<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-10 21:01:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-QPXgqi/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/sgn_marker_seqs" ref_id="SGN-M6933" ref_strand="+" ref_description="SGN-M6933 C2_At1g63270 [cosii_markers]">
      <seq>gcacgagccggcaaccaactttgttctgagaaaatacttcattgctagctgtagctcgacggacggcggtaagcagaacggccggaggtgattccatttgctgtagaaaatcacaaaatccaagcaagattagaaagagcatcagcctcaaacaaggaagtactatatctactactaatcttggtccttcattcacttgagatgtctttgtgtagacctccacttcctcgacttctgctgaataacgtctcgtgtatgagaaatgctcaacaaattttgcgccacataaatgtttccctccatgatggtggtgcactggtactaacaggcaccaatggctctggtaaatccacattcttgcgcatgttggctggtttctcaaaaccatcagctggtgagatactctggaatggccatgacattactgattcaggtgtttttcaacagtacaaacttcaactcaattggctgtctcttaaggacgccatcaaagagaagttcacggtccttgacaatgttcaatggtttgaagttcttgaaggcaagcaagggaagtcgctgccagctttggaacttatggggcttggaagattagtaaacgataaagcacggatgctttctatgggtcaaaggaaaagggtacagctcgccagattgttagcaattgatcgacctatttggttgcttgatgaaccttcagtagcattggatgacgaaggtgtgaaattgctagagtatattattgcagagcacaggaaaaaaggtggtattgtcattgtcgccacccatctgcctattcagatcgaggatgcaatgtttttaaggttgccaccaaggttccctagaaggatgactttagtagacatgcttgatagaggcggcctcgactgatcattaagaagataaagagtccaatctaaagaagctctccaatgaattcaaaagggagctgttttctctttcattcttgatgattgcaagaatttctctatctttactttgttagctcctcctcaatttgcacttcactttgcccctaaaatgtgctgagaacacatgccctcattggtctaatggtatgaacggcaacattggatgtgtggattagacgaatgtcacgagtttgaattcgttgcagacaaaagcttgtaatttaagcagcaaggaggggtaagttcattatccatcgagtttcgaaccctgtcggccggcactcggggatttctagtttttttgtaaaagaatttttgtagataacaccttgcatcagattatcagatgttgcgtttctcttatacaacatcccaaatagctttattgtttgtatgctagtttgaaccacagaattcagtacttatttggcttttgtaacaactttggacattacaatataagataagtcttagctttgttttgtcagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41150" stop="45966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41443" g_stop="41559" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41560" i_stop="43654" i_length="2095">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43655" g_stop="44960" g_length="1306"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="1423" r_length="1306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44961" i_stop="45657" i_length="697">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45658" g_stop="45673" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1424" r_stop="1439" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-M6933" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41443" e_stop="41559"/>
          <exon e_start="43655" e_stop="44960"/>
          <exon e_start="45658" e_stop="45673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCTCCGGCAACCAACTTTGTTCTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAAGTTCGTCTTTTGTCATCTCCATTTCTGTATTTGCTTTTCTATTTATTTTGGGAATTTCAGCTTGTGATCATAACTTGTTGGATGAAATGCTTATGATGTGTGAGTATTAATGGACTTTCATTCTTACCTTGTTTTGTTATACCGTATCTGTTAGATTGAATTGAAAAACTTGAAAAATTGGAAGAACGATGATTGTTTGGATTTAGATGTGTAATTAAGGATTGTATGCTGAATGATTGTCATTGAATTTATTGGTATTGATTGCTTTTTGTTAAAATCCATGTACACTTTACACTCTCTAGAGGCCAACTTTGTTGTTGTTAATCCCAATGTTTCAGTTTATGTGAGGTGTTTGTGTGGGCACCAAGTTTTTATTTAAGAAAATTGGGTACTTTTGTGAAAGACTAAAAGGAAAAAACAGTGACATAAATTGGGATATAGGATCACAATTTGTATATGTTTAGTGCATTCCACTCAATGCTGTAGATTTTACTGAGGAGTTTTGAATCATTTGGAATGTTAAGGGAAAAGTGAGACCTCTTATTTCACTTTCGTTGGTCTAATTTCCATGCGAATGCTTCGATCATCGAGATAAATTACTTTTCCTGTTATGGTAGGAAGTTGGTGCATTCAGTTGCCATATTTTTGTCTAATGTAGAAGGTAAGTCTTACCTGTATTTTGTTATTCATGAATTAATGTCGCTATACACACTTTTTTCCAAGAGAGGGAAGTGATGTTAAATTAATTCCAGGTATTTTTTTGCAAAAAGAACTTTCAAATGCCATAAGTGCAGACTGCAATTTTATCTTCCCAAATGTCATTCAGTTGGCTAGTGTGCTAACTTGATTGTTCTGGTAATATGTTTTGATTATTAAGAGAAGTATTAAAGGATCATTTGGACCAAGTACGGAATGGAAAACAAGCTCTCTAAACTACTAGGACTATCTAATTCATTCATGTCTTTTTTGAAGTACAGTCTGTGAATCTAAGATTTTCTTTCACTTTATATAACAAAAATTATATGTTAGCCTCAATTGAAGAGGAAATGACTAAGTCTAATTCTGCTAAGAGGGGTCTCTCTATTTTCATGAAGTTCTGAGATTTTCTGATGTGAGCCTTTGACTTTAGATTCCAAGAATTTGTATCCTAGTCTCAGTAGTTAAAAAAAGAAAGAATTAGTATCTTTTAGTCTCAGTAGAAGAGGAGTATGATTGCTCAGTTTCTCCTTTTCTTGGTTTTTTGTTTCTTCTTAAATCTTTCAAATCTAATGCTTCAAAGAATGATTCTTGTGGAACTAAATTTTCTTGTAAAAGTTGTTCATTCAACTTAATGACTTTTCTACCGATGCCATGTTAGAGTGTAACTGCTGTCAAGTTTCAAGTCGGTTAACTGTGTCTTACTTTGCGTGGTATCTGCACATTGCGGGACACGTTTATCGATTGTAATCTGATGAGAAAAATATGATTAGAGGCCTCCTTTCCTTTACCTTGTTTTCTGTGATACACACGAGCTACATTTAATAAAATATTGCAATTCTTGATGGTCCTTCTTGTTTAAGGGGAGAACTAGAAATGAGAATGATGTGGATTTCCCTTGCCTAAGAAATAAACTTTTTATATGATTTTGGTTGTTCAAGGGATAGGGGAGCTATGAGGAGGATGTGGAGCAAAGCTTTTTTCGGTTTCTCTAAATGTGCTTCTATGAAAAGAAATTCCATATGAGGGAAATTCAGTGACCTAGTAGCATTATAGAGTGTTACACATAGAAAACGAGTGAGAAATATCATGGAAGTCTTTCCTCTTTCCTCCTCTTCATTTTTCCTTTTCTGTTTTGGTTCTTCATAGTTTGTATAAAACATATGAGTAGATTTGATTGTGCTGCTTTCATGCCTGATTCGGAGTTCCAAATGATGTTATTTATGTGTTTAACCAATTGCTCATAATGCTTTTGTATCAGCAAGTAAACTTTGATTTGGCACAATTTGTTTCTATTTTGAACTGACTGGATACATTCAGTCACTGAAACTTGTGAATTTTTTCTACTTTTGCTTTTAATTTATCAGATTGCATAATATCTCTTGTAATTTCTTCTCAGATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGAACCTTCAGTAGCATTGGATGACGAAGGTGTGAAATTGCTAGAGTATATTATTGCAGAGCACAGGAAAAAAGGTGGTATTGTCATTGTCGCCACCCATCTGCCTATTCAGATCGAGGATGCAATGTTTTTAAGGTTGCCACCAAGGTTCCCTAGAAGGATGACTTTAGTAGACATGCTTGATAGAGGCGGCCTCGACTGATCATTAAGAAGATAAAGAGTCCAATCTAAAGAAGCTCTCCAATGAATTCAAAAGGGAGCTGTTTTCTCTTTCATTCTTGATGATTGCAAGAATTTCTCTATCTTTACTTTGTTAGCTCCTCCTCAATTTGCACTTCACTTTGCCCCTAAAATGTGCTGAGAACACATGCCCTCATTGGTCTAATGGTATGAACGGCAACATTGGATGTGTGGATTAGACGAATGTCACGAGTTTGAATTCGTTGCAGACAAAAGCTTGTAATTTAAGCAGCAAGGAGGGGTAAGTTCATTATCCATCGAGTTTCGAACCCTGTCGGCCGGCACTCGGGGATTTCTAGTTTTTTTGTAAAAGAATTTTTGTAGATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGGACATTACAATATAAGATAAGTCTTAGCTTTGTTTTGTCAGCAAATTGTGGGTACGATTGGATTAGTATTTTTTTTTTTTGGTTGAAAGTTTAATTTCCGATTTTTCACTTCCTATCTACATTTTGAATATATAAAACTTTGAAGTATTTATTCTTGATGCAATTATCGAACAAGCGTGATAGTTACCTACATAGTCTAATTCATGATTGCAACATTACAATTACATAACAAGCACATGTTAGTGAGATATAAATTTAAATTAGTTATTTTTTTTATACTTCAAAATTTAAAAATATACGAGGAGAGAACGAAATTCATGTCATAAATGAATAATTTGGAGTTCATATTCATCTATTTATATATGAAAAAAAGCCCCTATCAACACATGTATTCGACAACTTAATTCATATTCGATTAAAAAATGGATCAATAATGCACTACTCCGTGACGTTTTATATTGCTCCATCTAGTTAATTTTATGAGCATTTTAATGCCAGAAAATAAGTTGATTGCATTTTTGGTTCAATAAAATTGAAATGATAGAAGTACATTTTTTTTATAGCCAAATTTAATAGATTAACTATTTTTAAGTTTTTAAAAAAATCTTCTTCCATTTTAGAAAAATCACGTGGTCACCATGTGCTCAACACTAAATCCACAAGATCTCTGTGAGTGGTTCAATTTTCTTTTCAAAAATATAAGTTTTCTGGGATTTTAGTTTTATATCTGCAAAAAAAAAAAAAACAAAAAAAAAAA</genome_strand>
