<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-08 16:59:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317537" ref_strand="+" ref_description="SGN-U317537        Tomato 200607 #1 [21 ESTs aligned] arabidopsis/peptide: AT3G16170.1 | Symbol: None | acyl-activating enzyme 13 (AAE13), similar to malonyl CoA synthetase GB:AAF28840 from (Bradyrhizobium japonicum); contains Pfam AMP-binding enzyme domain PF00501; identical to cDNA acyl-activating enzyme 13 (At3g16170) GI:29893232, acyl-activating enzyme 13 (Arabidopsis thaliana) GI:29893233 | chr3:5476080-5480308 FORWARD | Aliases: MSL1.21 (evalue: 0, score=709) genbank/nr: gi|9294464|dbj|BAB02683.1| long-chain-fatty-acid-CoA ligase-like protein [Arabidopsis thaliana](evalue: 0, score=716)">
      <seq>tcaacctgtggctaacccaatcggaaaccgacgccgccgatcccgccggcgagaccaaccccccaaccatagacgtatttgaactatttggttattaacgaagaaaccaaaaatttcaacgaagccacatttactatgtcacgtaacatacagttgtggcaaccaaagctgttgggtcgccataaattgacatttcttgttttttctttataaagaaatactcctcacctaatagtatgagcacattgaaaattttcaactactttctcagttctaaggccacacctctgcactctttatatattcagtatcatttttcgtgtcaaagatatcatagctttatctcctcgcaacttcgcctcttatcctccgctacaagtagtataagctatatggagctggtcaaggaagttgccagcaagggacctgaatcgcagaagaatattgcgataagagctgatgaaaagagctacagttacctgcagttgatttcatctgcaaggagaatttcaagtttgttaagcaagctagatcttaaaaccgacaaaggcatcaaagaaaatgaacatcacaaaggagcaagagtagggattgtgtccaaaccttctgctgagttcgttgctggaatactaggaacctggcttagtggaggttgtgcagttcctcttgctctgagctatcctgagagtgaactgctacatgtgatgaatgactcggacatctccataattttgagtactgaagaccaccaagaacttatgaatgcaattgcagcaaaaactggtgctcagttgtctctcattccttcaattcctgatgtgcattcatcaacaaaacatgaccaatcaaaagacatggtttctgacggtcaacaagatctgctagagatcaattcttatggcgagaaccctgcttttatcttgtacaccagcggcacaacagggaaaccaaaaggagttgtgcacacacacaatggagtcttagcacaggtccaaatgttagctaatgcatgggaatacacgcccaaggatcaatttctgcattgtctaccactccatcatgtgcatggacttttcaatgctttgcttgcccctctttatgcaggttccacggtcgacttcgtgccaaaattcagtgtgaggggaatttggcagagatggcgtgaatcatatcctacagatggtactataacagataatgccattacggtgtttactggagttccaactatgtatgcacgattgatacaaggttatgaagcaatggatccagaactaaaaacagcttctgcttcagcagcaaggcacttgcgccttatgatgagtggctcctctgcacttcctctgcccgtcatgcagcagtgggaaaccattactggacaccggttattggaacgttatggcatgactgagtttgtgatggcaatctctaatcccataaacggcaagcgcaaaggaggtactgttggcaagccatttccaggtgtgcaggccaagattcttttggacgatgcgagtagcaatgaccaaactggagttggggagctctgcattaagagcccatcactgttcaaagaatactggaaattacctgaggtaaccaagcagtcatttactgatgatggatatttcaagactggagatactgttactgttgacgaagaggggtattacatcattctaggacgtacaaatgctgatattatgaagtttggtggatacaaattatcagcgttggaaattgaagcagttctgttggagcatcaagctatattagagtgctgtgttttaggcttgcctgacaaagactatggcgaagtggtatgtgcaatagttgtgcctgaggctgaagttaaaagaagacgagatgaggagctaaagcctgcactaaccttgcacgaactttctgattgggcgaaggagaagcttgccccatacaagataccaactcgtctgtttctgtgggaatctctgcctcgaaatgcgatgggaaaggtaaacaagaaagagctaaaaaggaagctgactgaagatcccaaatgagtcagaagatggagcatcagaaagtaaaatagtgctttaaggtgtcactctatgttcttttacacaaaaaaggtcttaaaagaatataagtccagacagtgactgaagtgaaagtgcaattagtatattaaatctaggaattctaatgagaattgaatttagaaaacatgttaagagttgataaatgaatatccaagataggacaactgagccctactaattctacttgtgatttggaaggatgttgtcttgttggacctgaatattgattttcttctgctatcccatttctataattgcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3419" stop="145106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3719" g_stop="4090" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4091" i_stop="4458" i_length="368">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4459" g_stop="4628" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="542" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4895" g_stop="5068" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="716" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5364" g_stop="5547" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="900" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5548" i_stop="5660" i_length="113">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5661" g_stop="5749" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="901" r_stop="989" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5750" i_stop="6279" i_length="530">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6280" g_stop="6349" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="990" r_stop="1059" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6350" i_stop="6481" i_length="132">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6482" g_stop="6534" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1060" r_stop="1112" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="6535" i_stop="6628" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="6629" g_stop="6736" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1113" r_stop="1220" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="6737" i_stop="7331" i_length="595">
            <donor d_prob="0.828" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="7332" g_stop="7430" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1221" r_stop="1319" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="7431" i_stop="7620" i_length="190">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="7621" g_stop="7713" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1320" r_stop="1412" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="7802" g_stop="7879" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1413" r_stop="1490" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="8041" g_stop="8145" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1491" r_stop="1595" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="8443" g_stop="8533" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1596" r_stop="1686" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="8534" i_stop="9225" i_length="692">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="9226" g_stop="9299" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1687" r_stop="1760" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="9300" i_stop="9437" i_length="138">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.353" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="9438" g_stop="9617" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1761" r_stop="1940" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
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            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="9902" g_stop="9955" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1941" r_stop="1994" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="9956" i_stop="10119" i_length="164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="10120" g_stop="10487" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1995" r_stop="2362" r_length="368" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-U317537" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>2362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3719" e_stop="4090"/>
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          <exon e_start="10120" e_stop="10487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCTGTGGCTAACCCAATCGGAAACCGACGCCGCCGATCCCGCCGGCGAGACCAACCCCCCAACCATAGACGTATTTGAACTATTTGGTTATTAATGAAGAAACCAAAAATTTCAACGAAGCCACATTTACTATGTCACGTAACATACAGTTGTGGCAACCAAAGCTGTTGGGTCGCCATAAATTGACATTTCTTGTTTTTTCTTTATAAAGAAATACTCCTCACCTAATAGTATGAGCACATTGAAAATTTTCAACTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCGGTAAGTTGAGGAATTTCGATTATCTCGATATAAGTTATTGTAAATTGGTATGTGTTCATCCAATATAGAAATGGGGTTCACTTGATTTTGAGATTTGGGGTGGTGTTTGTTTGGGAAAATGTTAAAGAAATGGAAGCGTATCAATTGTTTGAAGAAATGTTTGTTTGAGTCAGCTTCACTCGATTATGGATTTTTGACAGCTAGTGCTCGATGAATTAGAAATATGAGAAGATAAAATGATCTTAAAATTTGAAAAAGGGGCAATTTTGATCTTTGGGGATTTCCGACTTTGTTTTCCTTGATCATATTAGGTTTAGGATCAGTAGAAATAAATTATAAGTCTTATGAATTTCATTGGCTATTTTCAGCTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACCGTGAGTTGGAAATGACGAATTATCTATGAATAACTAAAGCTGCATGAATTTGTGTTTCTATTGAATAGTGTAAATTAAATGAAAGTTTTCTTTTCCCAGTTGTAATGTTTAGTCGACAATTATATTGTTTACGAAATTCATTCAATGTGAGTCCTTCACCCCACATTATCTTTTTCATCTGGATATATTGCTCTTCCAATTCCAAGGTCAGTCTACAGAATTTACTTCCGTTATTGCTTTCTGCTCAGTTGCTTCTACTTTTTCAGGACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGTCTGTCTCTGAATCTTTGTTCTTCTCCCTCACTGTTTCATGTCAGTAAAGTGTTTTATTGATAGATAATGAAGACACAAAAAAATGAATGTCTTTTGCCTTTTGAAATGCTCAATATTAATGACATAGATTGCATTATTTGTCATGCCTTGCTATCTGTCTGTAGATGATTAGCTCATGTTCAATTAGGCTGAATATTACCTGTCTGCATGATGTAGAAACACTGCAATGTCCTCTTCACTGTTTTTTTCCTCTTTTATGCTTATTTAATTCATTGTGAAACATTGATTTCTAGGACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATGGTGAGATAATGGGTAATTTGTCTGTTTCTCTATATGGTTATATATTTTCCCATTTGAGATGTTTGGAGCTCATCAATAGCATTTTCCTTTGTTCTGTACATGTTATCTTTAAGGCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAGGTTGATGTCTGTTCTAGACTTGATATCAGCATTCCCCTGCTTTGTTGGATCTTGATATGATTGATTCTTAGCCTTTATGTCTTCTTTTCAAATTCATTGATTTACTAGAAACATTCCACTTCTACTTCGTGATGTTACACTATAAATTAAGGCTCAGAAGATATCATTCATATCACAGACCTTGGTGTGTCCAATTGAGCAAGTTTGCTTCCCCTTTTTTCTTCCTCAATTAGGCTGTGAATGCATATGTATTCCATAATTCTGAAGGTAGGATAACATGCGATAGTATTTGTATTGCTGAGAGATGATAAGTAACCCAAGTCAGCACCTTGGACTAACTTCTGTTGTAATGAAGAAGAGTCGATATCATTTACTAAAGTGACCTTGCTTAGATCTTGTTTCAGTTGTCAGTAATATTGAGAGGGGTGAGGATTGTCTTTATTGAAGTTTCGATATGAAATACTCTTTTCAGTTTACTGGAAGTTTTGTTGATGTCTGTGCTAACCCTCCTTCCATGTTTGCTGTTTCAGGTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATCATATCCACATTCCTTTATTTTTGTTCCCAATCATGTTGTTTACATAATTCCTGCTTTTGCAATGTGTTTTTGTGTGGGATAAACAATCTCATTTGGACTACAAAACTGGCTGATCCTTAACCTGTACTGTACATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACGGTATAATTTCACATCGTCAAACTTTTTTCACTACAGCATACATGCTGTCGGATTGGAAATTCATGTTACTATATCCGCTTTTCTCTTTTTGAAGGTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGAGTAAGTCAGTTTTAAATAGATTAGTGAAACATTTTTGCAATGGTATGTGATGTTAGTTGATCTGTGAATTTATTATGTTGAGCTTTGCATTCTTAAACTTACCATGGAAAAATGATTTCTCGCTTCAGTTACATAATATGTGCATGAAGCTTTGAGTAAGAATACATGTTTCGTGTTTCTGCATCCCTGAAATGGACTCACAGTGGAAGCCTCTAATAATGTCATCACTTTCTTAATTTATCATGAAACTCCATTGCATCCTGTTTGCATCAAAGCTAAGAATAAGAATACATGGTTTCTCGATTCTTTTGCATAATGCTTTCTTTATGGCTGAGACTAATAATACCATGTCATGATCTGTGATTTCTGTATCCTTGGATAGGAGATACTTACAGCAGAAGCTTCTACTTAATGTCAGATATCTAAGATGTCACTACTCTGATTGTATTTGGGGTATCGATACGGATAACTTTAGCTATTGTGTGTACCTAGCTTGGATTTTCCAACGCTATGTGTCAACTAATAAGTTTGGTAGCGGATCCACCGACTCCTACCCTCCACTCTTTTCTGATTGATTTTTTTTCTAATCCAATAGGTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATGGTAATAGACTTGGTTTCTATTTTGCTGGTGTTTTTGATAAACAACATAAAACATAGTTAGGATCTTAACTGTACAGAGCCTGCTTCCTCATTTTGTTTTGTTTTGATTGAGTATAGAGTGTACTGTTGTCAAAACCTAATGTGTTTTTTAATCATCCCAAATGAGAAAAAACAATGATTTCTGCTTCCAGATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAGGTAAATGTGCTCATAGCCACTTTTAGTATGTAGGATTTTGACTGTTCATTTAATATCTATACTTATGTAAATGGTTAATTTCGTCTAGTTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAGGTTAGTGAGTTCCTTATGTTATGTTCTCAACATCTAATATGCTGCTGCAACAAAGTCCATAAATGCAGCCCAAAATTTTTGTTAGATATATCCCGTATTTATGATAAGGTCTATCTATTTTTCCTGAATAGTCTATCACTTCTTTATTTTGTTTCTGATAGGCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAGGTAATCACTACATAGTAGGGAATTCTACTACTTAAACATCTCCTGCTTTGAATTTTTTTCATGCATTTATGTTAATAGCCATTTGTTTATTTGCTTTCATGAAATAAAGTTATCTTGTACTCTCTCACACACACACCCTTCCCCCCCTCCCTTTGCGCTCTTGAACCATGTCAAGCACTTAGTTTGAATCTATTACTATTTGCAATTGAGGCTAAGTGGCTCTCCAAATTGAAATAGATGACTTCTTATGCCATTTCTCGGTATTGAGCATCTCTTGTACCTGCGAGGATTTTCTAGGTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGACGTAAGCATACTGTCTTCCAAATTTTTTTCTAGTTGTGCTATACCAATTTCATATGGTTTTCTTTGAATTGTTAGTTGCTACTTGTGCTATACCAATTTTATGTATGTTATGTCCCTAGTAAACTTGTATGACCTGCATGAGATTTGAATGGCAACTTCTCTGAAAGCAATTAAGCATAATCTTGTCTCCTTTCCCCTTTTGAATTTGTTCGTACATTAAAAATGACAATGTTGTCTACGTGACTGCTTTCTCAAATGATGAGGTCGAATCACTGAAAATGACTATCTGGCTACTTCGGCTTTTCTGATATAGTAATATCTACCAATCATTGAGCAAGTGCAAGTATGATTGCCATGCACCTAAAATTTCTCAATTTGTAGTTCAAACCCTCAAATGATAGTGTGTGTGTAACTTTGTCTTGTGTGTTCAAGAACCCAAATGGTAGATATAGGTCTGTGAAAGATGTTCATCTAACTAGATTATAGTTGATGTTAGTTTTATCAATAAATATATTTTGAAGACAAAATTCTAATTTATAGAAGTGTTACTTATTAAGTTTATTCGACCTTGGTTCTTTGGCCTGTTGTTTTCCATTCATAAAACAATGCGGTGATGAACGTTCTTTTTCCATCAAGCTGTATCGGTTAGAGAAAAAATTGATTTCTTTTAGAATTGATATTTTTTCTTTTCAGGTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAGGTTGCTGCTTGTCTATCTATCTATATAAACACCCTTGGTTTCTATCAAATTTTGAATGTCCCACTCTGATATAGCTCTCAAATATATGATTTCAACAGTTGACATTAATCCCGTTTTAATCAAATTTCCTGTTCACAGCATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGTGCCTGAGGCTGAAGTTAAAAGAAGACGAGATGAGGAGCTAAAGCCTGCACTAACCTTGCACGAACTTTCTGATTGGGCGAAGGAGAAGCTTGCCCCATACAAGGTATCACCCATACTTGTAGAGCTAATTCTTACTGTTGAGCTTATAAAGTCATGTTGGTCCTCCATATATTGAGCTTGGAAAACAAATTCCTTGTTCTAGTACAGTACATGACTGTTTGAATGATGAAGAAACATATAAACGTTGAATTACTTGGAGTAGGAAAACGGACTTCATGCTTGTTTGGTTGATTTTGTTGCTATGATTTGCTTTTCTTGCGATATGTTTTGGTATTGAAGTACTAAGGTGCTTAAGCTAATTCTTGCCACTTTATGACTGTAATCCAGATACCAACTCGTCTGTTTCTGTGGGAATCTCTGCCTCGAAATGCGATGGGAAAGGTGAGATATACCTACTTTTTGACTCCATAGTTTTTTTAGCTGTTTTTAGTAGTGAATAGATATTTGCCTCCCTATTTTCTTTCACTTGTGTTCTTTTTTAATATTTGAATTGAAATAATATTGGTTATAAACAGCAGATTTGATGTCCTTTTTCTGTGTACTAGGTAAACAAGAAAGAGCTAAAAAGGAAGCTGACTGAAGATCCCAAATGAGTCAGAAGATGGAGCATCAGAAAGTAAAATAATGCTTTAAGGTGTCACTCTATGTTCTTTTACACAAAAAAGGTCTTAAAAGAATATAAGTCCAGACAGTGACTGAAGTGAAAGTGCAATTAGTATATTAAATCTAGGAATTCTAATGAGAATTGAATTTAGAAAACATGTTAAGAGTTGATAAATGAATATCCAAGATAGGACAACTGAGCCCTACTAATTCTACTTGTGATTTGGAAGGATGTTGTCTTGTTGGACCTGAATATTGATTTTCTTCTGCTATCCCATTTCTATAATTGTAAAAAGTTATGAAATTTACT</genome_strand>
