<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-10 21:00:27"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330695" ref_strand="+" ref_description="SGN-U330695        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | anthranilate synthase beta subunit (ASB1), identical to anthranilate synthase beta subunit GI:403434 from (Arabidopsis thaliana) | chr1:8837057-8839488 REVERSE | Aliases: F4F7.39, F4F7_39(evalue: 2e-72, score=269) genbank/nr: gi|15222532|ref|NP_173893.1| anthranilate synthase, beta subunit (ASB) [Arabidopsis thaliana] gi|541849|pir||JQ2340 anthranilate synthase (EC 4.1.3.27) beta chain - Arabidopsis thaliana gi|403434|gb|AAA32742.1| anthranilate synthase beta subunit gi|11067285|gb|AAG28813.1| anthranilate synthase beta subunit [Arabidopsis thaliana] gi|20466736|gb|AAM20685.1| anthranilate synthase beta subunit [Arabidopsis thaliana] gi|30023756|gb|AAP13411.1| At1g25220 [Arabidopsis thaliana](evalue: 1e-70, score=269)">
      <seq>aaacactctcccgctgtcttcggaaaacacttccacctcacttcaccgctgccgccgtcgccaccgtcaccgccaccgccaccgccaccgccaccgctgttgtagatcgacggcgtccaatcacagcctcgaacgaggacatttcattctctccacaatctctcatggccggaattgttacccctcatgtctcttcacaatccgccatcgttcacatcaatggcaaaaacacatttctctcgccccaaaaaaccctagattttccaattctctccggctccggaggctcgtttctccgaatgagaagcacaaagcggctcgaggtgaagccgcttgctgtatcgcagaacagttcagctacttgtgttgagttatcggatgatgttaaacggaataagagtccgattattgttattgataattatgatagcttcacttataatctctgtcagtatatgggagagcttggatgcagttttgaggtttatcgaaacgacgagctcactgtggatgagctgaagaagaaaaatccaaggggaatactaatatcacctggaccaggtacacctcaagattcaggcatatcattgcaaactgtactggaacttggaccaacaattccgttatttggtgtttgtatgggtttgcaatgcatgggagaggcttttggaggaaaaattgtgcgatctccatatggggtgatgcacgggaaaagctcccctgtatattataacgaaggcggggaagatggtttatttgcagggctatcaaacccattcacagctggtagataccacagcctggtaatagacaaggacactttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10823" stop="443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10523" g_stop="10072" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10071" i_stop="9572" i_length="500">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9571" g_stop="9501" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="523" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9500" i_stop="8391" i_length="1110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8390" g_stop="8353" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="561" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8352" i_stop="8255" i_length="98">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8254" g_stop="8144" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="672" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8143" i_stop="4888" i_length="3256">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4887" g_stop="4788" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="772" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4787" i_stop="796" i_length="3992">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="795" g_stop="743" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="825" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-U330695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10523" e_stop="10072"/>
          <exon e_start="9571" e_stop="9501"/>
          <exon e_start="8390" e_stop="8353"/>
          <exon e_start="8254" e_stop="8144"/>
          <exon e_start="4887" e_stop="4788"/>
          <exon e_start="795" e_stop="743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCTCCCGCTGTCTTCGGAAAACACTTCCACCTCACTTCACCGCTGCCGCCGTCGCCACCGTCACCGCCACCGCCACCGCCACCGCCACCGCTGTTGTAGATCGACGGCGTCCAATCACAGCCTCGAACGAGGACATTTCATTCTCTCCACAATCTCTCATGGCCGGAATTGTTACCCCTCATGTCTCTTCACAATCCGCCATCGTTCACATCAATGGCAAAAACACATTTCTCTCGCCCCAAAAAACCCTAGATTTTCCAATTCTCTCCGGCTCCGGAGGCTCGTTTCTCCGAATGAGAAGCACAAAGCGGCTCGAGGTGAAGCCGCTTGCTGTATCGCAGAACAGTTCAGCTACTTGTGTTGAGTTATCGGATGATGTTAAACGGAATAAGAGTCCGATTATTGTTATTGATAATTATGATAGCTTCACTTATAATCTCTGTCAGGTATGCTCAATTTTTCGAAGTTTGAATCAGAGAATTGAATTTTGAATATAGTGAAATGTGGAGATTGTTGTTTTAGTATTCCTTTTATTCGTTTTGTTTTATTCATGGAATTATAATGAATCTTCAAAATGTATAACATTGAGAAATGTACAGAATAGGTGAGGGTGTATCCGAAATAACTTCTATCTCTTGTGGGATTACGCTGCGTATGTTGTTATTGAGAAATGTACCAAATTAACTTAGTTTTTCTTGACTATTCTGCTTTGAGTTTTGTGATTTTGAAGTATTTAGAAGCTTGAGAATTGAACTGATTTTAGAAATAGAATTATTGCATCTGCTGAATAAGTTAGAAAACCAATTACTTTCTTAGTTTGTCGCTTCATTTTTGTTAATAGTTTGAAGTCTATTGAAGTTGGAGTTTGATATTGATTTTGGAATATTGATAATTGCGGACAATTGTATTTAAGGTGTTTCTTAACTTACTCTTGTTTTCCCCGTAGTATATGGGAGAGCTTGGATGCAGTTTTGAGGTTTATCGAAACGACGAGCTCACTGTGGATGAGCTGAAGAAGTAAGTTACAAAGTTAGTTATTGTTTATAGAATTTTTTTTTGGTCCAGCTGTTGTAGTATAGTAACAAATTCACCTTCACCATGCTGGTATGGGGATCATCCACCTTTATGTTAGACTTGAATTCTATAAAATTTATATTTTGATACCTTTGGTTTCAGCACTTCTATCTTCTCTAGTTAACTCATGATCGTTAGATTAAGGTTGGATACGTGACAGGGGTGATAACTTTGTTGCTTCCTGAGAGATGATAACCTCTTTGTAATGCTTGCTCTTCTTGATGTTTTTTTGTTAATGATATCCTTCTTATTTCATCAAAAAGGCTGCACACTCGTTCTCTAATTTTGATTGGTCTTTTGTATTTTCTGAATTCGCTGCCATGATTACATTCAAATTGAATAAATCTATTGGTAGAGATGGAGACTGCCGCAGAACTGAAAATTTGAGGTTGCACATTGAGTGTGTTAGAAATTGTATGTCTGGATGATAACTGCATAATTATCAATTCTGATGAGCTGTAATTTCTTGGGTGCATAATCTTATTTTAGTAAATCTAACAGAAGATAGTGAAAAATAATTATAATAATATAATGCAATGGTTTGAGAGTGGAAGTATAAAGGAAAAAAGATTACTCATTAATCAAATGCTTATTTTTAGCTCGTTTTTCTTTACTCGTTAGTTAGAGTGGTGATAAGCAGCTCCCTAGTTGAATTACACCAACAGCCTCCTCTCTTTTAATTAACATTATAGATAAGAAAAGAAAAAAGGACAGATGATTTGCTAACTTTTTCATAGATGAGATGCATGTGCACCATACTAGGTCCATTTCTAAGGCAAAAGATCCATTTTTTTCTTCATCAGGTTAGTTTCATATGATTTAGAGGGGAACTGATCTGTGAATAAAATGTTTATTGATATTGGTGAATCATTATGAGATAAAGGCTATAAAGTAAATTTAATTGCAAAGATAATATGATTTTTTTATTGGTTGAAAATTTAAGGGGATTTTGTGTTTTTGTTTAGACCTGGCAAGCAATTAGTGTTCTTTATTTTACTCCGCAGACCTGATTAAGTTAATACTATGTTGTTTTTTGAAAAAAATATTTTGTAGGAAAAATCCAAGGGGAATACTAATATCACCTGGACCAGGTAGGAAGACTCACCCAAATATATCAAGTTACCAGTTTCACATATATAGAATGTATGGAAAGATCAGTACTTTCAATCTTATTTTATTCTGGGAATAGGTACACCTCAAGATTCAGGCATATCATTGCAAACTGTACTGGAACTTGGACCAACAATTCCGTTATTTGGTGTTTGTATGGGTTTGCAATGCATGGGAGAGGCTTTTGGAGGTTTGTTTTTGAATCAACTATATTTGGTGCTTTTGTTTCTCAATTAGTTTGTCCTATCTTATGAATTTGCTTCTCTTAAATTTGAAAATAAAAAGAAAATAGCTTTTCAAGTTCTTTAAAAAATTGGGTCATTTCTTTTTATCTTTTTAAGGCTTGGTGGATAGAATTACCAGGTACCTGTGGTAGTGGGACATGGTAGGTACCTCATTGTCCCTCTGCATTATCAGACGTCGCCAGGATTTTATCCCAGAAAAGTTTATTGTCACGTGAATTATATATATATATATAGACATTTTGAAGAATGGTGGTTATAAAAAAAATATTGTGAAGAATGGTGGTTGTCAAGAAAATGTACATTGTGAAGAATGGTGGTTATGAAAAAAAATATACATTGTGAAGAATGGTAGATGCTTCTGTAAATCGTCAGATATGTACCCATATGTACACACTTAAGTATCTTCAGTTTTGAGGTATTAGGTAAAGTAATTACATCGCAAAATTTGGTTTTGTTTGGTTTCTCTTTTCATTTCTTATATTTTGAACTTTTATAGTAATGTTGGCATTATTTATACTTGAAAGCACCTAAAAGAAAATAGTAACCTTGATGTTATTGTAGTAGTTCTCCTCCTCAAAGATAGATTATGACTCTAATAGATAAGGTTATGCTATTTAATGCATCTTTGTTTGGTTTTAGGTGTTTGTTCATTTATACTATTTCTTATATATCTGTATAATCGAATCTAGATTAAAAGATTTTAAATGGTACTATAAATAGAATCCGCATCTTAAATGAGTTTTTGTCCTTTTCTTTTTCAATGAGTGTAAAATTGTGCAACTTATAGGAAGGAGGACATTTTAATTGAATTCTTTTTTCAGGCTTTCTTGTTTTACACCCAAATAGTTGATTATACAAATAAAGAAACAAGAACAATAATTGTCTTAAAAATTATTCAAAATAATAATGATAGATGGTGATTATGGAACTAACACCAAAATAAATTACATGAGTAGATATTCTTACACACACGGATCTGTCTTGGTGCCAGTTTTAGTAATACTTACCTTAGGATTACCTTTACTTATCCAAAAAGAAGAAGAGACGAATAGCATAAGTATGGAGTAGCAAATAACATATTTTTTTTCTTTTCAATCAACAAGGGTATTGTCTAAAGGTATAATTATAAACAAGGATTCATCCATGTCAAAGGACACACACATCATCGCGTATAGGAGTTTGCTCATATTGCCATTCCCAAACCCGGATAAGGGAAGAGTGTTGCGATAGGATAACAACTAGTGTAAAACTAGTGACTAGTTAATTTATGATGAACTCACGATACAAAGTACATTTCAAATGGAGCGAAGTAGATAATGAACAATTATATTGCCTACCTCAATTAGCTTGAGATTGAGGCATAGTAGTAGTTAAAACCAAATGCTTGTTTTAGATTGAAGCAATATATGCAACTTTTGGTACAATCTACCATAATTCCCACAGGATATGCATTTGCTCCAAAAATCTAGTGTTTAATCGTTATAATACAATGAAATTGAAGAAAATGAAATACCTTGTATATACAAATTTCTATTGCCACCCCTTTCCTTTTATCTCTTTCCAAGATTGTCCTCTTGATCATGATTTTGTCCTCGAGCTTTCAACATAATCTCTCATAATTTAGGTTTATAATTCTACTTTTAGTTGAATTCCCCCATCTGTATCTACACATGATTCCATATCCCCGAATTTTAAATTTAGGTCACAGAGAATCCGACCTCTAGATCAACATCCGTATCGGACACCCGCACCTGTGTCCGAGCAACTTAGCTTCTTGATGGCATGGTTATAACATACACTTATCATGGAAGGTTTATATGGATATGTGTTATAGGATATATATATCACCTAGTGGATCCAACAACTTCTTAATTTTAAAATATAAGCATTAAGATACATCCTATTAGGAGTACAATGCAGCAGTTCCATATGATCAAAAGGACAATCTTGGAAGGAGATAAAAGGAAAGGGAGTGGCAATAGACATCCTGTTAGGAGTACTCCTACTTCTTATTTTTGGTGTAAAGAGGAAGGGATGGAAGAAGCTGCACAAATTTTGGACTTTATAGGCTCTTTGTATTCTATTAGCCTTTTTGTTTCGTCTCTTGTTGAAAACCAATTTTTGGAGGTCTCCAGCATATCCTTAATGTTGATGAATACAAAATTATCTTCTTTTTTTTTAAAAAAAAGAAAACTTGTTAAAGGTTCTGTGATTTAAGAGGGAACAAATTGAAGGTGTTTGATTGACCTCTTTTCAGGTTATTCCATGTATGGTAATGGCTACGGACGGAGGGAACACTGAAATATGTAACGATTTTAAAGGTTCAATTGGTACAAAATGAATTTCAGATGCATTTATTGACATCAAGTTTGTAAAAAGAACCAAATTCTTGTTGGTGATTATTTATATTAAAATAATTGAATATAAATAATCACCAATAAGAATTTGGTTCTTTTACGAACTTAATGTCAATAAATGATCTGAAATTCATTTTGTCCAATTGAACCATTAAAAACTGTTAGATATTTCAGTGTTCCCTCCTGTTCGTAGCAATTACCATATATGAATAATCTGAAAAGAGGTCAATCAAACACCTTCAATTTGTTTCCTCTTAAATCACAATTATCTTTTTCTTTTTGATAAAGATAATATTGTATTCATCAGCATTAAGGATATGCTGGAGACCTCCAAAAATTGGTTAAAAAAACAAAAAGGCTAATAGATTACAAGAGCCTATAAAATCCAAAATTTGTGCAGCTTCTTCTACCCCTTCCTCTCTATACCAAAAATAAGAAGTCCTCTGTGACTTCTGCATTGTACTCCTAATAGGATGTCTCTTGGAAACATATTTATGCCCCTTCCAAAAATGGAAAAGGAACTGAACACAATATAGACCTTCATTTACTGGAAGTTCACTTTTAAGACTGAAATTAGTCCTCTAGTGTCTTGAATGAGGACCTGTTCAGAGCATAAATTTTCTGTTGCTGACTAGCTAGAGCAGAAACATAGCACACTAGTAAAAAATCATAATGCTTTAAAGAGAACTAGTGAGTTGTGCAAAAGAACAGTTGAAAAGGTAAAGTTTTGGGTATTGTTAAGTTGACGACCAAAAGCTCTACTTTCTTCATTCTTTTTATTCAACTATTCAATTGTGTATTCATCACACTTAATCCTCCTTAATGTGAATTTATCCCATTGCAGGAAAAATTGTGCGATCTCCATATGGGGTGATGCACGGGAAAAGCTCCCCTGTATATTATAACGAAGGCGGGGAAGATGGTTTATTTGCAGGGCTATCAAAGTAAGCTCTTGTCTATCTGATAATTGATAGAAACTTGTTTTAACAAATTACGATTTGGTCTTTCAGATTATTTCTGTATCAACATAAGTGAATTTTTCCATCGAAAGTTAAGATCATTCCTGCGGATTGCAAATTAGTTGTTTGCACTTGATCCGTGCTAGATCACCCTGTACAATTTGATTTGGTGAAGTTCAAAGACTACAAAACAACAAAGAAGGTGTTTCCGGCTTTCCGCTAGGCTAACAAAAGCCTGTATATTAGATACTCAATGACATGGCAGCACAATCTCACATTCAGCTTGATTGTGTGACTGGGGTTGTCAACACCACCTTCTTGACTTCATGACCATCTTTCTCTGCCTGACTTCAGAGATACATGGCTGAGTAGGTGGTTAAACAGGAAGGGGCTGTGGTGCTTTGCCTTTAAGATTAATTAGTGTTTCACGCTGCTGCTTCAATCGTGCTGTTTTTCCTATTTTTCCCATTATAGCCAATAAGAAATCTGATGATTTCACCGACACCCCAAGCCGTTCAATCTTCAGTGTGCTTATGTGGCTAATCTCTTCTGATGTTTCTTTCTTTGGAGTTTGGACCAGCAAAAGTCAAGCTTTTAGAATGGATTCAATGGTGGGTTTCTCTCAAGGTGTCCTACTTGAGCATTGACAGTAGTATGCGAAGTGTCTGAACTCAAAATTTTCAGTCTGGTATAGAAATACTCGGGTGGTTTGCTTTAAATTTTTGAGCGACCATCCAATGCCAATGGTTTGTGCAAAGATTAAACCTCACATCGGAAGTTTCAGTGTCTCTCTGTGAGTTCTCCTTCAACACTAGCAATAACTGGGTTGAGCATCCCGCTGGAGGAAATTCAATAAAGTTCTTGCTTTCCTTGAAACATAGATCACAACCAGAGATGCCAAAAGCAGTAAATCTGCAGAAACTCCAGTGATAACTGCGTTATATTGTCAAATTTCTGGGACTTCATTCTCCGATTCTATTTCAATGCCCAAACTGCAGGTTTCAAGTTCTGCGTCACGATCTTCCAACCTCCAGTTATTTCTTCTTGTCCTATTAATTGTGTCTTTGATAATTTGTCTTCTGTGTTGATTTCCTTTGAGGTTTTCTCGACCTGCTCAACCTTGTAGTCAGCTTCTGCTTGCTCAAATTTGTAGCTTGTTAGAGTTCACAGCTCATTTGTTTGCACAAGTATGTGAAAGCTCATCAAGCACAATGCTTCAAGGTTTGATGGTCTCTGGTTCTCTTGACTAGGATCCTTCATATCAAGACTCTTGACCTCTTTCATCTGGTCATCTGGTGTCAGGACCTTCAAGCTCTTCTTTATCCACTTTACTGGAACTAGTAACTTCACCACCAGCTTTTGGTGTGGTTTCCTCCACTCCATCACCTTGTACACTCTGGGTAACAACGTCTGTGCTGTCGATATCAATATCTGTAATTCAACCCCTTCCAGTTCGACAGTTTCCACCTTCAAGAACCCCACAATATCTTCAACAAACTTGACAGTCGCAAGTTCATAATTAGTCTCTCTCCAACTCAACTCCAGAAAACCACTTTGAGAATACTCTGGTCGTTCCAGAATGCATTTCAACAAAAACATACCTAGTGTAATCCCACAAGTGGGGTATGGGGAGGGTTGGATGTCCAGGGACTTTACCCTAGCTTCTGGGGTAGAGAGGGTGTCCCCGATAGACCCTCGGCATGGCACAAAATTTAGACTAGCAATAAGGATTAGGAATAATAGAAGATTGAGGAATATCTTCACAGGATATATGAGTGGCCTACTGGTGGTGAAGGGCAGGATAGGATAATACAGAGGGAGAGTGCATTACCAGGAATTTCAAAATGGGTACTGAAGGTGATGCCGAATGTTGGGCCCAATGTGGGATATCAAAAAGACTAGGGAACTAACTTCCTTCTCAGCTCATGGTGTGCATAATGCAATTCTAATGATAGCTAATTTTAAAAAATCTCTGAATTGATATAACCCCTTGTTGATATTACTAGTCTTAGCACCACTTTCTAGAAAATTCCCAAGAGAAACTAAATAAACAACCTAAGCTTAAAATTGAAAGTTTTACCTTTTCAATGGACTAGGACTATGTGAAGAGTGGGAGAGGAAGATAATTGAATGTTACTTAGGCTACTGGAGATAAACTGCACCATTAAAGGTTTGTTGGGGTAAACCTCCTAAAATTGAAGTGTCAGCTTAAATGTACCTCCATCCCGAGGTGTGTAATCAGGTACTTCCTCTCCCATAAATTTCTTGAAGATCAGCTCCAAAGATGTTCTTGTGAATCACGTGGTCGGTGCCTGAAGTAGCCATGAAATTCGTTCATAAATATGAGTTACATTTCTTTATCGCCCTCAACCCCACCCCCACCCCCCCAAATCTTGGTTTTCTGGCAGATTTGAGGAGTCTTGAGCTTGCTGCAGTGACCCTTGATTATCATTAGATTCCTCAGAATCAAGAGGACTGCCTTGATTGAATCTTATAGCACCATTGTCATATCTTCTCAAGCTTTCTTGGTGAAGAAAGATCCCCCAACACCTATTTGGCTGGTAGGATAGATGCTTAGGCCTAGGGGAGAGGTAGTTATGGTTTATGGAAGAATCGACACTAGTGTTGTTTTATTGATCATCGCCTGATTCAGAGGCGTCCCTAAGGAAGAAATAGCTTTTCTTCCAGAACGATGAGTAGTTGAACTCAAGGAGCTGGTTTTAGATCCAAGATTGGAGGCCTTGGGGGACGGCTTTGACAAGAGCTGGAAATTTCTTTCCTTTTAGCGATTTTTCTTTTTCTTGGATATAGTTTTTCTTTGTTACTAAGAGAAGATTTTGAAGATACTTCCAGAGTTGGGATTGAACTTAATTATGTCAATTTCGGTTAGCATTTATCCAAAGCTTCTTTCCTCTTTGACCAGATTGCCTCTTAGGTCATTTCTTTCCTGATTCACCTCCTTTCTTTTTTAATTCCAAGTCAAACTTTTGAAAGCAGGCTATCATATTTAAATGATGCTGACACTCTTCGTAAGTCGAGGTGCAATTTTTGTAATTTACAGTGTAGGCTCGTTCATTCAATTAAGCATGTATCTATGCCTGCTCTCTTTAGTGTTATGGTCTCACATAAGTGCAAGTTTTTTCTGCGTTTACTATTTAGTGTTTGTCTCAAGCAATATTGACGAAAAATCTTTGACATATGTGGCAACATAGGTAGACCAGAGTTTTGATTTTGTGTTCTGGATTTTAGAAAAGGATTAACTTACTGCATTCTTGATAAATTATTTATACATGTTGAATGGGTTTCTTAGTGCAACAGCAACTAACCAGCGTAGTCCCATAAGCATGCTGCGTCTGGGGAGGGTAGAGTGCACACAGACTTAATTCCTATCTTGAGGAGGGGATTTCTTAATTCAAATCCATGATTTTGGCCAAAGTTAGCGGGTTTTGCCGAACCCACAGCTAAAACTCTAGCTCCACCTATGTTTAGCTAAAGAATCATGTCCATTTTATAGAATAGTTGATGTTGACCTAATACAAAAATGAAAGAGTTTAAGTGTTGGGACATGTGGAAGCACGTTGATCATGCAAGTGTCATGCGCAGTTCCAATTTGCTGGGATCTTCCCTCACTTGTATGCTTGTAATATTTTCTCATCAACTACTCATTCACTTCCACCCACTTAATTACTTCAGTTGAATTTTGTTTTGACCTTGTATATATTAAGTCTAGCAAATATCGGAGCCACTACCACTATCTTAATGTAGGTAGAACTCTTCATCACCCTATAATTATCATGGTAAGACTAATAATATGTTATGGATGTCAGAATTGTCTGGTTGGAGCACGTCTACAAGTGAGCACATATAAAACTACTATAGAGATCCATGTCTATCCATTGCAGATTGTTTAATCTGTGGTCTTCTAAAAGCTTAGTCATATTTATGTTGACATTTTGATAATACCTTTTTCATTTCAGCCCATTCACAGCTGGTAGATACCACAGCCTGGTAATAGACAAGGACACTTTCC</genome_strand>
        <mrna_strand>AAACACTCTCCCGCTGTCTTCGGAAAACACTTCCACCTCACTTCACCGCTGCCGCCGTCGCCACCGTCACCGCCACCGCCACCGCCACCGCCACCGCTGTTGTAGATCGACGGCGTCCAATCACAGCCTCGAACGAGGACATTTCATTCTCTCCACAATCTCTCATGGCCGGAATTGTTACCCCTCATGTCTCTTCACAATCCGCCATCGTTCACATCAATGGCAAAAACACATTTCTCTCGCCCCAAAAAACCCTAGATTTTCCAATTCTCTCCGGCTCCGGAGGCTCGTTTCTCCGAATGAGAAGCACAAAGCGGCTCGAGGTGAAGCCGCTTGCTGTATCGCAGAACAGTTCAGCTACTTGTGTTGAGTTATCGGATGATGTTAAACGGAATAAGAGTCCGATTATTGTTATTGATAATTATGATAGCTTCACTTATAATCTCTGTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGGGAGAGCTTGGATGCAGTTTTGAGGTTTATCGAAACGACGAGCTCACTGTGGATGAGCTGAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCAAGGGGAATACTAATATCACCTGGACCAG..................................................................................................GTACACCTCAAGATTCAGGCATATCATTGCAAACTGTACTGGAACTTGGACCAACAATTCCGTTATTTGGTGTTTGTATGGGTTTGCAATGCATGGGAGAGGCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATTGTGCGATCTCCATATGGGGTGATGCACGGGAAAAGCTCCCCTGTATATTATAACGAAGGCGGGGAAGATGGTTTATTTGCAGGGCTATCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATTCACAGCTGGTAGATACCACAGCCTGGTAATAGACAAGGACACTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331258" ref_strand="+" ref_description="SGN-U331258        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G06780.1 | Symbol: None | glycosyl transferase family 8 protein, contains Pfam profile: PF01501 glycosyl transferase family 8 | chr1:2083423-2086961 FORWARD | Aliases: F4H5.13, F4H5_13 (evalue: 3e-05, score=45.8)">
      <seq>aaaaacccctcacttcagttttttcttcttcactttatatgaaaagactcaatttttttacccttataatctaaatctttttgcatatctagtttggtgatccaatacccttttggcttttagtttgttttttcaattttttcttgttcactttgtattaaagactcaatttttttgttcactttgtattaaagactcgtttttatccgtgtaatatgaatctttttgcatttctggtttagtgattcaataccttttggatttttgtttcatcaattctttttcttgttcagtttgtatcaagactctttctttttttaatcattataatatgaatctttttgcatatcttgtttggtgatttaataccattttggtttatgtttcaattttttcttattcactttgtatcgagactcattttttatccttgtaatctgagttcatttgcatatgttgtttaaattatccagtacccttttgtattgtggtttatatttatgcttttcatgaggctattcatcattactccattttatttttttgtttgactttctatcaagactcaatttttatccatctgaatctgtttttgtataatcttgtttaatgttccaatacccttttggcttttgtttcatctttatgctttgatgaggctattacgacgatgtacgaggatttctatcctctgtttgcttgctatttcagtattcactcctgttttcttgctttcatttaggctcaaaaaccttaacactgatgcatctaaagactttgttgaagacttatcgattcttaagcatagaatagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="17248" stop="19419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17548" g_stop="17796" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17797" i_stop="17912" i_length="116">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17913" g_stop="18428" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="765" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18429" i_stop="18517" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18518" g_stop="18552" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="800" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18553" i_stop="19101" i_length="549">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.837" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19102" g_stop="19119" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="818" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-U331258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17548" e_stop="17796"/>
          <exon e_start="17913" e_stop="18428"/>
          <exon e_start="18518" e_stop="18552"/>
          <exon e_start="19102" e_stop="19119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCCCTCACTTCAGTTTTTTCTTCTTCACTTTATATGAAAAGACTCAATTTTTTTACCCTTATAATCTAAATCTTTTTGCATATCTAGTTTGGTGATCCAATACCCTTTTGGCTTTTAGTTTGTTTTTTCAATTTTTTCTTGTTCACTTTGTATTAAAGACTCAATTTTTTTGTTCACTTTGTATTAAAGACTCGTTTTTATCCGTGTAATATGAATCTTTTTGCATTTCTGGTTTAGTGATTCAATACCCTTTTGGCTTATTTTATCTTTTTTTTTTCCAATTTTTTCTAGTTCACTTTGTATCAAGACTCATTTTTTATCCTTGTAATATGAAGTTTTTTGCATATGGTTGGTGATCCAATACCTTTTGGATTTTTGTTTCATCAATTCTTTTTCTTGTTCAGTTTGTATCAAGACTCTTTCTTTTTTTAATCATTATAATATGAATCTTTTTGCATATCTTGTTTGGTGATTTAATACCATTTTGGTTTATGTTTCAATTTTTTCTTATTCACTTTGTATCGAGACTCATTTTTTATCCTTGTAATCTGAGTTCATTTGCATATGTTGTTTAAATTATCCAGTACCCTTTTGTATTGTGGTTTATATTTATGCTTTTCATGAGGCTATTCATCATTACTCCATTTTATTTTTTTGTTTGACTTTCTATCAAGACTCAATTTTTATCCATCTGAATCTGTTTTTGTATAATCTTGTTTAATGTTCCAATACCCTTTTGGCTTTTGTTTCATCTTTATGCTTTGATGAGGCTATTACGACGATGTACGAGGATTTCTATCCTCTGTTTGCTTGCTATTTCAGTATTCACTCCTGTTTTCTTGCTTTCATTTAGGCTCAAAAACCTTAACACTGATGGTATAATATTTTACTTCTTATTGTTACTTTTCGATCTTTGAGGTCGTAGTTTAATCTGACTATTGTTTCTGTATTCAATTTGTGTGCAGCATCTAAAGACTTTGTTGAAGACTTATCGATTCTTGTAAGTTTTTGGCTTGTTTAGTTCAATGTGTTTTATATTGTTTCTACTTGTGATTTGTTGACTATTGTTGTTGTTCCTGCTCATTCAAGCAACTTATAAAGAAAGAAAGGAAGAACATAAGCTTTTGTATAGTTTAAGTTTATTATGCATCTTTGACACCACATCATTGAAAGAAGAACAAAAAAAAGCTTTTGTATAGTTAAGTTCATTTATTTATCTTTGGCACCATATATTGGAAACATCAAGGTGAGATAGGTAATTTTCTTTACCTATGTTGCCCGGACTCTTCAAAACATGTAGAATCTTCCAAAAGTAGTGTATGTTCGGAGAATCTAACACGTGTTACGTTTCCCTCATTTCCCTGATCCTGTGAAAAGAAAACAACTAAGGAGGGGATTTCTAATTCTTCAATTTATTCCTAGGCCCAAACACTGTTTTTTTCTACTTCATTTTGCATAATTGTCTTATTAGTGTTATCATACTAAACAAAGAGAAACAAGTATCTGACTGTCATTTTTATTTTTGGGGGTTTCGGATTCTTGTCTTCAGAAGCATAGAATAGATGCT</genome_strand>
        <mrna_strand>AAAAACCCCTCACTTCAGTTTTTTCTTCTTCACTTTATATGAAAAGACTCAATTTTTTTACCCTTATAATCTAAATCTTTTTGCATATCTAGTTTGGTGATCCAATACCCTTTTGGCTTTTAGTTTGTTTTTTCAATTTTTTCTTGTTCACTTTGTATTAAAGACTCAATTTTTTTGTTCACTTTGTATTAAAGACTCGTTTTTATCCGTGTAATATGAATCTTTTTGCATTTCTGGTTTAGTGATTCA....................................................................................................................ATACCTTTTGGATTTTTGTTTCATCAATTCTTTTTCTTGTTCAGTTTGTATCAAGACTCTTTCTTTTTTTAATCATTATAATATGAATCTTTTTGCATATCTTGTTTGGTGATTTAATACCATTTTGGTTTATGTTTCAATTTTTTCTTATTCACTTTGTATCGAGACTCATTTTTTATCCTTGTAATCTGAGTTCATTTGCATATGTTGTTTAAATTATCCAGTACCCTTTTGTATTGTGGTTTATATTTATGCTTTTCATGAGGCTATTCATCATTACTCCATTTTATTTTTTTGTTTGACTTTCTATCAAGACTCAATTTTTATCCATCTGAATCTGTTTTTGTATAATCTTGTTTAATGTTCCAATACCCTTTTGGCTTTTGTTTCATCTTTATGCTTTGATGAGGCTATTACGACGATGTACGAGGATTTCTATCCTCTGTTTGCTTGCTATTTCAGTATTCACTCCTGTTTTCTTGCTTTCATTTAGGCTCAAAAACCTTAACACTGATG.........................................................................................CATCTAAAGACTTTGTTGAAGACTTATCGATTCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATAGAATAGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330358" ref_strand="+" ref_description="SGN-U330358        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G06780.1 | Symbol: None | glycosyl transferase family 8 protein, contains Pfam profile: PF01501 glycosyl transferase family 8 | chr1:2083423-2086961 FORWARD | Aliases: F4H5.13, F4H5_13 (evalue: 7e-59, score=223) genbank/nr: gi|18390688|ref|NP_563771.1| glycosyltransferase family 8 [Arabidopsis thaliana] gi|25406938|pir||F86202 hypothetical protein [imported] - Arabidopsis thaliana gi|7523701|gb|AAF63140.1| Unknown protein [Arabidopsis thaliana] gi|15028087|gb|AAK76574.1| unknown protein [Arabidopsis thaliana] gi|20259311|gb|AAM14391.1| unknown protein [Arabidopsis thaliana](evalue: 5e-57, score=223)">