        <mrna_strand>GCACGAGCCGGCAACCAACTTTGTTCTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGAACCTTCAGTAGCATTGGATGACGAAGGTGTGAAATTGCTAGAGTATATTATTGCAGAGCACAGGAAAAAAGGTGGTATTGTCATTGTCGCCACCCATCTGCCTATTCAGATCGAGGATGCAATGTTTTTAAGGTTGCCACCAAGGTTCCCTAGAAGGATGACTTTAGTAGACATGCTTGATAGAGGCGGCCTCGACTGATCATTAAGAAGATAAAGAGTCCAATCTAAAGAAGCTCTCCAATGAATTCAAAAGGGAGCTGTTTTCTCTTTCATTCTTGATGATTGCAAGAATTTCTCTATCTTTACTTTGTTAGCTCCTCCTCAATTTGCACTTCACTTTGCCCCTAAAATGTGCTGAGAACACATGCCCTCATTGGTCTAATGGTATGAACGGCAACATTGGATGTGTGGATTAGACGAATGTCACGAGTTTGAATTCGTTGCAGACAAAAGCTTGTAATTTAAGCAGCAAGGAGGGGTAAGTTCATTATCCATCGAGTTTCGAACCCTGTCGGCCGGCACTCGGGGATTTCTAGTTTTTTTGTAAAAGAATTTTTGTAGATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGGACATTACAATATAAGATAAGTCTTAGCTTTGTTTTGTCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-QPXgqi/sgn_marker_seqs" ref_id="SGN-M6933-2" ref_strand="+" ref_description="SGN-M6933-2 C2_At1g63270-2 [cosii_markers]">
      <seq>ctgagaaaatacttcattgctagctgtagctcgacggacggcggtaagcagaacggccgggggtgactccatttactgtagaaaatcacaaactccaagcaagatttgaaagagcatcagctgccttttattttctgttgctcaatcaaggaagtgttatatctactactaatctcggtccttcattcacttgaaatgtctttgcgtagacctccacttcctcgacttctgctgaacaatgtctcgtgtatgagaaatgctcaacaaattttgcgccacgtaaatgtttccctccatgatggtggtgcacttgtactaacaggcaccaatggctctggtaaatccacattcttgcgcatgttggctggtttctcaaaaccatcagctggtgagatactctggaatggccatgacattactgattcaggtgtttttcaacagtacaaacttcaactcaattggctgtctcttaaggacgccatcaaagagaagttcacggtcctcgacaatgttcaatggtttgaagttcttgaaggcaagcaaggaaggtctctgccagctttggaacttatggggcttggaagattagtaaacgataaagcacggatgctttctatgggtcaaaggaaaagggtccagctcgccagattgttagcaattgatcgacctatttggttgcttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0072J06-TmrKu/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12SLe0072J06.1" temp_strand="+" temp_description="C12SLe0072J06.1  AC217249.1 htgs_phase:1 submitted_to_sgn_as:C12SLe0072J06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41168" stop="44529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41468" g_stop="41559" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41560" i_stop="41619" i_length="60">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.827" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41620" g_stop="41658" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="129" r_length="37" r_score="0.436"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41659" i_stop="42660" i_length="1002">
            <donor d_prob="0.761" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42661" g_stop="42670" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="139" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42671" i_stop="43682" i_length="1012">
            <donor d_prob="0.797" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43683" g_stop="44229" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="686" r_length="547" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0072J06.1" gen_strand="+" ref_id="SGN-M6933-2" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0072J06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6933-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41468" e_stop="41559"/>