        <mrna_strand>TCAACCTGTGGCTAACCCAATCGGAAACCGACGCCGCCGATCCCGCCGGCGAGACCAACCCCCCAACCATAGACGTATTTGAACTATTTGGTTATTAACGAAGAAACCAAAAATTTCAACGAAGCCACATTTACTATGTCACGTAACATACAGTTGTGGCAACCAAAGCTGTTGGGTCGCCATAAATTGACATTTCTTGTTTTTTCTTTATAAAGAAATACTCCTCACCTAATAGTATGAGCACATTGAAAATTTTCAACTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCG................................................................................................................................................................................................................................................................................................................................................................................CTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACC..........................................................................................................................................................................................................................................................................GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG.......................................................................................................................................................................................................................................................................................................GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATG.................................................................................................................GCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATC....................................................................................................................................ATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACG..............................................................................................GTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGTACTATAACAGATAATGCCATTACGGTGTTTACTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATG..............................................................................................................................................................................................ATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAG........................................................................................TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG.................................................................................................................................................................GCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG.........................................................................................................................................................................................................................................................................................................GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAG..........................................................................................................................................CATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGTGCCTGAGGCTGAAGTTAAAAGAAGACGAGATGAGGAGCTAAAGCCTGCACTAACCTTGCACGAACTTTCTGATTGGGCGAAGGAGAAGCTTGCCCCATACAAG............................................................................................................................................................................................................................................................................................ATACCAACTCGTCTGTTTCTGTGGGAATCTCTGCCTCGAAATGCGATGGGAAAG....................................................................................................................................................................GTAAACAAGAAAGAGCTAAAAAGGAAGCTGACTGAAGATCCCAAATGAGTCAGAAGATGGAGCATCAGAAAGTAAAATAGTGCTTTAAGGTGTCACTCTATGTTCTTTTACACAAAAAAGGTCTTAAAAGAATATAAGTCCAGACAGTGACTGAAGTGAAAGTGCAATTAGTATATTAAATCTAGGAATTCTAATGAGAATTGAATTTAGAAAACATGTTAAGAGTTGATAAATGAATATCCAAGATAGGACAACTGAGCCCTACTAATTCTACTTGTGATTTGGAAGGATGTTGTCTTGTTGGACCTGAATATTGATTTTCTTCTGCTATCCCATTTCTATAATTGCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345983" ref_strand="+" ref_description="SGN-U345983        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 7e-09, score=58.9) genbank/nr: Integrase,(evalue: 1e-54, score=177)">
      <seq>cttttctccattctcttggcattattcatcacacatcttgcccctatactcctgaacaaaatggtgttgccgaacgcaaacaccgtcacctcattgaaaccgtcgtcactctccttcatgagtctcatctccctgcatgaggcgttggccactgccaactatctcatcaaccacatgcccaaaccctccctctctaacacatctccttatgaatgtctctacacacaccgttcggattacactcaccttcgcccctttggttgtcttgcctatccttggctacgccctcacactcaacacaaacttcaactccggtccacaccatgcatctttctaggctaccatccctccataaaaggatacaaatgttttgaacccatctctcaaaaaacatatgtctctcgtcatattcgttttatcgaggaggactttccctatccccggttaagttctgtcactgccacgtccaacccactcggtattactccaatctttccaccgagctcacatggccttgtaccagcacccattaacccatccatcatacacacaccacccaatcccaacactctcatcccatctggatcacccagcacccacaatttacccatcccaccaattttcaaccctcctcattaacaacctccaccagctgaaacagcaccacctccacccccacccccatcccctttacatcacatgcaaacctattccaaatccggcattttcaagcccaaagcctacaccaccactttacctgctccctctccctctgaacctattacctacaaacaagcatctaccaacccccttttggtgtcaggctaaggatgatgaatacaggtctcttattaatcaacatacttggcaattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="28127" stop="26648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27827" g_stop="26948" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-U345983" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27827" e_stop="26948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCCAATCTCTTGGCATTGTTCATCACACATCTTGCCCATATACTCCTGAACAAAATGGTGTTGCCGAACGCAAACACCGTCACCTCATTGAAACCGTTGTCACTCTTCTTCATGAGTCTCATCTCCCTGCACCTTTCTGGGTCGAGGCGTTGGCCACTGCCAACTATCTCATCAACCGCATGCCCACACCCTCCCTCTCTAACACATCTCCCTATGAATGTCTATACACACACCGTCCAGATTACACTCATCTTCGACCATTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACCCCGGTCTACACCATGCATCTTTCTAGGCTACCATCCCACCATAAAAGGATACAAATGTTTTGAACCCATCTCTCAAAAAACATATGTCTCTCGTCATGTTCGTTTTATCGAGGAGGATTTTCCCTATCCCCGGTTAAGCTCTGTCAATGCCATGTCCAACCCACTTGGTCTTATTCCAATCTTTCCACCGAGCTCGCATGGCCTTGTACCGGCATCCATTACCCCATCCATCATACACACACCACCCAATCCCAACCCTCTCATCCCATCCGGATCACCCACCACCCCCAATCCACCCATCCCACCAACTTTCAATCCTCCTCACCAACAATCTCCACCAGCCGAAACA--ACC-CCT---CCTCCACCCCCACCCCCTTTACATCATATGCAAACCCGTTCCAAATTCGGCATTTTCAAGCCCAAAGTCTACACCACCACTTCACTTGCTCCCTCTCCCTCTGAACCTACTACCTACAAACAAGCATCTACCAACCCCC-TTTGGTGTCAGGCTATGGATGATGAATACAGGTCTCTTATTAATCAGCATACTTGGGAATTGGT</genome_strand>
        <mrna_strand>CTTTTCTCCATTCTCTTGGCATTATTCATCACACATCTTGCCCCTATACTCCTGAACAAAATGGTGTTGCCGAACGCAAACACCGTCACCTCATTGAAACCGTCGTCACTCTCCTTCATGAGTCTCATCTCCCTGCA----------T-GAGGCGTTGGCCACTGCCAACTATCTCATCAACCACATGCCCAAACCCTCCCTCTCTAACACATCTCCTTATGAATGTCTCTACACACACCGTTCGGATTACACTCACCTTCGCCCCTTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACTCCGGTCCACACCATGCATCTTTCTAGGCTACCATCCCTCCATAAAAGGATACAAATGTTTTGAACCCATCTCTCAAAAAACATATGTCTCTCGTCATATTCGTTTTATCGAGGAGGACTTTCCCTATCCCCGGTTAAGTTCTGTCACTGCCACGTCCAACCCACTCGGTATTACTCCAATCTTTCCACCGAGCTCACATGGCCTTGTACCAGCACCCATTAACCCATCCATCATACACACACCACCCAATCCCAACACTCTCATCCCATCTGGATCACCCAGCACCCACAATTTACCCATCCCACCAATTTTCAACCCTCCTCATTAACAACCTCCACCAGCTGAAACAGCACCACCTCCACCCCCACCCCCATCCCCTTTACATCACATGCAAACCTATTCCAAATCCGGCATTTTCAAGCCCAAAGCCTACACCACCACTTTACCTGCTCCCTCTCCCTCTGAACCTATTACCTACAAACAAGCATCTACCAACCCCCTTTTGGTGTCAGGCTAAGGATGATGAATACAGGTCTCTTATTAATCAACATACTTGGCAATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344534" ref_strand="+" ref_description="SGN-U344534        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | metallo-beta-lactamase family protein | chr3:5509418-5513210 FORWARD | Aliases: MYA6.7(evalue: 7e-56, score=214) genbank/nr: gi|9279709|dbj|BAB01266.1| gb|AAF29402.1~gene_id:MYA6.7~strong similarity to unknown protein [Arabidopsis thaliana](evalue: 5e-54, score=214)">
      <seq>gatcctctgagacaaacactccactaattagtggtagtcatttagctgaagaccttcaagcacaatggatgaatctcacagctgaagtggaattaaatcctggtgagctttcggtggtttatatttgtgagtttccggagatcaaagggaagttctatccagataaggctgctgctctcggagtggaacctgggccaaaatatggtcaattgcaaagagggaattcggtggagtcagatcatcaaaatatcatagttcacccttgcgatgttatggagccttccactcacggtcctattgtgctccttgttgactgtccaacaccatctcatctgcaagagttgtcatctttgcagtctcttactccgttttactcgaatatatcaggacaacctgtcgaactgtgcaaaaaagtaaattgtttgatacaccttagccctgtgtcagtaacaaatacacccgcgtatgagcaatggatggccagatttggtgaagcccatcacataatggcacgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="40492" stop="39278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40192" g_stop="39939" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39938" i_stop="39843" i_length="96">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39842" g_stop="39578" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="519" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-U344534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40192" e_stop="39939"/>
          <exon e_start="39842" e_stop="39578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTCTGAGACAAACACTCCACTAATTAGTGGTAGTCATTTAGCTGAAGACCTTCAAGCACAATGGATGAATCTCACAGCTGAAGTGGAATTAAATCCTGGTGAGCTTTCGGTGGTTTATATTTGTGAGTTTCCGGAGATCAAAGGGAAGTTCTATCCAGATAAGGCTGCTGCTCTCGGAGTGGAACCTGGGCCAAAATATGGTCAATTGCAAAGAGGGAATTCGGTGGAGTCAGATCATCAAAATATCATAGTAAGTTAGGAAGATTCTTTCCAAAGTTTATCGTGGACTTCATAGTCTATCTCATTAAGTTCTCGGTGCTTTGCTTGCATTTTTTTCGCTGCACAGGTTCACCCTTGCGATGTTATGGAGCCTTCCACTCACGGTCCTATTGTGCTCCTTGTTGACTGTCCAACACCATCTCATCTGCAAGAGTTGTCATCTTTGCAGTCTCTTACTCCGTTTTACTCGAATATATCAGGACAACCTGTCGAACTGTGCAAAAAAGTAAATTGTTTGATACACCTTAGCCCTGTGTCAGTAACAAATACACCCGCGTATGAGCAATGGATGGCCAGATTTGGTGAAGCCCATCACATAATGGCACGACATG</genome_strand>
        <mrna_strand>GATCCTCTGAGACAAACACTCCACTAATTAGTGGTAGTCATTTAGCTGAAGACCTTCAAGCACAATGGATGAATCTCACAGCTGAAGTGGAATTAAATCCTGGTGAGCTTTCGGTGGTTTATATTTGTGAGTTTCCGGAGATCAAAGGGAAGTTCTATCCAGATAAGGCTGCTGCTCTCGGAGTGGAACCTGGGCCAAAATATGGTCAATTGCAAAGAGGGAATTCGGTGGAGTCAGATCATCAAAATATCATA................................................................................................GTTCACCCTTGCGATGTTATGGAGCCTTCCACTCACGGTCCTATTGTGCTCCTTGTTGACTGTCCAACACCATCTCATCTGCAAGAGTTGTCATCTTTGCAGTCTCTTACTCCGTTTTACTCGAATATATCAGGACAACCTGTCGAACTGTGCAAAAAAGTAAATTGTTTGATACACCTTAGCCCTGTGTCAGTAACAAATACACCCGCGTATGAGCAATGGATGGCCAGATTTGGTGAAGCCCATCACATAATGGCACGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339454" ref_strand="+" ref_description="SGN-U339454        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | metallo-beta-lactamase family protein | chr3:5509418-5513210 FORWARD | Aliases: MYA6.7(evalue: 8e-34, score=141) genbank/nr: gi|26449703|dbj|BAC41975.1| unknown protein [Arabidopsis thaliana](evalue: 7e-32, score=141)">
      <seq>cgtttaaattcaccggtggaaaaaaaaaaaagggaatcgttgtgtaaatttttgagtggaatggggaagaagaggaaaacaagggctgagggtaatcataataatgacaagccgaagaaaaaccctctaccggaagaagacgagctcaaaaaaactggtaataacaagtcatatatacagatcctaggaaatggcatggatactcaagatacatcaccctctgtcctcctcttttcggacaaatggaggtttttatttaacgcgggagaaggattgcaacgcttcttgacagagcataaaattacattgtcacagattgatcacctatttctatcacgtgtctgctcagaaactgttggtggactcccaggttggttatcaatgagcacaatatgaaagttaacttaagtgtctggatcaaactaacccttgagaagactctggcgtattgattgcagttgattaaaaccaccaaagaagttctattgttttacttgcaggtctcctattgactttggctgggatgggaaaagaagggatgtcagtaaatgtatcgggtcctccggatctttatctattggttaaagcaatggaatcattcatcccanattctgccatgggtcaaatagatagtgttctccgtaatggatcagatgaagttgctaccgcttcttcaagtaagtttgatcgtctttttgctcccattactgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44055" stop="39961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43757" g_stop="43578" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43577" i_stop="42760" i_length="818">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42759" g_stop="42670" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="270" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42669" i_stop="41041" i_length="1629">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41040" g_stop="40996" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="315" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40995" i_stop="40896" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40895" g_stop="40667" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="544" r_length="229" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40666" i_stop="40431" i_length="236">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40430" g_stop="40261" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="714" r_length="170" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-U339454" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43757" e_stop="43578"/>
