K  E  F  V  G  S  R  Y  L  D  N  L  L  V  L  D  H  P  H  N  R  R  K  R  N  *  F  *  Y  V  S  L  T  F  S  Y  I  Y  M  F  V  L  L  A  C  S  *  C  M  F  V  C  M  Y  I  *  L  L  S  Y  L  F  A  L  E  I  A  Y  W  E  A  S  F  V  *  L  S  S  I  T  I  *  T  A  V  S  R  V  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0124D18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35681" stop="35312"/>
                    <exon start="34743" stop="34406"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKHKFGCTSQCTSIFRVLLVPDLSKRAKMGIWDFISSGAESVKRNTPDLATPVTKVCKGTYYYSATAVKMIDNVVRVSGVQKLGQYSYMPDEEGRAKIVSFSTKFAKNASVYAIKESAKIFLPGGKAVSQIYSQTVREMEVESKNNQNASCNKEITSNSSKVATSTGPLGLLNGAEMLENRELQLSSENKAQVDSFAHQTPEDVLRVFMMKEFVGSRYLDNLLVLDHPHNRRKRN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0124D18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34409" stop="34218"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILVCIFDILVYIYVCVTGLFLVYVCLYVYLTSKLPLCFGNRLLGSKFCIVIFDNNLNCSITSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="39769" PGL_stop="39216"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39769" e_stop="39216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="39769" e_stop="39216" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39769" stop="39216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTTCTTACTAATTTCCGAAATCTCCTATCAATGGCACCAAAGGCAGAGAAGAAGCCAGCAGCTGAGAAGGCTCCTGCTGCCGCCGCTGAGAAATCAAAGGCCGGCAAGAAGCTACCCAAGGACGGCGGAGCCGCTGCTGCCGTAGACAAGAAGAAGAAGAGGTCGAAGAAATCAATCGAGACTTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTTCATCCAGATATCGGTATTTCAAGCAAGGCTATGGGAATCATGAACAGCTTCATCAACGATATCTTTGAGAAGCTTGCTCAGGAATCTTCTAGGCTTGCTAGGTACAACAAAAAGCCTACCATCACTTCTCGGGAGATTCAAACTGCTGTCCGATTGGTCCTTCCCGGTGAATTGGCTAAGCACGCCGTCTCTGAGGGTACTAAGGCAGTTACCAAATTCACTAGCTCTTAGAGATTTGTATTCGATTTTTTCTGTTGGATTTGTGATTTCAATTAGCGTTTTGGTGATGTAAAGAACGGGAAATTGAAATATAACATAGATTTGATGAAATT</gDNA_template>
            <first_frame> Q  F  L  T  N  F  R  N  L  L  S  M  A  P  K  A  E  K  K  P  A  A  E  K  A  P  A  A  A  A  E  K  S  K  A  G  K  K  L  P  K  D  G  G  A  A  A  A  V  D  K  K  K  K  R  S  K  K  S  I  E  T  Y  K  I  Y  I  F  K  V  L  K  Q  V  H  P  D  I  G  I  S  S  K  A  M  G  I  M  N  S  F  I  N  D  I  F  E  K  L  A  Q  E  S  S  R  L  A  R  Y  N  K  K  P  T  I  T  S  R  E  I  Q  T  A  V  R  L  V  L  P  G  E  L  A  K  H  A  V  S  E  G  T  K  A  V  T  K  F  T  S  S  *  R  F  V  F  D  F  F  C  W  I  C  D  F  N  *  R  F  G  D  V  K  N  G  K  L  K  Y  N  I  D  L  M  K   </first_frame>
            <second_frame>  N  F  L  L  I  S  E  I  S  Y  Q  W  H  Q  R  Q  R  R  S  Q  Q  L  R  R  L  L  L  P  P  L  R  N  Q  R  P  A  R  S  Y  P  R  T  A  E  P  L  L  P  *  T  R  R  R  R  G  R  R  N  Q  S  R  L  T  R  S  T  S  S  R  C  *  S  R  F  I  Q  I  S  V  F  Q  A  R  L  W  E  S  *  T  A  S  S  T  I  S  L  R  S  L  L  R  N  L  L  G  L  L  G  T  T  K  S  L  P  S  L  L  G  R  F  K  L  L  S  D  W  S  F  P  V  N  W  L  S  T  P  S  L  R  V  L  R  Q  L  P  N  S  L  A  L  R  D  L  Y  S  I  F  S  V  G  F  V  I  S  I  S  V  L  V  M  *  R  T  G  N  *  N  I  T  *  I  *  *  N  </second_frame>