      <seq>gtggacaagaaaaaaatcaacgaaatctatctgagcagaaagtgtccccatctagagaaaaggagaagtccaaaccagaaggggttcaacacagtcgaagcatacagtcacatctgcgaaggccattagatgagaaggtaaaagagatgaaagataaggtgataagggccaaagcgtacttgagttttgcaccaccagatagcacctctcattttgtgaaagagataaagctacgaattaaagagctagaacgagcaatgggtgacgttactaaagattctggtttgtcaaggagggccacacaaaagatgaaagccatggatgggaccctgctgaaagcaagcagaatataccctgattgctcagctatggtgaatacactacgtgccatgatgtataatgctgaagaacagcttcgatcacaaagggatcatacttccttcctcgtacagctcgctgcaagaactacaccaaaaggccttcattgcctttccatgcggttgaccacagaatattttgatctgcagcctgaggagcgggagtttcctaaccaacacaaactgcaggatcccaatctctatcactttgctgttttctcaaacaatgttttggcatgttctgtggttgtcaattcaactgtttcaacccgctaaggatccagagaaattgtcttccatatagtgactgattctctcaaccctgcccagcgatgttcgatgtggttcttgaagaaatcctccctggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19457" stop="22888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19757" g_stop="19818" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19819" i_stop="20524" i_length="706">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.449" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20525" g_stop="20757" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="295" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20758" i_stop="21464" i_length="707">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21465" g_stop="21822" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="654" r_length="359" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21823" i_stop="22500" i_length="678">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22501" g_stop="22588" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="746" r_length="92" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-U330358" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19757" e_stop="19818"/>
          <exon e_start="20525" e_stop="20757"/>
          <exon e_start="21465" e_stop="21822"/>
          <exon e_start="22501" e_stop="22588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGACAAGAAAAAAATCAACGAAATCTATCTGAGCAGAAAGTGTCCCCATCTAGAGAAAAGGTATTATTCTGTATAGTGTGTCATCGTAGCTGAAGATAGAGGAGGTTATAATCTCTTATCTAGTGAGAGTGTTCGATTTTGATCGCTTAGTGCTATACAAGAGAGGCACTCATGATAGTTGTCTCCAGAATTTGTGACTTATGGACTTACTATAACTTCTATTTGGCTGCATTGAATGGATGAAATCCAAATTTAGTAGCATGTACTGTTGGCAAATTTTAGAGTTAGTTAGACATATGTTATTCTCCGTTTCCCTCTATTTAAATTGTCAAGTGGTTGCTTTGATTGTGGTGATCATCTTGTTGATGCGTGGTGACGAAAATAAGAGATCTCATATTTGTCATTTCTCGATCTAGAATGAGATGAATTTTCTAACTTCAGTTCTAGTTGCAATGTCAACATTTGAATGTACAATTTAGGGGCTTTAACTGAAGTTCATGATATATCAAGGATGCCATGTTGAATTTTTACTTTTTCAACATGGTTGCCTGTAGCAATTTGCAAAAAGTTAAAATGTTAGATTTGGTATTCCAGTTCCGGGATCTAAAGTACTTGTTTGATCCTTTCTTTCCTTATAGATATCTTCATCTGTATACATTTCACTTTGTCACGTGCAACTAGAAAGTCAATTATGTTATATTGTTCATAGCAAGTACATGCTTATTTTGAGTTTGGAGTCTGCTGATTTCGGCTAGGGTTGTCGCAGGAGAAGTCCAAACCAGAAGGGGTTCAACACAGTCGAAGCATACAGTCACATCTGCGAAGGCCATTAGATGAGAAGGTAAAAGAGATGAAAGATAAGGTGATAAGGGCCAAAGCGTACTTGAGTTTTGCACCACCAGATAGCACCTCTCATTTTGTGAAAGAGATAAAGCTACGAATTAAAGAGCTAGAACGAGCAATGGGTGACGTTACTAAAGATTCTGGTTTGTCAAGGAGGTGAGGTCATTTTTCTTTACCACCTCTCCCCCTCACACACACAACAATACACCTAACAGGCTATAACATGCTTCTTCATTTTTTTAAATATAAAATTTAATCAGTGCAATTTACAGAACCTGGCTCATCTTATGTGTCAGTTGCTACTCAGAAGCATAAAATCTGTTTTGGCTGAGTAGTGGATTTGTCATGTTATGATCTGTTCTCTATGTTGCTTGGACTCTCATGTCGATAGGTGTGTGTTGGATCCTTCAAAAGTAGTGCATTTTGGTGGATAAGTCAGAGGTGCAACAACATTTTTGGAAAGTCCGAGCAACATAGTTTGTACTTACTGAGACTGCTCTACTCTTAGACAGATGATAATCTATTTAGAGTAGAACTGACATATTAAGTTTGTTACTGTCTTTAAAGAGACAAGAATACTCACTTGATGTTGACCTGAGGATATTCCAAACGAGAGCACTTTACTCCCGCTTATGTGCGGCTCCAGGGAAAGCCAGACCATAAGGGTCTTTTGTATGCCATCTTACCCTGCATTTATGCAAGAGGTTGTTTCCACAGCTTGAACCCGTGACCTCCCGGTCACATGTCAACAACTTTACAAGTTACGCCAAGGCTCATGATAATTGTTTAAAATAGGAAACTGAATGCTGTTTTTAAATAGTTAATATGTTGTATGTATAATCTAAGAGCAGCTTGTTTTCTAGGGCCACACAAAAGATGAAAGCCATGGATGGGACCCTGCTGAAAGCAAGCAGAATATACCCTGATTGCTCAGCTATGGTGAATACACTACGTGCCATGATGTATAATGCTGAAGAACAGCTTCGATCACAAAGGGATCATACTTCCTTCCTCGTACAGCTCGCTGCAAGAACTACACCAAAAGGCCTTCATTGCCTTTCCATGCGGTTGACCACAGAATATTTTGATCTGCAGCCTGAGGAGCGGGAGTTTCCTAACCAACACAAACTGCAGGATCCCAATCTCTATCACTTTGCTGTTTTCTCAGACAATGTTTTGGCATGTTCTGTGGTTGTCAATTCAACTGTTTCAA-CCGCTAAGGTATGCGATCTGTGTGTTTTCTCATTTGGGATCACATTTCTTTCTTGAATACGATTCCTCCATGTGCTTTACGTCATTAATGCTACGTTCATACACCAAGGGTTCCAAGAAGCAAGTAAATCTAGGTGGTTCTGAAGAAGATACTAATCAAATCCCTTAACTGAGAGATTGGTTCTGATTTCTGCCATCTTGTAACTTGATAAGCACTGGAATGTTGAACACTAAGCTTACTGAGTATTTGATTTTATGATATATCCAACATTAATTTTAGGACAACTGGACAAAATGGATGGCCTGCAGAGGAAAAACACTTGTTTTTCATGTTTAGTTAACAATATTCATCTTCATTTTCTTAACGGAGCTGTAGGAAAGAATCTTTGGCCTGATTTTGGAAGTGACTAATTCTAGTTCATGTACAAAAATAACTTACTATTAGGAAATAAGTTGATATTACTCGGTCGTCCTCAAATCTGCAAATACATTTTTAAGACTATTTGCTAGTAATACTGTAGTTTCATCAGCTTATATGCAATAGGAATAAGGTAAGCAGAGGAAGTTTGACTAGTTTTCTTGGTACATGTATAGCAAATAGTAACTGCTAATTTGAAATTTTGAATTTGAAAACTAAATCATCACAAATATGTCTTTATTGAAGGTAAATGTTTATGTACTTGGCAGGATCCAGAGAAAATTGTCTTCCATATAGTGACTGATTCTCTCAA-CCTG-CCAGCGATG-TCGATGTGGTTCTTGATG-AATCCT-CCTGGAA</genome_strand>
        <mrna_strand>GTGGACAAGAAAAAAATCAACGAAATCTATCTGAGCAGAAAGTGTCCCCATCTAGAGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGTCCAAACCAGAAGGGGTTCAACACAGTCGAAGCATACAGTCACATCTGCGAAGGCCATTAGATGAGAAGGTAAAAGAGATGAAAGATAAGGTGATAAGGGCCAAAGCGTACTTGAGTTTTGCACCACCAGATAGCACCTCTCATTTTGTGAAAGAGATAAAGCTACGAATTAAAGAGCTAGAACGAGCAATGGGTGACGTTACTAAAGATTCTGGTTTGTCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACACAAAAGATGAAAGCCATGGATGGGACCCTGCTGAAAGCAAGCAGAATATACCCTGATTGCTCAGCTATGGTGAATACACTACGTGCCATGATGTATAATGCTGAAGAACAGCTTCGATCACAAAGGGATCATACTTCCTTCCTCGTACAGCTCGCTGCAAGAACTACACCAAAAGGCCTTCATTGCCTTTCCATGCGGTTGACCACAGAATATTTTGATCTGCAGCCTGAGGAGCGGGAGTTTCCTAACCAACACAAACTGCAGGATCCCAATCTCTATCACTTTGCTGTTTTCTCAAACAATGTTTTGGCATGTTCTGTGGTTGTCAATTCAACTGTTTCAACCCGCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCAGAG-AAATTGTCTTCCATATAGTGACTGATTCTCTCAACCCTGCCCAGCGATGTTCGATGTGGTTCTTGAAGAAATCCTCCCTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343738" ref_strand="+" ref_description="SGN-U343738        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gcacgagaaattacattcatatttataagtataagtgtataacttatatcatttggtcatttggtgtatttcccaggaggaatcttcttcaaatttcaagtttcgacatcaatattttaattttcattataatcgtttgttcttatacaaacgtttggtaacttcgttccactctctaatcttatatttattttttgtatttattatttaacttgtaagttgttcttgttaagtttcgtattttataatttataattttatatcatggagtcttctaaaaaaagtggaagtaaaaaaggtctagtagaatcagtaaaaaaattagttaaaaaaactaacaaaggtgctagttcgtctaaatctaaaattcctcttgttagaataaatacagatgaatttacgcatgtgaatgaaactagtttttcccgtcccggtcctataaatattaattcagatagtccgactccccatgaactctatgaaagatattatggtattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="30510" stop="29435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30198" g_stop="29735" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="501" r_length="464" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-U343738" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30198" e_stop="29735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAACTTATATCATTTGGTCATTTGGTGTATTTCGGAGGAGGAATCTTCTTCAAATTTCAAGTTTCGACATCAATATTTTAATTTTCATTATAATAGTTTGTTCTTATACAAACGTTTGGTAACTTCGTTCCACTCTCTAATCTTATATTTATTTTTTGTATTTATTATTTAACTTGTAAGTTGTTCTTGTTAAGTTTCGTATTTTATAATTTATAATTTTATATCATGGAGTCTTCTAAAAAAAGTGGAAGTAAAAAAGGTCTAGTAGAATCAGTAAAAAAATTAGTTAAAAAAACTAACAAAGGTGCTAGTTCGTCTAAATCTAAAATTCCTCTTGTTAGAATAAATACAGATGAATTTACGCATGTGAATGAAACTAGTTTTTCCCGCCCCGGTCCTATAAATATTAATTCAGATAGTCCGACTCCCCATGAACTCTATGAAAGATATTATGGTATTAAT</genome_strand>
        <mrna_strand>TATAACTTATATCATTTGGTCATTTGGTGTATTTCCCAGGAGGAATCTTCTTCAAATTTCAAGTTTCGACATCAATATTTTAATTTTCATTATAATCGTTTGTTCTTATACAAACGTTTGGTAACTTCGTTCCACTCTCTAATCTTATATTTATTTTTTGTATTTATTATTTAACTTGTAAGTTGTTCTTGTTAAGTTTCGTATTTTATAATTTATAATTTTATATCATGGAGTCTTCTAAAAAAAGTGGAAGTAAAAAAGGTCTAGTAGAATCAGTAAAAAAATTAGTTAAAAAAACTAACAAAGGTGCTAGTTCGTCTAAATCTAAAATTCCTCTTGTTAGAATAAATACAGATGAATTTACGCATGTGAATGAAACTAGTTTTTCCCGTCCCGGTCCTATAAATATTAATTCAGATAGTCCGACTCCCCATGAACTCTATGAAAGATATTATGGTATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323062" ref_strand="+" ref_description="SGN-U323062        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | ABC transporter family protein | chr1:23473329-23474018 REVERSE | Aliases: F9N12.11, F9N12_11(evalue: 7e-100, score=361) genbank/nr: gi|15221728|ref|NP_176516.1| ABC transporter family protein [Arabidopsis thaliana] gi|25297215|pir||E96658 hypothetical protein F9N12.11 [imported] - Arabidopsis thaliana gi|12324363|gb|AAG52155.1| hypothetical protein; 38474-39163 [Arabidopsis thaliana](evalue: 5e-98, score=361)">
      <seq>gcacgagccggcaaccaactttgttctgagaaaatacttcattgctagctgtagctcgacggacggcggtaagcagaacggccggaggtgattccatttgctgtagaaaatcacaaaatccaagcaagattagaaagagcatcagcctcaaacaaggaagtactatatctactactaatcttggtccttcattcacttgagatgtctttgtgtagacctccacttcctcgacttctgctgaataacgtctcgtgtatgagaaatgctcaacaaattttgcgccacataaatgtttccctccatgatggtggtgcactggtactaacaggcaccaatggctctggtaaatccacattcttgcgcatgttggctggtttctcaaaaccatcagctggtgagatactctggaatggccatgacattactgattcaggtgtttttcaacagtacaaacttcaactcaattggctgtctcttaaggacgccatcaaagagaagttcacggtccttgacaatgttcaatggtttgaagttcttgaaggcaagcaagggaagtcgctgccagctttggaacttatggggcttggaagattagtaaacgataaagcacggatgctttctatgggtcaaaggaaaagggtacagctcgccagattgttagcaattgatcgacctatttggttgcttgatgaaccttcagtagcattggatgacgaaggtgtgaaattgctagagtatattattgcagagcacaggaaaaaaggtggtattgtcattgtcgccacccatctgcctattcagatcgaggatgcaatgtttttaaggttgccaccaaggttccctagaaggatgactttagtagacatgcttgatagaggcggcctcgactgatcattaagaagataaagagtccaatctaaagaagctctccaatgaattcaaaagggagctgttttctctttcattcttgatgattgcaagaatttctctatctttactttgttagctcctcctcaatttgcacttcactttgcccctaaaatgtgctgagaacacatgccctcattggtctaatggtatgaacggcaacattggatgtgtggattagacgaatgtcacgagtttgaattcgttgcagacaaaagcttgtaatttaagcagcaaggaggggtaagttcattatccatcgagtttcgaaccctgtcggccggcactcggggatttctagtttttttgtaaaagaatttttgtagataacaccttgcatcagattatcagatgttgcgtttctcttatacaacatcccaaatagctttattgtttgtatgctagtttgaaccacagaattcagtacttatttggcttttgtaacaactttggacattacaatataagataagtcttagctttgttttgtcagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41150" stop="45966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41443" g_stop="41559" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41560" i_stop="43654" i_length="2095">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43655" g_stop="44960" g_length="1306"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="1423" r_length="1306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44961" i_stop="45657" i_length="697">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45658" g_stop="45673" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1424" r_stop="1439" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-U323062" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41443" e_stop="41559"/>
          <exon e_start="43655" e_stop="44960"/>
          <exon e_start="45658" e_stop="45673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCTCCGGCAACCAACTTTGTTCTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAAGTTCGTCTTTTGTCATCTCCATTTCTGTATTTGCTTTTCTATTTATTTTGGGAATTTCAGCTTGTGATCATAACTTGTTGGATGAAATGCTTATGATGTGTGAGTATTAATGGACTTTCATTCTTACCTTGTTTTGTTATACCGTATCTGTTAGATTGAATTGAAAAACTTGAAAAATTGGAAGAACGATGATTGTTTGGATTTAGATGTGTAATTAAGGATTGTATGCTGAATGATTGTCATTGAATTTATTGGTATTGATTGCTTTTTGTTAAAATCCATGTACACTTTACACTCTCTAGAGGCCAACTTTGTTGTTGTTAATCCCAATGTTTCAGTTTATGTGAGGTGTTTGTGTGGGCACCAAGTTTTTATTTAAGAAAATTGGGTACTTTTGTGAAAGACTAAAAGGAAAAAACAGTGACATAAATTGGGATATAGGATCACAATTTGTATATGTTTAGTGCATTCCACTCAATGCTGTAGATTTTACTGAGGAGTTTTGAATCATTTGGAATGTTAAGGGAAAAGTGAGACCTCTTATTTCACTTTCGTTGGTCTAATTTCCATGCGAATGCTTCGATCATCGAGATAAATTACTTTTCCTGTTATGGTAGGAAGTTGGTGCATTCAGTTGCCATATTTTTGTCTAATGTAGAAGGTAAGTCTTACCTGTATTTTGTTATTCATGAATTAATGTCGCTATACACACTTTTTTCCAAGAGAGGGAAGTGATGTTAAATTAATTCCAGGTATTTTTTTGCAAAAAGAACTTTCAAATGCCATAAGTGCAGACTGCAATTTTATCTTCCCAAATGTCATTCAGTTGGCTAGTGTGCTAACTTGATTGTTCTGGTAATATGTTTTGATTATTAAGAGAAGTATTAAAGGATCATTTGGACCAAGTACGGAATGGAAAACAAGCTCTCTAAACTACTAGGACTATCTAATTCATTCATGTCTTTTTTGAAGTACAGTCTGTGAATCTAAGATTTTCTTTCACTTTATATAACAAAAATTATATGTTAGCCTCAATTGAAGAGGAAATGACTAAGTCTAATTCTGCTAAGAGGGGTCTCTCTATTTTCATGAAGTTCTGAGATTTTCTGATGTGAGCCTTTGACTTTAGATTCCAAGAATTTGTATCCTAGTCTCAGTAGTTAAAAAAAGAAAGAATTAGTATCTTTTAGTCTCAGTAGAAGAGGAGTATGATTGCTCAGTTTCTCCTTTTCTTGGTTTTTTGTTTCTTCTTAAATCTTTCAAATCTAATGCTTCAAAGAATGATTCTTGTGGAACTAAATTTTCTTGTAAAAGTTGTTCATTCAACTTAATGACTTTTCTACCGATGCCATGTTAGAGTGTAACTGCTGTCAAGTTTCAAGTCGGTTAACTGTGTCTTACTTTGCGTGGTATCTGCACATTGCGGGACACGTTTATCGATTGTAATCTGATGAGAAAAATATGATTAGAGGCCTCCTTTCCTTTACCTTGTTTTCTGTGATACACACGAGCTACATTTAATAAAATATTGCAATTCTTGATGGTCCTTCTTGTTTAAGGGGAGAACTAGAAATGAGAATGATGTGGATTTCCCTTGCCTAAGAAATAAACTTTTTATATGATTTTGGTTGTTCAAGGGATAGGGGAGCTATGAGGAGGATGTGGAGCAAAGCTTTTTTCGGTTTCTCTAAATGTGCTTCTATGAAAAGAAATTCCATATGAGGGAAATTCAGTGACCTAGTAGCATTATAGAGTGTTACACATAGAAAACGAGTGAGAAATATCATGGAAGTCTTTCCTCTTTCCTCCTCTTCATTTTTCCTTTTCTGTTTTGGTTCTTCATAGTTTGTATAAAACATATGAGTAGATTTGATTGTGCTGCTTTCATGCCTGATTCGGAGTTCCAAATGATGTTATTTATGTGTTTAACCAATTGCTCATAATGCTTTTGTATCAGCAAGTAAACTTTGATTTGGCACAATTTGTTTCTATTTTGAACTGACTGGATACATTCAGTCACTGAAACTTGTGAATTTTTTCTACTTTTGCTTTTAATTTATCAGATTGCATAATATCTCTTGTAATTTCTTCTCAGATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGAACCTTCAGTAGCATTGGATGACGAAGGTGTGAAATTGCTAGAGTATATTATTGCAGAGCACAGGAAAAAAGGTGGTATTGTCATTGTCGCCACCCATCTGCCTATTCAGATCGAGGATGCAATGTTTTTAAGGTTGCCACCAAGGTTCCCTAGAAGGATGACTTTAGTAGACATGCTTGATAGAGGCGGCCTCGACTGATCATTAAGAAGATAAAGAGTCCAATCTAAAGAAGCTCTCCAATGAATTCAAAAGGGAGCTGTTTTCTCTTTCATTCTTGATGATTGCAAGAATTTCTCTATCTTTACTTTGTTAGCTCCTCCTCAATTTGCACTTCACTTTGCCCCTAAAATGTGCTGAGAACACATGCCCTCATTGGTCTAATGGTATGAACGGCAACATTGGATGTGTGGATTAGACGAATGTCACGAGTTTGAATTCGTTGCAGACAAAAGCTTGTAATTTAAGCAGCAAGGAGGGGTAAGTTCATTATCCATCGAGTTTCGAACCCTGTCGGCCGGCACTCGGGGATTTCTAGTTTTTTTGTAAAAGAATTTTTGTAGATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGGACATTACAATATAAGATAAGTCTTAGCTTTGTTTTGTCAGCAAATTGTGGGTACGATTGGATTAGTATTTTTTTTTTTTGGTTGAAAGTTTAATTTCCGATTTTTCACTTCCTATCTACATTTTGAATATATAAAACTTTGAAGTATTTATTCTTGATGCAATTATCGAACAAGCGTGATAGTTACCTACATAGTCTAATTCATGATTGCAACATTACAATTACATAACAAGCACATGTTAGTGAGATATAAATTTAAATTAGTTATTTTTTTTATACTTCAAAATTTAAAAATATACGAGGAGAGAACGAAATTCATGTCATAAATGAATAATTTGGAGTTCATATTCATCTATTTATATATGAAAAAAAGCCCCTATCAACACATGTATTCGACAACTTAATTCATATTCGATTAAAAAATGGATCAATAATGCACTACTCCGTGACGTTTTATATTGCTCCATCTAGTTAATTTTATGAGCATTTTAATGCCAGAAAATAAGTTGATTGCATTTTTGGTTCAATAAAATTGAAATGATAGAAGTACATTTTTTTTATAGCCAAATTTAATAGATTAACTATTTTTAAGTTTTTAAAAAAATCTTCTTCCATTTTAGAAAAATCACGTGGTCACCATGTGCTCAACACTAAATCCACAAGATCTCTGTGAGTGGTTCAATTTTCTTTTCAAAAATATAAGTTTTCTGGGATTTTAGTTTTATATCTGCAAAAAAAAAAAAAACAAAAAAAAAAA</genome_strand>
        <mrna_strand>GCACGAGCCGGCAACCAACTTTGTTCTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGAACCTTCAGTAGCATTGGATGACGAAGGTGTGAAATTGCTAGAGTATATTATTGCAGAGCACAGGAAAAAAGGTGGTATTGTCATTGTCGCCACCCATCTGCCTATTCAGATCGAGGATGCAATGTTTTTAAGGTTGCCACCAAGGTTCCCTAGAAGGATGACTTTAGTAGACATGCTTGATAGAGGCGGCCTCGACTGATCATTAAGAAGATAAAGAGTCCAATCTAAAGAAGCTCTCCAATGAATTCAAAAGGGAGCTGTTTTCTCTTTCATTCTTGATGATTGCAAGAATTTCTCTATCTTTACTTTGTTAGCTCCTCCTCAATTTGCACTTCACTTTGCCCCTAAAATGTGCTGAGAACACATGCCCTCATTGGTCTAATGGTATGAACGGCAACATTGGATGTGTGGATTAGACGAATGTCACGAGTTTGAATTCGTTGCAGACAAAAGCTTGTAATTTAAGCAGCAAGGAGGGGTAAGTTCATTATCCATCGAGTTTCGAACCCTGTCGGCCGGCACTCGGGGATTTCTAGTTTTTTTGTAAAAGAATTTTTGTAGATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGGACATTACAATATAAGATAAGTCTTAGCTTTGTTTTGTCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U337759" ref_strand="-" ref_description="SGN-U337759        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gtaaaagaatttttgtatataacaccttgcatcagattatcagatgttgcgtttctcttatacaacatcccaaatagctttattgtttgtatgctagtttgaaccacagaattcagtacttatttggcttttgtaacaactttgtacattgcgatataagataagtcttaaaaattctcccgtcagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44473" stop="45965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44773" g_stop="44942" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44943" i_stop="45536" i_length="594">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45537" g_stop="45548" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="182" r_length="12" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45549" i_stop="45642" i_length="94">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45643" g_stop="45664" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="204" r_length="22" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-U337759" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337759" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44773" e_stop="44942"/>
          <exon e_start="45537" e_stop="45548"/>
          <exon e_start="45643" e_stop="45664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAGAATTTTTGTAGATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGGACATTACAATATAAGATAAGTCTTAGCTTTGTTTTGTCAGCAAATTGTGGGTACGATTGGATTAGTATTTTTTTTTTTTGGTTGAAAGTTTAATTTCCGATTTTTCACTTCCTATCTACATTTTGAATATATAAAACTTTGAAGTATTTATTCTTGATGCAATTATCGAACAAGCGTGATAGTTACCTACATAGTCTAATTCATGATTGCAACATTACAATTACATAACAAGCACATGTTAGTGAGATATAAATTTAAATTAGTTATTTTTTTTATACTTCAAAATTTAAAAATATACGAGGAGAGAACGAAATTCATGTCATAAATGAATAATTTGGAGTTCATATTCATCTATTTATATATGAAAAAAAGCCCCTATCAACACATGTATTCGACAACTTAATTCATATTCGATTAAAAAATGGATCAATAATGCACTACTCCGTGACGTTTTATATTGCTCCATCTAGTTAATTTTATGAGCATTTTAATGCCAGAAAATAAGTTGATTGCATTTTTGGTTCAATAAAATTGAAATGATAGAAGTACATTTTTTTTATAGCCAAATTTAATAGATTAACTATTTTTAAGTTTTTAAAAAAATCTTCTTCCATTTTAGAAAAATCACGTGGTCACCATGTGCTCAACACTAAATCCACAAGATCTCTGTGAGTGGTTCAATTTTCTTTTCAAAAATATAAGTTTTCTGGGATTTTAGTTTTATATCTGCAAAAAAAAAAAAAACAA</genome_strand>
        <mrna_strand>GTAAAAGAATTTTTGTATATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGTACATTGCGATATAAGATAAGTCTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTCTCCCG..............................................................................................TCAGCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339709" ref_strand="+" ref_description="SGN-U339709        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:15098073-15100564 FORWARD | Aliases: None(evalue: 2e-19, score=93.2) genbank/nr: gi|18417714|ref|NP_567863.1| expressed protein [Arabidopsis thaliana] gi|26453191|dbj|BAC43670.1| unknown protein [Arabidopsis thaliana](evalue: 2e-17, score=93.2)">
      <seq>tgggttttattgaaaaatgatgaagaaatcatgggtttgtactttgattactcaattttgtttatgtttgtctctttttcttgttcttaacttgtgtcaaaatcagaagccaatgataaggaatggaaatgtgaatgatcttcccatggatatatattttataagtgttacagggggtattagaactcttgaagagcagacccttcttctcaaacaggtggagaaggtagcaaaaaagttcaatgcaagattcgctatcaacataagcgaacttggggaagatgatcctcttatgcaaaatgctacttggcgttttccttccgtgaagatcccctggtactctactcgagctctcgaaggacaaggggtgaatcactaccttaaacaattcaaatttgcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="45382" stop="48131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45682" g_stop="45898" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45899" i_stop="47006" i_length="1108">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47007" g_stop="47090" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="301" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47091" i_stop="47604" i_length="514">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.700" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47605" g_stop="47639" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="336" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47640" i_stop="47763" i_length="124">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47764" g_stop="47831" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="404" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-U339709" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45682" e_stop="45898"/>
          <exon e_start="47007" e_stop="47090"/>
          <exon e_start="47605" e_stop="47639"/>
          <exon e_start="47764" e_stop="47831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTTTTATTGAAAAATGATGAAGAAATCATGGGTTTGTACTTTGATTACTCAATTTTGTTTATGTTTGTCTCTTTTTCTTGTTCTTAACTTGTGTCAAAATCAGAAGCCAATGATAAGGAATGGAAATGTGAATGATCTTCCCATGGATATATATTTTATAAGTGTTACAGGGGGTATTAGAACTCTTGAAGAGCAGACCCTTCTTCTCAAACAGGTCAGTTTTTCAACCAATCTTTAAAAAATAGTTTTTTTTTGGGCTATTTGTGTAAAGGAATGATTTTTATTTGAATGTTACTTGTTGGGGTATGGAATCTTGAAATGTATTTTGGTTTGGTGAAGATTGTCAGTGTTAGTTCAGTCTGTAGTTGAAGAATGTACACTTAACAATCAATCTTGAAAAGAAAATCTATTGTTATTTGTGTAAAGGAATGATTTTTATTTGAATCTATGTTGATGCAATATGTGTTTTGAGCTGAATTTTGGTTTGGTGAAGATTGTAAGTTAGTTCAGTCTTTAGTTAGAGACCTATGCAACTCTGGATTTCTTTTCTTTTGGCATTAGTTATTGAGTTTGCTACACTTGAGCTGAGGGTCTTTCGGAAATAGTCTCTCTCTTTCTCCACGAGGTAGCGGTAAGGTCAGAGTACACCCTACCATCCCCAGACCCCACTTGTGGAATTCCACTGGATATGTTATTGTTAGCATTAGTTGATTGAGGGAAGGTAATCAGTTTCAGTGTATAGTTTGGAGGTGTACTCATTCAAGATTGGATCATATTCAAAATGATTAAAACATTTGTTAGAAGGTGCAAGTAGCACATGTTGATAGAATGAGAGAAAGTCGCTTGAAATGGTTTAGGTTTAGTTATGCATCTACCTCCTATGTGTGGGTCAGTAGGTGTGAAATTATGGCGAGTGAAGGTGTTAAAAAGGAAGAGTTAGATATAAAGTCACATGGAAGAAAGTAGTACGGAAAGACCTACAGTCTCTTGGCATCCATGTAGACTTAGAGAAAAATATGAGAAAATGGAAGAAAAGATCTATAAGCAATACCAGATAACTGGAAATATGTTTTGGACATGCTAGTACTGTTCCTTTAGCTCCCGTGTGTTTAGGAGTCTTTCCAAATCTTTGCATTGTTCTGGTAATTAGTTTTGTAAAAACTTGAAATTCAATAAATTCATGTTCTTGTGACAAAAGACGTCCTTCCTTTCTTTTGTTTTGATGTTCAAATGAAATTGTTACCTGTGATGAAATTCATCTCCTTTCTATCATGTTCATTTTTGGCTGATCAAGTTTTGGTGGAATCTGATATTCCATGAAGGTGGAGAAGGTAGCAAAAAAGTTCAATGCAAGATTCGTTATCAACATAAGCGAACTTGGGGAAGATGATCCTCTTATGCAAAATGTAAGCCCTCCAATGACTTATATGTGCATAATTCAGTGGTTATATGAATTTGAGCAATGATGCTAGTGTAGGATGTAACACGTAGCTACTTAATGAATTGTGTTCAAATTAGATAATTTACCAAGTTTTGATCACCTACTAACCAACCAATGTTTGATTTTGATTCATATTTTCAAGATACCTAAAGTTCTAAAGACATCTCGTTTTTTGTGTTCTACGGATTACATCTTGCTGCAACAATTGGGTACTGATTGTATCACTCTGGCTTCAGAAGAGTTGTTTAAACCATGCAATTTTGACATTATGTAGCACATTAACTTGTCAACTTCTCTTCTTGTGCAAAAGATGTTTGGCTTGTGAACGTGCTAATCTTTCATGTGGCAAGCTCCATGTAGTATTTACTACAAAAACACGTTAACTACTTTCTTTGATTAAAAGGAATCAATCTTAAATTTCCAATGAGGATTCGACGAAATGATAAATCGTAAATATCTAATGGTCTCTTCCTTGGCAGGCTACTTGGCGTTTTCCTTCCGTGAAGATCCCCTGGTATTCTCCTCTATGAATAAGCAGTTTGTTCCTCTTGGAATAACTTTTTTACTTTTAGATCTCGGTTTCATCATTTGAAATGATTTGTCTTTGCGGTTTCCCTTCAGCCATCCTAAACTTGTAGGTACTCTACTCGAGCTCTCGAAGGACAAGGGGTGAATCACTACCTTAAACAATTCAAATTTGCACATG</genome_strand>