          <exon e_start="42759" e_stop="42670"/>
          <exon e_start="41040" e_stop="40996"/>
          <exon e_start="40895" e_stop="40667"/>
          <exon e_start="40430" e_stop="40261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAGAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAACTGGTAATAACAAGTCATATATACAGGTAAGTTCAAAATGTGGTGATTTCTGTCAATTTAAGCAGGAAACTGAACTGGGTGTTACTCAACATAGAAAGAATAACAATGTAAATGGTATTGTAGTTTTGGAGATAGTTAAATTCAAAGAATAAAGTTTTCTGCTTTGTACTGATAAAAGGAAAATTTCTGAAGAAGTGTTGTTTATTTTGGTAGTTTGACATTTTTAATGTGTATTGTATGTACACTATATATGTGTGAAAAGATTTAGCAATTGATTAGAGCATAAAGTTCTGTCTTTTCTGTTAGTTTTGAATAATAACGTTTTGAATATTTTGCACCTAAGAGTGTGGCCTAGTGTGGCCCAGTGGTCCATTAATTGGTTGAGGTTCAAATCCCAGCATAGACAAAAAAAAAAAAAACGCTATGTGATTCTTCTATATGTCCTAAACTTGGTGGACAGAGTTAGAATTATGTACCTGTTCTGTCATAGACTTGGTGGACAGAGTTATGGACCTGTTGTTGCTGGTGGGAGGTGGCAATTATCGCGTGGAATTAGTGCAACTACGTGAAAGTATGCTCAGACACCACATTCATTAGAAAAACACTTTGAATGTTTCTTGTAGTAACTAAATCATTCAATATATTCACGGAAATTGTAAGAGTATTCATTAACTGTTTCGTTTTTCACAGTAAGGATGTTTGGTGTGGACAAATATCTTGTGTCCTTATAAATATGCATTTAACTTATATGTTCATTAATCATATCAAGTTTGTTATTCTAATTGCTTGCTTTCTCACCCCTCGGAAAAATTTAACTTCTTTTGATTCTTTAAATTTCACACAGATCCTAGGAAATGGCATGGATACTCAAGATACATCACCCTCTGTCCTCCTCTTTTCGGACAAATGGAGGTTTTTATTTAACGCGGGAGAAGTAAGTGTTTTTCAAGTTCCCTTCTGTAAATAACATTAGGGCGGTTGTTTGGTTTGCGAACTAGTTATGCAACAATAAAATGTGCATGGACTATTATATGGTGAACTGTTTTTGATAAATAAGAATGCGTTAATCGTTATGTAAAGTTTGAGATAACCATATCAAGAACTAGTTTAATTGTGCAATTGCTAAAACACATATTCTTATTGCGCATTCTATATTGTATAAAATATTGAATAAATTGACCATATAAGGTCTGTAGGTAATAGTTATTTGGAGTTTTCTGCCAGACGTTTTATGAGTAATGCGGAATTTTATATCGAAAACCATTAGTGTGATGTATTAACTATGTATTGCGTAACTATGATTTATTTTTCTGTACAACAAAATGGGTGATCCCTCAAGTGTGTGTTGCAGGTGGTTCTCATATTGTTCTAGTTGATACTATAAGTGCAGCATAGTTCTATTGTGAATCTATTTAGTTAGTTTGGCAATATCTCGATATCTATTTGATTGTACTTTGATTATAGTATCTATTTTGTTGTAGATACTGCTCCCTTTTGTCAGAATGTTTTTTCATGCCATCTTTAGTATTTTGGTCGTGGCTTCTTCACTTATGTTATTTCTTTTCCCGTAGTGTTTTGTTATGTGTTTTCTTGAGCATAGGGTCTATCGGAAACAACATCTCTACCTCCCAAGGCAGGGGGGTAAGGTTTGCGTACACACTATACTCCCCAGACCCCACTTGTGGGATTATACTGGGTATGTTGTTGTTGTTGACGATGATGATTGAGTATTATGGCCATTTTTTATTGCTTTTGTGAAGCTGGTAGACTAATTTGACCTAAAAAGATACCTAGTTTGCATTTAATTTTATATTGTTTATATAAAGTCTAAATCCAGCTATATTCTGTTAGAATGAGCATAATGCAGTAGAACGGTATAGAGGATCTATACAGCTGAATGCATCTAGATTCCTGTTGAGGCATAGTGGATTAAGTGCCCGTTTGGATTAACTTAATTTTTAGGTGCTTTTGACTTTTAAGTAGTTTTTTAGTTTTGGAGGTGTTTGAAAAGGTTATGAAGTGCTTTTAAGCACCCACTTTTAGGCCAGAAAAGTTCTAAAATAACGCAAAAGTCAAAAGTAAGGTACCATCTACTTATGACTTATAAATTACTTTTTATAAGCCCATCCAAACAAACCCTAATTGTTTGATCCACCTATTCTCGATTCTGTTGAATATATGTTTAGTAGATGAACGAGGAGGCATTTTTCTTGTAACAATAAAAAAATGATTTAGCTATTGTCTATGTCTTTATCATTGTTCTAGTAGGTTTCCTCTTCATAATATCCTTCAACAAATGTTTTCCACTTTTGTCCTTCTTGCTCTTCCTTGGTTCTCGTTGCCTTTGTAAAAAGAGGATTGCTGTAGATAAATTGGAAGAATAAAAAATGTACAGTTGGTTGTCTAGTGCGGTTACGTCTCTTGTGTGGTTTGTAAGCTATTGCATAGGAGCGGAGGTTTTATCCTGTGAACACTCAAAGGGTAGTAGCTGTTGATTTCCCTTGTCACAAAAAAAAGTACACTTGGACTTAGTTCTCAACACCTATTTATGTTTTGCTTGCAGGGATTGCAACGCTTCTTGACAGAGCATAAAATTACATTGTCACAGGTATTCAGATATATTATCTTGCTGTTGTAAACCTAATTATGTGTAAGTTACTTTGTTGCTGTTCTAGGGAAATACACATAAAAGTCTTTTTTTTAACCAGATTGATCACATATTTCTATCACGTGTCTGCTCAGAAACTGTTGGTGGACTCCCAGGTTGGTTATCAATGAGCACAATATGAAAGTTAACTTAACTGTCTGGATCAAACTAACCCTTGAGAAGACTCTGGCGTATTGATTGCAGTTGATTAAAACCACCAAAGAAGTTCTATTGTTTTACTTGCAGGTCTCCTATTGACTTTGGCTGGGATGGGAAAAGAAGGGATGTCAGTGAGTGTCTCATTAACTTATTTTACTTACTACTTATTCATCACAAATTTCATCGCTTTTCTTATTTGTATTTTTACTTTTATTGTTTTATACGTTATTAGCTTGAGATGAATTTAAATGGAGATAAATGGTCAGAGAGAATTCGTATAGTCGATCCCAGCTTGTTTAGGATTGAGGTGTTGTTGCTTACAAATGGAGTTTGAAAATTTGATACAGCTTATACCATTTGCTTGCAGGTAAATGTATCGGGTCCTCCGGATCTTTATCTATTGGTTAAAGCAATGGAATCATTCATCCCAAATTCTGCCATGGGTCAAATAGATAGTGTTCTCTGTAATGGATCAGATGAAGTTGCTAGCGCTTCTTCAAGTAAGTTTGATCGTCTTTTTGCTCCCATTACTGATGG</genome_strand>
        <mrna_strand>CGTTTAAATTCACCGGTGGAAAAAAAAAAAAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAACAAGGGCTGAGGGTAATCATAATAATGACAAGCCGAAGAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAACTGGTAATAACAAGTCATATATACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAGGAAATGGCATGGATACTCAAGATACATCACCCTCTGTCCTCCTCTTTTCGGACAAATGGAGGTTTTTATTTAACGCGGGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGCAACGCTTCTTGACAGAGCATAAAATTACATTGTCACAG....................................................................................................ATTGATCACCTATTTCTATCACGTGTCTGCTCAGAAACTGTTGGTGGACTCCCAGGTTGGTTATCAATGAGCACAATATGAAAGTTAACTTAAGTGTCTGGATCAAACTAACCCTTGAGAAGACTCTGGCGTATTGATTGCAGTTGATTAAAACCACCAAAGAAGTTCTATTGTTTTACTTGCAGGTCTCCTATTGACTTTGGCTGGGATGGGAAAAGAAGGGATGTCA............................................................................................................................................................................................................................................GTAAATGTATCGGGTCCTCCGGATCTTTATCTATTGGTTAAAGCAATGGAATCATTCATCCCANATTCTGCCATGGGTCAAATAGATAGTGTTCTCCGTAATGGATCAGATGAAGTTGCTACCGCTTCTTCAAGTAAGTTTGATCGTCTTTTTGCTCCCATTACTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339455" ref_strand="+" ref_description="SGN-U339455        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 2e-18, score=96.3)">
      <seq>ccgaaactaagaattcgccggtggaagagagaaagagggaatcgttgtgtaaatttttgagtggaatggggaagaagaggaaaagaagggctgagggtaatcatagtaatgacaagccgaagaaaaaccctctaccggaagaagacgagctcaaaaaaactggtaataacaagtcatatatacaggtaagttcaaaatgtggtgatttctgtcaatttaagcaggaaactgaactgggtgttactcaacatagaaagaataacaatgtaaatggtattgtagttttggagatagttaaattcaaagaataaagttttctgctttgtactgataaaaggaaaatttctgaagaagtgttgtttattttggtagtttgacatttttaatgtgtattgtatgtacactatatatgtgtgaaaagatttagcaattgattagagcataaagttctgtcttttctgttagttttgaataataacgttttgaatattttgcacctaagagtgtggcctagtgtggcccagtggtccattaattggttgaggttcaaatcccagcatagacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44062" stop="42889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43762" g_stop="43189" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-U339455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43762" e_stop="43189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAGAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAACTGGTAATAACAAGTCATATATACAGGTAAGTTCAAAATGTGGTGATTTCTGTCAATTTAAGCAGGAAACTGAACTGGGTGTTACTCAACATAGAAAGAATAACAATGTAAATGGTATTGTAGTTTTGGAGATAGTTAAATTCAAAGAATAAAGTTTTCTGCTTTGTACTGATAAAAGGAAAATTTCTGAAGAAGTGTTGTTTATTTTGGTAGTTTGACATTTTTAATGTGTATTGTATGTACACTATATATGTGTGAAAAGATTTAGCAATTGATTAGAGCATAAAGTTCTGTCTTTTCTGTTAGTTTTGAATAATAACGTTTTGAATATTTTGCACCTAAGAGTGTGGCCTAGTGTGGCCCAGTGGTCCATTAATTGGTTGAGGTTCAAATCCCAGCATAGACAAAAAAAAAA</genome_strand>
        <mrna_strand>CCGAAACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAGAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAACTGGTAATAACAAGTCATATATACAGGTAAGTTCAAAATGTGGTGATTTCTGTCAATTTAAGCAGGAAACTGAACTGGGTGTTACTCAACATAGAAAGAATAACAATGTAAATGGTATTGTAGTTTTGGAGATAGTTAAATTCAAAGAATAAAGTTTTCTGCTTTGTACTGATAAAAGGAAAATTTCTGAAGAAGTGTTGTTTATTTTGGTAGTTTGACATTTTTAATGTGTATTGTATGTACACTATATATGTGTGAAAAGATTTAGCAATTGATTAGAGCATAAAGTTCTGTCTTTTCTGTTAGTTTTGAATAATAACGTTTTGAATATTTTGCACCTAAGAGTGTGGCCTAGTGTGGCCCAGTGGTCCATTAATTGGTTGAGGTTCAAATCCCAGCATAGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330533" ref_strand="+" ref_description="SGN-U330533        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to hypothetical protein [Homo sapiens] (GB:CAI46079.1) | chr5:21413170-21415862 FORWARD | Aliases: None(evalue: 4e-17, score=58.9) genbank/nr: hypothetical(evalue: 3e-15, score=58.9)">
      <seq>tcgagcccaacatgaccgacccgtcccacactctttctccaaaacggcgcggcatctcttccctctcgcgaattcaaagtttcaaacagcaaagaagcttcaatgcagacacaggactaatatatagcagcaaaattgaaggttaaattggactcaattcacgctccaagtcgatgaactcttgaatgtaatgatcttcctccctgccgctgctgctgctgcctaatggacgacgttgatcgcttatttgaatgcttcaaatgcggcatttctccccctcaatcagcaataagagaaaggaaaaagggaaagcagactgtgaagcaaagtgatacattggaaaagctatcaacatcttcagatattttttcatcaagatcaaagggaaaggtccaaaatgcaacagatgttgagctctgcctacaaaattttcttgaattgtattgacaagtactatttttcaagcacatcccatgccggtggaaactactaactgaaattcaaagattcttcttgtagaccagttcatcaacaacaaagatacaaagtcttaagaaagcatcacagctctctcccctagtgttttatggttctccacatggagttcctccaaaaagacagctcgtttgttgcggctgttgaatgaaatccgtgtagactttaacgagcaacataaattaagccaagatatatgggccacatttccaagggcagatgaagcgatgaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="48553" stop="51168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48853" g_stop="48993" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48994" i_stop="49102" i_length="109">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49103" g_stop="49241" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="280" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49242" i_stop="50220" i_length="979">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50221" g_stop="50369" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="429" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50370" i_stop="50472" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50473" g_stop="50726" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="682" r_length="253" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50727" i_stop="50819" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50820" g_stop="50868" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="731" r_length="49" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-U330533" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48853" e_stop="48993"/>
          <exon e_start="49103" e_stop="49241"/>
          <exon e_start="50221" e_stop="50369"/>
          <exon e_start="50473" e_stop="50726"/>
          <exon e_start="50820" e_stop="50868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGCCCAACATGACCGACCCGTCCCACACTCTTTCTCCAAAACGGCGCGGCATCTCTTCCCTCTCGCGAATTCAAAGTTTCAAACAGCAAAGAAGCTTCAATGCAGACACAGGACTAATATATAGCAGCAAAATTGAAGGTATTTTGTTTTCAATCTATTCGAATCGATATCGAATTCTTAGTTTTTGCTAAAGCTTTGTAATTCAAGCGATTTTAGTTGAGAATGTGCTTTGACTGGTTATGTGAAGGTTAAATTGGACTCAATTCACGCTCCAAGTCGATGAACTCTTGAATGTAATGATCTTCCTCCCTGCCGCTGCTGCTGCTGCCTAATGGACGACGTTGATCGCTTATTTGAATGCTTCAAATGCGGCATTTCTCCCCCTCGTAATCGCTCTTCCCTTTACACTGCAATTATGTAAAACTTTTTTTTTTAATTTCCTCCCTATTTCCATTTGAAGAATAACATTTTGATGCCAAAAGGAAAATATTCGTAGTTGTAAAAAGTTTGTTTTTTTCTCAAAATTTGATCTTTTTTTTGGTTTACTGTGGTATGACTAGCCAAAGGGTTGTTTTGAACTATCTAAGATCTGTGTTTACCATTTTTTCCGAGTAATATCTGTATATTACATGTCAGAAATGCTTACAAGACTTGAATTTTGAGTATGGTCTATTTATAAAAAAATAGGGCTCAATAGCTGGTAAGAAAACTGCAGCAAATTTGGCAAGTATTAGAATATGGAATCCAGCTAGTGCGAAATTGAAGCCAAACAATGTTATACGAACATAAGTAATGGTAAGTTGTAAACAAAATAATAGGAGGCACAAATTCAACCAATGTGACCTACATCAACAAGCGGAGAGGAGCAAATTTATTCTAACAACCTGTACACAAAAGGGAGTACCAAATTAGAGATAGAACTTTAATTAATCCCAAAAATATATTCCAAACGAATACCTCACTGTTATCACTTACAAAGAAGAGTTTCTAAAAATTGGGGGATGATTTAAATGAAGGAAGAAGAACAATATTTATAGGGAAATTACTCTGCAAGTAAAGAAAAAGAATAAGAGAAAATACTTTTGTTCTTTGGCTCCAAGAACAATTGGTTCGCCATCACAAGTATTTTGCGTATGCCCAAATTTGGGTCATATCTTATGGAAAGAATCAAAGCCCAACTTTTTACATATGGTGCTGTATAGTGTGGTTTCTTTGCGATCTTAGGTCATAAACGAAAAAAATAGAAATATTTGAAAGTGCACCACAACTATTCCCTCAGTTGTTGTTTGACCACATTCTAAGTGAACTTTAATTTTGATATTTCTCTATTATGTGGTTGTTAATTGTTTCTTATACAAATTTTAGAATCAGCAATAAGAGAAAGGAAAAAGGGAAAGCAGACTGTGAAGCAAAGTGATACATTGGAAAAGCTATCAACATCTTCAGATATTTTTTCATCAAGATCAAAGGGAAAGGTCCAAAATGCAACAGATGTTGAGCTCTGCCTACAAAATGTACATATTGCTTTCGTTCCTTTATATGTTTCATTTTTTTCAAAATTTCATGGCTTCTTTTTCTTTCCCATTGATAATAAGCTTTACTTTCTTAAACACGTAGTTTCTTGAATTGTATTGACAAGTACTATTTTTCAAGCACATCCCATGCCGGTGGAAACTACTAACTGAAATTCAAAGATTCTTCTTGTAGACCAGTTCATCAACAACAAAGATACAAAGTCTTAAGAAAGCATCACAGCTCTCTCCCCTAGTGTTTTATGGTTCTCCACATGGAGTTCCTCCAAAAAGACCAGCTCGTTTGTTGCGGCTGTTGAATGAAATCCGTGTAGACTTTAACGAGCAACATAAATTAAGGTAATTGAAAAAGATTTTTATCACTTTACTCACTAGTATGGTTATGCAATTTGCTTTTTTTGAAAAAAAGTATTCTTCCTTGTGTTTAAACAGCCAAGATATATGGGCCACATTTCCAAGGCAAGATGAAGCGATGAAGTAT</genome_strand>
        <mrna_strand>TCGAGCCCAACATGACCGACCCGTCCCACACTCTTTCTCCAAAACGGCGCGGCATCTCTTCCCTCTCGCGAATTCAAAGTTTCAAACAGCAAAGAAGCTTCAATGCAGACACAGGACTAATATATAGCAGCAAAATTGAAG.............................................................................................................GTTAAATTGGACTCAATTCACGCTCCAAGTCGATGAACTCTTGAATGTAATGATCTTCCTCCCTGCCGCTGCTGCTGCTGCCTAATGGACGACGTTGATCGCTTATTTGAATGCTTCAAATGCGGCATTTCTCCCCCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCAATAAGAGAAAGGAAAAAGGGAAAGCAGACTGTGAAGCAAAGTGATACATTGGAAAAGCTATCAACATCTTCAGATATTTTTTCATCAAGATCAAAGGGAAAGGTCCAAAATGCAACAGATGTTGAGCTCTGCCTACAAAAT.......................................................................................................TTTCTTGAATTGTATTGACAAGTACTATTTTTCAAGCACATCCCATGCCGGTGGAAACTACTAACTGAAATTCAAAGATTCTTCTTGTAGACCAGTTCATCAACAACAAAGATACAAAGTCTTAAGAAAGCATCACAGCTCTCTCCCCTAGTGTTTTATGGTTCTCCACATGGAGTTCCTCCAAAAAGA-CAGCTCGTTTGTTGCGGCTGTTGAATGAAATCCGTGTAGACTTTAACGAGCAACATAAATTAAG.............................................................................................CCAAGATATATGGGCCACATTTCCAAGGGCAGATGAAGCGATGAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315103" ref_strand="+" ref_description="SGN-U315103        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: AT3G16240.1 | Symbol: None | delta tonoplast integral protein (delta-TIP), identical to delta tonoplast integral protein (delta-TIP) (GI:9279707)(GB:U39485) (Arabidopsis thaliana) (Plant Cell 8 (4), 587-599 (1996)) | chr3:5505430-5507056 FORWARD | Aliases: MYA6.10 (evalue: 1e-82, score=248) genbank/nr: gi|1439609|gb|AAB04557.1| delta-tonoplast intrinsic protein [Gossypium hirsutum] (evalue: 1e-87, score=265)">