          <exon e_start="41620" e_stop="41658"/>
          <exon e_start="42661" e_stop="42670"/>
          <exon e_start="43683" e_stop="44229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAAGTTCGTCTTTTGTCATCTCCATTTCTGTATTTGCTTTTCTATTTATTTTGGGAATTTCAGCTTGTGATCATAACTTGTTGGATGAAATGCTTATGATGTGTGAGTATTAATGGACTTTCATTCTTACCTTGTTTTGTTATACCGTATCTGTTAGATTGAATTGAAAAACTTGAAAAATTGGAAGAACGATGATTGTTTGGATTTAGATGTGTAATTAAGGATTGTATGCTGAATGATTGTCATTGAATTTATTGGTATTGATTGCTTTTTGTTAAAATCCATGTACACTTTACACTCTCTAGAGGCCAACTTTGTTGTTGTTAATCCCAATGTTTCAGTTTATGTGAGGTGTTTGTGTGGGCACCAAGTTTTTATTTAAGAAAATTGGGTACTTTTGTGAAAGACTAAAAGGAAAAAACAGTGACATAAATTGGGATATAGGATCACAATTTGTATATGTTTAGTGCATTCCACTCAATGCTGTAGATTTTACTGAGGAGTTTTGAATCATTTGGAATGTTAAGGGAAAAGTGAGACCTCTTATTTCACTTTCGTTGGTCTAATTTCCATGCGAATGCTTCGATCATCGAGATAAATTACTTTTCCTGTTATGGTAGGAAGTTGGTGCATTCAGTTGCCATATTTTTGTCTAATGTAGAAGGTAAGTCTTACCTGTATTTTGTTATTCATGAATTAATGTCGCTATACACACTTTTTTCCAAGAGAGGGAAGTGATGTTAAATTAATTCCAGGTATTTTTTTGCAAAAAGAACTTTCAAATGCCATAAGTGCAGACTGCAATTTTATCTTCCCAAATGTCATTCAGTTGGCTAGTGTGCTAACTTGATTGTTCTGGTAATATGTTTTGATTATTAAGAGAAGTATTAAAGGATCATTTGGACCAAGTACGGAATGGAAAACAAGCTCTCTAAACTACTAGGACTATCTAATTCATTCATGTCTTTTTTGAAGTACAGTCTGTGAATCTAAGATTTTCTTTCACTTTATATAACAAAAATTATATGTTAGCCTCAATTGAAGAGGAAATGACTAAGTCTAATTCTGCTAAGAGGGGTCTCTCTATTTTCATGAAGTTCTGAGATTTTCTGATGTGAGCCTTTGACTTTAGATTCCAAGAATTTGTATCCTAGTCTCAGTAGTTAAAAAAAGAAAGAATTAGTATCTTTTAGTCTCAGTAGAAGAGGAGTATGATTGCTCAGTTTCTCCTTTTCTTGGTTTTTTGTTTCTTCTTAAATCTTTCAAATCTAATGCTTCAAAGAATGATTCTTGTGGAACTAAATTTTCTTGTAAAAGTTGTTCATTCAACTTAATGACTTTTCTACCGATGCCATGTTAGAGTGTAACTGCTGTCAAGTTTCAAGTCGGTTAACTGTGTCTTACTTTGCGTGGTATCTGCACATTGCGGGACACGTTTATCGATTGTAATCTGATGAGAAAAATATGATTAGAGGCCTCCTTTCCTTTACCTTGTTTTCTGTGATACACACGAGCTACATTTAATAAAATATTGCAATTCTTGATGGTCCTTCTTGTTTAAGGGGAGAACTAGAAATGAGAATGATGTGGATTTCCCTTGCCTAAGAAATAAACTTTTTATATGATTTTGGTTGTTCAAGGGATAGGGGAGCTATGAGGAGGATGTGGAGCAAAGCTTTTTTCGGTTTCTCTAAATGTGCTTCTATGAAAAGAAATTCCATATGAGGGAAATTCAGTGACCTAGTAGCATTATAGAGTGTTACACATAGAAAACGAGTGAGAAATATCATGGAAGTCTTTCCTCTTTCCTCCTCTTCATTTTTCCTTTTCTGTTTTGGTTCTTCATAGTTTGTATAAAACATATGAGTAGATTTGATTGTGCTGCTTTCATGCCTGATTCGGAGTTCCAAATGATGTTATTTATGTGTTTAACCAATTGCTCATAATGCTTTTGTATCAGCAAGTAAACTTTGATTTGGCACAATTTGTTTCTATTTTGAACTGACTGGATACATTCAGTCACTGAAACTTGTGAATTTTTTCTACTTTTGCTTTTAATTTATCAGATTGCATAATATCTCTTGTAATTTCTTCTCAGATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGA</genome_strand>
        <mrna_strand>CTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGGGGTGACTCCATTTACTGTAGAAAATCACAAA............................................................C-TCCAAGCAAGATTTGAAAGAGCATCAGC-TGCCTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAATCAAGGAAGTGTTATATCTACTACTAATCTCGGTCCTTCATTCACTTGAAATGTCTTTGCGTAGACCTCCACTTCCTCGACTTCTGCTGAACAATGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACGTAAATGTTTCCCTCCATGATGGTGGTGCACTTGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTCGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGAAGGTCTCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTCCAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="41443" PGL_stop="45673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41443" e_stop="41559"/>