        <mrna_strand>TGGGTTTTATTGAAAAATGATGAAGAAATCATGGGTTTGTACTTTGATTACTCAATTTTGTTTATGTTTGTCTCTTTTTCTTGTTCTTAACTTGTGTCAAAATCAGAAGCCAATGATAAGGAATGGAAATGTGAATGATCTTCCCATGGATATATATTTTATAAGTGTTACAGGGGGTATTAGAACTCTTGAAGAGCAGACCCTTCTTCTCAAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAAGGTAGCAAAAAAGTTCAATGCAAGATTCGCTATCAACATAAGCGAACTTGGGGAAGATGATCCTCTTATGCAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACTTGGCGTTTTCCTTCCGTGAAGATCCCCTG............................................................................................................................GTACTCTACTCGAGCTCTCGAAGGACAAGGGGTGAATCACTACCTTAAACAATTCAAATTTGCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339708" ref_strand="+" ref_description="SGN-U339708        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:15098073-15100564 FORWARD | Aliases: None(evalue: 2e-15, score=77.8) genbank/nr: gi|18417714|ref|NP_567863.1| expressed protein [Arabidopsis thaliana] gi|26453191|dbj|BAC43670.1| unknown protein [Arabidopsis thaliana](evalue: 2e-13, score=77.8)">
      <seq>tgaagaaatcatggaagccaatgataaggaatggaaatgtgaatgatcttcccatggatatatattttataagtgttacagggggtattagaactcttgaagagcagacccttcttctcaaacaggtggagaaggtagcaaaaaagttcaatgcaagattcgttatcaacataagcgaacttggggaagatgatcctcttatgcaaaatgctacttggcgttttccttccgtgaagatcccctgccatcctaaacttgtaggtactctactcgagctctcgaaggacaaggggtgaatcactaccttaaacaattcaaatttgcacatggaagcttagatattatagttgtagatacaggattatatgaggtaaatgtttcttttttatctgattacttggccttttacgcacgttaccaagatggtgtcacttcagctttctgctcacttgattgtcacctatcgtctttgtaagatatatattgtatttttctatataatgttttacctaacccgctcctgataagtctgtagcttatgtgttggttttatctctggaagttcagaaaatttattccaaagacccttggttacatcaaatatgatggcatgtcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="45487" stop="48422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45702" g_stop="45715" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45716" i_stop="45787" i_length="72">
            <donor d_prob="0.774" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45788" g_stop="45898" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="125" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45899" i_stop="47006" i_length="1108">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47007" g_stop="47090" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="209" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47091" i_stop="47604" i_length="514">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.700" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47605" g_stop="47639" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="244" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47640" i_stop="47746" i_length="107">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.705" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47747" g_stop="48122" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="620" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-U339708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45702" e_stop="45715"/>
          <exon e_start="45788" e_stop="45898"/>
          <exon e_start="47007" e_stop="47090"/>
          <exon e_start="47605" e_stop="47639"/>
          <exon e_start="47747" e_stop="48122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAATCATGGGTTTGTACTTTGATTACTCAATTTTGTTTATGTTTGTCTCTTTTTCTTGTTCTTAACTTGTGTCAAAATCAGAAGCCAATGATAAGGAATGGAAATGTGAATGATCTTCCCATGGATATATATTTTATAAGTGTTACAGGGGGTATTAGAACTCTTGAAGAGCAGACCCTTCTTCTCAAACAGGTCAGTTTTTCAACCAATCTTTAAAAAATAGTTTTTTTTTGGGCTATTTGTGTAAAGGAATGATTTTTATTTGAATGTTACTTGTTGGGGTATGGAATCTTGAAATGTATTTTGGTTTGGTGAAGATTGTCAGTGTTAGTTCAGTCTGTAGTTGAAGAATGTACACTTAACAATCAATCTTGAAAAGAAAATCTATTGTTATTTGTGTAAAGGAATGATTTTTATTTGAATCTATGTTGATGCAATATGTGTTTTGAGCTGAATTTTGGTTTGGTGAAGATTGTAAGTTAGTTCAGTCTTTAGTTAGAGACCTATGCAACTCTGGATTTCTTTTCTTTTGGCATTAGTTATTGAGTTTGCTACACTTGAGCTGAGGGTCTTTCGGAAATAGTCTCTCTCTTTCTCCACGAGGTAGCGGTAAGGTCAGAGTACACCCTACCATCCCCAGACCCCACTTGTGGAATTCCACTGGATATGTTATTGTTAGCATTAGTTGATTGAGGGAAGGTAATCAGTTTCAGTGTATAGTTTGGAGGTGTACTCATTCAAGATTGGATCATATTCAAAATGATTAAAACATTTGTTAGAAGGTGCAAGTAGCACATGTTGATAGAATGAGAGAAAGTCGCTTGAAATGGTTTAGGTTTAGTTATGCATCTACCTCCTATGTGTGGGTCAGTAGGTGTGAAATTATGGCGAGTGAAGGTGTTAAAAAGGAAGAGTTAGATATAAAGTCACATGGAAGAAAGTAGTACGGAAAGACCTACAGTCTCTTGGCATCCATGTAGACTTAGAGAAAAATATGAGAAAATGGAAGAAAAGATCTATAAGCAATACCAGATAACTGGAAATATGTTTTGGACATGCTAGTACTGTTCCTTTAGCTCCCGTGTGTTTAGGAGTCTTTCCAAATCTTTGCATTGTTCTGGTAATTAGTTTTGTAAAAACTTGAAATTCAATAAATTCATGTTCTTGTGACAAAAGACGTCCTTCCTTTCTTTTGTTTTGATGTTCAAATGAAATTGTTACCTGTGATGAAATTCATCTCCTTTCTATCATGTTCATTTTTGGCTGATCAAGTTTTGGTGGAATCTGATATTCCATGAAGGTGGAGAAGGTAGCAAAAAAGTTCAATGCAAGATTCGTTATCAACATAAGCGAACTTGGGGAAGATGATCCTCTTATGCAAAATGTAAGCCCTCCAATGACTTATATGTGCATAATTCAGTGGTTATATGAATTTGAGCAATGATGCTAGTGTAGGATGTAACACGTAGCTACTTAATGAATTGTGTTCAAATTAGATAATTTACCAAGTTTTGATCACCTACTAACCAACCAATGTTTGATTTTGATTCATATTTTCAAGATACCTAAAGTTCTAAAGACATCTCGTTTTTTGTGTTCTACGGATTACATCTTGCTGCAACAATTGGGTACTGATTGTATCACTCTGGCTTCAGAAGAGTTGTTTAAACCATGCAATTTTGACATTATGTAGCACATTAACTTGTCAACTTCTCTTCTTGTGCAAAAGATGTTTGGCTTGTGAACGTGCTAATCTTTCATGTGGCAAGCTCCATGTAGTATTTACTACAAAAACACGTTAACTACTTTCTTTGATTAAAAGGAATCAATCTTAAATTTCCAATGAGGATTCGACGAAATGATAAATCGTAAATATCTAATGGTCTCTTCCTTGGCAGGCTACTTGGCGTTTTCCTTCCGTGAAGATCCCCTGGTATTCTCCTCTATGAATAAGCAGTTTGTTCCTCTTGGAATAACTTTTTTACTTTTAGATCTCGGTTTCATCATTTGAAATGATTTGTCTTTGCGGTTTCCCTTCAGCCATCCTAAACTTGTAGGTACTCTACTCGAGCTCTCGAAGGACAAGGGGTGAATCACTACCTTAAACAATTCAAATTTGCACATGGAAGCTTAGATATTATAGTTGTAGATACAGGATTATATGAGGTAAATGTTTCTTTTTTATCTGATTACTTGGCCTTTTACGCACGTTACCAAGATGGTGTCACTTCAGCTTTCTGCTCACTTGATTGTCACCTATCGTCTTTGTAAGATATATATTGTATTTTTCTATATAATGTTTTACCTAACCCGCTCCTGATAAGTCTGTAGCTTATGTGTTGGTTTTATCTCTGGAAGTTCAGAAAATTTATTCCAAAGACCCTTGGTTACATCAAATATGATGGCATGTCATTTG</genome_strand>
        <mrna_strand>TGAAGAAATCATGG........................................................................AAGCCAATGATAAGGAATGGAAATGTGAATGATCTTCCCATGGATATATATTTTATAAGTGTTACAGGGGGTATTAGAACTCTTGAAGAGCAGACCCTTCTTCTCAAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAAGGTAGCAAAAAAGTTCAATGCAAGATTCGTTATCAACATAAGCGAACTTGGGGAAGATGATCCTCTTATGCAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACTTGGCGTTTTCCTTCCGTGAAGATCCCCTG...........................................................................................................CCATCCTAAACTTGTAGGTACTCTACTCGAGCTCTCGAAGGACAAGGGGTGAATCACTACCTTAAACAATTCAAATTTGCACATGGAAGCTTAGATATTATAGTTGTAGATACAGGATTATATGAGGTAAATGTTTCTTTTTTATCTGATTACTTGGCCTTTTACGCACGTTACCAAGATGGTGTCACTTCAGCTTTCTGCTCACTTGATTGTCACCTATCGTCTTTGTAAGATATATATTGTATTTTTCTATATAATGTTTTACCTAACCCGCTCCTGATAAGTCTGTAGCTTATGTGTTGGTTTTATCTCTGGAAGTTCAGAAAATTTATTCCAAAGACCCTTGGTTACATCAAATATGATGGCATGTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328901" ref_strand="+" ref_description="SGN-U328901        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:15098073-15100564 FORWARD | Aliases: None(evalue: 5e-08, score=55.1) genbank/nr: unknown(evalue: 1e-08, score=63.2)">
      <seq>tcggcacgaggatgaggttgcttcaaatggtgctggagatagtcagtcacaatggctgatagacacacttgaaaacagtgaaagcaaatggtgcattgctgttggatttcatccattggtagtttgcgaagaagatgctcctcaaacaaaactaaaacacaaattccagtctttacatggcctatttctgaagtatggtgtggatgcatatatcagtgcccctgtttgtgctgacaatgttgaggaaagacatattgcaaaatccaaaactagtattggcagatataaaggacctttgctgactaaagtgaatcagaacttgccttgctctatgggaagagtagatggattcctacttcacaaagccagtgctttagagattgtttcctatttagtcaccttggaaggtgatgttgtgcagaaattttttctccatcaaagaggcaaagatgttatgtagatattcctaaagcttcaaacatcatttaggggagccatttgcttcagatcgccttttttcgttctagttgtcgtcgtggaaaagaatgaaagaagatcatagatttaattaaatattagtgaagaatcgtaattctcgtcttcgttctcttttttttttccctttgcagagtaagggaaaatgaattacgaaagaagcagattcagtactgtgctcaagtttgaactaatagattcaacgtttatactcaagttgaaattcacatcttttgtacgatactgatgttcattttgaatatcactggatcctttccaaattttattgagatgtttatgctaatagagcgaatgtgttattctatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="48478" stop="50624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48780" g_stop="48853" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="90" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48854" i_stop="48940" i_length="87">
            <donor d_prob="0.409" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48941" g_stop="49052" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="202" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49053" i_stop="49406" i_length="354">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49407" g_stop="49537" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="333" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49538" i_stop="49744" i_length="207">
            <donor d_prob="0.134" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49745" g_stop="49793" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="382" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49794" i_stop="49880" i_length="87">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49881" g_stop="50324" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="826" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-U328901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48780" e_stop="48853"/>
          <exon e_start="48941" e_stop="49052"/>
          <exon e_start="49407" e_stop="49537"/>
          <exon e_start="49745" e_stop="49793"/>
          <exon e_start="49881" e_stop="50324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTTCAAATGGTGCTGGAGATAGTCAGTCACAATGGCTGATAGACACACTTGAAAACAGTGAAAGCAAATGGTACCTTCAGATTGCAATCTTTTACTCCAGAGAGAAAATATGTGACAGAAGTGATATCGTCTGACTAAAGTGATAGTGTAAATGCAGGTGCATTGCTGTTGGATTTCATCCATTGGTAGTTTGCGAAGAAGATGCTCCTCAAACAAAACTAAAACACAAATTCCAGTCTTTACATGGCCTATTTCTGAAGTATGGTGTGGTAAAGTCAAAATCTTAAACCTACATCTCCATTTCTTCAGTAATACCTTAACACCAGATACCATTTTTTCTGCAAAACCAGCTTTCTATATCTTAAATTTGATGACTTATAGCCCCCAAGGCTTTGGCGTAGTGGTAGAGCGCGGCACGTGATGTGTGGGTTGGGCGCACATCATTGGTTCGAATGTTGTTGTAGACTAAAAACTTGATACATAAGTGGAAAAGGATAGACGGATAGGACCATTATCCACCAAGTTTCAAACCGTGTGCTGTTAATCCTAGAGAATTTTCTCGAATCTGAAAACGAAGATTTTTTACTGACATATGTTGTTTTTGTTTTGCTTTTCCTGTTTAGGATGCATATATCAGTGCCCCTGTTTGTGCTGACAATGTTGAGGAAAGACATATTGCAAAATCCAAAACTAGTATTGGCAGATATAAAGGACCTTTGCTGACTAAAGTGAATCAGAACTTGCCTTGCTCTATGTAAGTAGTTTTACTTGAACATCAGTAGACTTTTGAGATTACATTGATCGGAACCTTCAAAAATGCTGCCCCACCCATGTTGGATCCTCCAAAAACGTATTACTGTCAGAGGATCCAACACATATCCAACAACATTTTTGAAGGATCCGAACAATATAGGACTCATCAAGCAAACACTTTACGACTATCATTTTTCATTTTTTTTAGGGGAAGAGTAGATGGATTCCTACTTCACAAAGCCAGTGCTTTAGAGATTGTGAGTGTTATTAAATTTTGCCTAATATTATACACAAGCCTCTTATATTATGTTCTTGATATTTTTAACAATTATTATTTCTAACAGGTTTCCTATTTAGTCACCTTGGAAGGTGATGTTGTGCAGAAATTTTTTCTCCATCAAAGAGGCAAAGATGTTATGTAGATATTCCTAAAGCTTCAAACATCATTTAGGGGAGCCATTTGCTTCAGATCGCCTTTTTTCGTTCTAGTTGTCGTCGTGGAAAAGAATGAAAGAAGATCATAGATTTAATTAAATATTAGTGAAGAATCGTAATTCTCGTCTTCGTTCTCTTTTTTTTTTCCCTTTGCAGAGTAAGGGAAAATGAATTACGAAAGAAGCAGATTCAGTACTGTGCTCAAGTTTGAACTAATAGATTCAACGTTTATACTCAAGTTGAAATTCACATCTTTTGTACGATACTGATGTTCATTTTGAATATCACTGGATCCTTTCCAAATTTTATTGAGATGTTTATGCTAATAGAGCGAATGTGTTATTCTATATTAT</genome_strand>
        <mrna_strand>GTTGCTTCAAATGGTGCTGGAGATAGTCAGTCACAATGGCTGATAGACACACTTGAAAACAGTGAAAGCAAATG.......................................................................................GTGCATTGCTGTTGGATTTCATCCATTGGTAGTTTGCGAAGAAGATGCTCCTCAAACAAAACTAAAACACAAATTCCAGTCTTTACATGGCCTATTTCTGAAGTATGGTGTG..................................................................................................................................................................................................................................................................................................................................................................GATGCATATATCAGTGCCCCTGTTTGTGCTGACAATGTTGAGGAAAGACATATTGCAAAATCCAAAACTAGTATTGGCAGATATAAAGGACCTTTGCTGACTAAAGTGAATCAGAACTTGCCTTGCTCTAT...............................................................................................................................................................................................................GGGAAGAGTAGATGGATTCCTACTTCACAAAGCCAGTGCTTTAGAGATT.......................................................................................GTTTCCTATTTAGTCACCTTGGAAGGTGATGTTGTGCAGAAATTTTTTCTCCATCAAAGAGGCAAAGATGTTATGTAGATATTCCTAAAGCTTCAAACATCATTTAGGGGAGCCATTTGCTTCAGATCGCCTTTTTTCGTTCTAGTTGTCGTCGTGGAAAAGAATGAAAGAAGATCATAGATTTAATTAAATATTAGTGAAGAATCGTAATTCTCGTCTTCGTTCTCTTTTTTTTTTCCCTTTGCAGAGTAAGGGAAAATGAATTACGAAAGAAGCAGATTCAGTACTGTGCTCAAGTTTGAACTAATAGATTCAACGTTTATACTCAAGTTGAAATTCACATCTTTTGTACGATACTGATGTTCATTTTGAATATCACTGGATCCTTTCCAAATTTTATTGAGATGTTTATGCTAATAGAGCGAATGTGTTATTCTATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327646" ref_strand="+" ref_description="SGN-U327646        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: hAT(evalue: 8e-28, score=126)">
      <seq>agaatgtgataagatgttgtctttagatgtgcctactaggtggaattccacctatttgatgttagacacagcagaaaagtttgagaaggcttttgagaggtttgatctttatgatggtaattttcattcttttcttgctactgatgtttgtgaagatggaagtatcgcagggtcaattcaatatgaagattgggctaatgtgaggaatgtcacaaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgaccttgatttgagtaaaatggctttgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagcagaggcttacttgagggatttgtttgcgatatatgtaagtaagtatggaaaaggttccaaaagtcaaccatcttcatctgactcatctgattcttctggtagtggtatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54284" stop="53043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53984" g_stop="53343" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-U327646" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53984" e_stop="53343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAACTCCACCTATTTGATGTTAGACACAGCGGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTAAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAGGGATTTGTTTACGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGGTAGTGGCATTTC</genome_strand>
        <mrna_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTCATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTTGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGCAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGGTAGTGGTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333048" ref_strand="+" ref_description="SGN-U333048        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>atgtgtatgtgtaagagtgagtctcttttttcagataaagcagcagcaaaagcattgaaaagggacagttagtgaacttacagggtctctgtttaaattgtctcttataaatcagagtattctaggggaattagtagcttagtaggatggttggcttatgaatacctggactttcaccttgttggtgagggttcaattctccaccttgtaatcccctccccctttccgcttcggcccagttttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="69532" stop="70398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69832" g_stop="70096" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-U333048" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69832" e_stop="70096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTATGTGTGAGAGTGTGTCTCTTTTTTCAGATAAAGCAGCAGCAAAAGCATTGAAAAGGGACAGTTAGTGGACTTACAGGGTCTCTGTTTAAATTGTCTCTTATAAATCAGAGTATTCTAGGGGAATTAGTAGCTTAGTAGGATGGTTGGCTTATGAATACCTGGACTTTCACCTTGTTGGTGAGGGTTCAATTCTCCACCTTGTAATCCCCTCCCCCTTTCCGCTTCGGCCCAGTTTTTTCAAAAAAAATAAAATAAAAT</genome_strand>
        <mrna_strand>ATGTGTATGTGTAAGAGTGAGTCTCTTTTTTCAGATAAAGCAGCAGCAAAAGCATTGAAAAGGGACAGTTAGTGAACTTACAGGGTCTCTGTTTAAATTGTCTCTTATAAATCAGAGTATTCTAGGGGAATTAGTAGCTTAGTAGGATGGTTGGCTTATGAATACCTGGACTTTCACCTTGTTGGTGAGGGTTCAATTCTCCACCTTGTAATCCCCTCCCCCTTTCCGCTTCGGCCCAGTTTTTTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321546" ref_strand="+" ref_description="SGN-U321546        Tomato 200607 #1 [9 ESTs aligned]">
      <seq>taattcaccctagtttactgcattgagaaaacctgaaccgtatcttggcagggcgactaggtatggcatcatttgcaaactggtgtctgcagccatggcgttgtccttttctctttgcatgttcatgcacaacaaaatataagtcctaaagtctgtggttaatatctcaaaaggtcactcaactgatggggattggcatggcagctttaaggctccgtgagatatgggaactatcttactggactattaatgcttgcagccatgcgcccatgtccattgtttagctttttgaatgacaaaaggcaaatctgagcctccaagtatatctctgtgttcagtaaatgaggcattttattgaactcgagaaaggtagtgattttctgagggtggttattctcttttctcttaagttcaatttagccaatgaagtttcctatgcttttgttagacagatatagtttaacagccctctcatcagcaaaatgttcttgatgatgacgatgattgccatggttatgataataataatattaataataagcaaaattacgtttcccccctcaacttttctagaaaaacccaaatcctcaaccctaaactttgtgatgaggctgtgatgatattctccaggaagtttgaaaatcagatttttaagctgattcatatcttggctaggcaaaggcaggggaattcatgaggctggttcttacgtgctctgtcacacgtatctgctttttgcagccatggtgaagtagccctttttttctgattgattttcactcaaaatctgagcctcttttctgtttaaagttttggttctacaatatgtagtctttttttttcatccttcgtactatcagcacatataggaagagtcccctttgagaaatgaaacttcctatgtatccctctatacaatttccatagattgttaggtacactgagatgaaataagtccaaagggaatggaagtggatatttaggatccatataatgtctttaaacagtttgatattgaagctggtttttgctgcatttatctacactactcaaactttcatgcctttttagatcctgaatgcaccaagttttccaaggcaatgaagatgtcatattgaaaatgaaaatgtgaataagatgagagttgattcatggcctggcttggccaaagtcaattggaaggtcttgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76812" stop="78603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77112" g_stop="78303" g_length="1192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1192" r_length="1192" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-U321546" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1192</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77112" e_stop="78303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAGGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCTTTTGTTAGACAGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATGACGATGATTGCCATGGTTATGATAATAATAATATTAATAATAAGCAAAATTACGTTTCCCCCCTCAACTTTTCTAGAAAAACCCAAATCCTCAACCCTAAACTTTGTGATGAGGCTGTGATGATATTCTCCAGGAAGTTTGAAAATCAGATTTTTAAGCTGATTCATATCTTGGCTAGGCAAAGGCAGGGGAATTCATGAGGCTGGTTCTTACGTGCTCTGTCACACGTATCTGCTTTTTGCAGCCATGGTGAAGTAGCCCTTTTTTTCTGATTGATTTTCACTCAAAATCTGAGCCTCTTTTCTGTTTAAAGTTTTGGTTCTACAATATGTAGTCTTTTTTTTTCATCCTTCGTACTATCAGCACATATAGGAAGAGTCCCCTTTGAGAAATGAAACTTCCTATGTATCCCTCTATACAATTTCCATAGATTGTTAGGTACACTGAGATGAAATAAGTCCAAAGGGAATGGAAGTGGATATTTAGGATCCATATAATGTCTTTAAACAGTTTGATATTGAAGCTGGTTTTTGCTGCATTTATCTACACTACTCAAACTTTCATGCCTTTTTAGATCCTGAATGCACCAAGTTTTCCAAGGCAATGAAGATGTCATATTGAAAATGAAAATGTGAATAAGATGAGAGTTGATTCATGGCCTGGCTTGGCCAAGTCCAATTGGAAGGTCTTGTAAG</genome_strand>
        <mrna_strand>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAGGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCTTTTGTTAGACAGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATGACGATGATTGCCATGGTTATGATAATAATAATATTAATAATAAGCAAAATTACGTTTCCCCCCTCAACTTTTCTAGAAAAACCCAAATCCTCAACCCTAAACTTTGTGATGAGGCTGTGATGATATTCTCCAGGAAGTTTGAAAATCAGATTTTTAAGCTGATTCATATCTTGGCTAGGCAAAGGCAGGGGAATTCATGAGGCTGGTTCTTACGTGCTCTGTCACACGTATCTGCTTTTTGCAGCCATGGTGAAGTAGCCCTTTTTTTCTGATTGATTTTCACTCAAAATCTGAGCCTCTTTTCTGTTTAAAGTTTTGGTTCTACAATATGTAGTCTTTTTTTTTCATCCTTCGTACTATCAGCACATATAGGAAGAGTCCCCTTTGAGAAATGAAACTTCCTATGTATCCCTCTATACAATTTCCATAGATTGTTAGGTACACTGAGATGAAATAAGTCCAAAGGGAATGGAAGTGGATATTTAGGATCCATATAATGTCTTTAAACAGTTTGATATTGAAGCTGGTTTTTGCTGCATTTATCTACACTACTCAAACTTTCATGCCTTTTTAGATCCTGAATGCACCAAGTTTTCCAAGGCAATGAAGATGTCATATTGAAAATGAAAATGTGAATAAGATGAGAGTTGATTCATGGCCTGGCTTGGCCAAAGTCAATTGGAAGGTCTTGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331586" ref_strand="+" ref_description="SGN-U331586        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>aggtgaatccgtacctaaacataagtatgtcagctaacagtccgttctacagttcttgtcgcgtctggcattcttttcaggtgaacaatgttgcatttcatctttgctgggtggcggaccggtgtcatttcaattgttggtggtactgatggtaaagattgctggctttggttgaatgaaaattggatccgccctcatgaaaagtacaaggaaaaaccagcttatattgaacctgaggatgaagtgtagacgccagtcggtgacagaagagaatgtagcttcaagaatgaggcaagcccacccacccctcgtgttgtcgctgagcattgccaggggccacaacgcctgtgtatcacattgcctcagcttccctactttgcatgagacctcaatgatgcaattctctggttctggctactgaagttctgagataatgctttgttctttaaaatgttagcatttgctatcaaatgcaccatgtttgtatttttcttacccaagaatgtttattaatatggacaatatttctgttgacaaattttgtgctttctttgacaccaaagttttcatttttatcctcttgtaattgcagcatcaaatttggaatattgtactatttgcatttgatagtatgttatatatactctatcgtttcaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="78248" stop="79753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78548" g_stop="78751" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78752" i_stop="78996" i_length="245">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78997" g_stop="79462" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="670" r_length="466" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-U331586" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78548" e_stop="78751"/>