      <seq>agcaagcaagcattttcttagtgtttattttactataattttttttttttgttataaatttaaaaaatgccttgcatagcttttggacgattcgatgattcattcagcttagggtctattaaggcctatattgctgaattcatctctactttgctctttgtcttcgccggagttggttcagctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctagtagctgttgcagtttgccatggattcgcactgttcgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctcctcaccggtctattttactggattgctcaacttttgggtgcaattgttggctgttaccttctcaaagttgtgactggaggaatggcggttccgatccacggtgtggctgctggagtaggagctgccgaaggagtggtgatggaaataatcattacatttgctttggtgtacacagtgtacgccacagcagctgacccatagcgatcggtttcattggtggtgctaatattttagctgcaggcccgttctctggaggttcaatgaacccagcccgttcatttggacccgctgtggttagtggaaactttgctggtatttggattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64202" stop="62399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63902" g_stop="63710" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="444" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62970" g_stop="62860" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="555" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62859" i_stop="62829" i_length="31">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62828" g_stop="62699" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="685" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-U315103" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63902" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
          <exon e_start="62970" e_stop="62860"/>
          <exon e_start="62828" e_stop="62699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATGGTAAGTTCTGTATTTTGCTGAATCGAAATTTATGTGGTATACATTGTTACAAAATTGTAAATTTTTTAATGATTAATCAGGCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGACCCGAAGAAGGGTTCATTGGGTACCATTGCACCCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTA</genome_strand>
        <mrna_strand>AGCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAATTTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTATATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG................................................................................GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGAC...............................CCATAGCGATCGGTTTCATTGGTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334974" ref_strand="+" ref_description="SGN-U334974        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G16240.1 | Symbol: None | delta tonoplast integral protein (delta-TIP), identical to delta tonoplast integral protein (delta-TIP) (GI:9279707)(GB:U39485) (Arabidopsis thaliana) (Plant Cell 8 (4), 587-599 (1996)) | chr3:5505430-5507056 FORWARD | Aliases: MYA6.10 (evalue: 6e-56, score=194) genbank/nr: gi|12006841|gb|AAG44945.1| putative delta TIP [Nicotiana glauca](evalue: 5e-59, score=211)">
      <seq>actataattttttttttgtagctataaatttaaaaaatgcctcccatatcttttggacgaatcgaagatacattcagcttagggtctattgaggcctatattgctgaattcaacactccttcactgttggtctaaaccggactgggacaatctattgcttacaacaaggtgacagctgatgctgctcttgatccgtctgggctaccatctgttgcagtttgccatggattcccactgtccgtggctgttgccattgctgctaatatctccggtggtcacgtcaaccctgccgtcacattcggattggctctcggtggccaaatcaccctactgaccggtctattttactggattgctcaacttttgggtgcaatcgttggctgttaccttctcaaagttgagactggaggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="64171" stop="62751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63871" g_stop="63710" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.821"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408">
            <donor d_prob="0.991" d_score="0.70"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63301" g_stop="63051" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="414" r_length="251" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-U334974" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63871" e_stop="63710"/>
          <exon e_start="63301" e_stop="63051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATAAATTTTTTTTT-TTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACAGTTAATAAAACTCAATCTTCCTCCTTAATTTACACACTTGTAATATTATATTATCACCGTATTTTAGCGTATCATAACCAGGAGCGGAGCTAGCCTTGTGTTAGCTGGGTTTCATCACCCTTCGCTGAAAAATAATATTTTTTATACATGATTAAAGTTATTTAGTTAATTCCTGTGTTTAATTCTTCAAATTTTGAATCTCCTTGTTAAAAATTCTAGTCCGCCACTAATAGTAACATTAAGTTATTGCTAATTTCAGTTAATATATGCATAGTTAACTATAGTTGCTTTTTAGGTGACGATATTAAATTCGTACGGTTTACCCTTTAAGTCCACATTGTTACTTTGGTCAGTTATAAATTTTGAATTCGTCTCTGGTTTCAAAATTTTGTAACGTATCAATTGCAGACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG</genome_strand>
        <mrna_strand>ACTATAATTTTTTTTTTGTAGCTATAAATTTAAAAAATGCCTCCCATATCTTTTGGACGAATCGAAGATACATTCAGCTTAGGGTCTATTGAGGCCTATATTGCTGAATTCAACACTCCTTCACTGTTGGTCTAAACCGGACTGGGACAATCTATTGCTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTACCATCTGTTGCAGTTTGCCATGGATTCCCACTGTCCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTACTGACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATCGTTGGCTGTTACCTTCTCAAAGTTGAGACTGGAGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="72338" stop="73115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72638" g_stop="72814" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72638" e_stop="72814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGTCATATCGATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="73819" stop="75131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74119" g_stop="74831" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74119" e_stop="74831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTATCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTGGAAACCATATGCCCCAAGAAGGACACTGTATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTACTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAATAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTCTTTGGCACATCCGTTGCCCATATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATACGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAATTCTTGAAGTTGTGCCTTTAACTCTCTTAGCTCTGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTCACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="74339" stop="75597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74639" g_stop="75297" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74639" e_stop="75297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATACGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAATTCTTGAAGTTGTGCCTTTAACTCTCTTAGCTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACGGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76435" stop="74427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76135" g_stop="75949" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75948" i_stop="75205" i_length="744">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75204" g_stop="74691" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76135" e_stop="75949"/>
          <exon e_start="75204" e_stop="74691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGAGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGACATCGACATCAAAGAGGTTTCGAAAGGGAGGAGATTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCTATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCTACCTCAGACCGGTCAACACTTCTCTGAGAGACCCATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGACCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCATCAAAGCGGACGGGGTGATGGGCAAACTGGATCCACTACATTACAACATGGTAGGGGCAACGGACAAACAAACAAAAGGGCCCATTGTTATGCTTTCCCTGGGCGGTCGGAAGCGGAGACATCAGATGTTGTCATCACAGGTAATCTTCTGGTTTGTAATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAAGTATATAGGTCTTGTTTGGTGAATTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTGGAAATGGATGATTTTGATGTAATTTTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAAATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCCGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGCTAAGAGAGTTAAAGGCACAACTTCAAGAATTATTGAACAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTGTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="74408" stop="75765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74708" g_stop="75465" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74708" e_stop="75465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAATTCTTGAAGTTGTGCCTTTAACTCTCTTAGCTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACGGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATTACAAACCAGAAGATTACCTGTGATGACAACATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="74811" stop="75737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75111" g_stop="75441" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75111" e_stop="75441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATTACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="75018" stop="76176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75318" g_stop="75876" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75318" e_stop="75876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATTACAAACCAGAAGATTACCTGTGATGACAACATCTGATGTCTCCGCTTCCGACCGCCCAGGGAAAGCATAACAATGGGCCCTTTTGTTTGTTTGTCCGTTGCCCCTACCATGTTGTAATGTAGTGGATCCAGTTTGCCCATCACCCCGTCCGCTTTGATGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTAGACCCCCAACTACAGTCTGTAGTGAAGACTGAATAGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAAATCTCC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="75022" stop="77058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75322" g_stop="76758" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75322" e_stop="76758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATTACAAACCAGAAGATTACCTGTGATGACAACATCTGATGTCTCCGCTTCCGACCGCCCAGGGAAAGCATAACAATGGGCCCTTTTGTTTGTTTGTCCGTTGCCCCTACCATGTTGTAATGTAGTGGATCCAGTTTGCCCATCACCCCGTCCGCTTTGATGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTAGACCCCCAACTACAGTCTGTAGTGAAGACTGAATAGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAAATCTCCTCCCTTTCGAAACCTCTTTGATGTCGATGTCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCTCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACTGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAACTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAACACCCTTGAAGACTGGAGGTTTCAATTTCAAGAAATTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATATGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGAAGGTGTTGGTGCAGAAAACACTGGAGGTGTCTGACCTTGATCAGACAACCCCCTAAGATAAGCGAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCGATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCTCT-TACTACTTCTTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="77062" stop="75909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76762" g_stop="76209" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76762" e_stop="76209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTGCAAAATGAGGAATCGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTCGCTTATCTTAGGGGGTTGTCTGATCAAGGTCAGACACCTCCAGTGTTTTCTGCACCAACACCTTCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCATATGGATGTCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAATTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGTTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGTTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCAGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76097" stop="77130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76397" g_stop="76829" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76397" e_stop="76829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAAATTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATATGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGAAGGTGTTGGTGCAGAAAACACTGGAGGTGTCTGACCTTGATCAGACAACCCCCTAAGATAAGCGAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCGATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="77296" stop="78232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77596" g_stop="77908" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77596" e_stop="77908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCATCTCAAAATAGAAATCGATATATACCAAGTAATATCATAAAATCAACTATGACACTCAACATGTAGCAACATCAAGCACTATATCATTAACAATTACCGTTAAGTTCACACATGAGGACTCAAGGCTTAATACCATAGTCATTTGGGAATTAAGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTAC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312346" ref_strand="+" ref_description="SGN-U312346        Tomato 200607 #1 [25 ESTs aligned] arabidopsis/peptide: | Symbol: None | photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2), identical to SP:Q9SUI6; similar to PSI-H precursor (Nicotiana sylvestris) GI:407355; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI | chr1:19458505-19459337 FORWARD | Aliases: F9I5.11, F9I5_11(evalue: 4e-40, score=161) genbank/nr: gi|407355|dbj|BAA04634.1| PSI-H precursor [Nicotiana sylvestris] (evalue: 2e-50, score=201)">