            <third_frame>   I  S  Y  *  F  P  K  S  P  I  N  G  T  K  G  R  E  E  A  S  S  *  E  G  S  C  C  R  R  *  E  I  K  G  R  Q  E  A  T  Q  G  R  R  S  R  C  C  R  R  Q  E  E  E  E  V  E  E  I  N  R  D  L  Q  D  L  H  L  Q  G  V  E  A  G  S  S  R  Y  R  Y  F  K  Q  G  Y  G  N  H  E  Q  L  H  Q  R  Y  L  *  E  A  C  S  G  I  F  *  A  C  *  V  Q  Q  K  A  Y  H  H  F  S  G  D  S  N  C  C  P  I  G  P  S  R  *  I  G  *  A  R  R  L  *  G  Y  *  G  S  Y  Q  I  H  *  L  L  E  I  C  I  R  F  F  L  L  D  L  *  F  Q  L  A  F  W  *  C  K  E  R  E  I  E  I  *  H  R  F  D  E  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0124D18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39769" stop="39317"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFLTNFRNLLSMAPKAEKKPAAEKAPAAAAEKSKAGKKLPKDGGAAAAVDKKKKRSKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="40466" PGL_stop="42608"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40466" e_stop="40664"/>
            <exon e_start="40908" e_stop="41150"/>
            <exon e_start="41300" e_stop="41312"/>
            <exon e_start="41476" e_stop="41504"/>
            <exon e_start="41576" e_stop="41651"/>
            <exon e_start="41764" e_stop="41826"/>
            <exon e_start="42260" e_stop="42608"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.530" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.794" e_score="0.692"/>
          <exon-intron don_prob="0.983" acc_prob="0.796" e_score="0.517"/>
          <exon-intron don_prob="0.312" acc_prob="0.127" e_score="0.526"/>
          <exon-intron don_prob="0.000" acc_prob="0.980" e_score="0.524"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40466" e_stop="40664" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.954">
            <gDNA_intron_boundary i_start="40665" i_stop="40907" i_length="243"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40908" e_stop="41150" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.530" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41151" i_stop="41299" i_length="149"/>
          </intron>
          <exon e_serial="3" e_score="0.692">
            <gDNA_exon_boundary e_start="41300" e_stop="41312" e_length="13"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.794">
            <gDNA_intron_boundary i_start="41313" i_stop="41475" i_length="163"/>
          </intron>
          <exon e_serial="4" e_score="0.517">
            <gDNA_exon_boundary e_start="41476" e_stop="41504" e_length="29"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.796">
            <gDNA_intron_boundary i_start="41505" i_stop="41575" i_length="71"/>
          </intron>
          <exon e_serial="5" e_score="0.526">
            <gDNA_exon_boundary e_start="41576" e_stop="41651" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.312" acc_prob="0.127">
            <gDNA_intron_boundary i_start="41652" i_stop="41763" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="0.524">