          <exon e_start="78997" e_stop="79462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGAATCCGTACCTAAACATGAGTATGTCAGCTAACAGTCCGTTCTACAGTTCTTGTCGCGTCTGGCATTCTTTTCAGGTGAACAATGTTGCATTTCATCTTTGCTGGGTGGCGGACCGGTGTCATTTCAATTGTTGGTGGTACTGATGGTAAAGATTGCTGGCTTTGGTTGAATGAAAATTGGATCCGCCCTCATGAAAAGGTGAAAAAAATGTACCTTCAATTTGCTTGTGTTTATTTAAGATCATTTTGGCCATTACTTTGAACTACACCTCGGAATATCATCAAACTTGACATGAATTATATCCCATACTACTTTATAACTAATACGCCTATCTTGCGCTTAAATCTTGATTTTACATCTTCTATAATTGAACTGCTATCCCAAAGCATGTTACTAAGTAAATTTATGCATTACTCTTAACTGCCAATGGATGGATACACTAGTACAAGGAAAAACCAGCTTATATTGAACCTGAGGATGAAGTGTAGACGCCAGTCGGTGACAGAAGAGAATGTAGCTTCAAGAATGAGGCAAGCCCACCCACCCCTCGTGTTGTCGCTGAGCATTGCCAGGGGCCACAACGCCTGTGTATCACATTGCCTCAGCTTCCCTACTTTGCATGAGACCTCAATGATGCAATTCTCTGGTTCTGGCTACTGAAGTTCTGAGATAATGCTTTGTTCTTTAAAATGTTAGCATTTGCTATCAAATGCACCATGTTTGTATTTTTCTTACCCAAGAATGTTTATTAATATGGACAATATTTCTGTTGACAAATTTTGTGCTTTCTTTGACACCAAAGTTTTCATTTTTATCCTCTTGTAATTGCAGCATCAAATTTGGAATATTGTACTATTTGCATTTGATAGTATGTTATATATACTCTATCGTTTCAATTTATTTATCAGA</genome_strand>
        <mrna_strand>AGGTGAATCCGTACCTAAACATAAGTATGTCAGCTAACAGTCCGTTCTACAGTTCTTGTCGCGTCTGGCATTCTTTTCAGGTGAACAATGTTGCATTTCATCTTTGCTGGGTGGCGGACCGGTGTCATTTCAATTGTTGGTGGTACTGATGGTAAAGATTGCTGGCTTTGGTTGAATGAAAATTGGATCCGCCCTCATGAAAAG.....................................................................................................................................................................................................................................................TACAAGGAAAAACCAGCTTATATTGAACCTGAGGATGAAGTGTAGACGCCAGTCGGTGACAGAAGAGAATGTAGCTTCAAGAATGAGGCAAGCCCACCCACCCCTCGTGTTGTCGCTGAGCATTGCCAGGGGCCACAACGCCTGTGTATCACATTGCCTCAGCTTCCCTACTTTGCATGAGACCTCAATGATGCAATTCTCTGGTTCTGGCTACTGAAGTTCTGAGATAATGCTTTGTTCTTTAAAATGTTAGCATTTGCTATCAAATGCACCATGTTTGTATTTTTCTTACCCAAGAATGTTTATTAATATGGACAATATTTCTGTTGACAAATTTTGTGCTTTCTTTGACACCAAAGTTTTCATTTTTATCCTCTTGTAATTGCAGCATCAAATTTGGAATATTGTACTATTTGCATTTGATAGTATGTTATATATACTCTATCGTTTCAATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334619" ref_strand="+" ref_description="SGN-U334619        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lipocalin, putative, similar to temperature stress-induced lipocalin (Triticum aestivum) GI:18650668 | chr5:23517287-23518435 REVERSE | Aliases: K21L19.9, K21L19_9(evalue: 2e-11, score=67) genbank/nr: temperature-induced(evalue: 4e-16, score=89)">
      <seq>gtgtaatcatgtctagtgaccgagtccttcaacatgctagtttttctgtcattgttatgttgactgctctcacttgtaatttccttgaagagttctatcaagtctttaatacttttagttcttcaagcctgtgataccttatttgcatgaaccaattatatagtttgtggtatctcagtttgttgtttatgttaaatttcatgaatgatcctcgcgttgagcatgttcattccattagatataatttgaagcttttgctttcctaagatcctcgacgtgtcattgacgacattaaacgctctgctgattagatttgtagaaaaccatatttgtctacctttctcttcctcttcgtattgaaatgaatatcgtttactaataaaacattaggcattattccttccatacccaattctgaaacttttgtttcatgtaaactaaagaagtcaatagtatatttagttacacagactccctattttatttcaagccttctgtttgttggtctatcaaatgtgcattttttttattcgactgtggtgtcttggccaagttttcacgcacgtcaattagtacctccctctcactaaggcttggacaagtcgaaagaaatcacctagtgtttttgcatgttttttccaatggattcttgtttttcgtcttaacaaaatgtattttgttggcagatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccccaatctgattccccaccagatagtgaagatagccccaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="82765" stop="84192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83065" g_stop="83892" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="828" r_length="828" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-U334619" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83065" e_stop="83892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAG</genome_strand>
        <mrna_strand>GTGTAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCCCAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323197" ref_strand="+" ref_description="SGN-U323197        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: AT5G58080.1 | Symbol: None | two-component responsive regulator family protein / response regulator family protein, contains Pfam profile: PF00072 response regulator receiver domain | chr5:23519011-23521227 REVERSE | Aliases: K21L19.7, K21L19_7 (evalue: 3e-13, score=73.2) genbank/nr: gi|30696997|ref|NP_200616.2| response regulator protein family [Arabidopsis thaliana](evalue: 2e-11, score=73.2)">
      <seq>gggattcctgcatctttggagcttgatcaactgcagcagagcaagtgtgccacacacataggagagttgaatcctttggatgagtcaggactgcatacagtggccagtacattcacgaactctagattggttggtagcgcaaacagctctatgcccaatgtatcaaataatcctattttgcttcaagtaaattcccagcaaccactgacggggatgggatttggaaatcagacttctctcaacgtagcctcttttagctctgaggccttcaatactggtgtaagtggttcttccaattttctggaccatgatagatattctaacgagaattggcaaacttctctccagcctctgaagttccagtcaacctcctttccgttaaatgaacctttcagcaacagccatttgcctcaagacagagtacgagacaatgatacttcaactggccctcatttgcagaacaatcctgttgatttttcaacctccaccatagtttccgtacctttcgaagcttcaagaggagaaacacaatgccgtgaaagtttaggggctgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctgtggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaactgcatatcaaatggtagttcttcaatgcacacacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaaaacaaatgaagactacctcttccagacaacaaagcaacaagttggttttcttcctcagggctatggctcccttgatgatcttatgggtgaaatgaaacaggatcaagatggagccatgttagacggaggagaattcggatttgatgcttattcacttggttcaggtttatgaggtttttgtaactagcaagttaggaaggagaggatctagtgatatagcaaaattttatttgctcatttaagagtctcaacaacatatgcatactatgccttctttttcattgttattttcctgtccaggaacggtgttatcgatcgtagaaaactcttaaacgctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="96390" stop="93318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96090" g_stop="95170" g_length="921"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="921" r_length="921" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95169" i_stop="93857" i_length="1313">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93856" g_stop="93619" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="922" r_stop="1159" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1160" polyA_stop="1170"/>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-U323197" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1159</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96090" e_stop="95170"/>
          <exon e_start="93856" e_stop="93619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTCAACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTA</genome_strand>
        <mrna_strand>GGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTCAACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341244" ref_strand="+" ref_description="SGN-U341244        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G25180.1 | Symbol: None | two-component responsive regulator family protein / response regulator family protein, contains Pfam profile: PF00072 response regulator receiver domain | chr2:10731380-10734040 REVERSE | Aliases: F13D4.140, F13D4_140 (evalue: 6e-76, score=281) genbank/nr: SRR391(evalue: 9e-93, score=343)">
      <seq>cgctttggtgaaagggaaaactatgataattttccagttggtatgagggttcttgctgttgatgatgacccaatttgtttgaagttgttggatggactgcttaggaaatgccagtatcacgttactacgacgagtcaggcaagatcggcgttgaagatgttgagggaaaacaaagatagatttgacttggtgatcagtgatgtccacatgcctgatatggatggctttaaacttctggagcttgttggtctcgagatggatcttcccgtcataatgttgtcagcaaacagtgatagcaaacttgtaatgaagggaataactcacggtgcttgtgactatttggtgaagcctgtccggcttgaggagctaaagaatatatggcaacatgtaataaggagaaagaaagttgagcctaagaagcaaaacaagtctgatgatcaagacaaggctcaccagggaggaggagaaggcgaaagaggatcacaggtttcaggtaatgcagatcaaaacgggaaggttaacaagaaaaggaaggatgaagaatatgaaagcgatgaaaatggaaatgatgatgaagatcccggaactcagaagaaacctcgtgtagtttgggctatacagcttcacaagaagtttgttacagcagttcatcagttaggcccttgaaaaagctgtgccctaagaggattcttgatctgatgaatgttgaaggacttacaagagaagaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="99378" stop="96725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99083" g_stop="98963" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98962" i_stop="97909" i_length="1054">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97908" g_stop="97756" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="274" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97755" i_stop="97585" i_length="171">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97584" g_stop="97192" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="668" r_length="394" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97191" i_stop="97087" i_length="105">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97086" g_stop="97025" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="732" r_length="64" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-U341244" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99083" e_stop="98963"/>
          <exon e_start="97908" e_stop="97756"/>
          <exon e_start="97584" e_stop="97192"/>
          <exon e_start="97086" e_stop="97025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGTGGTGAAAGGGAAAACTATGATAATTTTCCAGTTGGTATGAGGGTTCTTGCTGTTGATGATGACCCAATTTGTTTGAAGTTGTTGGATGGACTGCTTAGGAAATGCCAGTATCACGGTATTTATGTTTTTTTTTTCTGTGTTTTTGCTTAAAGATTTCATTTTTTTGGTTTATCAATTTGGACTAGTTGGTAAAGTTTCTGAATTGATTCAGTTTGATGCTATTTGCAATTTCTGCTGTTTGGGAAGTTGTTTTCTGTTCCATTCTGAAAAAAAATCAGAACTTTGTTCTGATTTAGACTTTTATAAGGAGAAGTTTAGATCTTCAACTCCCAGAAAACAAAGGTTTAGAATTTGTTTTTCATAGTTCCAAGATTTTTCATGTTTCTCAATTGCTGTTAATATTGCTTTTCCTCTTCATGCATGGTTCATGTTCCCTTTAAATTGGATTGTTGCTTTTCAACAATGAAAGTCAACAGCTATATATGCTGTGTAATCTCACAAGTGGGGTCGAGGGTAAGTGGACGCATACCGTACTCCAACCTCGTGGACATAGAGAGGCTGTTTCGGGAAGACCCTGTGGTCTTTTCAACCATGGAAGTCATAAATAAAAAAAAGAATCTTGAAGTTCTTTTAATTTGATTTTGGCCTTTTCAACTTGACTGTGTAGTTGAGCTTAAATGGATAGCTCTCTCCGACTTGTTTGGGATTGAGGCGCAGATGTTGTTGTGTACAGCTTACTATGGAGTATAATCAAGTCGAAATTCTCCATTTTGTACTTTTGTTTTGGATAGTCTGGTTTGAAGCCTAGTTTTCTCTCAGATGTTCATGACAGCTTTGGTGGGCGAGTGTGTATGTGCACGCATACGTATGTTAAACTTATATTTTAGCTTATTTAGTATAGTATGGTGATTATATGATGTGAACTTAAATGTATAAGTGAGATTCATATAGCCGACCCCAACTGTTTGGAACTGAGGTGTAGTTTTTGTAGTTGTTCATGACAGCGTTGGAGTTCAACTATGTGTACCATTGTAAATTTATGGGGAGATTCGAAACTTCTAACTTGATTTCCTTCATTTATTTTCGGTTCTTTTCATCTGACTGAAATGTTTTTATTTCCCCAATCAAAATTAACTTGCATTTTCTGAAAATGGTCTGTTGTTTCACAGTTACTACGACGAGTCAGGCAAGATCGGCGTTGAAGATGTTGAGGGAAAACAAAGATAGATTTGACTTGGTGATCAGTGATGTCCACATGCCTGATATGGATGGCTTTAAACTTCTGGAGCTTGTTGGTCTCGAGATGGATCTTCCCGTCATAAGTAAAAATACCTTCATTATCTTAATTGTTTATCTGTCCTTGCTGTTCTTTTCCCTTGGCTGCCGTCAGATAAAATATTGTTGAATCAAGACTTGAAGATCTGTGTTGCTTATATCAAATTAATCCGTTAAAGTTTATTTCGTTTCTTGACCATTGACCTATTCTTGTCCAGTGTTGTCAGCAAACAGTGATAGCAAACTTGTAATGAAGGGAATAACTCACGGTGCTTGTGACTATTTGGTGAAGCCTGTCCGGCTTGAGGAGCTAAAGAATATATGGCAACATGTAATAAGGAGAAAGAAAGTTGAGCCTAAGAAGCAAAACAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGAGGAGAAGGCGAAAGAGGATCACAGGTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAATATGAAAGCGATGAAAATGGAAATGATGATGAAGATCCCGGAACTCAGAAGAAACCTCGTGTAGTTTGGGCTATAGAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGG-CCTTGAAAGTGAGTTTTTTTAGCATTGATGTGGTTATCTTAGATTCATCGTCTATTTTTTTATGTTTGTTCCCATATTAATGGACTTATTTCTCAATAATGTTTCTGATGCAGAAGCTGTG-CCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAG-AGAATGTG</genome_strand>
        <mrna_strand>CGCTTTGGTGAAAGGGAAAACTATGATAATTTTCCAGTTGGTATGAGGGTTCTTGCTGTTGATGATGACCCAATTTGTTTGAAGTTGTTGGATGGACTGCTTAGGAAATGCCAGTATCACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACGACGAGTCAGGCAAGATCGGCGTTGAAGATGTTGAGGGAAAACAAAGATAGATTTGACTTGGTGATCAGTGATGTCCACATGCCTGATATGGATGGCTTTAAACTTCTGGAGCTTGTTGGTCTCGAGATGGATCTTCCCGTCATAA...........................................................................................................................................................................TGTTGTCAGCAAACAGTGATAGCAAACTTGTAATGAAGGGAATAACTCACGGTGCTTGTGACTATTTGGTGAAGCCTGTCCGGCTTGAGGAGCTAAAGAATATATGGCAACATGTAATAAGGAGAAAGAAAGTTGAGCCTAAGAAGCAAAACAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGAGGAGAAGGCGAAAGAGGATCACAGGTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAATATGAAAGCGATGAAAATGGAAATGATGATGAAGATCCCGGAACTCAGAAGAAACCTCGTGTAGTTTGGGCTATACAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGGCCCTTGAAA.........................................................................................................AAGCTGTGCCCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAGAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321283" ref_strand="+" ref_description="SGN-U321283        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L39 (RPL39C) | chr4:15469901-15470565 FORWARD | Aliases: None(evalue: 1e-23, score=105) genbank/nr: gi|50915614|ref|XP_468271.1| putative 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)] >gi|47497035|dbj|BAD19088.1| putative 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)] (evalue: 3e-23, score=110)">
      <seq>gggcgattggcggccaatcggccgaattgagggtttcaatcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaagtcgttttgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaancccccccccgggggccccttttttatttttttttgggcccccaaaaatggggggggaaaaagggggaaatttttttttggggggaaattttttccccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111579" stop="100202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111274" g_stop="111222" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="84" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111136" g_stop="111033" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="188" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110943" g_stop="110732" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="400" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110731" i_stop="108735" i_length="1997">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108734" g_stop="108705" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="430" r_length="30" r_score="0.800"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108704" i_stop="107543" i_length="1162">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107542" g_stop="107494" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="479" r_length="49" r_score="0.735"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107493" i_stop="105232" i_length="2262">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105231" g_stop="105132" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="579" r_length="100" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-U321283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111274" e_stop="111222"/>
          <exon e_start="111136" e_stop="111033"/>
          <exon e_start="110943" e_stop="110732"/>
          <exon e_start="108734" e_stop="108705"/>
          <exon e_start="107542" e_stop="107494"/>
          <exon e_start="105231" e_stop="105132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCTGTTAAATGTTGGTTAATAGTAGTATTTTGTTATTGCATTTTCATGCATTGAGTTATCTGTTTGTGATTTATATATTAATGACCGATTATTGCATTTTCATCCATATTGTAGGCCGTTAGTTGTAAACCATGTTGATTTGAGTTTTAAACATATAAAGGTATGTGCTTTAAGCTTATATCGGAAGAGTGTTTCTCCACTCATCACCTGTACCTACACCTTAGATATTTCCACTGTCAACTTAGTATCAAGAGCCATATTGCATTTTATCCTTTGCCTTTTTATTTGCATATCAAGGCGGCTGCTTCATCGGCTGTTATGTCATTGTGACACACCCCAGAGACCTAGCACATACTTTTGCGATGATTGATTAATCTACTTGTAGTCCTTATGGATGGTGTTGAAAGTGTATTTGATCAGAAGTGTGGACTTGGGAATCTTTCGAGTCCTAAGATATCTTGATTAATTAGAAGTGTTGATCTGGATATCCTGCACTTCAGTGTCTGTAGGAATGTGCATGAAGAAAAATGTTCTTTACTGCAATTATTCATAAACATGGACTGCACAAAAACTTTATTCCAAACCAGGGTGAGAATGACATCCATGAGTGCTAACTGAGCATTTGCCATTGGCTAATATATAGGTTTTGTGTTCTATATCAGATTGAGCTCTCAGCACTTGTCATAGCTAGAGGTGTTTATATTTTCAAAGTGTATTCTACTGGTACTTGATGCATGCATTTGTATAGCTGAATTGTTATTCCATGGACAAGTATAGTTCTGTGGTGTAAATTATGAGGGGTTGGATATCTTTCATGTTGTAGAAATGACTGAACATATATAGTTCCTTTGTGCGACTTTTTTTTTAAAAAAAAGATATTCCAGCCCTCTGTCTATTTTCTTCATATTGCAAAGAGGTGATTGCTTCTTCTTACAGTAGAAGCTTTACATAGTGACTTGGCCAGAGGCTTTCAGCTTGTGTTAGTACTGTATTGCCATTTGCACTTCTGTGATGCAGCAATGGGGCAAATGTATTGTATTATACTTGTAATGTATTCTGGATCATGGACGTATAAAGCAATTGGTTAAATTTGTAAAAATCTCATGCAACTTTTCACCATTCTATGGAAATTGGTTTGTGGATTTCTTTTCGTATTAACAATAAAATAGATGAAAGGCGTTAATTGACACCAGTAAAGCCTGTGTATTAGTGTCTTTCATAGCACATTTATTCAATCTATTTATATCTAAACTTGAACATATTAAGGGTAGAAAATGAGTGTTCCATGTATGAATATTTAGATTTTCAAATTTATCGACATTCGGATATCAGAGTTAAACGTACTCTGGCTGATAATTTTTTGTAAAATCCCACATTTATGTCAGTCATGGAGGGATCCTCTAAAACACATCGAAAGCTCTGAAGATAGTCATTTTGCATTTTGCACTTTGAGAACCCAGAATCTTTTTAAAAAATGTCTTTCGTGATTAACTTAGTCGGTATGGAGGGTGGTTATTCATACGGATAATTCGGGATTGTTCCCCCTTTAATGTTTATGTGATTTGCAAGCTATTACACATGGGTTTTGCTTAGTTGATATAGAGGATGATTATCTATAAGGATGATTCGGCATCGATCCCTTCAATGTTTTCTGAGTTGAGTCTGTAACGTAGGTCTTGCCTAGTACAGTATGCATCCTTCTTTAATGTCTTTTGAGTTAGTCTGTCACATAAGTCTTTGTCTAGTAAGGTTGACAAAAGATGTGACAAAGGTTATAACAACTACGGAATAACAGTGAAGTTCATTATGGTGAAATTCAAGCCGTTTAGGATAAGCTTCACGTAATTGTGTGGACAAGCGGAGTCTGACGACAATATCTTAAAAATCTGTTGATTTTATTTAAATACTCCCATAATTTTTAATTTAATAAGTTGCTCAGGTTTCAGATAACTTGAATTTTAATTTAATAAGTTGCTCAGGTTTCATATGATAAAAAATTAAAAACATTAAACAAAAAAAAAGCCTCTAAAAATAAACAAATGAGAAATATCATCGGTAGAGTTTGTAGGAATATATATAGGAGAAGTTAAAGAAGTAGAGTTCCACTTCAGCTCAAATTTTATCTAAATTTAAATTTCAAATATCACGTTTAAGAGAAAATCAGTTTATTACTCTTTCTTAGTATTTTTTTTGAAAAAATGTAATGCATATATTTTTATAACTAATTTAAATATTTTATTAGTTATCAATAACGGAATAAAAAGAGACTAGTTTGTTACTCCTCTTTATCTTTATTATTTTATTTTATTTTCTAGCGTTTTTCTTCCTCTTTTTCTTTTATTTTGTTATTTTAATATTTTCCCAACGTTTTCTCTTTTTTTTTCTCTCTTGTGTTTATCTTCTTTACTTTTTTTTATTATATGTTATTTTTTTTACTTTTTTTTTAAAATTATTATATCTCTATTTTTTATTTAATATTTAAACCAAACATAAGGATACGTTTTTGAAATAGTAAGAGTTCATTTAGATCTTTTATGTTGTGACTTCTAAAAATATGCATTTTTGTAGGTTATTTTAGTGAATATAAATACTATCTTTACTTTTCTAAATTGAATAGTATTATCTGAAATTATCCATACTCTCAAAATCTAAATTTAAAAATATATTTATAATATCTAAAAAATATTTTTAAACTAATGAAAATAATTCTCTCTCTTTTTTAAAAATCTAATGTAACTTCAAAGACAAATACTTTTAGTTCAAATTCTTAAAATAATATTTAGTAAATTAATCTTAAAATTATCAAGTAGCATTTTTATTAACTTACCACTTGGCTTAATCAAGTTACAAAATACAAATTACTCTCCTTTATTATACATAAATATCTTCTTGAACATTGTCATTGTTGGGAGATGTTGAACTTAGGGCAATTTGGTTTGGATTGTAGATATATAATGTCTAACATGAGTTAAATATGAGTAACTTGTAAATCAATTGAGTATTAATTAATTTTTTCTAATAAAAAACGATGAAAAATGAGTTAGCTATCAATCGATACTATTTATTGGTTATCTTATTTAAGTTAAAAAACTCATTTTTTTTCATAACCTAGCTATTTTTTGCCGACGANNTATAGATAGATCAAATCAGTCATTTAATCTATTATATCCAAAAATATAATACTAATAAAAAAATTATATCTAAAAAAAAAAATAACAAGAAAAATAAATCCTGAATAATATATAGGATACAATATATATGAGAAGTTAAGAAGTAGAGTTCTATTCCAACTCAATTTTTATTTATATTTAAATTTCAAACATCACATCTTTCTATTAAAAAAGATTAGTTTATTACTTTATTTTATTTTTATTTGTGACTCCTCTTAATGTTCTTTACTTTTTTTTTAATTATTAATATTATTAGTATTTTTACTTCTGGTGCTAATATTAATTTTATTATTACTATTATCATATATCTTTTACTTTTCTAAATTAAATAGTATTATTTGAAATTCGTTCTATGAGTAAGAGTTCATTTAGAACTCTTCTACTATGGATTTTTATTTTTTAAAATAAAGATAAAGGTTTTTTATTTATTAAAATCTAATGTAACTTTAAATACAAATACAAATACTTTTAATTTAAATTTTTTGACAATATTTATTAAATTAATCTTAAAATTGTCAAGTGACATTTTATTAACTTGATCTCTTGGCTAAATCACATTACAAACTACTCTCCTTTATTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAAAAATAAAAATAAAATATAAATATAAAAATATATAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATATAAATACATATATATATATACATATAAAAACAAACATACATATAAATCAATATATATATTATATCCAAAACATAATAATAATAATAAAAAATTATATCCAAAATAATAATAATAAATAAAAATTCCTAAACAAAAGGAGAGAAAGTTACTATTTCATTTATTCTAATATATTATTTCAACTTTTATAGAAAATTATGGTTTACTGTTTCAACTAATATGAAAAATTATGGTTTACTATTTCAACTAATATAAAAAATTATTGTTTTGAGGGATAAATATAGCAAAAAAATATTCAAGATGAAAAAAAAAAAGAAATCTTAATATTATGTGGCTTTGCATGTTTTTAGCATTAGTAAAACAAAATATTAGAAAATTTGAAGAATAAAGAGAAAGTATAGCAATTCTCATGGCTCTCCTTTTTTATAGGATTATCTCAAAATTAACCTAAGGTGTCAAAGATATAAACTCTTGTTTAAGGGATCATTAAAAAAAGTAGTCAAATTAATTAACAAGTAATTAACGTATAACTATATATTATATGGACTGATTTGAAAGAGGGAATTTGTGTTTTGAAGAAAGTGAGCTTAGATGAGGGAGAAGACAAAGAGTGATAATAATAATAGAATTATTATTTCCCTAATTAATTTCTCTTTCATTCTTGATTCTTCTTCCTTGTTGAAAACTCACTTTTTTTAATTATTTGGTTAGTATTAAACTCCCTCTTTTTTTTCTAGAGTTTAATTTATCATCATGGCCGCTAATTTATCCTTGGAAGAGCTTAAGAATGAGAAGGTTGATCTTGTAAGTATAATCTTTCCTCTCTTCTCCGGTCGTAGCAGATTCAGAATTTAAATTTTATTCGATAAGTTCTAGCTATAATATTCATTGAGATTTAAGTAATTTTCGTATTATGTTTTGTGTAAAAATAATGATGAATTCGTTAAATATCTATTGATCCCATAGTGCATCTATCTCGATCAGGTTCAGAATTTAAAAATTATAATATTTATTGAGATTTTAGTAATTTTTGCATTATGTTGTGTAAAAATGATGATGAATTCTTAAATTGTTGATTCATATTGCATTTGTCCTTTTCATGGTGACCGAATTCAGAATTTAAATTTTATTCAATACGTGTTCTAATTATGATATTTGTTTAGATTTTAATAACTTTCGCATAATGTTTTGTGTAAAGGTAAAAATAATGATGAATTCGTGCATATACCTCTCTTGTGGTGACCAAGATTCAAAATTTATGTTTTATTTGATGAGTTCTGATTATAATAATTTTTTGTGATTTTAGTCACTTTCATATTATATTTTGTGTTAAAAAATATGATGAATTTGTTAAATTTGTTGATTTCACATAGGGCATGAGTGCCACTCTGACTCAGAATTTAGAGTTTATTCAATGAGTTCTAATTAAAATATTTTTTGGATTTTAGTAACTTTACATTATGTTTTTGTGTAAAAATGATATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GGTTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCCGGGGGCCCCTTTTTTATTTTTTTTTGGGCCCCCAAAAATGGGGGGGGAAAAAGGGGGAAATTTTTTTTTGGGGGGAAATTTTTTCCCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325987" ref_strand="+" ref_description="SGN-U325987        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain PF03660: Uncharacterised protein family (UPF0123) | chr1:2200133-2201139 FORWARD | Aliases: F10K1.35(evalue: 3e-65, score=244) genbank/nr: gi|50929409|ref|XP_474232.1| OSJNBa0084K01.16 [Oryza sativa (japonica cultivar-group)] >gi|38346076|emb|CAE04844.2| OSJNBa0084K01.16 [Oryza sativa (japonica cultivar-group)] >gi|47777378|gb|AAT38012.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 1e-63, score=245)">