      <seq>aacccaataactacctaaaaactaatttagtttgtgtgaggtaaattcaaggatggcatctttggcaactcttgctgctgtgcagcccacaagtggcctagctggaagctccattgctggaactaagctacatgttaaatcatctcgccttaatgtcaagtctactaaatccaggtctgcttctgtggttgcaaagtatggtgacaagagtgtatattttgatttagaggacttgggcaacaccactggtcagtgggacttgtatggctcagatgcaccctcaccatacaactcccttcagagcaagttcttcgagacctttgctgctcctttcaccaagagaggactgttgcttaaattcttgatactgggaggtggctcaactcttgcatacttcagttcaacagcatcaggggatatactaccaattaagaaagggccgcaacttccacccaagcttggtccacgcggaaagatctaatttcttttcaatcaagctttctcaaccttcattttgtaattgatgtatctgtcgtcagcttgtaagtattcttgaagcctacaacatgagacctttgttacaagaagttaaatcttatggcattcggtttatcctgttgcaaagtttgagcttgttttctaacatggtgtcgatcttatgacattcaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="80218" stop="82668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80518" g_stop="80691" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81615" g_stop="81741" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="301" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82001" g_stop="82367" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="668" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="679"/>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-U312346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80518" e_stop="80691"/>
          <exon e_start="81615" e_stop="81741"/>
          <exon e_start="82001" e_stop="82367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAGGTATATGTCGAAGGCTAGTCAGTTGAACATCCTTTTTCAAAAATGTATGTTGTGTATACAAGTTAAATATTACCTTTTATACATATATATATATATTAAATGTTAAATTACTAACTTAGCTACTGCTCATAATGTATAGAAGTTAATTAAACTCATATACTAAGGATGTATCAGGTTGCTAATCTCACTTATTGTATCACTATTCTCTCACCAAAAAATATTCGGTGGCTATTCTCATTGATATATTGATACTCGCTGTTATTTATCTTTTAGATGCTCAGATGGTGTAAATATTTATGTTAAACTGATGATATATAGGAGAATTTACTCTTAACTTGGCGTCAACCGACAATTATGACATTTAACTTTGAATGTGCATAAGTAAATATTTAAATTTATATATTGAACAAATAGACACATTCGTCGTGACTCGTGCATGTCACCCTACATGGAAAATTTGTATTCTACATGGCGTCCTATAGTGTATTATGTCATGTAGGATATGTGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTTCCTACTTGTGCACACTCAAAGTTGGAGGGCGTAGTTGTTTGTTAAAACCAAGTTAAGGGTAATTGTTCATGTATTATGTGATTTATATAGGAGTGTATTTAACTTATTGTGGAAAGTCACTTGCCTTATTTCTTACATTTGATAATATCACTTATGATGAAGATTCACTTATAATTATCTTGATCTGATTAGTGTAAAAAAAGAATTTATACTGTTAATATATAGAATTTAAACTCGATCTTAACATTCTGGTACGGAAGCATAGTTCGTGCAACAGTATAGTAGCAATCAGTTGTATTCAATAAAAGAAAGGCACTCTGTAGAAGTAAGCGTGTCTTTTTATTTGATCGTTGTAATCTGATTGATTATACATATTTGCTAGGTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAGGTATATATTTGATCTTTTACCCTTTAAACACATTCTTTTGTGGAAGCACACTTATTCTAGATATATGTGTTATAAAATTTTCAATGAACACACAGTTAGAGTCGAATGCACCAACTACTTTGCATCCACCACTGCTTAAGCTAAGTGATCATTAAGAGTTTGCTTGTTATGCTTGGAAGGAATGATTGAGTCTGTGTAAGCTCGGAAGTTGGTTGAGTTATTGTGGTAACTTTGTCTTGTATTGTGTTGTGTTTTGTAGAGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCA</genome_strand>
        <mrna_strand>AACCCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG...................................................................................................................................................................................................................................................................AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341539" ref_strand="+" ref_description="SGN-U341539        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: ATROPGEF8 | Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. | chr3:8980702-8982800 REVERSE | Aliases: MOB24.21, KINASE PARTNER PROTEIN-LIKE, KPP-LIKE, ATROPGEF8(evalue: 5e-11, score=62.8) genbank/nr: pollen-specific(evalue: 2e-61, score=236)">
      <seq>ggcacgagagaaagctattcaagaataatagagagcagggcgcacacagtgatgtcacggattgaagatgttctccaagtagatgctacggcccaaaatccttcctgtgctgatctgaagaggtctcctttaagagattcactacgggtatcaccatcaggcagcttcccaaatgctagggaagaagtagaaaagcttaacgctgcagagaatccaacgtcaatgacattgttggatttcatgggttggacagtagaacaaggagataatgacacaaagaaagatgtgaaggaggatatagacgtcgatgcaaagaaaccacctagttatagtttacnaacaagaaactttcttacttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="83556" stop="82607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83264" g_stop="82907" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-U341539" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83264" e_stop="82907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTTTAGAAAGCTATTCAAGAATAATAGAGAGCAGGGCGCACACAGTGATGTCACGGATTGAAGATGTTCTCCAAGTAGATGCTACGGCCCAAAATCCTTCCTGTGCTGATCTGAAGAGGTCTCCTTTAAGAGATTCACTACGGGTATCACCATCAGGCAGCTTCCCAAATGCTAGGGAAGAAGTAGAAAAGCTTAACGCTGCAGAGAATCCAACGTCAATGACATTGTTGGATTTCATGGGTTGGACAGTAGAACAAGGAGATAATGACACAAAGAAAGATGTGAAGGAGGATATAGACGTCGATGCAAAGAAACCACCTAG-TATAG-TTACAAACAAGAAACTTTCTTACTTAG</genome_strand>
        <mrna_strand>GGCACGAGAGAAAGCTATTCAAGAATAATAGAGAGCAGGGCGCACACAGTGATGTCACGGATTGAAGATGTTCTCCAAGTAGATGCTACGGCCCAAAATCCTTCCTGTGCTGATCTGAAGAGGTCTCCTTTAAGAGATTCACTACGGGTATCACCATCAGGCAGCTTCCCAAATGCTAGGGAAGAAGTAGAAAAGCTTAACGCTGCAGAGAATCCAACGTCAATGACATTGTTGGATTTCATGGGTTGGACAGTAGAACAAGGAGATAATGACACAAAGAAAGATGTGAAGGAGGATATAGACGTCGATGCAAAGAAACCACCTAGTTATAGTTTACNAACAAGAAACTTTCTTACTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327994" ref_strand="+" ref_description="SGN-U327994        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: ATROPGEF8 | Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. | chr3:8980702-8982800 REVERSE | Aliases: MOB24.21, KINASE PARTNER PROTEIN-LIKE, KPP-LIKE, ATROPGEF8(evalue: 7e-13, score=69.7) genbank/nr: gi|57869094|gb|AAW57535.1| pollen-specific kinase partner protein [Lycopersicon esculentum] (evalue: 5e-12, score=72.8)">
      <seq>attgtttttccttcttttcacctcctctttatatccgtttcctcaagaacaattatatttattgcattgtcactagtgtaacgtatttcaattcagcttgaatcaaaaagatggttcgagcagcgcttgaggaagcgaaagaaatgtgcaaggcaaagttgttgcatttcaaaggaaaatctgaagatgttattattgagactagtaatactagtgattctggggatgaattggccacatcgaaaagtgaagatcagcctgtgtttagtcgcagtgagtctattatgatgcgaccaaacgagacccctgttgtctctagcccacccacgaaacagggaccaccttcagatatggagctgatgagggaaaaatttgcaaagttgttgctcggcgaggatatgtctggtggaggaaagggtgtgtcttctgcgttggcattgtcaaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85794" stop="84607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85494" g_stop="85143" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85142" i_stop="85007" i_length="136">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85006" g_stop="84907" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="448" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-U327994" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85494" e_stop="85143"/>
          <exon e_start="85006" e_stop="84907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTTTCCTTCTTTTCACCTCCTCTTTATATCCGTTTCCTCAAGAACAATTATATCTATTGCATTGTCACTAGTGTAACATACCTATTTCAATTCAGCTTGAATCAAAAAGATGGTTCGAGCAGCGCTTGAGGAAGCGAAAGAAATGTGCAAGGCAAAGTTGTTGCATTTCAAAGGAAAATCTGAAGATGTTATTATTGAGACTAGTAATACTAGTGACTCTGGGGATGAATTGGCCACATCGAAAAGTGAAGATCAGCCTGTGTTTAGTCGCAGTGAGTCTGTTATGATGCGACCAAACGAGACCCCTGTTGTCTCTAGCCCACCCGCGAAACAGGGCCCACCTTCAGGCAAGATATTTGTTGCAATTAAATAACTACCTGCATTGTACATTATAACAACAATTACGCCTCACTAGTTAACAAAGGGAGTTTAGATCTCTGTTTCCCCTCTCTCTGCATTCCATGTGATACTTTTTCTATATAGATATGGAGCTGATGAGGGAAAAATTTGCAAAGTTGTTGCTTGGCGAGGATATGTCTGGTGGAGGAAAGGGTGTGTCTTCTGCGTTGGCATTGTCAAACGC</genome_strand>
        <mrna_strand>ATTGTTTTTCCTTCTTTTCACCTCCTCTTTATATCCGTTTCCTCAAGAACAATTATATTTATTGCATTGTCACTAGTGTAACGTA--T-TT-CAATTCAGCTTGAATCAAAAAGATGGTTCGAGCAGCGCTTGAGGAAGCGAAAGAAATGTGCAAGGCAAAGTTGTTGCATTTCAAAGGAAAATCTGAAGATGTTATTATTGAGACTAGTAATACTAGTGATTCTGGGGATGAATTGGCCACATCGAAAAGTGAAGATCAGCCTGTGTTTAGTCGCAGTGAGTCTATTATGATGCGACCAAACGAGACCCCTGTTGTCTCTAGCCCACCCACGAAACAGGGACCACCTTCAG........................................................................................................................................ATATGGAGCTGATGAGGGAAAAATTTGCAAAGTTGTTGCTCGGCGAGGATATGTCTGGTGGAGGAAAGGGTGTGTCTTCTGCGTTGGCATTGTCAAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342303" ref_strand="+" ref_description="SGN-U342303        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | oxidoreductase family protein, contains Pfam profile: PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; similar to glyoxylate reductase from Thermococcus litoralis (gi:13515409) | chr1:30049639-30050920 FORWARD | Aliases: F19K16.17, F19K16_17(evalue: 2e-104, score=376) genbank/nr: putative(evalue: 9e-109, score=396)">
      <seq>ctcatatagaagaaaaatggaatctataggagtactaatggcgtgtccaatgtcatcatacttagaacaacaactcgataatcgattcaacctcatacgttactggaacttctccgataagaaacaattcatcaacgactacgctcattcaatacgtgctgttgtgggaaacgctgctgctggtgctgatgcagagcttatcgaggcgttgcctcagctagaaattgtggctagtttcagtgttggtttagataagattgatttgaacaagtgtaaagagaagggtattagagtgactaatacaccagatgtgttaactgaggatgttgctgatcttgctattggattaatgttggctgtgctaaggaggatttgcgagtctgatcgatatgttaagaagggattgtggaaggctggtgatttcgcgttgacttctaagtttagtggcaaaagagttggtatcataggattagggaggattggcttagcaattgcaaagagagcagaggcttttgattgtccaatcagttactacgcgcgatcagaaaagacaaatacgaattacaaatactatccaactgtagtagaactcgctaccaattgtgagatcctggttgtggcgtgtgcactaactcctgagactcgttacattgtcaaccgcgaagtgattgatgcattaggtgcaaaagggattcttatcaacattggaaggggacctcatgttgatgaaaaagagatggtatcttctcttcttgatggtcgattangaggcgctggccttgatgtgtttgagaatgaacctgaagtccctgataatctgttcggccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="89011" stop="90679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89309" g_stop="89747" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89748" i_stop="89988" i_length="241">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89989" g_stop="90379" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="830" r_length="391" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-U342303" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89309" e_stop="89747"/>
          <exon e_start="89989" e_stop="90379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATATAGAAGAAAAATGGAATCTATAGGAGTACTAATGGCGTGTCCAATGTCATCATACTTAGAACAACAACTCGATAATCGATTCAACCTCATACGTTACTGGAACTTCTCCGATAAGAAACAATTCATCAACGACTACGCTCATTCAATACGTGCTGTTGTGGGAAACGCTGCTGCTGGTGCTGATGCAGAGCTTATCGAGGCGTTGCCTCAGCTAGAAATTGTGGCTAGTTTCAGTGTTGGTTTAGATAAGATTGATTTGAACAAGTGTAAAGAGAAGGGTATTAGAGTGACTAATACACCAGATGTGTTAACTGAGGATGTTGCTGATCTTGCTATTGGATTAATATTGGCTGTGCTAAGGAGGATTTGCGAGTCTGATCGATATGTGAAGAAGGGATTGTGGAAGGCTGGTGATTTCGCGTTGACTTCTAAGGTTAGTGTTCTTTTTGTTTCATTTTATATGACGATATTTATGACAGATCGAGCTTGAGATATTAGTTTGATTGGTGGAAGAAGATGTTTAAGCAATAGATGATAGGTTACATTGACAAATGACAATTATGGGTTTTAAACATATAATTATGCTCCGAGTCAAAAGTATTGGGCTCAAATGAACCAGATACCGGCTACACTTACACCAACATTTACCTGATTCATCGTTTTTTCTTTTGCAGTTTAGTGGCAAAAGAGTTGGTATCATAGGATTAGGGAGGATTGGCTTAGCAATTGCAAAGAGAGCAGAGGCTTTTGATTGTCCAATCAGTTACTACGCGCGATCAGAAAAGACAAATACGAATTACAAATACTATCCAACTGTAGTAGAACTCGCTACCAATTGTGAGATCCTGGTTGTGGCGTGTGCACTAACTCCTGAGACTCGTTACGTTGTCAACCGCGAAGTGATTGATGCATTAGGTGCAAAAGGGATTCTTATCAACATTGGAAGGGGACCTCATGTTGATGAAAAAGAGATGGTATCTTCTCTTCTTGATGGTCGATTAGGGGGCGCTGGCCTTGATGTGTTTGAGAATGAACCTGAAGTCCCTGATAATCTGTTCGGCCTTG</genome_strand>
        <mrna_strand>CTCATATAGAAGAAAAATGGAATCTATAGGAGTACTAATGGCGTGTCCAATGTCATCATACTTAGAACAACAACTCGATAATCGATTCAACCTCATACGTTACTGGAACTTCTCCGATAAGAAACAATTCATCAACGACTACGCTCATTCAATACGTGCTGTTGTGGGAAACGCTGCTGCTGGTGCTGATGCAGAGCTTATCGAGGCGTTGCCTCAGCTAGAAATTGTGGCTAGTTTCAGTGTTGGTTTAGATAAGATTGATTTGAACAAGTGTAAAGAGAAGGGTATTAGAGTGACTAATACACCAGATGTGTTAACTGAGGATGTTGCTGATCTTGCTATTGGATTAATGTTGGCTGTGCTAAGGAGGATTTGCGAGTCTGATCGATATGTTAAGAAGGGATTGTGGAAGGCTGGTGATTTCGCGTTGACTTCTAAG.................................................................................................................................................................................................................................................TTTAGTGGCAAAAGAGTTGGTATCATAGGATTAGGGAGGATTGGCTTAGCAATTGCAAAGAGAGCAGAGGCTTTTGATTGTCCAATCAGTTACTACGCGCGATCAGAAAAGACAAATACGAATTACAAATACTATCCAACTGTAGTAGAACTCGCTACCAATTGTGAGATCCTGGTTGTGGCGTGTGCACTAACTCCTGAGACTCGTTACATTGTCAACCGCGAAGTGATTGATGCATTAGGTGCAAAAGGGATTCTTATCAACATTGGAAGGGGACCTCATGTTGATGAAAAAGAGATGGTATCTTCTCTTCTTGATGGTCGATTANGAGGCGCTGGCCTTGATGTGTTTGAGAATGAACCTGAAGTCCCTGATAATCTGTTCGGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339745" ref_strand="+" ref_description="SGN-U339745        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgggcccccctcgagtttttttttttttttttttcaccaaacgtaagaaagagttatcaatcttaccgttaaacaatagtcctctattgctcaacaagcctaagtagaaaaacaatctacccactaagctatcccacttggacaacctagacttttacacaacacaccaattcctttatagatttagcagtggtttacaatttaacaacaagagaataaattcctaaacaactatacgacaagctcaagatgttgctgttgttcttggaatgattctaccttttgtgtagcctttgcaagtgttcttgaaaagtttttatcaagttgcaaaaactaaaaaacaaatgttttggaaagtgccttttatgtgggcaagtcactttcctaaactcctttgccatttgctgaaaaggtcacacttttctgacgccatcgggaagtgtgcacctactttctgtaccatctccagctggcagtcgactgactcattttcatgagagcctggtacctctactaggtccctggttttgtttcttctgcaatacctcaaacaagacacctgcaatacacaattagagaacctgatacctttatgaggtcccattgtttgtcaaatcatcaaaactacaaataacatttacagttaaagtaacatttgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="-" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="145111" stop="97851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99316" g_stop="99287" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.433"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99286" i_stop="98772" i_length="515">