            <exon e_start="43655" e_stop="44960"/>
            <exon e_start="45658" e_stop="45673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.949"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="41443" e_stop="41559" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41560" i_stop="43654" i_length="2095"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43655" e_stop="44960" e_length="1306"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44961" i_stop="45657" i_length="697"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="45658" e_stop="45673" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41443" stop="41559"/>
              <exon start="43655" stop="44960"/>
              <exon start="45658" stop="45673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6933" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTCTCCGGCAACCAACTTTGTTCTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAA : ATCCAAGCAAGATTAGAAAGAGCATCAGCCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGAACCTTCAGTAGCATTGGATGACGAAGGTGTGAAATTGCTAGAGTATATTATTGCAGAGCACAGGAAAAAAGGTGGTATTGTCATTGTCGCCACCCATCTGCCTATTCAGATCGAGGATGCAATGTTTTTAAGGTTGCCACCAAGGTTCCCTAGAAGGATGACTTTAGTAGACATGCTTGATAGAGGCGGCCTCGACTGATCATTAAGAAGATAAAGAGTCCAATCTAAAGAAGCTCTCCAATGAATTCAAAAGGGAGCTGTTTTCTCTTTCATTCTTGATGATTGCAAGAATTTCTCTATCTTTACTTTGTTAGCTCCTCCTCAATTTGCACTTCACTTTGCCCCTAAAATGTGCTGAGAACACATGCCCTCATTGGTCTAATGGTATGAACGGCAACATTGGATGTGTGGATTAGACGAATGTCACGAGTTTGAATTCGTTGCAGACAAAAGCTTGTAATTTAAGCAGCAAGGAGGGGTAAGTTCATTATCCATCGAGTTTCGAACCCTGTCGGCCGGCACTCGGGGATTTCTAGTTTTTTTGTAAAAGAATTTTTGTAGATAACACCTTGCATCAGATTATCAGATGTTGCGTTTCTCTTATACAACATCCCAAATAGCTTTATTGTTTGTATGCTAGTTTGAACCACAGAATTCAGTACTTATTTGGCTTTTGTAACAACTTTGGACATTACAATATAAGATAAGTCTTAGCTTTGTTTTGTCAGCAA : AAAACAAAAAAAAAAA</gDNA_template>
            <first_frame> V  F  S  G  N  Q  L  C  S  E  K  I  L  H  C  *  L  *  L  D  G  R  R  *  A  E  R  P  E  V  I  P  F  A  V  E  N  H  K  :  I  Q  A  R  L  E  R  A  S  A  S  N  K  E  V  L  Y  L  L  L  I  L  V  L  H  S  L  E  M  S  L  C  R  P  P  L  P  R  L  L  L  N  N  V  S  C  M  R  N  A  Q  Q  I  L  R  H  I  N  V  S  L  H  D  G  G  A  L  V  L  T  G  T  N  G  S  G  K  S  T  F  L  R  M  L  A  G  F  S  K  P  S  A  G  E  I  L  W  N  G  H  D  I  T  D  S  G  V  F  Q  Q  Y  K  L  Q  L  N  W  L  S  L  K  D  A  I  K  E  K  F  T  V  L  D  N  V  Q  W  F  E  V  L  E  G  K  Q  G  K  S  L  P  A  L  E  L  M  G  L  G  R  L  V  N  D  K  A  R  M  L  S  M  G  Q  R  K  R  V  Q  L  A  R  L  L  A  I  D  R  P  I  W  L  L  D  E  P  S  V  A  L  D  D  E  G  V  K  L  L  E  Y  I  I  A  E  H  R  K  K  G  G  I  V  I  V  A  T  H  L  P  I  Q  I  E  D  A  M  F  L  R  L  P  P  R  F  P  R  R  M  T  L  V  D  M  L  D  R  G  G  L  D  *  S  L  R  R  *  R  V  Q  S  K  E  A  L  Q  *  I  Q  K  G  A  V  F  S  F  I  L  D  D  C  K  N  F  S  I  F  T  L  L  A  P  P  Q  F  A  L  H  F  A  P  K  M  C  *  E  H  M  P  S  L  V  *  W  Y  E  R  Q  H  W  M  C  G  L  D  E  C  H  E  F  E  F  V  A  D  K  S  L  *  F  K  Q  Q  G  G  V  S  S  L  S  I  E  F  R  T  L  S  A  G  T  R  G  F  L  V  F  L  *  K  N  F  C  R  *  H  L  A  S  D  Y  Q  M  L  R  F  S  Y  T  T  S  Q  I  A  L  L  F  V  C  *  F  E  P  Q  N  S  V  L  I  W  L  L  *  Q  L  W  T  L  Q  Y  K  I  S  L  S  F  V  L  S  A   : K  N  K  K  K   </first_frame>