      <seq>gggcgattggcggccaatcggccgaattgctcgagtcatttctctgcagctaaacccctgcggctttaggttccagaaacttcgctcatcgattcaggttaagacgtcactgctagaaatatggccaagcatcatcccgatttgatcatgtgccggaagcagccaggaatagctatcggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccggccttgcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgtggtggtgttggtatctctgatgcttactattgcaaggagtgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagaccgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagggtcggatacctctttcacccttcggtgaagttcactactggaattttgtactagcataattgtgtcaaaattaggcatttgagtatagcctatgtacttactcactatattgccttgcaacttgctgtattacatactgatatcacaagtttaacccattgtaatttcgttttgtgcaagggtatgcaacaaaatgccaacgctaatcgacttccgatctagtttcttttgggtgtnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="-" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="115351" stop="111620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115051" g_stop="114984" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="97" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114983" i_stop="112518" i_length="2466">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112517" g_stop="111924" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="691" r_length="594" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="724"/>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="-" ref_id="SGN-U325987" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115051" e_stop="114984"/>
          <exon e_start="112517" e_stop="111924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAGTCATTTCTCTGCAGCTAAACCCCTGCGGCTTTAGGTTCCAGAAACTTCGCTCATCGATTCAGGTTTGCGTTATATCCTCTTAACATTGTTATTAATTTTTAGTTTAATCATGTTTTTTGTTTGATATTGCGTTTGTTATGTGTTTGAATTTTGCTAATTGTTTAATTTCGTTTTTGTTGAATTTTTGATGTTGTTAATAGTTATTTTGATCGTGTTTTATTTGACATTGAGTAGTAATTTGAACGAATTAGTATCGGTTAAAGTTCTACTGATGTTATTAGCTACTTGAACCGTGTTTTGTTTGGTATTCTGTTTGTTTTGTGTTTGAATTTAGCTAATTATGTAATTACGTTTTTGTTGAATTTTTGCTGTTGTTAATAGCTACTTAAATCATGTTTTGTTTTTATATTGAGGTTGTTTCGGATAGGAATTTGAACGATTAGTATTGGTTAAACTTTACTGTTGTTAGTAGCTACTTTTGTTTGATAATGTGTTTGAATTCAGAAAATCACTGAATTTTTTGTATTGGTAGGATTAGTCTATTTAGTAGTAGGAGATTGTTTTACGAAGGGGGAAATAGTTTTCATTCTTAATATGCTTTGTTATGTTTTTGTGTTGTAAATAAATATTTTTTCTGACTCTTCTTTAGTTTTAGGTTTAGATGTAAGTAATTGAGTTCACAGTATTATACCAATTTGCTTTTGTTGCAGTAGCAGAAATAACTTGATCATGAATTAAGGACATCCCTGTTAACCTCAGTTGTAAAATAGTAAAAGCATTGAAGTTTATATATAGCACTTCAACAAAGAAAGAAAGAAAGATGCTTATTGAGTCATTCACATGACGATCACTGTGTTTGCTAGATGTTGAACTAGAGTGTTTCTTGATAAGTGATAGGAGTAGTAACTTAGTAATGCTTAATGTTTGATTTTTTTTCGTCTTGATAGTTGCACAGTATTGGCTAGTTTGCCCATACCTCGACTATTCCATTGGGAACCAGCCACCTATACACTAGTATAGATATCAGGTAACTCAGCTTACAGAACCTCGATGTATAGGAAGAAATCACCTTTTGTTAGGATCTGAAACCAGTCTTCACTTTATTGAGCAACTTATTTAAGTTCAATGATTGCATACATTTAATAATGATCAAGATCTTCTTAGAAAATATGCAAGCAAAGGGCTCTTATAGCCTGTCCAAGGAAAAAGGAATCGGGCAAGGGGATGTGTTTATAGGTGTTCAAAATTGAGAATATTTAATCAATGAGTCTAGTGCAGTAAGTGTATGGACATCATATCTGTGGACTAGAAGGCAGTAGTTTCATCATTAAAAAGAAAGCGATTCTGAAATTCCGACTGTATGAAATGAGTTGAAGTAGGTTCACAACTCAAAAGCACTCGAAGAACTTGCTTTTCTGCGCCTTTGTGGTATTCTGCTTATATCAGTTTCTGCTTGCAAAATGAGATGTAGGATAGTAAATGTTACCTGTTCCCAAAAAAAAATAAAATGAAATGTAGGATAGTGAAGCTAAGATCTCTGCAAGTTCTTAACTCTGTTTGTTAAGATCGTTCCATAACAAACTATGAAATAATTAGCTGGTTAACCATATCAATTTCTGGTAGTGTTAACATAGATGTCATTGTTACTCTCTCTGTAGAAAATTAGAATCAGAGGTGCATAAAGCTGTTTGTGTTTGCAAAGTGCATAGTGTCACCACTCACCAGCAATTGCATTGCTTTATTGATGAGGATTTCTCTTTGGAAAATCTTTTGTGAGGGTCCAATTCTTTTTCCCCTATTGATCGGTCGAGACAATCTTAAATTTAAGAACCAAAAAGTTGATTGAATATTGCCTACACCTTTTATCTTCCCTGTCACAATTTAAATACAAAAGAAACTCTGTGGAACTGTGGAACTCAATTTTTCCATGGTCCATACCATTGTCCATAATGTTTGACAAATCCTTATAAGGAGAAAAGTACAGGAGCTAAAGGGGTAGGGGATAGAGCGAGTTCATCTCCATCTAGACAGTCCCAAAGCTGATGAATCCAAGTTGTTTTGGAGAACTCTGTAACTGATGCTATTTTCATTCATTTTCCTTATCTGTAGGGCATCACGATTGGTAGCAGGATATGTTGACATTAGGGTGATGATATCTATATTTTTACAGAATTCTGTTCTTTTTGCTTCTTGGCAGACATGAACGGTTTTAGACATTTCTGTAACTGTCTAACTGACGCTATTTCGTTCGTTTTTCTTCTATGTGTTGGGCCTAGCAAATGGTAACATGATATGTTATGATACTAGGGTGATAATATTTGTCTCTTTATGGAACTGGAAAGACGTGATAAAGTTGAACTTACTATTTTATCAATCAGAATAAGTTACTGTATTCTACTTCTTGTCCCATTTATATTTTTTACTATGCTTTCTGCTACAATAAGCATAATCATATAGATCTTAGAAACACATTGTTTTGCCTCGTTTCTGCCGTCTGCTAATTACTCTTCCTTAATTTTCTTTTCCAGGTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCTAATCGACTTCCGATCTAGTTTCTTTTGGGT</genome_strand>
        <mrna_strand>CTCGAGTCATTTCTCTGCAGCTAAACCCCTGCGGCTTTAGGTTCCAGAAACTTCGCTCATCGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCTAATCGACTTCCGATCTAGTTTCTTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10523" PGL_stop="743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10523" e_stop="10072"/>
            <exon e_start="9571" e_stop="9501"/>
            <exon e_start="8390" e_stop="8353"/>
            <exon e_start="8254" e_stop="8144"/>
            <exon e_start="4887" e_stop="4788"/>
            <exon e_start="795" e_stop="743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10523" e_stop="10072" e_length="452"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.916">
            <gDNA_intron_boundary i_start="10071" i_stop="9572" i_length="500"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9571" e_stop="9501" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9500" i_stop="8391" i_length="1110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8390" e_stop="8353" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.983">
            <gDNA_intron_boundary i_start="8352" i_stop="8255" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8254" e_stop="8144" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8143" i_stop="4888" i_length="3256"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4887" e_stop="4788" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="4787" i_stop="796" i_length="3992"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="795" e_stop="743" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10523" stop="10072"/>
              <exon start="9571" stop="9501"/>
              <exon start="8390" stop="8353"/>
              <exon start="8254" stop="8144"/>
              <exon start="4887" stop="4788"/>
              <exon start="795" stop="743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACACTCTCCCGCTGTCTTCGGAAAACACTTCCACCTCACTTCACCGCTGCCGCCGTCGCCACCGTCACCGCCACCGCCACCGCCACCGCCACCGCTGTTGTAGATCGACGGCGTCCAATCACAGCCTCGAACGAGGACATTTCATTCTCTCCACAATCTCTCATGGCCGGAATTGTTACCCCTCATGTCTCTTCACAATCCGCCATCGTTCACATCAATGGCAAAAACACATTTCTCTCGCCCCAAAAAACCCTAGATTTTCCAATTCTCTCCGGCTCCGGAGGCTCGTTTCTCCGAATGAGAAGCACAAAGCGGCTCGAGGTGAAGCCGCTTGCTGTATCGCAGAACAGTTCAGCTACTTGTGTTGAGTTATCGGATGATGTTAAACGGAATAAGAGTCCGATTATTGTTATTGATAATTATGATAGCTTCACTTATAATCTCTGTCAG : TATATGGGAGAGCTTGGATGCAGTTTTGAGGTTTATCGAAACGACGAGCTCACTGTGGATGAGCTGAAGAA : GAAAAATCCAAGGGGAATACTAATATCACCTGGACCAG : GTACACCTCAAGATTCAGGCATATCATTGCAAACTGTACTGGAACTTGGACCAACAATTCCGTTATTTGGTGTTTGTATGGGTTTGCAATGCATGGGAGAGGCTTTTGGAG : GAAAAATTGTGCGATCTCCATATGGGGTGATGCACGGGAAAAGCTCCCCTGTATATTATAACGAAGGCGGGGAAGATGGTTTATTTGCAGGGCTATCAAA : CCCATTCACAGCTGGTAGATACCACAGCCTGGTAATAGACAAGGACACTTTCC</gDNA_template>
            <first_frame> K  H  S  P  A  V  F  G  K  H  F  H  L  T  S  P  L  P  P  S  P  P  S  P  P  P  P  P  P  P  P  P  L  L  *  I  D  G  V  Q  S  Q  P  R  T  R  T  F  H  S  L  H  N  L  S  W  P  E  L  L  P  L  M  S  L  H  N  P  P  S  F  T  S  M  A  K  T  H  F  S  R  P  K  K  P  *  I  F  Q  F  S  P  A  P  E  A  R  F  S  E  *  E  A  Q  S  G  S  R  *  S  R  L  L  Y  R  R  T  V  Q  L  L  V  L  S  Y  R  M  M  L  N  G  I  R  V  R  L  L  L  L  I  I  M  I  A  S  L  I  I  S  V  S :   I  W  E  S  L  D  A  V  L  R  F  I  E  T  T  S  S  L  W  M  S  *  R   : R  K  I  Q  G  E  Y  *  Y  H  L  D  Q  :  V  H  L  K  I  Q  A  Y  H  C  K  L  Y  W  N  L  D  Q  Q  F  R  Y  L  V  F  V  W  V  C  N  A  W  E  R  L  L  E  :  E  K  L  C  D  L  H  M  G  *  C  T  G  K  A  P  L  Y  I  I  T  K  A  G  K  M  V  Y  L  Q  G  Y  Q   : T  H  S  Q  L  V  D  T  T  A  W  *  *  T  R  T  L  S </first_frame>
            <second_frame>  N  T  L  P  L  S  S  E  N  T  S  T  S  L  H  R  C  R  R  R  H  R  H  R  H  R  H  R  H  R  H  R  C  C  R  S  T  A  S  N  H  S  L  E  R  G  H  F  I  L  S  T  I  S  H  G  R  N  C  Y  P  S  C  L  F  T  I  R  H  R  S  H  Q  W  Q  K  H  I  S  L  A  P  K  N  P  R  F  S  N  S  L  R  L  R  R  L  V  S  P  N  E  K  H  K  A  A  R  G  E  A  A  C  C  I  A  E  Q  F  S  Y  L  C  *  V  I  G  *  C  *  T  E  *  E  S  D  Y  C  Y  *  *  L  *  *  L  H  L  *  S  L  S   : V  Y  G  R  A  W  M  Q  F  *  G  L  S  K  R  R  A  H  C  G  *  A  E  E  :  E  K  S  K  G  N  T  N  I  T  W  T  R :   Y  T  S  R  F  R  H  I  I  A  N  C  T  G  T  W  T  N  N  S  V  I  W  C  L  Y  G  F  A  M  H  G  R  G  F  W  R :   K  N  C  A  I  S  I  W  G  D  A  R  E  K  L  P  C  I  L  *  R  R  R  G  R  W  F  I  C  R  A  I  K  :  P  I  H  S  W  *  I  P  Q  P  G  N  R  Q  G  H  F   </second_frame>
            <third_frame>   T  L  S  R  C  L  R  K  T  L  P  P  H  F  T  A  A  A  V  A  T  V  T  A  T  A  T  A  T  A  T  A  V  V  D  R  R  R  P  I  T  A  S  N  E  D  I  S  F  S  P  Q  S  L  M  A  G  I  V  T  P  H  V  S  S  Q  S  A  I  V  H  I  N  G  K  N  T  F  L  S  P  Q  K  T  L  D  F  P  I  L  S  G  S  G  G  S  F  L  R  M  R  S  T  K  R  L  E  V  K  P  L  A  V  S  Q  N  S  S  A  T  C  V  E  L  S  D  D  V  K  R  N  K  S  P  I  I  V  I  D  N  Y  D  S  F  T  Y  N  L  C  Q  :  Y  M  G  E  L  G  C  S  F  E  V  Y  R  N  D  E  L  T  V  D  E  L  K  K :   K  N  P  R  G  I  L  I  S  P  G  P   : G  T  P  Q  D  S  G  I  S  L  Q  T  V  L  E  L  G  P  T  I  P  L  F  G  V  C  M  G  L  Q  C  M  G  E  A  F  G   : G  K  I  V  R  S  P  Y  G  V  M  H  G  K  S  S  P  V  Y  Y  N  E  G  G  E  D  G  L  F  A  G  L  S  N :   P  F  T  A  G  R  Y  H  S  L  V  I  D  K  D  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10521" stop="10072"/>
                    <exon start="9571" stop="9501"/>
                    <exon start="8390" stop="8353"/>
                    <exon start="8254" stop="8144"/>
                    <exon start="4887" stop="4788"/>
                    <exon start="795" stop="744"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSRCLRKTLPPHFTAAAVATVTATATATATAVVDRRRPITASNEDISFSPQSLMAGIVTPHVSSQSAIVHINGKNTFLSPQKTLDFPILSGSGGSFLRMRSTKRLEVKPLAVSQNSSATCVELSDDVKRNKSPIIVIDNYDSFTYNLCQYMGELGCSFEVYRNDELTVDELKKKNPRGILISPGPGTPQDSGISLQTVLELGPTIPLFGVCMGLQCMGEAFGGKIVRSPYGVMHGKSSPVYYNEGGEDGLFAGLSNPFTAGRYHSLVIDKDTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="17548" PGL_stop="19119"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17548" e_stop="17796"/>
            <exon e_start="17913" e_stop="18428"/>
            <exon e_start="18518" e_stop="18552"/>
            <exon e_start="19102" e_stop="19119"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.837" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17548" e_stop="17796" e_length="249"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17797" i_stop="17912" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17913" e_stop="18428" e_length="516"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.822">
            <gDNA_intron_boundary i_start="18429" i_stop="18517" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18518" e_stop="18552" e_length="35"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.837">
            <gDNA_intron_boundary i_start="18553" i_stop="19101" i_length="549"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19102" e_stop="19119" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17548" stop="17796"/>
              <exon start="17913" stop="18428"/>
              <exon start="18518" stop="18552"/>
              <exon start="19102" stop="19119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331258" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACCCCTCACTTCAGTTTTTTCTTCTTCACTTTATATGAAAAGACTCAATTTTTTTACCCTTATAATCTAAATCTTTTTGCATATCTAGTTTGGTGATCCAATACCCTTTTGGCTTTTAGTTTGTTTTTTCAATTTTTTCTTGTTCACTTTGTATTAAAGACTCAATTTTTTTGTTCACTTTGTATTAAAGACTCGTTTTTATCCGTGTAATATGAATCTTTTTGCATTTCTGGTTTAGTGATTCA : ATACCTTTTGGATTTTTGTTTCATCAATTCTTTTTCTTGTTCAGTTTGTATCAAGACTCTTTCTTTTTTTAATCATTATAATATGAATCTTTTTGCATATCTTGTTTGGTGATTTAATACCATTTTGGTTTATGTTTCAATTTTTTCTTATTCACTTTGTATCGAGACTCATTTTTTATCCTTGTAATCTGAGTTCATTTGCATATGTTGTTTAAATTATCCAGTACCCTTTTGTATTGTGGTTTATATTTATGCTTTTCATGAGGCTATTCATCATTACTCCATTTTATTTTTTTGTTTGACTTTCTATCAAGACTCAATTTTTATCCATCTGAATCTGTTTTTGTATAATCTTGTTTAATGTTCCAATACCCTTTTGGCTTTTGTTTCATCTTTATGCTTTGATGAGGCTATTACGACGATGTACGAGGATTTCTATCCTCTGTTTGCTTGCTATTTCAGTATTCACTCCTGTTTTCTTGCTTTCATTTAGGCTCAAAAACCTTAACACTGATG : CATCTAAAGACTTTGTTGAAGACTTATCGATTCTT : AAGCATAGAATAGATGCT</gDNA_template>
            <first_frame> K  N  P  S  L  Q  F  F  L  L  H  F  I  *  K  D  S  I  F  L  P  L  *  S  K  S  F  C  I  S  S  L  V  I  Q  Y  P  F  G  F  *  F  V  F  S  I  F  S  C  S  L  C  I  K  D  S  I  F  L  F  T  L  Y  *  R  L  V  F  I  R  V  I  *  I  F  L  H  F  W  F  S  D  S  :  I  P  F  G  F  L  F  H  Q  F  F  F  L  F  S  L  Y  Q  D  S  F  F  F  *  S  L  *  Y  E  S  F  C  I  S  C  L  V  I  *  Y  H  F  G  L  C  F  N  F  F  L  F  T  L  Y  R  D  S  F  F  I  L  V  I  *  V  H  L  H  M  L  F  K  L  S  S  T  L  L  Y  C  G  L  Y  L  C  F  S  *  G  Y  S  S  L  L  H  F  I  F  L  F  D  F  L  S  R  L  N  F  Y  P  S  E  S  V  F  V  *  S  C  L  M  F  Q  Y  P  F  G  F  C  F  I  F  M  L  *  *  G  Y  Y  D  D  V  R  G  F  L  S  S  V  C  L  L  F  Q  Y  S  L  L  F  S  C  F  H  L  G  S  K  T  L  T  L  M  :  H  L  K  T  L  L  K  T  Y  R  F  L :   S  I  E  *  M   </first_frame>
            <second_frame>  K  T  P  H  F  S  F  F  F  F  T  L  Y  E  K  T  Q  F  F  Y  P  Y  N  L  N  L  F  A  Y  L  V  W  *  S  N  T  L  L  A  F  S  L  F  F  Q  F  F  L  V  H  F  V  L  K  T  Q  F  F  C  S  L  C  I  K  D  S  F  L  S  V  *  Y  E  S  F  C  I  S  G  L  V  I  Q :   Y  L  L  D  F  C  F  I  N  S  F  S  C  S  V  C  I  K  T  L  S  F  F  N  H  Y  N  M  N  L  F  A  Y  L  V  W  *  F  N  T  I  L  V  Y  V  S  I  F  S  Y  S  L  C  I  E  T  H  F  L  S  L  *  S  E  F  I  C  I  C  C  L  N  Y  P  V  P  F  C  I  V  V  Y  I  Y  A  F  H  E  A  I  H  H  Y  S  I  L  F  F  C  L  T  F  Y  Q  D  S  I  F  I  H  L  N  L  F  L  Y  N  L  V  *  C  S  N  T  L  L  A  F  V  S  S  L  C  F  D  E  A  I  T  T  M  Y  E  D  F  Y  P  L  F  A  C  Y  F  S  I  H  S  C  F  L  A  F  I  *  A  Q  K  P  *  H  *  C :   I  *  R  L  C  *  R  L  I  D  S   : *  A  *  N  R  C  </second_frame>
            <third_frame>   K  P  L  T  S  V  F  S  S  S  L  Y  M  K  R  L  N  F  F  T  L  I  I  *  I  F  L  H  I  *  F  G  D  P  I  P  F  W  L  L  V  C  F  F  N  F  F  L  F  T  L  Y  *  R  L  N  F  F  V  H  F  V  L  K  T  R  F  Y  P  C  N  M  N  L  F  A  F  L  V  *  *  F   : N  T  F  W  I  F  V  S  S  I  L  F  L  V  Q  F  V  S  R  L  F  L  F  L  I  I  I  I  *  I  F  L  H  I  L  F  G  D  L  I  P  F  W  F  M  F  Q  F  F  L  I  H  F  V  S  R  L  I  F  Y  P  C  N  L  S  S  F  A  Y  V  V  *  I  I  Q  Y  P  F  V  L  W  F  I  F  M  L  F  M  R  L  F  I  I  T  P  F  Y  F  F  V  *  L  S  I  K  T  Q  F  L  S  I  *  I  C  F  C  I  I  L  F  N  V  P  I  P  F  W  L  L  F  H  L  Y  A  L  M  R  L  L  R  R  C  T  R  I  S  I  L  C  L  L  A  I  S  V  F  T  P  V  F  L  L  S  F  R  L  K  N  L  N  T  D   : A  S  K  D  F  V  E  D  L  S  I  L  :  K  H  R  I  D  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18248" stop="18428"/>
                    <exon start="18518" stop="18552"/>
                    <exon start="19102" stop="19119"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICFCIILFNVPIPFWLLFHLYALMRLLRRCTRISILCLLAISVFTPVFLLSFRLKNLNTDASKDFVEDLSILKHRIDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="19757" PGL_stop="22588"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19757" e_stop="19818"/>
            <exon e_start="20525" e_stop="20757"/>
            <exon e_start="21465" e_stop="21822"/>
            <exon e_start="22501" e_stop="22588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.831" acc_prob="0.449" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="0.992"/>
          <exon-only e_score="0.852"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19757" e_stop="19818" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.831" acc_prob="0.449">
            <gDNA_intron_boundary i_start="19819" i_stop="20524" i_length="706"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20525" e_stop="20757" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.974">
            <gDNA_intron_boundary i_start="20758" i_stop="21464" i_length="707"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="21465" e_stop="21822" e_length="358"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="21823" i_stop="22500" i_length="678"/>
          </intron>
          <exon e_serial="4" e_score="0.852">
            <gDNA_exon_boundary e_start="22501" e_stop="22588" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19757" stop="19818"/>
              <exon start="20525" stop="20757"/>
              <exon start="21465" stop="21822"/>
              <exon start="22501" stop="22588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330358" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGACAAGAAAAAAATCAACGAAATCTATCTGAGCAGAAAGTGTCCCCATCTAGAGAAAAG : GAGAAGTCCAAACCAGAAGGGGTTCAACACAGTCGAAGCATACAGTCACATCTGCGAAGGCCATTAGATGAGAAGGTAAAAGAGATGAAAGATAAGGTGATAAGGGCCAAAGCGTACTTGAGTTTTGCACCACCAGATAGCACCTCTCATTTTGTGAAAGAGATAAAGCTACGAATTAAAGAGCTAGAACGAGCAATGGGTGACGTTACTAAAGATTCTGGTTTGTCAAGGAG : GGCCACACAAAAGATGAAAGCCATGGATGGGACCCTGCTGAAAGCAAGCAGAATATACCCTGATTGCTCAGCTATGGTGAATACACTACGTGCCATGATGTATAATGCTGAAGAACAGCTTCGATCACAAAGGGATCATACTTCCTTCCTCGTACAGCTCGCTGCAAGAACTACACCAAAAGGCCTTCATTGCCTTTCCATGCGGTTGACCACAGAATATTTTGATCTGCAGCCTGAGGAGCGGGAGTTTCCTAACCAACACAAACTGCAGGATCCCAATCTCTATCACTTTGCTGTTTTCTCAGACAATGTTTTGGCATGTTCTGTGGTTGTCAATTCAACTGTTTCAACCGCTAAG : GATCCAGAGAAAATTGTCTTCCATATAGTGACTGATTCTCTCAACCTGCCAGCGATGTCGATGTGGTTCTTGATGAATCCTCCTGGAA</gDNA_template>
            <first_frame> V  D  K  K  K  I  N  E  I  Y  L  S  R  K  C  P  H  L  E  K  R :   R  S  P  N  Q  K  G  F  N  T  V  E  A  Y  S  H  I  C  E  G  H  *  M  R  R  *  K  R  *  K  I  R  *  *  G  P  K  R  T  *  V  L  H  H  Q  I  A  P  L  I  L  *  K  R  *  S  Y  E  L  K  S  *  N  E  Q  W  V  T  L  L  K  I  L  V  C  Q  G   : G  P  H  K  R  *  K  P  W  M  G  P  C  *  K  Q  A  E  Y  T  L  I  A  Q  L  W  *  I  H  Y  V  P  *  C  I  M  L  K  N  S  F  D  H  K  G  I  I  L  P  S  S  Y  S  S  L  Q  E  L  H  Q  K  A  F  I  A  F  P  C  G  *  P  Q  N  I  L  I  C  S  L  R  S  G  S  F  L  T  N  T  N  C  R  I  P  I  S  I  T  L  L  F  S  Q  T  M  F  W  H  V  L  W  L  S  I  Q  L  F  Q  P  L  R :   I  Q  R  K  L  S  S  I  *  *  L  I  L  S  T  C  Q  R  C  R  C  G  S  *  *  I  L  L  E </first_frame>
            <second_frame>  W  T  R  K  K  S  T  K  S  I  *  A  E  S  V  P  I  *  R  K   : G  E  V  Q  T  R  R  G  S  T  Q  S  K  H  T  V  T  S  A  K  A  I  R  *  E  G  K  R  D  E  R  *  G  D  K  G  Q  S  V  L  E  F  C  T  T  R  *  H  L  S  F  C  E  R  D  K  A  T  N  *  R  A  R  T  S  N  G  *  R  Y  *  R  F  W  F  V  K  E  :  G  H  T  K  D  E  S  H  G  W  D  P  A  E  S  K  Q  N  I  P  *  L  L  S  Y  G  E  Y  T  T  C  H  D  V  *  C  *  R  T  A  S  I  T  K  G  S  Y  F  L  P  R  T  A  R  C  K  N  Y  T  K  R  P  S  L  P  F  H  A  V  D  H  R  I  F  *  S  A  A  *  G  A  G  V  S  *  P  T  Q  T  A  G  S  Q  S  L  S  L  C  C  F  L  R  Q  C  F  G  M  F  C  G  C  Q  F  N  C  F  N  R  *   : G  S  R  E  N  C  L  P  Y  S  D  *  F  S  Q  P  A  S  D  V  D  V  V  L  D  E  S  S  W   </second_frame>
            <third_frame>   G  Q  E  K  N  Q  R  N  L  S  E  Q  K  V  S  P  S  R  E  K  :  E  K  S  K  P  E  G  V  Q  H  S  R  S  I  Q  S  H  L  R  R  P  L  D  E  K  V  K  E  M  K  D  K  V  I  R  A  K  A  Y  L  S  F  A  P  P  D  S  T  S  H  F  V  K  E  I  K  L  R  I  K  E  L  E  R  A  M  G  D  V  T  K  D  S  G  L  S  R  R :   A  T  Q  K  M  K  A  M  D  G  T  L  L  K  A  S  R  I  Y  P  D  C  S  A  M  V  N  T  L  R  A  M  M  Y  N  A  E  E  Q  L  R  S  Q  R  D  H  T  S  F  L  V  Q  L  A  A  R  T  T  P  K  G  L  H  C  L  S  M  R  L  T  T  E  Y  F  D  L  Q  P  E  E  R  E  F  P  N  Q  H  K  L  Q  D  P  N  L  Y  H  F  A  V  F  S  D  N  V  L  A  C  S  V  V  V  N  S  T  V  S  T  A  K  :  D  P  E  K  I  V  F  H  I  V  T  D  S  L  N  L  P  A  M  S  M  W  F  L  M  N  P  P  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19759" stop="19818"/>
                    <exon start="20525" stop="20757"/>
                    <exon start="21465" stop="21822"/>