            <donor d_prob="0.737" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98771" g_stop="98153" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="646" r_length="616" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="-" ref_id="SGN-U339745" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99316" e_stop="99287"/>
          <exon e_start="98771" e_stop="98153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACAGACCAGAAGAGTTTTAGCTTTGAAGCCCTTTTCAATCTTTTTCCTGTCAGCATCATCATATTTCTGCCTGGGCTTTGGAACAGTGATGGTCTTTTCTCCATCCTTTACTTCCATCATTGGAACAAAGGGTCCATCTAGTATAATATCCCATAACTCGCTATCTTCAGCCATGAGATAATCGTGCATTCTAACTTTCCACCAACTGTAGAAATGTCCATTGAAACGAGGAGGTCTGTGTGATGACTGACCTTCTTCGAGGTTAAGTGGAGCTGCCATTCTAGAACAAAATCACTTCCTTGGTGTTAACCAAATAGGTAGTGCCTGCTCTGATACCACTTGATAGAATGTATGACTTCACTTACTAAGTAATGGACCAGGTCCGTTACTTTACTTCAGAAAATTATCAGAAAGTTAAATGCAGTAAAATCAACACAATGATTTTACGTGGAAACCTCCTTGCTTAAGGGAGTAAAACCACGACCTGTCTCACAGGGTTTTCAATCATTTTCACTAATCTTCAAAAGCAAAAGCGAAACAAGATTACACCAAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAACAGTCCTCTATTGCTCAACAAGCCTAAGTAGAAAAACAATCTACCCACTAAGCTATCCTAACTGGACAACTTAGACTTTATCACAACACACCAATTCCTTTATAGTTTTAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTTGGAATAATTCTGCCTTTGCTTTGTGTAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACT--ACAACAAATGTTTAGGAAAATGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGCTGGAAAGGTCACACTTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTACAGCTGGCAGTCGACTGGCTCATCATCATGAGAGTCTGGTACCTCTACTAGGTCCCTGGGTTTGTTTCATCTGCAATACTTCAAACAAGACACCTGCAATACTCAAGTAGAAAACCCTGTACCTTTATGAGGTCCCTAAGTTTGTCAAATCATCAAAACTACAAATAACAATACCATAAA</genome_strand>
        <mrna_strand>CGGGCCCCCCTCGAGTTTTTTTTTTTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCACC-AAACGTAAGAAAGAGTTATCAATCTTACCGTTAAACAATAGTCCTCTATTGCTCAACAAGCCTAAGTAGAAAAACAATCTACCCACTAAGCTATCCCACTTGGACAACCTAGACTTTTACACAACACACCAATTCCTTTATAGATTTAGCAGTGGTTTACAATTTAACAACAAGAGAATAAATTCCTAAACAACTATACGACAAGCTCAAGATGTTGCTGTTGTTCTTGGAATGATTCTACC--T--TTTGTGTAGCCTTTGCAAGTGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTAAAAAACAAATGTTTTGGAAAGTGCCTTTTATGTGGGCAAGTCACTTTCCTAAACTCCTTTGCCATTTGCTGAAAAGGTCACACTTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTACCATCTCCAGCTGGCAGTCGACTGACTCATTTTCATGAGAGCCTGGTACCTCTACTAGGTCCCTGGTTTTGTTTCTTCTGCAATACCTCAAACAAGACACCTGCAATACACAATTAGAGAACCTGATACCTTTATGAGGTCCCATTGTTTGTCAAATCATCAAAACTACAAATAACATTTACAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kgBhjz/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339744" ref_strand="-" ref_description="SGN-U339744        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0266F15-DPMwz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0266F15.1" temp_strand="+" temp_description="C12HBa0266F15.1  AC216401.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0266F15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98029" stop="145108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107114" g_stop="107599" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107600" i_stop="109292" i_length="1693">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109293" g_stop="109309" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="501" r_length="17" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0266F15.1" gen_strand="+" ref_id="SGN-U339744" ref_strand="-">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0266F15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339744" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107114" e_stop="107599"/>
          <exon e_start="109293" e_stop="109309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAAGTGTGACCTTTCCAGCCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCATTTTCCTAAACA-TTTGTTGTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACACAAAGCAAAGGCAGAATTATTCCAAGGACAACAGCAACATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGATGTGTTGTGAT-AAAGTCTAAGTTGTCCAGTTAGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTGAGCAATAGAGGACTGTTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTTGGTGTAATCGTGTTTCGCTTTTACTTTTGAAGATTAGTGAAAACGATTGAAAATCCTGTGAGACAGGTCGTGGTTTTACTCCCTTAAGCAAGGAGGTTTCCACGTAAAATCATTGTGTTAATTTTACTGCATTTAACTTTCTGATAATTTTCTGAAGTAAAGTAACGGACCTGGTCCATTACTTAGTAAGTGAAGGCATACATTCTATCAAGTATCATTCGGACGAATACGAAATCAAATCTAAATACAAATTATTTGGTATACAAAGTGATATTGGAAATAAACAAAATAAAATACACATGTAAGATTGATGAATACATATATCATGAATACATGAGTTCTGAATATTGGACAATTTCTTAAATAGAGAAACTATCTTGAATATGTTAGCAACTTTAAAGAAACTATCTTAATAAATAATGTTCTATCACTCTTATAATATGTAAAAAGTTAAAATTAAGTTGAACCCGCATAAAATCGGATAGACTCGCAACCCACCCCACTCCTCATTAGTTTTTCAAAAGAAAAAATTAGCAAACTAGTCAGAATCCTTAACTTAATTAGTAAAAATATCTACACTTTAAAATAATTATTGAATGTCAAAATGTCAATATTTTAGAAAATAATTTGTATTCAAATTTTATTTTTTAAAACAGTCCAACTTTGAATCAAATTCTACATCCATTACCTATTTACACTTCTTCCTATGCTTTAGTACCATTAAATTTATTTTTCATCTTTCACTTTTCACTTTTTTCTTTTATCAAAATTTCACCATTATTCTCTCTCATTGTTGAAGAAGAATTAAATATTCAAATTTAACAATTTGTTCAGATCTATCAATTAATCAAGAGATCTCTCAATTGATAAAGGTATTTTTGAATTCATCATTTATTTTTCGAGATTTGTTTTCAAAATCATACATAATGTTCAATTTTTTGGGTTGTATGTATTGAGGATTTTTCATCATTTTTTTTTAATTTTTATGTGAGTTTGTTAACATATTCATCAAATATTTATGTACTTTAGATTTTTAGAGTTTAAAATAATTTTTGTCGATCTTTTTTTATGATATGTTTTTATATTTCAAATTTAGTAGAATCCACATAAGCATTTAGGTATTGAGTTATTTTGTAAAAGTATTTGAAAGTATTTTGAATGTTCTGTAGTTTGTAGTCAAATTTATTTTTACAAAGTGAAAATCTTAATACAAATCTATATTTGATTATTTAAAATTGTGAATGAATACGAACCAAAGATAAACTAGTTGGTACAAACATATAATGAGCAAAATAAAATACAAAACTATTGGACTAATGCAACACATAATGAATACATAAATAAACTATATTTTGGCTATTTATAGTTGAGAATGAATACGAAATCAAAATATAAATACAAAACTTTATGGTATACATTAGGACGACTACGAAATCAAATTTAAATACAAACTTTATGGTATACATTAGGACGAATACGAAATCAAATCTAAATCCAAATTATTTGGTATACAAAGTGATATTGGAAATAAACAAAATAAAAATACATATGTAAGATGGATGACTACATATATCATGAATACATGAGTTCTGAATATTGGAAAAATTCTTAAATAGAGATACAAATAACTTCATAAAATTTCAGACATTTTCAAAGATAAATTATAATTTCATAACGTCAAAATAATGCCTTAGTAGAATAAAATGGTTCAAATATGATAATGTATGGTAAATTAACGTGTTTAGAAACAAAAAAAATAAGA</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAG-AAA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTCTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACG-TTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>25</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3719" PGL_stop="10487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3719" e_stop="4090"/>
            <exon e_start="4459" e_stop="4628"/>
            <exon e_start="4895" e_stop="5068"/>
            <exon e_start="5364" e_stop="5547"/>
            <exon e_start="5661" e_stop="5749"/>
            <exon e_start="6280" e_stop="6349"/>
            <exon e_start="6482" e_stop="6534"/>
            <exon e_start="6629" e_stop="6736"/>
            <exon e_start="7332" e_stop="7430"/>
            <exon e_start="7621" e_stop="7713"/>
            <exon e_start="7802" e_stop="7879"/>
            <exon e_start="8041" e_stop="8145"/>
            <exon e_start="8443" e_stop="8533"/>
            <exon e_start="9226" e_stop="9299"/>
            <exon e_start="9438" e_stop="9617"/>
            <exon e_start="9902" e_stop="9955"/>
            <exon e_start="10120" e_stop="10487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.845" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.989" e_score="0.991"/>
          <exon-intron don_prob="0.980" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.724" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.689" acc_prob="0.353" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="3719" e_stop="4090" e_length="372"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="4091" i_stop="4458" i_length="368"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4459" e_stop="4628" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="4629" i_stop="4894" i_length="266"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4895" e_stop="5068" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.988">
            <gDNA_intron_boundary i_start="5069" i_stop="5363" i_length="295"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5364" e_stop="5547" e_length="184"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.944">
            <gDNA_intron_boundary i_start="5548" i_stop="5660" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5661" e_stop="5749" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.845" acc_prob="0.981">
            <gDNA_intron_boundary i_start="5750" i_stop="6279" i_length="530"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6280" e_stop="6349" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6350" i_stop="6481" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6482" e_stop="6534" e_length="53"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.967">
            <gDNA_intron_boundary i_start="6535" i_stop="6628" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="6629" e_stop="6736" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.828" acc_prob="0.989">
            <gDNA_intron_boundary i_start="6737" i_stop="7331" i_length="595"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="7332" e_stop="7430" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="0.980" acc_prob="0.930">
            <gDNA_intron_boundary i_start="7431" i_stop="7620" i_length="190"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="7621" e_stop="7713" e_length="93"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="7714" i_stop="7801" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="7802" e_stop="7879" e_length="78"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7880" i_stop="8040" i_length="161"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="8041" e_stop="8145" e_length="105"/>
          </exon>
          <intron i_serial="12" don_prob="0.724" acc_prob="0.737">
            <gDNA_intron_boundary i_start="8146" i_stop="8442" i_length="297"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="8443" e_stop="8533" e_length="91"/>
          </exon>
          <intron i_serial="13" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8534" i_stop="9225" i_length="692"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="9226" e_stop="9299" e_length="74"/>
          </exon>
          <intron i_serial="14" don_prob="0.689" acc_prob="0.353">
            <gDNA_intron_boundary i_start="9300" i_stop="9437" i_length="138"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="9438" e_stop="9617" e_length="180"/>
          </exon>
          <intron i_serial="15" don_prob="0.959" acc_prob="0.838">
            <gDNA_intron_boundary i_start="9618" i_stop="9901" i_length="284"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="9902" e_stop="9955" e_length="54"/>
          </exon>
          <intron i_serial="16" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9956" i_stop="10119" i_length="164"/>
          </intron>
          <exon e_serial="17" e_score="0.967">
            <gDNA_exon_boundary e_start="10120" e_stop="10487" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3719" stop="4090"/>
              <exon start="4459" stop="4628"/>
              <exon start="4895" stop="5068"/>
              <exon start="5364" stop="5547"/>
              <exon start="5661" stop="5749"/>
              <exon start="6280" stop="6349"/>
              <exon start="6482" stop="6534"/>
              <exon start="6629" stop="6736"/>
              <exon start="7332" stop="7430"/>
              <exon start="7621" stop="7713"/>
              <exon start="7802" stop="7879"/>
              <exon start="8041" stop="8145"/>
              <exon start="8443" stop="8533"/>
              <exon start="9226" stop="9299"/>
              <exon start="9438" stop="9617"/>
              <exon start="9902" stop="9955"/>