            <second_frame>  S  S  P  A  T  N  F  V  L  R  K  Y  F  I  A  S  C  S  S  T  D  G  G  K  Q  N  G  R  R  *  F  H  L  L  *  K  I  T  K :   S  K  Q  D  *  K  E  H  Q  P  Q  T  R  K  Y  Y  I  Y  Y  *  S  W  S  F  I  H  L  R  C  L  C  V  D  L  H  F  L  D  F  C  *  I  T  S  R  V  *  E  M  L  N  K  F  C  A  T  *  M  F  P  S  M  M  V  V  H  W  Y  *  Q  A  P  M  A  L  V  N  P  H  S  C  A  C  W  L  V  S  Q  N  H  Q  L  V  R  Y  S  G  M  A  M  T  L  L  I  Q  V  F  F  N  S  T  N  F  N  S  I  G  C  L  L  R  T  P  S  K  R  S  S  R  S  L  T  M  F  N  G  L  K  F  L  K  A  S  K  G  S  R  C  Q  L  W  N  L  W  G  L  E  D  *  *  T  I  K  H  G  C  F  L  W  V  K  G  K  G  Y  S  S  P  D  C  *  Q  L  I  D  L  F  G  C  L  M  N  L  Q  *  H  W  M  T  K  V  *  N  C  *  S  I  L  L  Q  S  T  G  K  K  V  V  L  S  L  S  P  P  I  C  L  F  R  S  R  M  Q  C  F  *  G  C  H  Q  G  S  L  E  G  *  L  *  *  T  C  L  I  E  A  A  S  T  D  H  *  E  D  K  E  S  N  L  K  K  L  S  N  E  F  K  R  E  L  F  S  L  S  F  L  M  I  A  R  I  S  L  S  L  L  C  *  L  L  L  N  L  H  F  T  L  P  L  K  C  A  E  N  T  C  P  H  W  S  N  G  M  N  G  N  I  G  C  V  D  *  T  N  V  T  S  L  N  S  L  Q  T  K  A  C  N  L  S  S  K  E  G  *  V  H  Y  P  S  S  F  E  P  C  R  P  A  L  G  D  F  *  F  F  C  K  R  I  F  V  D  N  T  L  H  Q  I  I  R  C  C  V  S  L  I  Q  H  P  K  *  L  Y  C  L  Y  A  S  L  N  H  R  I  Q  Y  L  F  G  F  C  N  N  F  G  H  Y  N  I  R  *  V  L  A  L  F  C  Q  Q  :  K  T  K  K  K  </second_frame>
            <third_frame>   L  L  R  Q  P  T  L  F  *  E  N  T  S  L  L  A  V  A  R  R  T  A  V  S  R  T  A  G  G  D  S  I  C  C  R  K  S  Q   : N  P  S  K  I  R  K  S  I  S  L  K  Q  G  S  T  I  S  T  T  N  L  G  P  S  F  T  *  D  V  F  V  *  T  S  T  S  S  T  S  A  E  *  R  L  V  Y  E  K  C  S  T  N  F  A  P  H  K  C  F  P  P  *  W  W  C  T  G  T  N  R  H  Q  W  L  W  *  I  H  I  L  A  H  V  G  W  F  L  K  T  I  S  W  *  D  T  L  E  W  P  *  H  Y  *  F  R  C  F  S  T  V  Q  T  S  T  Q  L  A  V  S  *  G  R  H  Q  R  E  V  H  G  P  *  Q  C  S  M  V  *  S  S  *  R  Q  A  R  E  V  A  A  S  F  G  T  Y  G  A  W  K  I  S  K  R  *  S  T  D  A  F  Y  G  S  K  E  K  G  T  A  R  Q  I  V  S  N  *  S  T  Y  L  V  A  *  *  T  F  S  S  I  G  *  R  R  C  E  I  A  R  V  Y  Y  C  R  A  Q  E  K  R  W  Y  C  H  C  R  H  P  S  A  Y  S  D  R  G  C  N  V  F  K  V  A  T  K  V  P  *  K  D  D  F  S  R  H  A  *  *  R  R  P  R  L  I  I  K  K  I  K  S  P  I  *  R  S  S  P  M  N  S  K  G  S  C  F  L  F  H  S  *  *  L  Q  E  F  L  Y  L  Y  F  V  S  S  S  S  I  C  T  S  L  C  P  *  N  V  L  R  T  H  A  L  I  G  L  M  V  *  T  A  T  L  D  V  W  I  R  R  M  S  R  V  *  I  R  C  R  Q  K  L  V  I  *  A  A  R  R  G  K  F  I  I  H  R  V  S  N  P  V  G  R  H  S  G  I  S  S  F  F  V  K  E  F  L  *  I  T  P  C  I  R  L  S  D  V  A  F  L  L  Y  N  I  P  N  S  F  I  V  C  M  L  V  *  T  T  E  F  S  T  Y  L  A  F  V  T  T  L  D  I  T  I  *  D  K  S  *  L  C  F  V  S  K :   K  Q  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41515" stop="41559"/>