                    <exon start="22501" stop="22587"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQEKNQRNLSEQKVSPSREKEKSKPEGVQHSRSIQSHLRRPLDEKVKEMKDKVIRAKAYLSFAPPDSTSHFVKEIKLRIKELERAMGDVTKDSGLSRRATQKMKAMDGTLLKASRIYPDCSAMVNTLRAMMYNAEEQLRSQRDHTSFLVQLAARTTPKGLHCLSMRLTTEYFDLQPEEREFPNQHKLQDPNLYHFAVFSDNVLACSVVVNSTVSTAKDPEKIVFHIVTDSLNLPAMSMWFLMNPPG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="30198" PGL_stop="29735"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30198" e_stop="29735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="30198" e_stop="29735" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30198" stop="29735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343738" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAACTTATATCATTTGGTCATTTGGTGTATTTCGGAGGAGGAATCTTCTTCAAATTTCAAGTTTCGACATCAATATTTTAATTTTCATTATAATAGTTTGTTCTTATACAAACGTTTGGTAACTTCGTTCCACTCTCTAATCTTATATTTATTTTTTGTATTTATTATTTAACTTGTAAGTTGTTCTTGTTAAGTTTCGTATTTTATAATTTATAATTTTATATCATGGAGTCTTCTAAAAAAAGTGGAAGTAAAAAAGGTCTAGTAGAATCAGTAAAAAAATTAGTTAAAAAAACTAACAAAGGTGCTAGTTCGTCTAAATCTAAAATTCCTCTTGTTAGAATAAATACAGATGAATTTACGCATGTGAATGAAACTAGTTTTTCCCGCCCCGGTCCTATAAATATTAATTCAGATAGTCCGACTCCCCATGAACTCTATGAAAGATATTATGGTATTAAT</gDNA_template>
            <first_frame> Y  N  L  Y  H  L  V  I  W  C  I  S  E  E  E  S  S  S  N  F  K  F  R  H  Q  Y  F  N  F  H  Y  N  S  L  F  L  Y  K  R  L  V  T  S  F  H  S  L  I  L  Y  L  F  F  V  F  I  I  *  L  V  S  C  S  C  *  V  S  Y  F  I  I  Y  N  F  I  S  W  S  L  L  K  K  V  E  V  K  K  V  *  *  N  Q  *  K  N  *  L  K  K  L  T  K  V  L  V  R  L  N  L  K  F  L  L  L  E  *  I  Q  M  N  L  R  M  *  M  K  L  V  F  P  A  P  V  L  *  I  L  I  Q  I  V  R  L  P  M  N  S  M  K  D  I  M  V  L   </first_frame>
            <second_frame>  I  T  Y  I  I  W  S  F  G  V  F  R  R  R  N  L  L  Q  I  S  S  F  D  I  N  I  L  I  F  I  I  I  V  C  S  Y  T  N  V  W  *  L  R  S  T  L  *  S  Y  I  Y  F  L  Y  L  L  F  N  L  *  V  V  L  V  K  F  R  I  L  *  F  I  I  L  Y  H  G  V  F  *  K  K  W  K  *  K  R  S  S  R  I  S  K  K  I  S  *  K  N  *  Q  R  C  *  F  V  *  I  *  N  S  S  C  *  N  K  Y  R  *  I  Y  A  C  E  *  N  *  F  F  P  P  R  S  Y  K  Y  *  F  R  *  S  D  S  P  *  T  L  *  K  I  L  W  Y  *  </second_frame>
            <third_frame>   *  L  I  S  F  G  H  L  V  Y  F  G  G  G  I  F  F  K  F  Q  V  S  T  S  I  F  *  F  S  L  *  *  F  V  L  I  Q  T  F  G  N  F  V  P  L  S  N  L  I  F  I  F  C  I  Y  Y  L  T  C  K  L  F  L  L  S  F  V  F  Y  N  L  *  F  Y  I  M  E  S  S  K  K  S  G  S  K  K  G  L  V  E  S  V  K  K  L  V  K  K  T  N  K  G  A  S  S  S  K  S  K  I  P  L  V  R  I  N  T  D  E  F  T  H  V  N  E  T  S  F  S  R  P  G  P  I  N  I  N  S  D  S  P  T  P  H  E  L  Y  E  R  Y  Y  G  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29980" stop="29735"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYIMESSKKSGSKKGLVESVKKLVKKTNKGASSSKSKIPLVRINTDEFTHVNETSFSRPGPININSDSPTPHELYERYYGIN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41443" PGL_stop="45673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41443" e_stop="41559"/>
            <exon e_start="43655" e_stop="44960"/>
            <exon e_start="45658" e_stop="45673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.949"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="41443" e_stop="41559" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41560" i_stop="43654" i_length="2095"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43655" e_stop="44960" e_length="1306"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44961" i_stop="45657" i_length="697"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="45658" e_stop="45673" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41443" stop="41559"/>
              <exon start="43655" stop="44960"/>
              <exon start="45658" stop="45673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTCTCCGGCAACCAACTTTGTTCTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAA : ATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGAACCTTCAGTAGCATTGGATGACGAAGGTGTGAAATTGCTAGAGTATATTATTGCAGAGCACAGGAAAAAAGGTGGTATTGTCATTGTCGCCACCCATCTGCCTATTCAGATCGAGGATGCAATGTTTTTAAGGTTGCCACCAAGGTTCCCTAGAAGGATGACTTTAGTAGACATGCTTGATAGAGGCGGCCTCGACTGATCATTAAGAAGATAAAGAGTCCAATCTAAAGAAGCTCTCCAATGAATTCAAAAGGGAGCTGTTTTCTCTTTCATTCTTGATGATTGCAAGAATTTCTCTATCTTTACTTTGTTAGCTCCTCCTCAATTTGCACTTCACTTTGCCCCTAAAATGTGCTGAGAACACATGCCCTCATTGGTCTAATGGTATGAACGGCAACATTGGATGTGTGGATTAGACGAATGTCACGAGTTTGAATTCGTTGCAGACAAAAGCTTGTAATTTAAGCAGCAAGGAGGGGTAAGTTCATTATCCATCGAGTTTCGAACCCTGTCGGCCGGCACTCGGGGATTTCTAGTTTTTTTGTAAAAGAATTTTTGTAGATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGGACATTACAATATAAGATAAGTCTTAGCTTTGTTTTGTCAGCAA : AAAACAAAAAAAAAAA</gDNA_template>
            <first_frame> V  F  S  G  N  Q  L  C  S  E  K  I  L  H  C  *  L  *  L  D  G  R  R  *  A  E  R  P  E  V  I  P  F  A  V  E  N  H  K  :  I  Q  A  R  L  E  R  A  S  A  S  N  K  E  V  L  Y  L  L  L  I  L  V  L  H  S  L  E  M  S  L  C  R  P  P  L  P  R  L  L  L  N  N  V  S  C  M  R  N  A  Q  Q  I  L  R  H  I  N  V  S  L  H  D  G  G  A  L  V  L  T  G  T  N  G  S  G  K  S  T  F  L  R  M  L  A  G  F  S  K  P  S  A  G  E  I  L  W  N  G  H  D  I  T  D  S  G  V  F  Q  Q  Y  K  L  Q  L  N  W  L  S  L  K  D  A  I  K  E  K  F  T  V  L  D  N  V  Q  W  F  E  V  L  E  G  K  Q  G  K  S  L  P  A  L  E  L  M  G  L  G  R  L  V  N  D  K  A  R  M  L  S  M  G  Q  R  K  R  V  Q  L  A  R  L  L  A  I  D  R  P  I  W  L  L  D  E  P  S  V  A  L  D  D  E  G  V  K  L  L  E  Y  I  I  A  E  H  R  K  K  G  G  I  V  I  V  A  T  H  L  P  I  Q  I  E  D  A  M  F  L  R  L  P  P  R  F  P  R  R  M  T  L  V  D  M  L  D  R  G  G  L  D  *  S  L  R  R  *  R  V  Q  S  K  E  A  L  Q  *  I  Q  K  G  A  V  F  S  F  I  L  D  D  C  K  N  F  S  I  F  T  L  L  A  P  P  Q  F  A  L  H  F  A  P  K  M  C  *  E  H  M  P  S  L  V  *  W  Y  E  R  Q  H  W  M  C  G  L  D  E  C  H  E  F  E  F  V  A  D  K  S  L  *  F  K  Q  Q  G  G  V  S  S  L  S  I  E  F  R  T  L  S  A  G  T  R  G  F  L  V  F  L  *  K  N  F  C  R  *  H  L  A  S  D  Y  Q  M  L  R  F  S  Y  T  T  S  Q  I  A  L  L  F  V  C  *  F  E  P  Q  N  S  V  L  I  W  L  L  *  Q  L  W  T  L  Q  Y  K  I  S  L  S  F  V  L  S  A   : K  N  K  K  K   </first_frame>
            <second_frame>  S  S  P  A  T  N  F  V  L  R  K  Y  F  I  A  S  C  S  S  T  D  G  G  K  Q  N  G  R  R  *  F  H  L  L  *  K  I  T  K :   S  K  Q  D  *  K  E  H  Q  P  Q  T  R  K  Y  Y  I  Y  Y  *  S  W  S  F  I  H  L  R  C  L  C  V  D  L  H  F  L  D  F  C  *  I  T  S  R  V  *  E  M  L  N  K  F  C  A  T  *  M  F  P  S  M  M  V  V  H  W  Y  *  Q  A  P  M  A  L  V  N  P  H  S  C  A  C  W  L  V  S  Q  N  H  Q  L  V  R  Y  S  G  M  A  M  T  L  L  I  Q  V  F  F  N  S  T  N  F  N  S  I  G  C  L  L  R  T  P  S  K  R  S  S  R  S  L  T  M  F  N  G  L  K  F  L  K  A  S  K  G  S  R  C  Q  L  W  N  L  W  G  L  E  D  *  *  T  I  K  H  G  C  F  L  W  V  K  G  K  G  Y  S  S  P  D  C  *  Q  L  I  D  L  F  G  C  L  M  N  L  Q  *  H  W  M  T  K  V  *  N  C  *  S  I  L  L  Q  S  T  G  K  K  V  V  L  S  L  S  P  P  I  C  L  F  R  S  R  M  Q  C  F  *  G  C  H  Q  G  S  L  E  G  *  L  *  *  T  C  L  I  E  A  A  S  T  D  H  *  E  D  K  E  S  N  L  K  K  L  S  N  E  F  K  R  E  L  F  S  L  S  F  L  M  I  A  R  I  S  L  S  L  L  C  *  L  L  L  N  L  H  F  T  L  P  L  K  C  A  E  N  T  C  P  H  W  S  N  G  M  N  G  N  I  G  C  V  D  *  T  N  V  T  S  L  N  S  L  Q  T  K  A  C  N  L  S  S  K  E  G  *  V  H  Y  P  S  S  F  E  P  C  R  P  A  L  G  D  F  *  F  F  C  K  R  I  F  V  D  N  T  L  H  Q  I  I  R  C  C  V  S  L  I  Q  H  P  K  *  L  Y  C  L  Y  A  S  L  N  H  R  I  Q  Y  L  F  G  F  C  N  N  F  G  H  Y  N  I  R  *  V  L  A  L  F  C  Q  Q  :  K  T  K  K  K  </second_frame>
            <third_frame>   L  L  R  Q  P  T  L  F  *  E  N  T  S  L  L  A  V  A  R  R  T  A  V  S  R  T  A  G  G  D  S  I  C  C  R  K  S  Q   : N  P  S  K  I  R  K  S  I  S  L  K  Q  G  S  T  I  S  T  T  N  L  G  P  S  F  T  *  D  V  F  V  *  T  S  T  S  S  T  S  A  E  *  R  L  V  Y  E  K  C  S  T  N  F  A  P  H  K  C  F  P  P  *  W  W  C  T  G  T  N  R  H  Q  W  L  W  *  I  H  I  L  A  H  V  G  W  F  L  K  T  I  S  W  *  D  T  L  E  W  P  *  H  Y  *  F  R  C  F  S  T  V  Q  T  S  T  Q  L  A  V  S  *  G  R  H  Q  R  E  V  H  G  P  *  Q  C  S  M  V  *  S  S  *  R  Q  A  R  E  V  A  A  S  F  G  T  Y  G  A  W  K  I  S  K  R  *  S  T  D  A  F  Y  G  S  K  E  K  G  T  A  R  Q  I  V  S  N  *  S  T  Y  L  V  A  *  *  T  F  S  S  I  G  *  R  R  C  E  I  A  R  V  Y  Y  C  R  A  Q  E  K  R  W  Y  C  H  C  R  H  P  S  A  Y  S  D  R  G  C  N  V  F  K  V  A  T  K  V  P  *  K  D  D  F  S  R  H  A  *  *  R  R  P  R  L  I  I  K  K  I  K  S  P  I  *  R  S  S  P  M  N  S  K  G  S  C  F  L  F  H  S  *  *  L  Q  E  F  L  Y  L  Y  F  V  S  S  S  S  I  C  T  S  L  C  P  *  N  V  L  R  T  H  A  L  I  G  L  M  V  *  T  A  T  L  D  V  W  I  R  R  M  S  R  V  *  I  R  C  R  Q  K  L  V  I  *  A  A  R  R  G  K  F  I  I  H  R  V  S  N  P  V  G  R  H  S  G  I  S  S  F  F  V  K  E  F  L  *  I  T  P  C  I  R  L  S  D  V  A  F  L  L  Y  N  I  P  N  S  F  I  V  C  M  L  V  *  T  T  E  F  S  T  Y  L  A  F  V  T  T  L  D  I  T  I  *  D  K  S  *  L  C  F  V  S  K :   K  Q  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41515" stop="41559"/>
                    <exon start="43655" stop="44428"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AERPEVIPFAVENHKIQARLERASASNKEVLYLLLILVLHSLEMSLCRPPLPRLLLNNVSCMRNAQQILRHINVSLHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITDSGVFQQYKLQLNWLSLKDAIKEKFTVLDNVQWFEVLEGKQGKSLPALELMGLGRLVNDKARMLSMGQRKRVQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKKGGIVIVATHLPIQIEDAMFLRLPPRFPRRMTLVDMLDRGGLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44773" e_stop="44942"/>
            <exon e_start="45537" e_stop="45548"/>
            <exon e_start="45643" e_stop="45664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.925" e_score="0.976"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="44773" e_stop="44942" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="44943" i_stop="45536" i_length="594"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="45537" e_stop="45548" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45549" i_stop="45642" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.909">
            <gDNA_exon_boundary e_start="45643" e_stop="45664" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44773" stop="44942"/>
              <exon start="45537" stop="45548"/>
              <exon start="45643" stop="45664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337759" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAAAGAATTTTTGTAGATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGGACATTACAATATAAGATAAGTCTTA : AAAAATCACGTG : TCTGCAAAAAAAAAAAAAACAA</gDNA_template>
            <first_frame> V  K  E  F  L  *  I  T  P  C  I  R  L  S  D  V  A  F  L  L  Y  N  I  P  N  S  F  I  V  C  M  L  V  *  T  T  E  F  S  T  Y  L  A  F  V  T  T  L  D  I  T  I  *  D  K  S  * :   K  I  T  C :   L  Q  K  K  K  K  Q </first_frame>
            <second_frame>  *  K  N  F  C  R  *  H  L  A  S  D  Y  Q  M  L  R  F  S  Y  T  T  S  Q  I  A  L  L  F  V  C  *  F  E  P  Q  N  S  V  L  I  W  L  L  *  Q  L  W  T  L  Q  Y  K  I  S  L   : K  K  S  R   : V  C  K  K  K  K  N   </second_frame>
            <third_frame>   K  R  I  F  V  D  N  T  L  H  Q  I  I  R  C  C  V  S  L  I  Q  H  P  K  *  L  Y  C  L  Y  A  S  L  N  H  R  I  Q  Y  L  F  G  F  C  N  N  F  G  H  Y  N  I  R  *  V  L  :  K  N  H  V  :  S  A  K  K  K  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0072J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="45682" PGL_stop="48122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45682" e_stop="45898"/>
            <exon e_start="47007" e_stop="47090"/>
            <exon e_start="47605" e_stop="47639"/>
            <exon e_start="47764" e_stop="47831"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.841" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.700" e_score="0.988"/>
          <exon-intron don_prob="0.932" acc_prob="0.817" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45682" e_stop="45898" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.841">
            <gDNA_intron_boundary i_start="45899" i_stop="47006" i_length="1108"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="47007" e_stop="47090" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.700">
            <gDNA_intron_boundary i_start="47091" i_stop="47604" i_length="514"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47605" e_stop="47639" e_length="35"/>
          </exon>
          <intron i_serial="3" don_prob="0.932" acc_prob="0.817">
            <gDNA_intron_boundary i_start="47640" i_stop="47763" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47764" e_stop="47831" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45682" stop="45898"/>
              <exon start="47007" stop="47090"/>
              <exon start="47605" stop="47639"/>
              <exon start="47764" stop="47831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339709" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGTTTTATTGAAAAATGATGAAGAAATCATGGGTTTGTACTTTGATTACTCAATTTTGTTTATGTTTGTCTCTTTTTCTTGTTCTTAACTTGTGTCAAAATCAGAAGCCAATGATAAGGAATGGAAATGTGAATGATCTTCCCATGGATATATATTTTATAAGTGTTACAGGGGGTATTAGAACTCTTGAAGAGCAGACCCTTCTTCTCAAACAG : GTGGAGAAGGTAGCAAAAAAGTTCAATGCAAGATTCGTTATCAACATAAGCGAACTTGGGGAAGATGATCCTCTTATGCAAAAT : GCTACTTGGCGTTTTCCTTCCGTGAAGATCCCCTG : GTACTCTACTCGAGCTCTCGAAGGACAAGGGGTGAATCACTACCTTAAACAATTCAAATTTGCACATG</gDNA_template>
            <first_frame> W  V  L  L  K  N  D  E  E  I  M  G  L  Y  F  D  Y  S  I  L  F  M  F  V  S  F  S  C  S  *  L  V  S  K  S  E  A  N  D  K  E  W  K  C  E  *  S  S  H  G  Y  I  F  Y  K  C  Y  R  G  Y  *  N  S  *  R  A  D  P  S  S  Q  T   : G  G  E  G  S  K  K  V  Q  C  K  I  R  Y  Q  H  K  R  T  W  G  R  *  S  S  Y  A  K   : C  Y  L  A  F  S  F  R  E  D  P  L  :  V  L  Y  S  S  S  R  R  T  R  G  E  S  L  P  *  T  I  Q  I  C  T   </first_frame>
            <second_frame>  G  F  Y  *  K  M  M  K  K  S  W  V  C  T  L  I  T  Q  F  C  L  C  L  S  L  F  L  V  L  N  L  C  Q  N  Q  K  P  M  I  R  N  G  N  V  N  D  L  P  M  D  I  Y  F  I  S  V  T  G  G  I  R  T  L  E  E  Q  T  L  L  L  K  Q  :  V  E  K  V  A  K  K  F  N  A  R  F  V  I  N  I  S  E  L  G  E  D  D  P  L  M  Q  N  :  A  T  W  R  F  P  S  V  K  I  P  W :   Y  S  T  R  A  L  E  G  Q  G  V  N  H  Y  L  K  Q  F  K  F  A  H  </second_frame>
            <third_frame>   G  F  I  E  K  *  *  R  N  H  G  F  V  L  *  L  L  N  F  V  Y  V  C  L  F  F  L  F  L  T  C  V  K  I  R  S  Q  *  *  G  M  E  M  *  M  I  F  P  W  I  Y  I  L  *  V  L  Q  G  V  L  E  L  L  K  S  R  P  F  F  S  N  R :   W  R  R  *  Q  K  S  S  M  Q  D  S  L  S  T  *  A  N  L  G  K  M  I  L  L  C  K  M :   L  L  G  V  F  L  P  *  R  S  P   : G  T  L  L  E  L  S  K  D  K  G  *  I  T  T  L  N  N  S  N  L  H  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45695" stop="45898"/>
                    <exon start="47007" stop="47090"/>
                    <exon start="47605" stop="47639"/>
                    <exon start="47764" stop="47830"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMMKKSWVCTLITQFCLCLSLFLVLNLCQNQKPMIRNGNVNDLPMDIYFISVTGGIRTLEEQTLLLKQVEKVAKKFNARFVINISELGEDDPLMQNATWRFPSVKIPWYSTRALEGQGVNHYLKQFKFAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45702" e_stop="45715"/>
            <exon e_start="45788" e_stop="45898"/>
            <exon e_start="47007" e_stop="47090"/>
            <exon e_start="47605" e_stop="47639"/>
            <exon e_start="47747" e_stop="48122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.774" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.841" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.700" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.705" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45702" e_stop="45715" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.774" acc_prob="0.991">
            <gDNA_intron_boundary i_start="45716" i_stop="45787" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45788" e_stop="45898" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.841">
            <gDNA_intron_boundary i_start="45899" i_stop="47006" i_length="1108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47007" e_stop="47090" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.700">
            <gDNA_intron_boundary i_start="47091" i_stop="47604" i_length="514"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47605" e_stop="47639" e_length="35"/>
          </exon>
          <intron i_serial="4" don_prob="0.932" acc_prob="0.705">
            <gDNA_intron_boundary i_start="47640" i_stop="47746" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47747" e_stop="48122" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45702" stop="45715"/>
              <exon start="45788" stop="45898"/>
              <exon start="47007" stop="47090"/>
              <exon start="47605" stop="47639"/>
              <exon start="47747" stop="48122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGAAATCATGG : AAGCCAATGATAAGGAATGGAAATGTGAATGATCTTCCCATGGATATATATTTTATAAGTGTTACAGGGGGTATTAGAACTCTTGAAGAGCAGACCCTTCTTCTCAAACAG : GTGGAGAAGGTAGCAAAAAAGTTCAATGCAAGATTCGTTATCAACATAAGCGAACTTGGGGAAGATGATCCTCTTATGCAAAAT : GCTACTTGGCGTTTTCCTTCCGTGAAGATCCCCTG : CCATCCTAAACTTGTAGGTACTCTACTCGAGCTCTCGAAGGACAAGGGGTGAATCACTACCTTAAACAATTCAAATTTGCACATGGAAGCTTAGATATTATAGTTGTAGATACAGGATTATATGAGGTAAATGTTTCTTTTTTATCTGATTACTTGGCCTTTTACGCACGTTACCAAGATGGTGTCACTTCAGCTTTCTGCTCACTTGATTGTCACCTATCGTCTTTGTAAGATATATATTGTATTTTTCTATATAATGTTTTACCTAACCCGCTCCTGATAAGTCTGTAGCTTATGTGTTGGTTTTATCTCTGGAAGTTCAGAAAATTTATTCCAAAGACCCTTGGTTACATCAAATATGATGGCATGTCATTTG</gDNA_template>
            <first_frame> *  R  N  H  G :   S  Q  *  *  G  M  E  M  *  M  I  F  P  W  I  Y  I  L  *  V  L  Q  G  V  L  E  L  L  K  S  R  P  F  F  S  N  R :   W  R  R  *  Q  K  S  S  M  Q  D  S  L  S  T  *  A  N  L  G  K  M  I  L  L  C  K  M :   L  L  G  V  F  L  P  *  R  S  P   : A  I  L  N  L  *  V  L  Y  S  S  S  R  R  T  R  G  E  S  L  P  *  T  I  Q  I  C  T  W  K  L  R  Y  Y  S  C  R  Y  R  I  I  *  G  K  C  F  F  F  I  *  L  L  G  L  L  R  T  L  P  R  W  C  H  F  S  F  L  L  T  *  L  S  P  I  V  F  V  R  Y  I  L  Y  F  S  I  *  C  F  T  *  P  A  P  D  K  S  V  A  Y  V  L  V  L  S  L  E  V  Q  K  I  Y  S  K  D  P  W  L  H  Q  I  *  W  H  V  I   </first_frame>
            <second_frame>  E  E  I  M   : E  A  N  D  K  E  W  K  C  E  *  S  S  H  G  Y  I  F  Y  K  C  Y  R  G  Y  *  N  S  *  R  A  D  P  S  S  Q  T   : G  G  E  G  S  K  K  V  Q  C  K  I  R  Y  Q  H  K  R  T  W  G  R  *  S  S  Y  A  K   : C  Y  L  A  F  S  F  R  E  D  P  L  :  P  S  *  T  C  R  Y  S  T  R  A  L  E  G  Q  G  V  N  H  Y  L  K  Q  F  K  F  A  H  G  S  L  D  I  I  V  V  D  T  G  L  Y  E  V  N  V  S  F  L  S  D  Y  L  A  F  Y  A  R  Y  Q  D  G  V  T  S  A  F  C  S  L  D  C  H  L  S  S  L  *  D  I  Y  C  I  F  L  Y  N  V  L  P  N  P  L  L  I  S  L  *  L  M  C  W  F  Y  L  W  K  F  R  K  F  I  P  K  T  L  G  Y  I  K  Y  D  G  M  S  F  </second_frame>
            <third_frame>   K  K  S  W  :  K  P  M  I  R  N  G  N  V  N  D  L  P  M  D  I  Y  F  I  S  V  T  G  G  I  R  T  L  E  E  Q  T  L  L  L  K  Q  :  V  E  K  V  A  K  K  F  N  A  R  F  V  I  N  I  S  E  L  G  E  D  D  P  L  M  Q  N  :  A  T  W  R  F  P  S  V  K  I  P  C :   H  P  K  L  V  G  T  L  L  E  L  S  K  D  K  G  *  I  T  T  L  N  N  S  N  L  H  M  E  A  *  I  L  *  L  *  I  Q  D  Y  M  R  *  M  F  L  F  Y  L  I  T  W  P  F  T  H  V  T  K  M  V  S  L  Q  L  S  A  H  L  I  V  T  Y  R  L  C  K  I  Y  I  V  F  F  Y  I  M  F  Y  L  T  R  S  *  *  V  C  S  L  C  V  G  F  I  S  G  S  S  E  N  L  F  Q  R  P  L  V  T  S  N  M  M  A  C  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45704" stop="45715"/>
                    <exon start="45788" stop="45898"/>
                    <exon start="47007" stop="47090"/>
                    <exon start="47605" stop="47639"/>
                    <exon start="47747" stop="47798"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSWKPMIRNGNVNDLPMDIYFISVTGGIRTLEEQTLLLKQVEKVAKKFNARFVINISELGEDDPLMQNATWRFPSVKIPCHPKLVGTLLELSKDKG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47756" stop="47977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCRYSTRALEGQGVNHYLKQFKFAHGSLDIIVVDTGLYEVNVSFLSDYLAFYARYQDGVTSAFCSLDCHLSSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="48780" PGL_stop="50324"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48780" e_stop="48853"/>
            <exon e_start="48941" e_stop="49052"/>