            <gDNA_exon_boundary e_start="41764" e_stop="41826" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="41827" i_stop="42259" i_length="433"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42260" e_stop="42608" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40466" stop="40664"/>
              <exon start="40908" stop="41150"/>
              <exon start="41300" stop="41312"/>
              <exon start="41476" stop="41504"/>
              <exon start="41576" stop="41651"/>
              <exon start="41764" stop="41826"/>
              <exon start="42260" stop="42608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323488" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTTAAGGGGTCAGAGTGATATTTTTCTAACTTCAATCGTTTTCTTTTTTACTCTAGAGAGAATAGAATCTCCCGTTTTCTAGAAACCCGAAATATTCTGGATTGTTCGATACGGTCCGCTACTACGTTCTCTGGACGCAAAAGATTTTCCGATCGGCAACCGGAGGCGGCAGAGAATTTCAATTGCCGTCGTTTAG : GTGGTTCAATCATCAATGGATCATTCCTATCAAGTTAATCACAGTTGTGCCCTAAATCCTCCCAAAGACGGCCTCCCTAGCACCCAGTCTTCTAATGATGCACTTAGGCAGATGGGATCTGAAGGGAAAATGGGAGCAGTTCATGAAGAAATGAAGAGAGTGAGTAGACTTCCACCAAGCAGTACATATGCAACTCATCGGATGCGCGTCCTTAACAAAATCCTGCAACTTATGTCCATTCAG : ACATCCTACTTGA : AGGGCTGAGTGACTCTGTATGGGGAAAAT : GCTCTTCTTATAATTTTGGGTATATTCAAGGAAATAGCGAGAGATATTCCTGTATGAATTCTGGCCTATATCAGTT : ATTGGCCTATTACAGATTTCCTCTTCCTATAACATGCTCTGGTAAAGTATATAGCCCCTTCTG : AGAACCACTTCACAGGATGAGGAGTTGGAATTGCTATTTTCTGGGCTCTCTCTTGGATGATAAGAAGCAAAGATCATATTTTCAGCCGTTGGTTTATCAGATACGCAGTGGATCATTTATGTTGCTCACTTCGTCTTTGGTCTTCAGCTGCATCTTCGCAAACCGTTTCTTTTTGATGTAGAGATGATGCTTTGATTATTAAATAAGTTATACTGGTTATATAATAGGTCTAGAATTAAACCTGTTATCTCAATTATGTGGTGGATCATCTGGCTGTCAAAGTTAGTTGATTTCAACTTGAACTCTTGGATTCCAGGTGAATCAATGCTCCACAGTACAATATTTTGAT</gDNA_template>
            <first_frame> I  L  K  G  S  E  *  Y  F  S  N  F  N  R  F  L  F  Y  S  R  E  N  R  I  S  R  F  L  E  T  R  N  I  L  D  C  S  I  R  S  A  T  T  F  S  G  R  K  R  F  S  D  R  Q  P  E  A  A  E  N  F  N  C  R  R  L   : G  G  S  I  I  N  G  S  F  L  S  S  *  S  Q  L  C  P  K  S  S  Q  R  R  P  P  *  H  P  V  F  *  *  C  T  *  A  D  G  I  *  R  E  N  G  S  S  S  *  R  N  E  E  S  E  *  T  S  T  K  Q  Y  I  C  N  S  S  D  A  R  P  *  Q  N  P  A  T  Y  V  H  S   : D  I  L  L  E :   G  L  S  D  S  V  W  G  K   : C  S  S  Y  N  F  G  Y  I  Q  G  N  S  E  R  Y  S  C  M  N  S  G  L  Y  Q  L :   L  A  Y  Y  R  F  P  L  P  I  T  C  S  G  K  V  Y  S  P  F  * :   E  P  L  H  R  M  R  S  W  N  C  Y  F  L  G  S  L  L  D  D  K  K  Q  R  S  Y  F  Q  P  L  V  Y  Q  I  R  S  G  S  F  M  L  L  T  S  S  L  V  F  S  C  I  F  A  N  R  F  F  L  M  *  R  *  C  F  D  Y  *  I  S  Y  T  G  Y  I  I  G  L  E  L  N  L  L  S  Q  L  C  G  G  S  S  G  C  Q  S  *  L  I  S  T  *  T  L  G  F  Q  V  N  Q  C  S  T  V  Q  Y  F  D </first_frame>
            <second_frame>  F  L  R  G  Q  S  D  I  F  L  T  S  I  V  F  F  F  T  L  E  R  I  E  S  P  V  F  *  K  P  E  I  F  W  I  V  R  Y  G  P  L  L  R  S  L  D  A  K  D  F  P  I  G  N  R  R  R  Q  R  I  S  I  A  V  V  *  :  V  V  Q  S  S  M  D  H  S  Y  Q  V  N  H  S  C  A  L  N  P  P  K  D  G  L  P  S  T  Q  S  S  N  D  A  L  R  Q  M  G  S  E  G  K  M  G  A  V  H  E  E  M  K  R  V  S  R  L  P  P  S  S  T  Y  A  T  H  R  M  R  V  L  N  K  I  L  Q  L  M  S  I  