                    <exon start="43655" stop="44428"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AERPEVIPFAVENHKIQARLERASASNKEVLYLLLILVLHSLEMSLCRPPLPRLLLNNVSCMRNAQQILRHINVSLHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITDSGVFQQYKLQLNWLSLKDAIKEKFTVLDNVQWFEVLEGKQGKSLPALELMGLGRLVNDKARMLSMGQRKRVQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKKGGIVIVATHLPIQIEDAMFLRLPPRFPRRMTLVDMLDRGGLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41468" e_stop="41559"/>
            <exon e_start="41620" e_stop="41658"/>
            <exon e_start="42661" e_stop="42670"/>
            <exon e_start="43683" e_stop="44229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.827" e_score="0.967"/>
          <exon-intron don_prob="0.761" acc_prob="0.000" e_score="0.436"/>
          <exon-intron don_prob="0.797" acc_prob="0.000" e_score="0.900"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="41468" e_stop="41559" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.827">
            <gDNA_intron_boundary i_start="41560" i_stop="41619" i_length="60"/>
          </intron>
          <exon e_serial="2" e_score="0.436">
            <gDNA_exon_boundary e_start="41620" e_stop="41658" e_length="39"/>
          </exon>
          <intron i_serial="2" don_prob="0.761" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41659" i_stop="42660" i_length="1002"/>
          </intron>
          <exon e_serial="3" e_score="0.900">
            <gDNA_exon_boundary e_start="42661" e_stop="42670" e_length="10"/>
          </exon>
          <intron i_serial="3" don_prob="0.797" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42671" i_stop="43682" i_length="1012"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="43683" e_stop="44229" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41468" stop="41559"/>
              <exon start="41620" stop="41658"/>
              <exon start="42661" stop="42670"/>
              <exon start="43683" stop="44229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6933-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAGAAAATACTTCATTGCTAGCTGTAGCTCGACGGACGGCGGTAAGCAGAACGGCCGGAGGTGATTCCATTTGCTGTAGAAAATCACAAA : CTTGTGATCATAACTTGTTGGATGAAATGCTTATGATGT : ATTTTCTGAT : CCTCAAACAAGGAAGTACTATATCTACTACTAATCTTGGTCCTTCATTCACTTGAGATGTCTTTGTGTAGACCTCCACTTCCTCGACTTCTGCTGAATAACGTCTCGTGTATGAGAAATGCTCAACAAATTTTGCGCCACATAAATGTTTCCCTCCATGATGGTGGTGCACTGGTACTAACAGGCACCAATGGCTCTGGTAAATCCACATTCTTGCGCATGTTGGCTGGTTTCTCAAAACCATCAGCTGGTGAGATACTCTGGAATGGCCATGACATTACTGATTCAGGTGTTTTTCAACAGTACAAACTTCAACTCAATTGGCTGTCTCTTAAGGACGCCATCAAAGAGAAGTTCACGGTCCTTGACAATGTTCAATGGTTTGAAGTTCTTGAAGGCAAGCAAGGGAAGTCGCTGCCAGCTTTGGAACTTATGGGGCTTGGAAGATTAGTAAACGATAAAGCACGGATGCTTTCTATGGGTCAAAGGAAAAGGGTACAGCTCGCCAGATTGTTAGCAATTGATCGACCTATTTGGTTGCTTGATGA</gDNA_template>