            <exon e_start="49407" e_stop="49537"/>
            <exon e_start="49745" e_stop="49793"/>
            <exon e_start="49881" e_stop="50324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.409" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.682" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.134" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.829" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48780" e_stop="48853" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.409" acc_prob="0.976">
            <gDNA_intron_boundary i_start="48854" i_stop="48940" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48941" e_stop="49052" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.682" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49053" i_stop="49406" i_length="354"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49407" e_stop="49537" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.134" acc_prob="0.981">
            <gDNA_intron_boundary i_start="49538" i_stop="49744" i_length="207"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49745" e_stop="49793" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.829">
            <gDNA_intron_boundary i_start="49794" i_stop="49880" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49881" e_stop="50324" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48780" stop="48853"/>
              <exon start="48941" stop="49052"/>
              <exon start="49407" stop="49537"/>
              <exon start="49745" stop="49793"/>
              <exon start="49881" stop="50324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328901" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGCTTCAAATGGTGCTGGAGATAGTCAGTCACAATGGCTGATAGACACACTTGAAAACAGTGAAAGCAAATG : GTGCATTGCTGTTGGATTTCATCCATTGGTAGTTTGCGAAGAAGATGCTCCTCAAACAAAACTAAAACACAAATTCCAGTCTTTACATGGCCTATTTCTGAAGTATGGTGTG : GATGCATATATCAGTGCCCCTGTTTGTGCTGACAATGTTGAGGAAAGACATATTGCAAAATCCAAAACTAGTATTGGCAGATATAAAGGACCTTTGCTGACTAAAGTGAATCAGAACTTGCCTTGCTCTAT : GGGAAGAGTAGATGGATTCCTACTTCACAAAGCCAGTGCTTTAGAGATT : GTTTCCTATTTAGTCACCTTGGAAGGTGATGTTGTGCAGAAATTTTTTCTCCATCAAAGAGGCAAAGATGTTATGTAGATATTCCTAAAGCTTCAAACATCATTTAGGGGAGCCATTTGCTTCAGATCGCCTTTTTTCGTTCTAGTTGTCGTCGTGGAAAAGAATGAAAGAAGATCATAGATTTAATTAAATATTAGTGAAGAATCGTAATTCTCGTCTTCGTTCTCTTTTTTTTTTCCCTTTGCAGAGTAAGGGAAAATGAATTACGAAAGAAGCAGATTCAGTACTGTGCTCAAGTTTGAACTAATAGATTCAACGTTTATACTCAAGTTGAAATTCACATCTTTTGTACGATACTGATGTTCATTTTGAATATCACTGGATCCTTTCCAAATTTTATTGAGATGTTTATGCTAATAGAGCGAATGTGTTATTCTATATTAT</gDNA_template>
            <first_frame> V  A  S  N  G  A  G  D  S  Q  S  Q  W  L  I  D  T  L  E  N  S  E  S  K  W :   C  I  A  V  G  F  H  P  L  V  V  C  E  E  D  A  P  Q  T  K  L  K  H  K  F  Q  S  L  H  G  L  F  L  K  Y  G  V  :  D  A  Y  I  S  A  P  V  C  A  D  N  V  E  E  R  H  I  A  K  S  K  T  S  I  G  R  Y  K  G  P  L  L  T  K  V  N  Q  N  L  P  C  S  M :   G  R  V  D  G  F  L  L  H  K  A  S  A  L  E  I  :  V  S  Y  L  V  T  L  E  G  D  V  V  Q  K  F  F  L  H  Q  R  G  K  D  V  M  *  I  F  L  K  L  Q  T  S  F  R  G  A  I  C  F  R  S  P  F  F  V  L  V  V  V  V  E  K  N  E  R  R  S  *  I  *  L  N  I  S  E  E  S  *  F  S  S  S  F  S  F  F  F  P  F  A  E  *  G  K  M  N  Y  E  R  S  R  F  S  T  V  L  K  F  E  L  I  D  S  T  F  I  L  K  L  K  F  T  S  F  V  R  Y  *  C  S  F  *  I  S  L  D  P  F  Q  I  L  L  R  C  L  C  *  *  S  E  C  V  I  L  Y  Y </first_frame>
            <second_frame>  L  L  Q  M  V  L  E  I  V  S  H  N  G  *  *  T  H  L  K  T  V  K  A  N   : G  A  L  L  L  D  F  I  H  W  *  F  A  K  K  M  L  L  K  Q  N  *  N  T  N  S  S  L  Y  M  A  Y  F  *  S  M  V  W :   M  H  I  S  V  P  L  F  V  L  T  M  L  R  K  D  I  L  Q  N  P  K  L  V  L  A  D  I  K  D  L  C  *  L  K  *  I  R  T  C  L  A  L   : W  E  E  *  M  D  S  Y  F  T  K  P  V  L  *  R  L :   F  P  I  *  S  P  W  K  V  M  L  C  R  N  F  F  S  I  K  E  A  K  M  L  C  R  Y  S  *  S  F  K  H  H  L  G  E  P  F  A  S  D  R  L  F  S  F  *  L  S  S  W  K  R  M  K  E  D  H  R  F  N  *  I  L  V  K  N  R  N  S  R  L  R  S  L  F  F  F  P  L  Q  S  K  G  K  *  I  T  K  E  A  D  S  V  L  C  S  S  L  N  *  *  I  Q  R  L  Y  S  S  *  N  S  H  L  L  Y  D  T  D  V  H  F  E  Y  H  W  I  L  S  K  F  Y  *  D  V  Y  A  N  R  A  N  V  L  F  Y  I   </second_frame>
            <third_frame>   C  F  K  W  C  W  R  *  S  V  T  M  A  D  R  H  T  *  K  Q  *  K  Q  M  :  V  H  C  C  W  I  S  S  I  G  S  L  R  R  R  C  S  S  N  K  T  K  T  Q  I  P  V  F  T  W  P  I  S  E  V  W  C   : G  C  I  Y  Q  C  P  C  L  C  *  Q  C  *  G  K  T  Y  C  K  I  Q  N  *  Y  W  Q  I  *  R  T  F  A  D  *  S  E  S  E  L  A  L  L  Y  :  G  K  S  R  W  I  P  T  S  Q  S  Q  C  F  R  D   : C  F  L  F  S  H  L  G  R  *  C  C  A  E  I  F  S  P  S  K  R  Q  R  C  Y  V  D  I  P  K  A  S  N  I  I  *  G  S  H  L  L  Q  I  A  F  F  R  S  S  C  R  R  G  K  E  *  K  K  I  I  D  L  I  K  Y  *  *  R  I  V  I  L  V  F  V  L  F  F  F  S  L  C  R  V  R  E  N  E  L  R  K  K  Q  I  Q  Y  C  A  Q  V  *  T  N  R  F  N  V  Y  T  Q  V  E  I  H  I  F  C  T  I  L  M  F  I  L  N  I  T  G  S  F  P  N  F  I  E  M  F  M  L  I  E  R  M  C  Y  S  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48780" stop="48853"/>
                    <exon start="48941" stop="49052"/>
                    <exon start="49407" stop="49537"/>
                    <exon start="49745" stop="49793"/>
                    <exon start="49881" stop="49958"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VASNGAGDSQSQWLIDTLENSESKWCIAVGFHPLVVCEEDAPQTKLKHKFQSLHGLFLKYGVDAYISAPVCADNVEERHIAKSKTSIGRYKGPLLTKVNQNLPCSMGRVDGFLLHKASALEIVSYLVTLEGDVVQKFFLHQRGKDVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="53984" PGL_stop="53343"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53984" e_stop="53343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="53984" e_stop="53343" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53984" stop="53343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAACTCCACCTATTTGATGTTAGACACAGCGGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTAAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAGGGATTTGTTTACGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGGTAGTGGCATTTC</gDNA_template>
            <first_frame> R  M  *  *  D  V  V  F  R  C  A  Y  *  V  E  L  H  L  F  D  V  R  H  S  G  K  V  *  E  G  F  *  E  V  *  S  L  *  W  *  F  *  F  F  S  C  Y  *  C  L  *  R  W  K  Y  R  R  V  N  S  I  *  R  L  G  *  C  E  E  C  H  K  V  S  *  K  I  L  *  T  H  F  E  S  F  R  F  T  V  C  Y  L  *  C  S  F  *  R  Y  M  *  T  *  C  L  F  E  I  M  C  S  K  *  *  P  *  F  E  *  N  G  F  G  N  E  R  K  I  Q  E  I  L  G  D  S  *  K  N  E  Q  N  D  F  Y  C  F  C  F  G  S  S  Q  *  I  C  L  C  *  F  C  S  *  R  I  T  W  G  R  N  G  K  C  S  E  Y  E  S  R  G  L  L  E  G  F  V  Y  D  I  C  K  *  V  W  K  R  F  Q  K  S  T  I  F  I  *  L  I  *  F  F  W  *  W  H  F </first_frame>
            <second_frame>  E  C  D  K  M  L  S  L  D  V  P  T  R  W  N  S  T  Y  L  M  L  D  T  A  E  K  F  E  K  A  F  E  R  F  D  L  Y  D  G  N  F  N  S  F  L  A  T  D  V  C  E  D  G  S  I  A  G  S  I  Q  Y  E  D  W  A  N  V  R  N  V  T  K  F  L  E  K  F  Y  E  L  T  L  K  V  S  G  S  R  Y  V  T  C  N  V  H  F  E  D  I  C  K  L  D  A  Y  L  K  L  C  V  A  S  D  D  L  D  L  S  K  M  A  S  G  M  K  E  K  F  K  K  Y  W  G  T  P  E  K  M  N  K  M  I  F  I  A  S  V  L  D  P  R  N  K  F  V  Y  V  S  F  A  L  E  E  L  L  G  E  E  T  G  N  V  V  N  T  K  V  E  A  Y  L  R  D  L  F  T  I  Y  V  S  K  Y  G  K  G  S  K  S  Q  P  S  S  S  D  S  S  D  S  S  G  S  G  I   </second_frame>
            <third_frame>   N  V  I  R  C  C  L  *  M  C  L  L  G  G  T  P  P  I  *  C  *  T  Q  R  K  S  L  R  R  L  L  R  G  L  I  F  M  M  V  I  L  I  L  F  L  L  L  M  F  V  K  M  E  V  S  Q  G  Q  F  N  M  K  I  G  L  M  *  G  M  S  Q  S  F  L  K  N  F  M  N  S  L  *  K  F  Q  V  H  G  M  L  L  V  M  F  I  L  K  I  Y  V  N  L  M  L  I  *  N  Y  V  *  Q  V  M  T  L  I  *  V  K  W  L  R  E  *  K  K  N  S  R  N  I  G  G  L  L  K  K  *  T  K  *  F  L  L  L  L  F  W  I  L  A  I  N  L  S  M  L  V  L  L  L  K  N  Y  L  G  K  K  R  E  M  *  *  I  R  K  *  R  L  T  *  G  I  C  L  R  Y  M  *  V  S  M  E  K  V  P  K  V  N  H  L  H  L  T  H  L  I  L  L  V  V  A  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53983" stop="53345"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECDKMLSLDVPTRWNSTYLMLDTAEKFEKAFERFDLYDGNFNSFLATDVCEDGSIAGSIQYEDWANVRNVTKFLEKFYELTLKVSGSRYVTCNVHFEDICKLDAYLKLCVASDDLDLSKMASGMKEKFKKYWGTPEKMNKMIFIASVLDPRNKFVYVSFALEELLGEETGNVVNTKVEAYLRDLFTIYVSKYGKGSKSQPSSSDSSDSSGSGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="69832" PGL_stop="70096"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69832" e_stop="70096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="69832" e_stop="70096" e_length="265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69832" stop="70096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333048" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTGTATGTGTGAGAGTGTGTCTCTTTTTTCAGATAAAGCAGCAGCAAAAGCATTGAAAAGGGACAGTTAGTGGACTTACAGGGTCTCTGTTTAAATTGTCTCTTATAAATCAGAGTATTCTAGGGGAATTAGTAGCTTAGTAGGATGGTTGGCTTATGAATACCTGGACTTTCACCTTGTTGGTGAGGGTTCAATTCTCCACCTTGTAATCCCCTCCCCCTTTCCGCTTCGGCCCAGTTTTTTCAAAAAAAATAAAATAAAAT</gDNA_template>
            <first_frame> M  C  M  C  E  S  V  S  L  F  S  D  K  A  A  A  K  A  L  K  R  D  S  *  W  T  Y  R  V  S  V  *  I  V  S  Y  K  S  E  Y  S  R  G  I  S  S  L  V  G  W  L  A  Y  E  Y  L  D  F  H  L  V  G  E  G  S  I  L  H  L  V  I  P  S  P  F  P  L  R  P  S  F  F  K  K  N  K  I  K  </first_frame>
            <second_frame>  C  V  C  V  R  V  C  L  F  F  Q  I  K  Q  Q  Q  K  H  *  K  G  T  V  S  G  L  T  G  S  L  F  K  L  S  L  I  N  Q  S  I  L  G  E  L  V  A  *  *  D  G  W  L  M  N  T  W  T  F  T  L  L  V  R  V  Q  F  S  T  L  *  S  P  P  P  F  R  F  G  P  V  F  S  K  K  I  K  *  N </second_frame>
            <third_frame>   V  Y  V  *  E  C  V  S  F  F  R  *  S  S  S  K  S  I  E  K  G  Q  L  V  D  L  Q  G  L  C  L  N  C  L  L  *  I  R  V  F  *  G  N  *  *  L  S  R  M  V  G  L  *  I  P  G  L  S  P  C  W  *  G  F  N  S  P  P  C  N  P  L  P  L  S  A  S  A  Q  F  F  Q  K  K  *  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLe0072J06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="77112" PGL_stop="78303"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77112" e_stop="78303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="77112" e_stop="78303" e_length="1192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77112" stop="78303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321546" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTCACCCTAGTTTACTGCATTGAGAAAACCTGAACCGTATCTTGGCAGGGCGACTAGGTATGGCATCATTTGCAAACTGGTGTCTGCAGCCATGGCGTTGTCCTTTTCTCTTTGCATGTTCATGCACAACAAAATATAAGTCCTAAAGTCTGTGGTTAATATCTCAAAAGGTCACTCAACTGATGGGGATTGGCATGGCAGCTTTAAGGCTCCGTGAGATATGGGAACTATCTTACTGGACTATTAATGCTTGCAGCCATGCGCCCATGTCCATTGTTTAGCTTTTTGAATGACAAAAGGCAAATCTGAGCCTCCAAGTATATCTCTGTGTTCAGTAAATGAGGCATTTTATTGAACTCGAGAAAGGTAGTGATTTTCTGAGGGTGGTTATTCTCTTTTCTCTTAAGTTCAATTTAGCCAATGAAGTTTCCTATGCTTTTGTTAGACAGATATAGTTTAACAGCCCTCTCATCAGCAAAATGTTCTTGATGATGACGATGATTGCCATGGTTATGATAATAATAATATTAATAATAAGCAAAATTACGTTTCCCCCCTCAACTTTTCTAGAAAAACCCAAATCCTCAACCCTAAACTTTGTGATGAGGCTGTGATGATATTCTCCAGGAAGTTTGAAAATCAGATTTTTAAGCTGATTCATATCTTGGCTAGGCAAAGGCAGGGGAATTCATGAGGCTGGTTCTTACGTGCTCTGTCACACGTATCTGCTTTTTGCAGCCATGGTGAAGTAGCCCTTTTTTTCTGATTGATTTTCACTCAAAATCTGAGCCTCTTTTCTGTTTAAAGTTTTGGTTCTACAATATGTAGTCTTTTTTTTTCATCCTTCGTACTATCAGCACATATAGGAAGAGTCCCCTTTGAGAAATGAAACTTCCTATGTATCCCTCTATACAATTTCCATAGATTGTTAGGTACACTGAGATGAAATAAGTCCAAAGGGAATGGAAGTGGATATTTAGGATCCATATAATGTCTTTAAACAGTTTGATATTGAAGCTGGTTTTTGCTGCATTTATCTACACTACTCAAACTTTCATGCCTTTTTAGATCCTGAATGCACCAAGTTTTCCAAGGCAATGAAGATGTCATATTGAAAATGAAAATGTGAATAAGATGAGAGTTGATTCATGGCCTGGCTTGGCCAAGTCCAATTGGAAGGTCTTGTAAG</gDNA_template>
            <first_frame> *  F  T  L  V  Y  C  I  E  K  T  *  T  V  S  W  Q  G  D  *  V  W  H  H  L  Q  T  G  V  C  S  H  G  V  V  L  F  S  L  H  V  H  A  Q  Q  N  I  S  P  K  V  C  G  *  Y  L  K  R  S  L  N  *  W  G  L  A  W  Q  L  *  G  S  V  R  Y  G  N  Y  L  T  G  L  L  M  L  A  A  M  R  P  C  P  L  F  S  F  L  N  D  K  R  Q  I  *  A  S  K  Y  I  S  V  F  S  K  *  G  I  L  L  N  S  R  K  V  V  I  F  *  G  W  L  F  S  F  L  L  S  S  I  *  P  M  K  F  P  M  L  L  L  D  R  Y  S  L  T  A  L  S  S  A  K  C  S  *  *  *  R  *  L  P  W  L  *  *  *  *  Y  *  *  *  A  K  L  R  F  P  P  Q  L  F  *  K  N  P  N  P  Q  P  *  T  L  *  *  G  C  D  D  I  L  Q  E  V  *  K  S  D  F  *  A  D  S  Y  L  G  *  A  K  A  G  E  F  M  R  L  V  L  T  C  S  V  T  R  I  C  F  L  Q  P  W  *  S  S  P  F  F  L  I  D  F  H  S  K  S  E  P  L  F  C  L  K  F  W  F  Y  N  M  *  S  F  F  F  I  L  R  T  I  S  T  Y  R  K  S  P  L  *  E  M  K  L  P  M  Y  P  S  I  Q  F  P  *  I  V  R  Y  T  E  M  K  *  V  Q  R  E  W  K  W  I  F  R  I  H  I  M  S  L  N  S  L  I  L  K  L  V  F  A  A  F  I  Y  T  T  Q  T  F  M  P  F  *  I  L  N  A  P  S  F  P  R  Q  *  R  C  H  I  E  N  E  N  V  N  K  M  R  V  D  S  W  P  G  L  A  K  S  N  W  K  V  L  *  </first_frame>
            <second_frame>  N  S  P  *  F  T  A  L  R  K  P  E  P  Y  L  G  R  A  T  R  Y  G  I  I  C  K  L  V  S  A  A  M  A  L  S  F  S  L  C  M  F  M  H  N  K  I  *  V  L  K  S  V  V  N  I  S  K  G  H  S  T  D  G  D  W  H  G  S  F  K  A  P  *  D  M  G  T  I  L  L  D  Y  *  C  L  Q  P  C  A  H  V  H  C  L  A  F  *  M  T  K  G  K  S  E  P  P  S  I  S  L  C  S  V  N  E  A  F  Y  *  T  R  E  R  *  *  F  S  E  G  G  Y  S  L  F  S  *  V  Q  F  S  Q  *  S  F  L  C  F  C  *  T  D  I  V  *  Q  P  S  H  Q  Q  N  V  L  D  D  D  D  D  C  H  G  Y  D  N  N  N  I  N  N  K  Q  N  Y  V  S  P  L  N  F  S  R  K  T  Q  I  L  N  P  K  L  C  D  E  A  V  M  I  F  S  R  K  F  E  N  Q  I  F  K  L  I  H  I  L  A  R  Q  R  Q  G  N  S  *  G  W  F  L  R  A  L  S  H  V  S  A  F  C  S  H  G  E  V  A  L  F  F  *  L  I  F  T  Q  N  L  S  L  F  S  V  *  S  F  G  S  T  I  C  S  L  F  F  S  S  F  V  L  S  A  H  I  G  R  V  P  F  E  K  *  N  F  L  C  I  P  L  Y  N  F  H  R  L  L  G  T  L  R  *  N  K  S  K  G  N  G  S  G  Y  L  G  S  I  *  C  L  *  T  V  *  Y  *  S  W  F  L  L  H  L  S  T  L  L  K  L  S  C  L  F  R  S  *  M  H  Q  V  F  Q  G  N  E  D  V  I  L  K  M  K  M  *  I  R  *  E  L  I  H  G  L  A  W  P  S  P  I  G  R  S  C  K </second_frame>
            <third_frame>   I  H  P  S  L  L  H  *  E  N  L  N  R  I  L  A  G  R  L  G  M  A  S  F  A  N  W  C  L  Q  P  W  R  C  P  F  L  F  A  C  S  C  T  T  K  Y  K  S  *  S  L  W  L  I  S  Q  K  V  T  Q  L  M  G  I  G  M  A  A  L  R  L  R  E  I  W  E  L  S  Y  W  T  I  N  A  C  S  H  A  P  M  S  I  V  *  L  F  E  *  Q  K  A  N  L  S  L  Q  V  Y  L  C  V  Q  *  M  R  H  F  I  E  L  E  K  G  S  D  F  L  R  V  V  I  L  F  S  L  K  F  N  L  A  N  E  V  S  Y  A  F  V  R  Q  I  *  F  N  S  P  L  I  S  K  M  F  L  M  M  T  M  I  A  M  V  M  I  I  I  I  L  I  I  S  K  I  T  F  P  P  S  T  F  L  E  K  P  K  S  S  T  L  N  F  V  M  R  L  *  *  Y  S  P  G  S  L  K  I  R  F  L  S  *  F  I  S  W  L  G  K  G  R  G  I  H  E  A  G  S  Y  V  L  C  H  T  Y  L  L  F  A  A  M  V  K  *  P  F  F  S  D  *  F  S  L  K  I  *  A  S  F  L  F  K  V  L  V  L  Q  Y  V  V  F  F  F  H  P  S  Y  Y  Q  H  I  *  E  E  S  P  L  R  N  E  T  S  Y  V  S  L  Y  T  I  S  I  D  C  *  V  H  *  D  E  I  S  P  K  G  M  E  V  D  I  *  D  P  Y  N  V  F  K  Q  F  D  I  E  A  G  F  C  C  I  Y  L  H  Y  S  N  F  H  A  F  L  D  P  E  C  T  K  F  S  K  A  M  K  M  S  Y  *  K  *  K  C  E  *  D  E  S  *  F  M  A  W  L  G  Q  V  Q  L  E  G  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77575" stop="77808"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPSHQQNVLDDDDDCHGYDNNNINNKQNYVSPLNFSRKTQILNPKLCDEAVMIFSRKFENQIFKLIHILARQRQGNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="78548" PGL_stop="79462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78548" e_stop="78751"/>
            <exon e_start="78997" e_stop="79462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.916" e_score="0.995"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="78548" e_stop="78751" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.916">
            <gDNA_intron_boundary i_start="78752" i_stop="78996" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="78997" e_stop="79462" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78548" stop="78751"/>
              <exon start="78997" stop="79462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTGAATCCGTACCTAAACATGAGTATGTCAGCTAACAGTCCGTTCTACAGTTCTTGTCGCGTCTGGCATTCTTTTCAGGTGAACAATGTTGCATTTCATCTTTGCTGGGTGGCGGACCGGTGTCATTTCAATTGTTGGTGGTACTGATGGTAAAGATTGCTGGCTTTGGTTGAATGAAAATTGGATCCGCCCTCATGAAAAG : TACAAGGAAAAACCAGCTTATATTGAACCTGAGGATGAAGTGTAGACGCCAGTCGGTGACAGAAGAGAATGTAGCTTCAAGAATGAGGCAAGCCCACCCACCCCTCGTGTTGTCGCTGAGCATTGCCAGGGGCCACAACGCCTGTGTATCACATTGCCTCAGCTTCCCTACTTTGCATGAGACCTCAATGATGCAATTCTCTGGTTCTGGCTACTGAAGTTCTGAGATAATGCTTTGTTCTTTAAAATGTTAGCATTTGCTATCAAATGCACCATGTTTGTATTTTTCTTACCCAAGAATGTTTATTAATATGGACAATATTTCTGTTGACAAATTTTGTGCTTTCTTTGACACCAAAGTTTTCATTTTTATCCTCTTGTAATTGCAGCATCAAATTTGGAATATTGTACTATTTGCATTTGATAGTATGTTATATATACTCTATCGTTTCAATTTATTTATCAGA</gDNA_template>
            <first_frame> R  *  I  R  T  *  T  *  V  C  Q  L  T  V  R  S  T  V  L  V  A  S  G  I  L  F  R  *  T  M  L  H  F  I  F  A  G  W  R  T  G  V  I  S  I  V  G  G  T  D  G  K  D  C  W  L  W  L  N  E  N  W  I  R  P  H  E  K  :  Y  K  E  K  P  A  Y  I  E  P  E  D  E  V  *  T  P  V  G  D  R  R  E  C  S  F  K  N  E  A  S  P  P  T  P  R  V  V  A  E  H  C  Q  G  P  Q  R  L  C  I  T  L  P  Q  L  P  Y  F  A  *  D  L  N  D  A  I  L  W  F  W  L  L  K  F  *  D  N  A  L  F  F  K  M  L  A  F  A  I  K  C  T  M  F  V  F  F  L  P  K  N  V  Y  *  Y  G  Q  Y  F  C  *  Q  I  L  C  F  L  *  H  Q  S  F  H  F  Y  P  L  V  I  A  A  S  N  L  E  Y  C  T  I  C  I  *  *  Y  V  I  Y  T  L  S  F  Q  F  I  Y  Q  </first_frame>
            <second_frame>  G  E  S  V  P  K  H  E  Y  V  S  *  Q  S  V  L  Q  F  L  S  R  L  A  F  F  S  G  E  Q  C  C  I  S  S  L  L  G  G  G  P  V  S  F  Q  L  L  V  V  L  M  V  K  I  A  G  F  G  *  M  K  I  G  S  A  L  M  K  S :   T  R  K  N  Q  L  I  L  N  L  R  M  K  C  R  R  Q  S  V  T  E  E  N  V  A  S  R  M  R  Q  A  H  P  P  L  V  L  S  L  S  I  A  R  G  H  N  A  C  V  S  H  C  L  S  F  P  T  L  H  E  T  S  M  M  Q  F  S  G  S  G  Y  *  S  S  E  I  M  L  C  S  L  K  C  *  H  L  L  S  N  A  P  C  L  Y  F  S  Y  P  R  M  F  I  N  M  D  N  I  S  V  D  K  F  C  A  F  F  D  T  K  V  F  I  F  I  L  L  *  L  Q  H  Q  I  W  N  I  V  L  F  A  F  D  S  M  L  Y  I  L  Y  R  F  N  L  F  I  R </second_frame>
            <third_frame>   V  N  P  Y  L  N  M  S  M  S  A  N  S  P  F  Y  S  S  C  R  V  W  H  S  F  Q  V  N  N  V  A  F  H  L  C  W  V  A  D  R  C  H  F  N  C  W  W  Y  *  W  *  R  L  L  A  L  V  E  *  K  L  D  P  P  S  *  K   : V  Q  G  K  T  S  L  Y  *  T  *  G  *  S  V  D  A  S  R  *  Q  K  R  M  *  L  Q  E  *  G  K  P  T  H  P  S  C  C  R  *  A  L  P  G  A  T  T  P  V  Y  H  I  A  S  A  S  L  L  C  M  R  P  Q  *  C  N  S  L  V  L  A  T  E  V  L  R  *  C  F  V  L  *  N  V  S  I  C  Y  Q  M  H  H  V  C  I  F  L  T  Q  E  C  L  L  I  W  T  I  F  L  L  T  N  F  V  L  S  L  T  P  K  F  S  F  L  S  S  C  N  C  S  I  K  F  G  I  L  Y  Y  L  H  L  I  V  C  Y  I  Y  S  I  V  S  I  Y  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78723" stop="78751"/>
                    <exon start="78997" stop="79213"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKIGSALMKSTRKNQLILNLRMKCRRQSVTEENVASRMRQAHPPLVLSLSIARGHNACVSHCLSFPTLHETSMMQFSGSGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79242" stop="79460"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVSICYQMHHVCIFLTQECLLIWTIFLLTNFVLSLTPKFSFLSSCNCSIKFGILYYLHLIVCYIYSIVSIYLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="83065" PGL_stop="83892"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83065" e_stop="83892"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="83065" e_stop="83892" e_length="828"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83065" stop="83892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAG</gDNA_template>
            <first_frame> V  K  S  C  L  V  T  E  S  F  N  M  L  V  F  L  S  L  L  C  *  L  L  S  L  V  I  S  L  K  S  S  I  K  S  L  I  L  L  V  L  Q  A  C  D  T  L  F  A  *  T  N  Y  I  V  C  G  I  S  V  C  C  L  C  *  I  S  *  M  I  L  A  L  S  M  F  I  P  L  D  I  I  *  S  F  C  F  P  K  I  L  D  V  S  L  T  T  L  N  A  L  L  I  R  F  V  E  N  H  I  C  L  P  F  S  S  S  S  Y  *  N  E  Y  R  L  L  I  K  H  *  A  L  F  L  P  Y  P  I  L  K  L  L  F  H  V  N  *  R  S  Q  *  Y  I  *  L  H  R  L  P  I  L  F  Q  A  F  C  L  L  V  Y  Q  M  C  I  F  F  I  R  L  W  C  L  G  Q  V  F  T  H  V  N  *  Y  L  P  L  T  K  A  W  T  S  R  K  K  S  P  S  V  F  A  C  F  F  Q  W  I  L  V  F  R  L  N  K  M  Y  F  V  G  R  Y  *  V  G  K  H  V  L  T  M  R  F  T  T  S  L  L  R  R  L  K  K  K  A  T  T  *  V  S  S  T  R  R  H  N  L  I  P  H  Q  I  V  K  I  A  P  K </first_frame>