Q  :  T  S  Y  L   : K  G  *  V  T  L  Y  G  E  N  :  A  L  L  I  I  L  G  I  F  K  E  I  A  R  D  I  P  V  *  I  L  A  Y  I  S   : Y  W  P  I  T  D  F  L  F  L  *  H  A  L  V  K  Y  I  A  P  S   : E  N  H  F  T  G  *  G  V  G  I  A  I  F  W  A  L  S  W  M  I  R  S  K  D  H  I  F  S  R  W  F  I  R  Y  A  V  D  H  L  C  C  S  L  R  L  W  S  S  A  A  S  S  Q  T  V  S  F  *  C  R  D  D  A  L  I  I  K  *  V  I  L  V  I  *  *  V  *  N  *  T  C  Y  L  N  Y  V  V  D  H  L  A  V  K  V  S  *  F  Q  L  E  L  L  D  S  R  *  I  N  A  P  Q  Y  N  I  L   </second_frame>
            <third_frame>   S  *  G  V  R  V  I  F  F  *  L  Q  S  F  S  F  L  L  *  R  E  *  N  L  P  F  S  R  N  P  K  Y  S  G  L  F  D  T  V  R  Y  Y  V  L  W  T  Q  K  I  F  R  S  A  T  G  G  G  R  E  F  Q  L  P  S  F  R :   W  F  N  H  Q  W  I  I  P  I  K  L  I  T  V  V  P  *  I  L  P  K  T  A  S  L  A  P  S  L  L  M  M  H  L  G  R  W  D  L  K  G  K  W  E  Q  F  M  K  K  *  R  E  *  V  D  F  H  Q  A  V  H  M  Q  L  I  G  C  A  S  L  T  K  S  C  N  L  C  P  F  R :   H  P  T  *  :  R  A  E  *  L  C  M  G  K  M :   L  F  L  *  F  W  V  Y  S  R  K  *  R  E  I  F  L  Y  E  F  W  P  I  S  V  :  I  G  L  L  Q  I  S  S  S  Y  N  M  L  W  *  S  I  *  P  L  L  :  R  T  T  S  Q  D  E  E  L  E  L  L  F  S  G  L  S  L  G  *  *  E  A  K  I  I  F  S  A  V  G  L  S  D  T  Q  W  I  I  Y  V  A  H  F  V  F  G  L  Q  L  H  L  R  K  P  F  L  F  D  V  E  M  M  L  *  L  L  N  K  L  Y  W  L  Y  N  R  S  R  I  K  P  V  I  S  I  M  W  W  I  I  W  L  S  K  L  V  D  F  N  L  N  S  W  I  P  G  E  S  M  L  H  S  T  I  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0124D18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40908" stop="41150"/>
                    <exon start="41300" stop="41312"/>
                    <exon start="41476" stop="41483"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVQSSMDHSYQVNHSCALNPPKDGLPSTQSSNDALRQMGSEGKMGAVHEEMKRVSRLPPSSTYATHRMRVLNKILQLMSIQTSYLKG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0124D18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40487" stop="40664"/>
                    <exon start="40908" stop="40945"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFSNFNRFLFYSRENRISRFLETRNILDCSIRSATTFSGRKRFSDRQPEAAENFNCRRLGGSIINGSFLSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0124D18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41123" stop="41150"/>
                    <exon start="41300" stop="41312"/>
                    <exon start="41476" stop="41504"/>
                    <exon start="41576" stop="41651"/>
                    <exon start="41764" stop="42260"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNPATYVHSDILLEGLSDSVWGKCSSYNFGYIQGNSERYSCMNSGLYQLLAYYRFPLPITCSGKVYSPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 14200 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2028 bytes was the average size of a spliced alignment
$ 11792 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1965 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 36 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-07 09:13:48
-->