            <first_frame> L  R  K  Y  F  I  A  S  C  S  S  T  D  G  G  K  Q  N  G  R  R  *  F  H  L  L  *  K  I  T  N :   L  *  S  *  L  V  G  *  N  A  Y  D  V :   F  S  D  :  P  Q  T  R  K  Y  Y  I  Y  Y  *  S  W  S  F  I  H  L  R  C  L  C  V  D  L  H  F  L  D  F  C  *  I  T  S  R  V  *  E  M  L  N  K  F  C  A  T  *  M  F  P  S  M  M  V  V  H  W  Y  *  Q  A  P  M  A  L  V  N  P  H  S  C  A  C  W  L  V  S  Q  N  H  Q  L  V  R  Y  S  G  M  A  M  T  L  L  I  Q  V  F  F  N  S  T  N  F  N  S  I  G  C  L  L  R  T  P  S  K  R  S  S  R  S  L  T  M  F  N  G  L  K  F  L  K  A  S  K  G  S  R  C  Q  L  W  N  L  W  G  L  E  D  *  *  T  I  K  H  G  C  F  L  W  V  K  G  K  G  Y  S  S  P  D  C  *  Q  L  I  D  L  F  G  C  L  M  </first_frame>
            <second_frame>  *  E  N  T  S  L  L  A  V  A  R  R  T  A  V  S  R  T  A  G  G  D  S  I  C  C  R  K  S  Q   : T  C  D  H  N  L  L  D  E  M  L  M  M   : Y  F  L  I :   L  K  Q  G  S  T  I  S  T  T  N  L  G  P  S  F  T  *  D  V  F  V  *  T  S  T  S  S  T  S  A  E  *  R  L  V  Y  E  K  C  S  T  N  F  A  P  H  K  C  F  P  P  *  W  W  C  T  G  T  N  R  H  Q  W  L  W  *  I  H  I  L  A  H  V  G  W  F  L  K  T  I  S  W  *  D  T  L  E  W  P  *  H  Y  *  F  R  C  F  S  T  V  Q  T  S  T  Q  L  A  V  S  *  G  R  H  Q  R  E  V  H  G  P  *  Q  C  S  M  V  *  S  S  *  R  Q  A  R  E  V  A  A  S  F  G  T  Y  G  A  W  K  I  S  K  R  *  S  T  D  A  F  Y  G  S  K  E  K  G  T  A  R  Q  I  V  S  N  *  S  T  Y  L  V  A  *  * </second_frame>
            <third_frame>   E  K  I  L  H  C  *  L  *  L  D  G  R  R  *  A  E  R  P  E  V  I  P  F  A  V  E  N  H  K  :  L  V  I  I  T  C  W  M  K  C  L  *  C  :  I  F  *   : S  S  N  K  E  V  L  Y  L  L  L  I  L  V  L  H  S  L  E  M  S  L  C  R  P  P  L  P  R  L  L  L  N  N  V  S  C  M  R  N  A  Q  Q  I  L  R  H  I  N  V  S  L  H  D  G  G  A  L  V  L  T  G  T  N  G  S  G  K  S  T  F  L  R  M  L  A  G  F  S  K  P  S  A  G  E  I  L  W  N  G  H  D  I  T  D  S  G  V  F  Q  Q  Y  K  L  Q  L  N  W  L  S  L  K  D  A  I  K  E  K  F  T  V  L  D  N  V  Q  W  F  E  V  L  E  G  K  Q  G  K  S  L  P  A  L  E  L  M  G  L  G  R  L  V  N  D  K  A  R  M  L  S  M  G  Q  R  K  R  V  Q  L  A  R  L  L  A  I  D  R  P  I  W  L  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0072J06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42670" stop="44227"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSNKEVLYLLLILVLHSLEMSLCRPPLPRLLLNNVSCMRNAQQILRHINVSLHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITDSGVFQQYKLQLNWLSLKDAIKEKFTVLDNVQWFEVLEGKQGKSLPALELMGLGRLVNDKARMLSMGQRKRVQLARLLAIDRPIWLLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 17 chains have been computed
$ 
$ memory statistics:
$ 4816 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2408 bytes was the average size of a spliced alignment
$ 5776 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5776 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 21 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-10 21:01:21
-->