            <second_frame>  *  N  H  V  *  *  P  S  P  S  T  C  *  F  F  C  H  C  Y  V  D  C  S  H  L  *  F  P  *  R  V  L  S  S  L  *  Y  F  *  F  F  K  P  V  I  P  Y  L  H  E  P  I  I  *  F  V  V  S  Q  F  V  V  Y  V  K  F  H  E  *  S  S  R  *  A  C  S  F  H  *  I  *  F  E  A  F  A  F  L  R  S  S  T  C  H  *  R  H  *  T  L  C  *  L  D  L  *  K  T  I  F  V  Y  L  S  L  P  L  R  I  E  M  N  I  V  Y  *  *  N  I  R  H  Y  S  F  H  T  Q  F  *  N  F  C  F  M  *  T  K  E  V  N  S  I  F  S  Y  T  D  S  L  F  Y  F  K  P  S  V  C  W  S  I  K  C  A  F  F  L  F  D  C  G  V  L  A  K  F  S  R  T  S  I  S  T  S  L  S  L  R  L  G  Q  V  E  R  N  H  L  V  F  L  H  V  F  S  N  G  F  L  F  F  V  L  T  K  C  I  L  L  A  D  I  K  *  A  N  T  S  *  R  *  D  L  Q  P  A  C  *  E  G  *  R  R  R  L  R  R  E  *  A  P  Q  D  A  T  I  *  F  P  T  R  *  *  R  *  P  Q   </second_frame>
            <third_frame>   E  I  M  S  S  D  R  V  L  Q  H  A  S  F  S  V  I  V  M  L  T  A  L  T  C  N  F  L  E  E  F  Y  Q  V  F  N  T  F  S  S  S  S  L  *  Y  L  I  C  M  N  Q  L  Y  S  L  W  Y  L  S  L  L  F  M  L  N  F  M  N  D  P  R  V  E  H  V  H  S  I  R  Y  N  L  K  L  L  L  S  *  D  P  R  R  V  I  D  D  I  K  R  S  A  D  *  I  C  R  K  P  Y  L  S  T  F  L  F  L  F  V  L  K  *  I  S  F  T  N  K  T  L  G  I  I  P  S  I  P  N  S  E  T  F  V  S  C  K  L  K  K  S  I  V  Y  L  V  T  Q  T  P  Y  F  I  S  S  L  L  F  V  G  L  S  N  V  H  F  F  Y  S  T  V  V  S  W  P  S  F  H  A  R  Q  L  V  P  P  S  H  *  G  L  D  K  S  K  E  I  T  *  C  F  C  M  F  F  P  M  D  S  C  F  S  S  *  Q  N  V  F  C  W  Q  I  L  S  R  Q  T  R  L  D  D  E  I  Y  N  Q  L  V  E  K  A  K  E  E  G  Y  D  V  S  K  L  H  K  T  P  Q  S  D  S  P  P  D  S  E  D  S  P  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83501" stop="83761"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKEVNSIFSYTDSLFYFKPSVCWSIKCAFFLFDCGVLAKFSRTSISTSLSLRLGQVERNHLVFLHVFSNGFLFFVLTKCILLADIK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83430" stop="83654"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISFTNKTLGIIPSIPNSETFVSCKLKKSIVYLVTQTPYFISSLLFVGLSNVHFFYSTVVSWPSFHARQLVPPSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="96090" PGL_stop="93619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96090" e_stop="95170"/>
            <exon e_start="93856" e_stop="93619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96090" e_stop="95170" e_length="921"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="95169" i_stop="93857" i_length="1313"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93856" e_stop="93619" e_length="238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96090" stop="95170"/>
              <exon start="93856" stop="93619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323197" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAG : GATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTCAACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTA</gDNA_template>
            <first_frame> G  I  P  A  S  L  E  L  D  Q  L  Q  Q  S  K  C  A  T  H  I  G  E  L  N  P  L  D  E  S  G  L  H  T  V  A  S  T  F  T  N  S  R  L  V  G  S  A  N  S  S  M  P  N  V  S  N  N  P  I  L  L  Q  V  N  S  Q  Q  P  L  T  G  M  G  F  G  N  Q  T  S  L  N  V  A  S  F  S  S  E  A  F  N  T  G  V  S  G  S  S  N  F  L  D  H  D  R  Y  S  N  E  N  W  Q  T  S  L  Q  P  L  K  F  Q  S  T  S  F  P  L  N  E  P  F  S  N  S  H  L  P  Q  D  R  V  R  D  N  D  T  S  T  G  P  H  L  Q  N  N  P  V  D  F  S  T  S  T  I  V  S  V  P  F  E  A  S  R  G  E  T  Q  C  R  E  S  L  G  A  A  V  Q  I  M  N  Q  A  T  C  Q  R  W  P  D  Q  N  Q  H  Y  S  H  N  S  N  N  I  F  G  N  M  S  S  Q  V  S  S  N  G  G  M  A  S  L  T  H  P  V  D  Q  N  N  D  M  F  C  T  R  V  E  T  S  L  N  C  I  S  N  G  S  S  S  M  H  T  H  N  R  E  S  E  K  L  T  H  D  S  R  T  K  T  N  E  D  Y  L  F  Q  T  T  K  Q  Q  V  G  F  L  P  Q  G  Y  G  S  L  D  D  L  M  G  E  M  K  Q  :  D  Q  D  G  A  M  L  D  G  G  E  F  G  F  D  A  Y  S  L  G  S  G  L  *  G  F  C  N  *  Q  V  R  K  E  R  I  *  *  Y  S  K  I  L  F  A  H  L  R  V  S  T  T  Y  A  Y  Y  A  F  F  F  I  V  I  F  L  S  R  N  G  V  I  D  R  R  K  L  L  N  A  </first_frame>
            <second_frame>  G  F  L  H  L  W  S  L  I  N  C  S  R  A  S  V  P  H  T  *  E  S  *  I  L  W  M  S  Q  D  C  I  Q  W  P  V  H  S  R  T  L  D  W  L  V  A  Q  T  A  L  C  P  M  Y  Q  I  I  L  F  C  F  K  *  I  P  S  N  H  *  R  G  W  D  L  E  I  R  L  L  S  T  *  P  L  L  A  L  R  P  S  I  L  V  *  V  V  L  P  I  F  W  T  M  I  D  I  L  T  R  I  G  K  L  L  S  S  L  *  S  S  S  Q  P  P  F  R  *  M  N  L  S  A  T  A  I  C  L  K  T  E  Y  E  T  M  I  L  Q  L  A  L  I  C  R  T  I  L  L  I  F  Q  P  P  P  *  F  P  Y  L  S  K  L  Q  E  E  K  H  N  A  V  K  V  *  G  L  L  F  R  L  *  T  K  Q  P  A  N  G  G  Q  I  R  T  N  I  I  P  T  I  Q  T  I  F  L  V  T  *  A  L  K  F  L  A  M  V  E  W  P  L  *  L  I  L  W  T  K  T  M  I  C  S  A  Q  G  W  R  L  L  *  T  A  Y  Q  M  V  V  L  Q  C  T  H  T  I  V  K  V  K  N  *  L  M  T  R  G  Q  K  Q  M  K  T  T  S  S  R  Q  Q  S  N  K  L  V  F  F  L  R  A  M  A  P  L  M  I  L  W  V  K  *  N  R :   I  K  M  E  P  C  *  T  E  E  N  S  D  L  M  L  I  H  L  V  Q  V  Y  E  V  F  V  T  S  K  L  G  R  R  G  S  S  D  I  A  K  F  Y  L  L  I  *  E  S  Q  Q  H  M  H  T  M  P  S  F  S  L  L  F  S  C  P  G  T  V  L  S  I  V  E  N  S  *  T  L </second_frame>
            <third_frame>   D  S  C  I  F  G  A  *  S  T  A  A  E  Q  V  C  H  T  H  R  R  V  E  S  F  G  *  V  R  T  A  Y  S  G  Q  Y  I  H  E  L  *  I  G  W  *  R  K  Q  L  Y  A  Q  C  I  K  *  S  Y  F  A  S  S  K  F  P  A  T  T  D  G  D  G  I  W  K  S  D  F  S  Q  R  S  L  F  *  L  *  G  L  Q  Y  W  C  K  W  F  F  Q  F  S  G  P  *  *  I  F  *  R  E  L  A  N  F  S  P  A  S  E  V  P  V  N  L  L  S  V  K  *  T  F  Q  Q  Q  P  F  A  S  R  Q  S  T  R  Q  *  Y  F  N  W  P  S  F  A  E  Q  S  C  *  F  F  N  L  H  H  S  F  R  T  F  R  S  F  K  R  R  N  T  M  P  *  K  F  R  G  C  C  S  D  Y  E  P  S  N  L  P  T  V  A  R  S  E  P  T  L  F  P  Q  F  K  Q  Y  F  W  *  H  E  L  S  S  F  *  Q  W  W  N  G  L  F  N  S  S  C  G  P  K  Q  *  Y  V  L  H  K  G  G  D  F  F  E  L  H  I  K  W  *  F  F  N  A  H  T  Q  S  *  K  *  K  I  N  S  *  L  E  D  K  N  K  *  R  L  P  L  P  D  N  K  A  T  S  W  F  S  S  S  G  L  W  L  P  *  *  S  Y  G  *  N  E  T   : G  S  R  W  S  H  V  R  R  R  R  I  R  I  *  C  L  F  T  W  F  R  F  M  R  F  L  *  L  A  S  *  E  G  E  D  L  V  I  *  Q  N  F  I  C  S  F  K  S  L  N  N  I  C  I  L  C  L  L  F  H  C  Y  F  P  V  Q  E  R  C  Y  R  S  *  K  T  L  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96090" stop="95170"/>
                    <exon start="93856" stop="93785"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIPASLELDQLQQSKCATHIGELNPLDESGLHTVASTFTNSRLVGSANSSMPNVSNNPILLQVNSQQPLTGMGFGNQTSLNVASFSSEAFNTGVSGSSNFLDHDRYSNENWQTSLQPLKFQSTSFPLNEPFSNSHLPQDRVRDNDTSTGPHLQNNPVDFSTSTIVSVPFEASRGETQCRESLGAAVQIMNQATCQRWPDQNQHYSHNSNNIFGNMSSQVSSNGGMASLTHPVDQNNDMFCTRVETSLNCISNGSSSMHTHNRESEKLTHDSRTKTNEDYLFQTTKQQVGFLPQGYGSLDDLMGEMKQDQDGAMLDGGEFGFDAYSLGSGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="99083" PGL_stop="97025"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99083" e_stop="98963"/>
            <exon e_start="97908" e_stop="97756"/>
            <exon e_start="97584" e_stop="97192"/>
            <exon e_start="97086" e_stop="97025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.699" acc_prob="0.993" e_score="0.959"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.991" e_score="0.992"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="99083" e_stop="98963" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.699" acc_prob="0.993">
            <gDNA_intron_boundary i_start="98962" i_stop="97909" i_length="1054"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97908" e_stop="97756" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="97755" i_stop="97585" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="97584" e_stop="97192" e_length="393"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.991">
            <gDNA_intron_boundary i_start="97191" i_stop="97087" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.935">
            <gDNA_exon_boundary e_start="97086" e_stop="97025" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99083" stop="98963"/>
              <exon start="97908" stop="97756"/>
              <exon start="97584" stop="97192"/>
              <exon start="97086" stop="97025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGGTGGTGAAAGGGAAAACTATGATAATTTTCCAGTTGGTATGAGGGTTCTTGCTGTTGATGATGACCCAATTTGTTTGAAGTTGTTGGATGGACTGCTTAGGAAATGCCAGTATCACG : TTACTACGACGAGTCAGGCAAGATCGGCGTTGAAGATGTTGAGGGAAAACAAAGATAGATTTGACTTGGTGATCAGTGATGTCCACATGCCTGATATGGATGGCTTTAAACTTCTGGAGCTTGTTGGTCTCGAGATGGATCTTCCCGTCATAA : TGTTGTCAGCAAACAGTGATAGCAAACTTGTAATGAAGGGAATAACTCACGGTGCTTGTGACTATTTGGTGAAGCCTGTCCGGCTTGAGGAGCTAAAGAATATATGGCAACATGTAATAAGGAGAAAGAAAGTTGAGCCTAAGAAGCAAAACAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGAGGAGAAGGCGAAAGAGGATCACAGGTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAATATGAAAGCGATGAAAATGGAAATGATGATGAAGATCCCGGAACTCAGAAGAAACCTCGTGTAGTTTGGGCTATAGAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGGCCTTGAAA : AAGCTGTGCCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAGAATGTG</gDNA_template>
            <first_frame> M  G  G  E  R  E  N  Y  D  N  F  P  V  G  M  R  V  L  A  V  D  D  D  P  I  C  L  K  L  L  D  G  L  L  R  K  C  Q  Y  H   : V  T  T  T  S  Q  A  R  S  A  L  K  M  L  R  E  N  K  D  R  F  D  L  V  I  S  D  V  H  M  P  D  M  D  G  F  K  L  L  E  L  V  G  L  E  M  D  L  P  V  I   : M  L  S  A  N  S  D  S  K  L  V  M  K  G  I  T  H  G  A  C  D  Y  L  V  K  P  V  R  L  E  E  L  K  N  I  W  Q  H  V  I  R  R  K  K  V  E  P  K  K  Q  N  K  S  D  D  Q  D  K  A  H  Q  G  G  G  E  G  E  R  G  S  Q  V  S  G  N  A  D  Q  N  G  K  V  N  K  K  R  K  D  E  E  Y  E  S  D  E  N  G  N  D  D  E  D  P  G  T  Q  K  K  P  R  V  V  W  A  I  E  L  H  K  K  F  V  T  A  V  H  Q  L  G  L  E   : K  A  V  P  K  R  I  L  D  L  M  N  V  E  G  L  T  R  E  N  V </first_frame>
            <second_frame>  W  V  V  K  G  K  T  M  I  I  F  Q  L  V  *  G  F  L  L  L  M  M  T  Q  F  V  *  S  C  W  M  D  C  L  G  N  A  S  I  T  :  L  L  R  R  V  R  Q  D  R  R  *  R  C  *  G  K  T  K  I  D  L  T  W  *  S  V  M  S  T  C  L  I  W  M  A  L  N  F  W  S  L  L  V  S  R  W  I  F  P  S  *  :  C  C  Q  Q  T  V  I  A  N  L  *  *  R  E  *  L  T  V  L  V  T  I  W  *  S  L  S  G  L  R  S  *  R  I  Y  G  N  M  *  *  G  E  R  K  L  S  L  R  S  K  T  S  L  M  I  K  T  R  L  T  R  E  E  E  K  A  K  E  D  H  R  F  Q  V  M  Q  I  K  T  G  R  L  T  R  K  G  R  M  K  N  M  K  A  M  K  M  E  M  M  M  K  I  P  E  L  R  R  N  L  V  *  F  G  L  *  S  F  T  R  S  L  L  Q  Q  F  I  S  *  A  L  K  :  K  L  C  L  R  G  F  L  I  *  *  M  L  K  D  L  Q  E  R  M   </second_frame>
            <third_frame>   G  W  *  K  G  K  L  *  *  F  S  S  W  Y  E  G  S  C  C  *  *  *  P  N  L  F  E  V  V  G  W  T  A  *  E  M  P  V  S  R :   Y  Y  D  E  S  G  K  I  G  V  E  D  V  E  G  K  Q  R  *  I  *  L  G  D  Q  *  C  P  H  A  *  Y  G  W  L  *  T  S  G  A  C  W  S  R  D  G  S  S  R  H  N :   V  V  S  K  Q  *  *  Q  T  C  N  E  G  N  N  S  R  C  L  *  L  F  G  E  A  C  P  A  *  G  A  K  E  Y  M  A  T  C  N  K  E  K  E  S  *  A  *  E  A  K  Q  V  *  *  S  R  Q  G  S  P  G  R  R  R  R  R  K  R  I  T  G  F  R  *  C  R  S  K  R  E  G  *  Q  E  K  E  G  *  R  I  *  K  R  *  K  W  K  *  *  *  R  S  R  N  S  E  E  T  S  C  S  L  G  Y  R  A  S  Q  E  V  C  Y  S  S  S  S  V  R  P  *  K :   S  C  A  *  E  D  S  *  S  D  E  C  *  R  T  Y  K  R  E  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99083" stop="98963"/>
                    <exon start="97908" stop="97756"/>
                    <exon start="97584" stop="97192"/>
                    <exon start="97086" stop="97025"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGGERENYDNFPVGMRVLAVDDDPICLKLLDGLLRKCQYHVTTTSQARSALKMLRENKDRFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANSDSKLVMKGITHGACDYLVKPVRLEELKNIWQHVIRRKKVEPKKQNKSDDQDKAHQGGGEGERGSQVSGNADQNGKVNKKRKDEEYESDENGNDDEDPGTQKKPRVVWAIELHKKFVTAVHQLGLEKAVPKRILDLMNVEGLTRENV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="111274" PGL_stop="105132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111274" e_stop="111222"/>
            <exon e_start="111136" e_stop="111033"/>
            <exon e_start="110943" e_stop="110732"/>
            <exon e_start="108734" e_stop="108705"/>
            <exon e_start="107542" e_stop="107494"/>
            <exon e_start="105231" e_stop="105132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.800"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.735"/>
          <exon-only e_score="0.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111274" e_stop="111222" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111221" i_stop="111137" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111136" e_stop="111033" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111032" i_stop="110944" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110943" e_stop="110732" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110731" i_stop="108735" i_length="1997"/>
          </intron>
          <exon e_serial="4" e_score="0.800">
            <gDNA_exon_boundary e_start="108734" e_stop="108705" e_length="30"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108704" i_stop="107543" i_length="1162"/>
          </intron>
          <exon e_serial="5" e_score="0.735">
            <gDNA_exon_boundary e_start="107542" e_stop="107494" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107493" i_stop="105232" i_length="2262"/>
          </intron>
          <exon e_serial="6" e_score="0.000">
            <gDNA_exon_boundary e_start="105231" e_stop="105132" e_length="100"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111274" stop="111222"/>
              <exon start="111136" stop="111033"/>
              <exon start="110943" stop="110732"/>
              <exon start="108734" stop="108705"/>
              <exon start="107542" stop="107494"/>
              <exon start="105231" stop="105132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321283" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG : CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG : GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTA : AAAAAATTAAAAACATTAAACAAAAAAAAA : TAATAAAAAAATTATATCTAAAAAAAAAAATAACAAGAAAAATAAATCC : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> G  F  N  Q  H  Q  S  L  S  A  G  N  L  Q  Q  Q  K  C :   L  R  T  S  H  S  *  L  R  R  S  *  R  R  S  R  G  R  T  G  Q  F  L  T  G  S  V  *  G  L  I  T  Q  S   : G  T  M  L  S  V  D  T  G  V  G  P  S  *  D  F  K  V  E  E  S  C  F  I  *  V  F  N  G  K  T  S  R  I  M  F  Y  F  R  V  Q  *  E  L  I  C  *  G  N  R  L  C  F  *  F  W  K  R  F  I  Y  *  *  P  I  M  K  S  F  C  L  :  K  K  L  K  T  L  N  K  K  K  :  *  *  K  N  Y  I  *  K  K  K  *  Q  E  K  *  I   : L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  V  S  I  S  I  R  A  *  A  P  G  I  S  N  S  K  N   : A  F  A  Q  V  I  H  D  *  E  E  A  S  E  E  A  E  A  E  Q  A  N  S  L  L  D  P  Y  E  D  *  *  H  N  Q  :  V  Q  C  *  A  *  T  L  A  *  D  Q  A  R  I  L  R  W  K  N  R  V  L  F  K  F  L  M  E  K  L  L  G  L  C  F  I  F  E  F  N  R  S  S  F  A  E  E  T  D  C  A  F  N  F  G  R  D  L  Y  I  N  D  R  L  *  S  R  F  V  * :   K  N  *  K  H  *  T  K  K  N :   N  K  K  I  I  S  K  K  K  N  N  K  K  N  K  S  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   F  Q  S  A  S  E  L  K  R  R  E  S  P  T  A  K  M  :  P  S  H  K  S  F  M  I  K  K  K  L  A  K  K  Q  R  Q  N  R  P  I  P  Y  W  I  R  M  R  T  D  N  T  I  R :   Y  N  A  K  R  R  H  W  R  R  T  K  L  G  F  *  G  G  R  I  V  F  Y  L  S  F  *  W  K  N  F  S  D  Y  V  L  F  S  S  S  I  G  A  H  L  L  R  K  Q  T  V  L  L  I  L  E  E  I  Y  I  L  M  T  D  Y  E  V  V  L  F   : K  K  I  K  N  I  K  Q  K  K   : I  I  K  K  L  Y  L  K  K  K  I  T  R  K  I  N  P :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110861" stop="110732"/>
                    <exon start="108734" stop="108705"/>
                    <exon start="107542" stop="107494"/>
                    <exon start="105231" stop="105132"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WKNFSDYVLFSSSIGAHLLRKQTVLLILEEIYILMTDYEVVLFKKIKNIKQKKIIKKLYLKKKITRKINPFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111272" stop="111222"/>
                    <exon start="111136" stop="111033"/>
                    <exon start="110943" stop="110895"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQSASELKRRESPTAKMPSHKSFMIKKKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="115051" PGL_stop="111924"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115051" e_stop="114984"/>
            <exon e_start="112517" e_stop="111924"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115051" e_stop="114984" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="114983" i_stop="112518" i_length="2466"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112517" e_stop="111924" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115051" stop="114984"/>
              <exon start="112517" stop="111924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGAGTCATTTCTCTGCAGCTAAACCCCTGCGGCTTTAGGTTCCAGAAACTTCGCTCATCGATTCAG : GTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCTAATCGACTTCCGATCTAGTTTCTTTTGGGT</gDNA_template>
            <first_frame> L  E  S  F  L  C  S  *  T  P  A  A  L  G  S  R  N  F  A  H  R  F  R :   L  R  R  H  C  *  K  Y  G  Q  A  S  S  R  F  D  H  V  P  E  A  A  R  N  S  Y  R  S  T  L  *  E  M  *  W  E  V  C  D  L  *  F  I  R  P  A  L  H  T  C  P  S  L  *  *  M  Q  L  W  I  L  S  R  P  L  C  H  L  W  W  C  W  Y  L  *  C  L  L  L  Q  G  V  Y  S  A  G  E  R  *  G  W  L  S  K  D  S  Q  S  W  *  C  Q  D  R  S  V  L  *  T  *  K  I  W  F  Q  E  E  M  R  G  S  D  T  S  F  T  L  R  *  S  S  L  L  E  F  C  T  S  I  I  V  S  K  L  G  I  *  V  *  P  M  Y  L  L  T  I  L  P  C  N  L  L  Y  Y  I  L  I  S  Q  V  *  P  I  V  I  S  F  C  A  R  V  C  N  K  M  P  T  L  I  D  F  R  S  S  F  F  W   </first_frame>
            <second_frame>  S  S  H  F  S  A  A  K  P  L  R  L  *  V  P  E  T  S  L  I  D  S   : G  *  D  V  T  A  R  N  M  A  K  H  H  P  D  L  I  M  C  R  K  Q  P  G  I  A  I  G  R  L  C  E  K  C  D  G  K  C  V  I  C  D  S  Y  V  R  P  C  T  L  V  R  V  C  D  E  C  N  Y  G  S  F  Q  G  R  C  V  I  C  G  G  V  G  I  S  D  A  Y  Y  C  K  E  C  T  Q  Q  E  K  D  R  D  G  C  P  K  I  V  N  L  G  S  A  K  T  D  L  F  Y  E  R  K  K  Y  G  F  K  K  R  *  E  G  R  I  P  L  S  P  F  G  E  V  H  Y  W  N  F  V  L  A  *  L  C  Q  N  *  A  F  E  Y  S  L  C  T  Y  S  L  Y  C  L  A  T  C  C  I  T  Y  *  Y  H  K  F  N  P  L  *  F  R  F  V  Q  G  Y  A  T  K  C  Q  R  *  S  T  S  D  L  V  S  F  G  </second_frame>
            <third_frame>   R  V  I  S  L  Q  L  N  P  C  G  F  R  F  Q  K  L  R  S  S  I  Q  :  V  K  T  S  L  L  E  I  W  P  S  I  I  P  I  *  S  C  A  G  S  S  Q  E  *  L  S  V  D  F  V  R  N  V  M  G  S  V  *  F  V  I  H  T  S  G  L  A  H  L  S  E  F  V  M  N  A  T  M  D  P  F  K  A  V  V  S  S  V  V  V  L  V  S  L  M  L  T  I  A  R  S  V  L  S  R  R  K  I  G  M  A  V  Q  R  *  S  I  L  V  V  P  R  P  I  C  F  M  N  V  K  N  M  V  S  R  R  D  E  R  V  G  Y  L  F  H  P  S  V  K  F  T  T  G  I  L  Y  *  H  N  C  V  K  I  R  H  L  S  I  A  Y  V  L  T  H  Y  I  A  L  Q  L  A  V  L  H  T  D  I  T  S  L  T  H  C  N  F  V  L  C  K  G  M  Q  Q  N  A  N  A  N  R  L  P  I  *  F  L  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112512" stop="112162"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVTARNMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 40 chains have been computed
$ 
$ memory statistics:
$ 46240 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2568 bytes was the average size of a spliced alignment
$ 24528 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1533 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 52 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-10 21:01:11
-->