              <exon start="10120" stop="10487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317537" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACCTGTGGCTAACCCAATCGGAAACCGACGCCGCCGATCCCGCCGGCGAGACCAACCCCCCAACCATAGACGTATTTGAACTATTTGGTTATTAATGAAGAAACCAAAAATTTCAACGAAGCCACATTTACTATGTCACGTAACATACAGTTGTGGCAACCAAAGCTGTTGGGTCGCCATAAATTGACATTTCTTGTTTTTTCTTTATAAAGAAATACTCCTCACCTAATAGTATGAGCACATTGAAAATTTTCAACTACTTTCTCAGTTCTAAGGCCACACCTCTGCACTCTTTATATATTCAGTATCATTTTTCGTGTCAAAGATATCATAGCTTTATCTCCTCGCAACTTCGCCTCTTATCCTCCG : CTACAAGTAGTATAAGCTATATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATATTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCTGCAGTTGATTTCATCTGCAAGGAGAATTTCAAGTTTGTTAAGCAAGCTAGATCTTAAAACC : GACAAAGGCATCAAAGAAAATGAACATCACAAAGGAGCAAGAGTAGGGATTGTGTCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGAACCTGGCTTAGTGGAGGTTGTGCAGTTCCTCTTGCTCTGAGCTATCCTGAGAGTGAACTGCTACATGTGATGAATGACTCG : GACATCTCCATAATTTTGAGTACTGAAGACCACCAAGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTGTCTCTCATTCCTTCAATTCCTGATGTGCATTCATCAACAAAACATGACCAATCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAGATCAATTCTTATG : GCGAGAACCCTGCTTTTATCTTGTACACCAGCGGCACAACAGGGAAACCAAAAGGAGTTGTGCACACACACAATGGAGTCTTAGCACAG : GTCCAAATGTTAGCTAATGCATGGGAATACACGCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATC : ATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCACG : GTCGACTTCGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAACAGATAATGCCATTACGGTGTTTACTGGA : GTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCTTCTGCTTCAGCAGCAAGGCACTTGCGCCTTATG : ATGAGTGGCTCCTCTGCACTTCCTCTGCCCGTCATGCAGCAGTGGGAAACCATTACTGGACACCGGTTATTGGAACGTTATGGCATGACTGAG : TTTGTGATGGCAATCTCTAATCCCATAAACGGCAAGCGCAAAGGAGGTACTGTTGGCAAGCCATTTCCAGGTGTGCAG : GCCAAGATTCTTTTGGACGATGCGAGTAGCAATGACCAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCCATCACTGTTCAAAGAATACTGGAAATTACCTGAG : GTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTACTGTTGACGAAGAGGGGTATTACATCATTCTAGGAC : GTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTATCAGCGTTGGAAATTGAAGCAGTTCTGTTGGAG : CATCAAGCTATATTAGAGTGCTGTGTTTTAGGCTTGCCTGACAAAGACTATGGCGAAGTGGTATGTGCAATAGTTGTGCCTGAGGCTGAAGTTAAAAGAAGACGAGATGAGGAGCTAAAGCCTGCACTAACCTTGCACGAACTTTCTGATTGGGCGAAGGAGAAGCTTGCCCCATACAAG : ATACCAACTCGTCTGTTTCTGTGGGAATCTCTGCCTCGAAATGCGATGGGAAAG : GTAAACAAGAAAGAGCTAAAAAGGAAGCTGACTGAAGATCCCAAATGAGTCAGAAGATGGAGCATCAGAAAGTAAAATAATGCTTTAAGGTGTCACTCTATGTTCTTTTACACAAAAAAGGTCTTAAAAGAATATAAGTCCAGACAGTGACTGAAGTGAAAGTGCAATTAGTATATTAAATCTAGGAATTCTAATGAGAATTGAATTTAGAAAACATGTTAAGAGTTGATAAATGAATATCCAAGATAGGACAACTGAGCCCTACTAATTCTACTTGTGATTTGGAAGGATGTTGTCTTGTTGGACCTGAATATTGATTTTCTTCTGCTATCCCATTTCTATAATTGTAAAAAGTTATGAAATTTACT</gDNA_template>
            <first_frame> S  T  C  G  *  P  N  R  K  P  T  P  P  I  P  P  A  R  P  T  P  Q  P  *  T  Y  L  N  Y  L  V  I  N  E  E  T  K  N  F  N  E  A  T  F  T  M  S  R  N  I  Q  L  W  Q  P  K  L  L  G  R  H  K  L  T  F  L  V  F  S  L  *  R  N  T  P  H  L  I  V  *  A  H  *  K  F  S  T  T  F  S  V  L  R  P  H  L  C  T  L  Y  I  F  S  I  I  F  R  V  K  D  I  I  A  L  S  P  R  N  F  A  S  Y  P  P  :  L  Q  V  V  *  A  I  W  S  W  S  R  K  L  P  A  R  D  L  N  R  R  R  I  L  R  *  E  L  M  K  R  A  T  V  T  C  S  *  F  H  L  Q  G  E  F  Q  V  C  *  A  S  *  I  L  K  P :   T  K  A  S  K  K  M  N  I  T  K  E  Q  E  *  G  L  C  P  N  L  L  L  S  S  L  L  E  Y  *  E  P  G  L  V  E  V  V  Q  F  L  L  L  *  A  I  L  R  V  N  C  Y  M  *  *  M  T  R :   T  S  P  *  F  *  V  L  K  T  T  K  N  L  *  M  Q  L  Q  Q  K  L  V  L  S  C  L  S  F  L  Q  F  L  M  C  I  H  Q  Q  N  M  T  N  Q  K  T  W  F  L  T  V  N  K  I  C  *  R  S  I  L  M  :  A  R  T  L  L  L  S  C  T  P  A  A  Q  Q  G  N  Q  K  E  L  C  T  H  T  M  E  S  *  H  R :   S  K  C  *  L  M  H  G  N  T  R  P  R  I  N  F  C  I  V  Y  H  S  I  :  M  C  M  D  F  S  M  L  C  L  P  L  F  M  Q  V  P  R :   S  T  S  C  Q  N  S  V  *  G  E  F  G  R  D  G  V  N  H  I  L  Q  M  G  L  *  Q  I  M  P  L  R  C  L  L  E :   F  Q  L  C  M  H  D  *  Y  K  V  M  K  Q  W  I  Q  N  *  K  Q  L  L  L  Q  Q  Q  G  T  C  A  L  * :   *  V  A  P  L  H  F  L  C  P  S  C  S  S  G  K  P  L  L  D  T  G  Y  W  N  V  M  A  *  L  S :   L  *  W  Q  S  L  I  P  *  T  A  S  A  K  E  V  L  L  A  S  H  F  Q  V  C  R :   P  R  F  F  W  T  M  R  V  A  M  T  K  L  E  L  G  S  S  A  L  R  A  H  H  C  S  K  N  T  G  N  Y  L  R :   *  P  S  S  H  L  L  M  M  D  I  S  R  L  E  I  L  L  L  L  T  K  R  G  I  T  S  F  *  D  :  V  Q  M  L  I  L  *  S  L  V  D  T  N  Y  Q  R  W  K  L  K  Q  F  C  W  S :   I  K  L  Y  *  S  A  V  F  *  A  C  L  T  K  T  M  A  K  W  Y  V  Q  *  L  C  L  R  L  K  L  K  E  D  E  M  R  S  *  S  L  H  *  P  C  T  N  F  L  I  G  R  R  R  S  L  P  H  T  R :   Y  Q  L  V  C  F  C  G  N  L  C  L  E  M  R  W  E  R :   *  T  R  K  S  *  K  G  S  *  L  K  I  P  N  E  S  E  D  G  A  S  E  S  K  I  M  L  *  G  V  T  L  C  S  F  T  Q  K  R  S  *  K  N  I  S  P  D  S  D  *  S  E  S  A  I  S  I  L  N  L  G  I  L  M  R  I  E  F  R  K  H  V  K  S  *  *  M  N  I  Q  D  R  T  T  E  P  Y  *  F  Y  L  *  F  G  R  M  L  S  C  W  T  *  I  L  I  F  F  C  Y  P  I  S  I  I  V  K  S  Y  E  I  Y  </first_frame>
            <second_frame>  Q  P  V  A  N  P  I  G  N  R  R  R  R  S  R  R  R  D  Q  P  P  N  H  R  R  I  *  T  I  W  L  L  M  K  K  P  K  I  S  T  K  P  H  L  L  C  H  V  T  Y  S  C  G  N  Q  S  C  W  V  A  I  N  *  H  F  L  F  F  L  Y  K  E  I  L  L  T  *  *  Y  E  H  I  E  N  F  Q  L  L  S  Q  F  *  G  H  T  S  A  L  F  I  Y  S  V  S  F  F  V  S  K  I  S  *  L  Y  L  L  A  T  S  P  L  I  L  R :   Y  K  *  Y  K  L  Y  G  A  G  Q  G  S  C  Q  Q  G  T  *  I  A  E  E  Y  C  D  K  S  *  *  K  E  L  Q  L  P  A  V  D  F  I  C  K  E  N  F  K  F  V  K  Q  A  R  S  *  N   : R  Q  R  H  Q  R  K  *  T  S  Q  R  S  K  S  R  D  C  V  Q  T  F  C  *  V  R  C  W  N  T  R  N  L  A  *  W  R  L  C  S  S  S  C  S  E  L  S  *  E  *  T  A  T  C  D  E  *  L   : G  H  L  H  N  F  E  Y  *  R  P  P  R  T  Y  E  C  N  C  S  K  N  W  C  S  V  V  S  H  S  F  N  S  *  C  A  F  I  N  K  T  *  P  I  K  R  H  G  F  *  R  S  T  R  S  A  R  D  Q  F  L  W :   R  E  P  C  F  Y  L  V  H  Q  R  H  N  R  E  T  K  R  S  C  A  H  T  Q  W  S  L  S  T   : G  P  N  V  S  *  C  M  G  I  H  A  Q  G  S  I  S  A  L  S  T  T  P  S :   C  A  W  T  F  Q  C  F  A  C  P  S  L  C  R  F  H   : G  R  L  R  A  K  I  Q  C  E  G  N  L  A  E  M  A  *  I  I  S  Y  R  W  D  Y  N  R  *  C  H  Y  G  V  Y  W   : S  S  N  Y  V  C  T  I  D  T  R  L  *  S  N  G  S  R  T  K  N  S  F  C  F  S  S  K  A  L  A  P  Y   : D  E  W  L  L  C  T  S  S  A  R  H  A  A  V  G  N  H  Y  W  T  P  V  I  G  T  L  W  H  D  *   : V  C  D  G  N  L  *  S  H  K  R  Q  A  Q  R  R  Y  C  W  Q  A  I  S  R  C  A   : G  Q  D  S  F  G  R  C  E  *  Q  *  P  N  W  S  W  G  A  L  H  *  E  P  I  T  V  Q  R  I  L  E  I  T  *   : G  N  Q  A  V  I  Y  *  *  W  I  F  Q  D  W  R  Y  C  Y  C  *  R  R  G  V  L  H  H  S  R  T :   Y  K  C  *  Y  Y  E  V  W  W  I  Q  I  I  S  V  G  N  *  S  S  S  V  G   : A  S  S  Y  I  R  V  L  C  F  R  L  A  *  Q  R  L  W  R  S  G  M  C  N  S  C  A  *  G  *  S  *  K  K  T  R  *  G  A  K  A  C  T  N  L  A  R  T  F  *  L  G  E  G  E  A  C  P  I  Q   : D  T  N  S  S  V  S  V  G  I  S  A  S  K  C  D  G  K   : G  K  Q  E  R  A  K  K  E  A  D  *  R  S  Q  M  S  Q  K  M  E  H  Q  K  V  K  *  C  F  K  V  S  L  Y  V  L  L  H  K  K  G  L  K  R  I  *  V  Q  T  V  T  E  V  K  V  Q  L  V  Y  *  I  *  E  F  *  *  E  L  N  L  E  N  M  L  R  V  D  K  *  I  S  K  I  G  Q  L  S  P  T  N  S  T  C  D  L  E  G  C  C  L  V  G  P  E  Y  *  F  S  S  A  I  P  F  L  *  L  *  K  V  M  K  F  T </second_frame>
            <third_frame>   N  L  W  L  T  Q  S  E  T  D  A  A  D  P  A  G  E  T  N  P  P  T  I  D  V  F  E  L  F  G  Y  *  *  R  N  Q  K  F  Q  R  S  H  I  Y  Y  V  T  *  H  T  V  V  A  T  K  A  V  G  S  P  *  I  D  I  S  C  F  F  F  I  K  K  Y  S  S  P  N  S  M  S  T  L  K  I  F  N  Y  F  L  S  S  K  A  T  P  L  H  S  L  Y  I  Q  Y  H  F  S  C  Q  R  Y  H  S  F  I  S  S  Q  L  R  L  L  S  S   : A  T  S  S  I  S  Y  M  E  L  V  K  E  V  A  S  K  G  P  E  S  Q  K  N  I  A  I  R  A  D  E  K  S  Y  S  Y  L  Q  L  I  S  S  A  R  R  I  S  S  L  L  S  K  L  D  L  K  T  :  D  K  G  I  K  E  N  E  H  H  K  G  A  R  V  G  I  V  S  K  P  S  A  E  F  V  A  G  I  L  G  T  W  L  S  G  G  C  A  V  P  L  A  L  S  Y  P  E  S  E  L  L  H  V  M  N  D  S  :  D  I  S  I  I  L  S  T  E  D  H  Q  E  L  M  N  A  I  A  A  K  T  G  A  Q  L  S  L  I  P  S  I  P  D  V  H  S  S  T  K  H  D  Q  S  K  D  M  V  S  D  G  Q  Q  D  L  L  E  I  N  S  Y   : G  E  N  P  A  F  I  L  Y  T  S  G  T  T  G  K  P  K  G  V  V  H  T  H  N  G  V  L  A  Q  :  V  Q  M  L  A  N  A  W  E  Y  T  P  K  D  Q  F  L  H  C  L  P  L  H   : H  V  H  G  L  F  N  A  L  L  A  P  L  Y  A  G  S  T  :  V  D  F  V  P  K  F  S  V  R  G  I  W  Q  R  W  R  E  S  Y  P  T  D  G  T  I  T  D  N  A  I  T  V  F  T  G  :  V  P  T  M  Y  A  R  L  I  Q  G  Y  E  A  M  D  P  E  L  K  T  A  S  A  S  A  A  R  H  L  R  L  M  :  M  S  G  S  S  A  L  P  L  P  V  M  Q  Q  W  E  T  I  T  G  H  R  L  L  E  R  Y  G  M  T  E  :  F  V  M  A  I  S  N  P  I  N  G  K  R  K  G  G  T  V  G  K  P  F  P  G  V  Q  :  A  K  I  L  L  D  D  A  S  S  N  D  Q  T  G  V  G  E  L  C  I  K  S  P  S  L  F  K  E  Y  W  K  L  P  E  :  V  T  K  Q  S  F  T  D  D  G  Y  F  K  T  G  D  T  V  T  V  D  E  E  G  Y  Y  I  I  L  G   : R  T  N  A  D  I  M  K  F  G  G  Y  K  L  S  A  L  E  I  E  A  V  L  L  E  :  H  Q  A  I  L  E  C  C  V  L  G  L  P  D  K  D  Y  G  E  V  V  C  A  I  V  V  P  E  A  E  V  K  R  R  R  D  E  E  L  K  P  A  L  T  L  H  E  L  S  D  W  A  K  E  K  L  A  P  Y  K  :  I  P  T  R  L  F  L  W  E  S  L  P  R  N  A  M  G  K  :  V  N  K  K  E  L  K  R  K  L  T  E  D  P  K  *  V  R  R  W  S  I  R  K  *  N  N  A  L  R  C  H  S  M  F  F  Y  T  K  K  V  L  K  E  Y  K  S  R  Q  *  L  K  *  K  C  N  *  Y  I  K  S  R  N  S  N  E  N  *  I  *  K  T  C  *  E  L  I  N  E  Y  P  R  *  D  N  *  A  L  L  I  L  L  V  I  W  K  D  V  V  L  L  D  L  N  I  D  F  L  L  L  S  H  F  Y  N  C  K  K  L  *  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3904" stop="4090"/>
                    <exon start="4459" stop="4628"/>
                    <exon start="4895" stop="5068"/>
                    <exon start="5364" stop="5547"/>
                    <exon start="5661" stop="5749"/>
                    <exon start="6280" stop="6349"/>
                    <exon start="6482" stop="6534"/>
                    <exon start="6629" stop="6736"/>
                    <exon start="7332" stop="7430"/>
                    <exon start="7621" stop="7713"/>
                    <exon start="7802" stop="7879"/>
                    <exon start="8041" stop="8145"/>
                    <exon start="8443" stop="8533"/>
                    <exon start="9226" stop="9299"/>
                    <exon start="9438" stop="9617"/>
                    <exon start="9902" stop="9955"/>
                    <exon start="10120" stop="10167"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1854</number_coding_nucleotides>
                  <number_encoded_amino_acids>618</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDISCFFFIKKYSSPNSMSTLKIFNYFLSSKATPLHSLYIQYHFSCQRYHSFISSQLRLLSSATSSISYMELVKEVASKGPESQKNIAIRADEKSYSYLQLISSARRISSLLSKLDLKTDKGIKENEHHKGARVGIVSKPSAEFVAGILGTWLSGGCAVPLALSYPESELLHVMNDSDISIILSTEDHQELMNAIAAKTGAQLSLIPSIPDVHSSTKHDQSKDMVSDGQQDLLEINSYGENPAFILYTSGTTGKPKGVVHTHNGVLAQVQMLANAWEYTPKDQFLHCLPLHHVHGLFNALLAPLYAGSTVDFVPKFSVRGIWQRWRESYPTDGTITDNAITVFTGVPTMYARLIQGYEAMDPELKTASASAARHLRLMMSGSSALPLPVMQQWETITGHRLLERYGMTEFVMAISNPINGKRKGGTVGKPFPGVQAKILLDDASSNDQTGVGELCIKSPSLFKEYWKLPEVTKQSFTDDGYFKTGDTVTVDEEGYYIILGRTNADIMKFGGYKLSALEIEAVLLEHQAILECCVLGLPDKDYGEVVCAIVVPEAEVKRRRDEELKPALTLHELSDWAKEKLAPYKIPTRLFLWESLPRNAMGKVNKKELKRKLTEDPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="27827" PGL_stop="26948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27827" e_stop="26948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="27827" e_stop="26948" e_length="880"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27827" stop="26948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345983" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTCTCCAATCTCTTGGCATTGTTCATCACACATCTTGCCCATATACTCCTGAACAAAATGGTGTTGCCGAACGCAAACACCGTCACCTCATTGAAACCGTTGTCACTCTTCTTCATGAGTCTCATCTCCCTGCACCTTTCTGGGTCGAGGCGTTGGCCACTGCCAACTATCTCATCAACCGCATGCCCACACCCTCCCTCTCTAACACATCTCCCTATGAATGTCTATACACACACCGTCCAGATTACACTCATCTTCGACCATTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACCCCGGTCTACACCATGCATCTTTCTAGGCTACCATCCCACCATAAAAGGATACAAATGTTTTGAACCCATCTCTCAAAAAACATATGTCTCTCGTCATGTTCGTTTTATCGAGGAGGATTTTCCCTATCCCCGGTTAAGCTCTGTCAATGCCATGTCCAACCCACTTGGTCTTATTCCAATCTTTCCACCGAGCTCGCATGGCCTTGTACCGGCATCCATTACCCCATCCATCATACACACACCACCCAATCCCAACCCTCTCATCCCATCCGGATCACCCACCACCCCCAATCCACCCATCCCACCAACTTTCAATCCTCCTCACCAACAATCTCCACCAGCCGAAACAACCCCTCCTCCACCCCCACCCCCTTTACATCATATGCAAACCCGTTCCAAATTCGGCATTTTCAAGCCCAAAGTCTACACCACCACTTCACTTGCTCCCTCTCCCTCTGAACCTACTACCTACAAACAAGCATCTACCAACCCCCTTTGGTGTCAGGCTATGGATGATGAATACAGGTCTCTTATTAATCAGCATACTTGGGAATTGGT</gDNA_template>
            <first_frame> L  F  S  N  L  L  A  L  F  I  T  H  L  A  H  I  L  L  N  K  M  V  L  P  N  A  N  T  V  T  S  L  K  P  L  S  L  F  F  M  S  L  I  S  L  H  L  S  G  S  R  R  W  P  L  P  T  I  S  S  T  A  C  P  H  P  P  S  L  T  H  L  P  M  N  V  Y  T  H  T  V  Q  I  T  L  I  F  D  H  L  V  V  L  P  I  L  G  Y  A  L  T  L  N  T  N  F  N  P  G  L  H  H  A  S  F  *  A  T  I  P  P  *  K  D  T  N  V  L  N  P  S  L  K  K  H  M  S  L  V  M  F  V  L  S  R  R  I  F  P  I  P  G  *  A  L  S  M  P  C  P  T  H  L  V  L  F  Q  S  F  H  R  A  R  M  A  L  Y  R  H  P  L  P  H  P  S  Y  T  H  H  P  I  P  T  L  S  S  H  P  D  H  P  P  P  P  I  H  P  S  H  Q  L  S  I  L  L  T  N  N  L  H  Q  P  K  Q  P  L  L  H  P  H  P  L  Y  I  I  C  K  P  V  P  N  S  A  F  S  S  P  K  S  T  P  P  L  H  L  L  P  L  P  L  N  L  L  P  T  N  K  H  L  P  T  P  F  G  V  R  L  W  M  M  N  T  G  L  L  L  I  S  I  L  G  N  W  </first_frame>
            <second_frame>  F  S  P  I  S  W  H  C  S  S  H  I  L  P  I  Y  S  *  T  K  W  C  C  R  T  Q  T  P  S  P  H  *  N  R  C  H  S  S  S  *  V  S  S  P  C  T  F  L  G  R  G  V  G  H  C  Q  L  S  H  Q  P  H  A  H  T  L  P  L  *  H  I  S  L  *  M  S  I  H  T  P  S  R  L  H  S  S  S  T  I  W  L  S  C  L  S  L  A  T  P  S  H  S  T  Q  T  S  T  P  V  Y  T  M  H  L  S  R  L  P  S  H  H  K  R  I  Q  M  F  *  T  H  L  S  K  N  I  C  L  S  S  C  S  F  Y  R  G  G  F  S  L  S  P  V  K  L  C  Q  C  H  V  Q  P  T  W  S  Y  S  N  L  S  T  E  L  A  W  P  C  T  G  I  H  Y  P  I  H  H  T  H  T  T  Q  S  Q  P  S  H  P  I  R  I  T  H  H  P  Q  S  T  H  P  T  N  F  Q  S  S  S  P  T  I  S  T  S  R  N  N  P  S  S  T  P  T  P  F  T  S  Y  A  N  P  F  Q  I  R  H  F  Q  A  Q  S  L  H  H  H  F  T  C  S  L  S  L  *  T  Y  Y  L  Q  T  S  I  Y  Q  P  P  L  V  S  G  Y  G  *  *  I  Q  V  S  Y  *  S  A  Y  L  G  I  G </second_frame>
            <third_frame>   F  L  Q  S  L  G  I  V  H  H  T  S  C  P  Y  T  P  E  Q  N  G  V  A  E  R  K  H  R  H  L  I  E  T  V  V  T  L  L  H  E  S  H  L  P  A  P  F  W  V  E  A  L  A  T  A  N  Y  L  I  N  R  M  P  T  P  S  L  S  N  T  S  P  Y  E  C  L  Y  T  H  R  P  D  Y  T  H  L  R  P  F  G  C  L  A  Y  P  W  L  R  P  H  T  Q  H  K  L  Q  P  R  S  T  P  C  I  F  L  G  Y  H  P  T  I  K  G  Y  K  C  F  E  P  I  S  Q  K  T  Y  V  S  R  H  V  R  F  I  E  E  D  F  P  Y  P  R  L  S  S  V  N  A  M  S  N  P  L  G  L  I  P  I  F  P  P  S  S  H  G  L  V  P  A  S  I  T  P  S  I  I  H  T  P  P  N  P  N  P  L  I  P  S  G  S  P  T  T  P  N  P  P  I  P  P  T  F  N  P  P  H  Q  Q  S  P  P  A  E  T  T  P  P  P  P  P  P  P  L  H  H  M  Q  T  R  S  K  F  G  I  F  K  P  K  V  Y  T  T  T  S  L  A  P  S  P  S  E  P  T  T  Y  K  Q  A  S  T  N  P  L  W  C  Q  A  M  D  D  E  Y  R  S  L  I  N  Q  H  T  W  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27825" stop="26950"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLQSLGIVHHTSCPYTPEQNGVAERKHRHLIETVVTLLHESHLPAPFWVEALATANYLINRMPTPSLSNTSPYECLYTHRPDYTHLRPFGCLAYPWLRPHTQHKLQPRSTPCIFLGYHPTIKGYKCFEPISQKTYVSRHVRFIEEDFPYPRLSSVNAMSNPLGLIPIFPPSSHGLVPASITPSIIHTPPNPNPLIPSGSPTTPNPPIPPTFNPPHQQSPPAETTPPPPPPPLHHMQTRSKFGIFKPKVYTTTSLAPSPSEPTTYKQASTNPLWCQAMDDEYRSLINQHTWEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="40192" PGL_stop="39578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40192" e_stop="39939"/>
            <exon e_start="39842" e_stop="39578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.868" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40192" e_stop="39939" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.868">
            <gDNA_intron_boundary i_start="39938" i_stop="39843" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39842" e_stop="39578" e_length="265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40192" stop="39939"/>
              <exon start="39842" stop="39578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCCTCTGAGACAAACACTCCACTAATTAGTGGTAGTCATTTAGCTGAAGACCTTCAAGCACAATGGATGAATCTCACAGCTGAAGTGGAATTAAATCCTGGTGAGCTTTCGGTGGTTTATATTTGTGAGTTTCCGGAGATCAAAGGGAAGTTCTATCCAGATAAGGCTGCTGCTCTCGGAGTGGAACCTGGGCCAAAATATGGTCAATTGCAAAGAGGGAATTCGGTGGAGTCAGATCATCAAAATATCATA : GTTCACCCTTGCGATGTTATGGAGCCTTCCACTCACGGTCCTATTGTGCTCCTTGTTGACTGTCCAACACCATCTCATCTGCAAGAGTTGTCATCTTTGCAGTCTCTTACTCCGTTTTACTCGAATATATCAGGACAACCTGTCGAACTGTGCAAAAAAGTAAATTGTTTGATACACCTTAGCCCTGTGTCAGTAACAAATACACCCGCGTATGAGCAATGGATGGCCAGATTTGGTGAAGCCCATCACATAATGGCACGACATG</gDNA_template>
            <first_frame> D  P  L  R  Q  T  L  H  *  L  V  V  V  I  *  L  K  T  F  K  H  N  G  *  I  S  Q  L  K  W  N  *  I  L  V  S  F  R  W  F  I  F  V  S  F  R  R  S  K  G  S  S  I  Q  I  R  L  L  L  S  E  W  N  L  G  Q  N  M  V  N  C  K  E  G  I  R  W  S  Q  I  I  K  I  S  * :   F  T  L  A  M  L  W  S  L  P  L  T  V  L  L  C  S  L  L  T  V  Q  H  H  L  I  C  K  S  C  H  L  C  S  L  L  L  R  F  T  R  I  Y  Q  D  N  L  S  N  C  A  K  K  *  I  V  *  Y  T  L  A  L  C  Q  *  Q  I  H  P  R  M  S  N  G  W  P  D  L  V  K  P  I  T  *  W  H  D  M </first_frame>
            <second_frame>  I  L  *  D  K  H  S  T  N  *  W  *  S  F  S  *  R  P  S  S  T  M  D  E  S  H  S  *  S  G  I  K  S  W  *  A  F  G  G  L  Y  L  *  V  S  G  D  Q  R  E  V  L  S  R  *  G  C  C  S  R  S  G  T  W  A  K  I  W  S  I  A  K  R  E  F  G  G  V  R  S  S  K  Y  H   : S  S  P  L  R  C  Y  G  A  F  H  S  R  S  Y  C  A  P  C  *  L  S  N  T  I  S  S  A  R  V  V  I  F  A  V  S  Y  S  V  L  L  E  Y  I  R  T  T  C  R  T  V  Q  K  S  K  L  F  D  T  P  *  P  C  V  S  N  K  Y  T  R  V  *  A  M  D  G  Q  I  W  *  S  P  S  H  N  G  T  T   </second_frame>
            <third_frame>   S  S  E  T  N  T  P  L  I  S  G  S  H  L  A  E  D  L  Q  A  Q  W  M  N  L  T  A  E  V  E  L  N  P  G  E  L  S  V  V  Y  I  C  E  F  P  E  I  K  G  K  F  Y  P  D  K  A  A  A  L  G  V  E  P  G  P  K  Y  G  Q  L  Q  R  G  N  S  V  E  S  D  H  Q  N  I  I  :  V  H  P  C  D  V  M  E  P  S  T  H  G  P  I  V  L  L  V  D  C  P  T  P  S  H  L  Q  E  L  S  S  L  Q  S  L  T  P  F  Y  S  N  I  S  G  Q  P  V  E  L  C  K  K  V  N  C  L  I  H  L  S  P  V  S  V  T  N  T  P  A  Y  E  Q  W  M  A  R  F  G  E  A  H  H  I  M  A  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40190" stop="39939"/>
                    <exon start="39842" stop="39579"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSETNTPLISGSHLAEDLQAQWMNLTAEVELNPGELSVVYICEFPEIKGKFYPDKAAALGVEPGPKYGQLQRGNSVESDHQNIIVHPCDVMEPSTHGPIVLLVDCPTPSHLQELSSLQSLTPFYSNISGQPVELCKKVNCLIHLSPVSVTNTPAYEQWMARFGEAHHIMARH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="43762" PGL_stop="40261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43762" e_stop="43189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43762" e_stop="43189" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43762" stop="43189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339455" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGAAACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAGAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAACTGGTAATAACAAGTCATATATACAGGTAAGTTCAAAATGTGGTGATTTCTGTCAATTTAAGCAGGAAACTGAACTGGGTGTTACTCAACATAGAAAGAATAACAATGTAAATGGTATTGTAGTTTTGGAGATAGTTAAATTCAAAGAATAAAGTTTTCTGCTTTGTACTGATAAAAGGAAAATTTCTGAAGAAGTGTTGTTTATTTTGGTAGTTTGACATTTTTAATGTGTATTGTATGTACACTATATATGTGTGAAAAGATTTAGCAATTGATTAGAGCATAAAGTTCTGTCTTTTCTGTTAGTTTTGAATAATAACGTTTTGAATATTTTGCACCTAAGAGTGTGGCCTAGTGTGGCCCAGTGGTCCATTAATTGGTTGAGGTTCAAATCCCAGCATAGACAAAAAAAAAA</gDNA_template>
            <first_frame> P  K  L  R  I  R  R  W  K  R  E  R  G  N  R  C  V  N  F  *  V  E  W  G  R  R  G  K  E  G  L  R  V  I  I  V  M  T  S  R  R  K  T  L  Y  R  K  K  T  S  S  K  K  L  V  I  T  S  H  I  Y  R  *  V  Q  N  V  V  I  S  V  N  L  S  R  K  L  N  W  V  L  L  N  I  E  R  I  T  M  *  M  V  L  *  F  W  R  *  L  N  S  K  N  K  V  F  C  F  V  L  I  K  G  K  F  L  K  K  C  C  L  F  W  *  F  D  I  F  N  V  Y  C  M  Y  T  I  Y  V  *  K  D  L  A  I  D  *  S  I  K  F  C  L  F  C  *  F  *  I  I  T  F  *  I  F  C  T  *  E  C  G  L  V  W  P  S  G  P  L  I  G  *  G  S  N  P  S  I  D  K  K  K  </first_frame>
            <second_frame>  R  N  *  E  F  A  G  G  R  E  K  E  G  I  V  V  *  I  F  E  W  N  G  E  E  E  E  K  K  G  *  G  *  S  *  *  *  Q  A  E  E  K  P  S  T  G  R  R  R  A  Q  K  N  W  *  *  Q  V  I  Y  T  G  K  F  K  M  W  *  F  L  S  I  *  A  G  N  *  T  G  C  Y  S  T  *  K  E  *  Q  C  K  W  Y  C  S  F  G  D  S  *  I  Q  R  I  K  F  S  A  L  Y  *  *  K  E  N  F  *  R  S  V  V  Y  F  G  S  L  T  F  L  M  C  I  V  C  T  L  Y  M  C  E  K  I  *  Q  L  I  R  A  *  S  S  V  F  S  V  S  F  E  *  *  R  F  E  Y  F  A  P  K  S  V  A  *  C  G  P  V  V  H  *  L  V  E  V  Q  I  P  A  *  T  K  K  K </second_frame>
            <third_frame>   E  T  K  N  S  P  V  E  E  R  K  R  E  S  L  C  K  F  L  S  G  M  G  K  K  R  K  R  R  A  E  G  N  H  S  N  D  K  P  K  K  N  P  L  P  E  E  D  E  L  K  K  T  G  N  N  K  S  Y  I  Q  V  S  S  K  C  G  D  F  C  Q  F  K  Q  E  T  E  L  G  V  T  Q  H  R  K  N  N  N  V  N  G  I  V  V  L  E  I  V  K  F  K  E  *  S  F  L  L  C  T  D  K  R  K  I  S  E  E  V  L  F  I  L  V  V  *  H  F  *  C  V  L  Y  V  H  Y  I  C  V  K  R  F  S  N  *  L  E  H  K  V  L  S  F  L  L  V  L  N  N  N  V  L  N  I  L  H  L  R  V  W  P  S  V  A  Q  W  S  I  N  W  L  R  F  K  S  Q  H  R  Q  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43760" stop="43452"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETKNSPVEERKRESLCKFLSGMGKKRKRRAEGNHSNDKPKKNPLPEEDELKKTGNNKSYIQVSSKCGDFCQFKQETELGVTQHRKNNNVNGIVVLEIVKFKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43757" e_stop="43578"/>
            <exon e_start="42759" e_stop="42670"/>
            <exon e_start="41040" e_stop="40996"/>
            <exon e_start="40895" e_stop="40667"/>
            <exon e_start="40430" e_stop="40261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.920" e_score="0.933"/>
          <exon-intron don_prob="0.873" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="0.991"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="43757" e_stop="43578" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.920">
            <gDNA_intron_boundary i_start="43577" i_stop="42760" i_length="818"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42759" e_stop="42670" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.873" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42669" i_stop="41041" i_length="1629"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41040" e_stop="40996" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.825">
            <gDNA_intron_boundary i_start="40995" i_stop="40896" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="40895" e_stop="40667" e_length="229"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="40666" i_stop="40431" i_length="236"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="40430" e_stop="40261" e_length="170"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43757" stop="43578"/>
              <exon start="42759" stop="42670"/>
              <exon start="41040" stop="40996"/>
              <exon start="40895" stop="40667"/>
              <exon start="40430" stop="40261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAGAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAACTGGTAATAACAAGTCATATATACAG : ATCCTAGGAAATGGCATGGATACTCAAGATACATCACCCTCTGTCCTCCTCTTTTCGGACAAATGGAGGTTTTTATTTAACGCGGGAGAA : GGATTGCAACGCTTCTTGACAGAGCATAAAATTACATTGTCACAG : ATTGATCACATATTTCTATCACGTGTCTGCTCAGAAACTGTTGGTGGACTCCCAGGTTGGTTATCAATGAGCACAATATGAAAGTTAACTTAACTGTCTGGATCAAACTAACCCTTGAGAAGACTCTGGCGTATTGATTGCAGTTGATTAAAACCACCAAAGAAGTTCTATTGTTTTACTTGCAGGTCTCCTATTGACTTTGGCTGGGATGGGAAAAGAAGGGATGTCA : GTAAATGTATCGGGTCCTCCGGATCTTTATCTATTGGTTAAAGCAATGGAATCATTCATCCCAAATTCTGCCATGGGTCAAATAGATAGTGTTCTCTGTAATGGATCAGATGAAGTTGCTAGCGCTTCTTCAAGTAAGTTTGATCGTCTTTTTGCTCCCATTACTGATGG</gDNA_template>
            <first_frame> T  K  N  S  P  V  E  E  R  K  R  E  S  L  C  K  F  L  S  G  M  G  K  K  R  K  R  R  A  E  G  N  H  S  N  D  K  P  K  K  N  P  L  P  E  E  D  E  L  K  K  T  G  N  N  K  S  Y  I  Q  :  I  L  G  N  G  M  D  T  Q  D  T  S  P  S  V  L  L  F  S  D  K  W  R  F  L  F  N  A  G  E  :  G  L  Q  R  F  L  T  E  H  K  I  T  L  S  Q  :  I  D  H  I  F  L  S  R  V  C  S  E  T  V  G  G  L  P  G  W  L  S  M  S  T  I  *  K  L  T  *  L  S  G  S  N  *  P  L  R  R  L  W  R  I  D  C  S  *  L  K  P  P  K  K  F  Y  C  F  T  C  R  S  P  I  D  F  G  W  D  G  K  R  R  D  V   : S  K  C  I  G  S  S  G  S  L  S  I  G  *  S  N  G  I  I  H  P  K  F  C  H  G  S  N  R  *  C  S  L  *  W  I  R  *  S  C  *  R  F  F  K  *  V  *  S  S  F  C  S  H  Y  *  W </first_frame>
            <second_frame>  L  R  I  R  R  W  K  R  E  R  G  N  R  C  V  N  F  *  V  E  W  G  R  R  G  K  E  G  L  R  V  I  I  V  M  T  S  R  R  K  T  L  Y  R  K  K  T  S  S  K  K  L  V  I  T  S  H  I  Y  R :   S  *  E  M  A  W  I  L  K  I  H  H  P  L  S  S  S  F  R  T  N  G  G  F  Y  L  T  R  E  K :   D  C  N  A  S  *  Q  S  I  K  L  H  C  H  R :   L  I  T  Y  F  Y  H  V  S  A  Q  K  L  L  V  D  S  Q  V  G  Y  Q  *  A  Q  Y  E  S  *  L  N  C  L  D  Q  T  N  P  *  E  D  S  G  V  L  I  A  V  D  *  N  H  Q  R  S  S  I  V  L  L  A  G  L  L  L  T  L  A  G  M  G  K  E  G  M  S  :  V  N  V  S  G  P  P  D  L  Y  L  L  V  K  A  M  E  S  F  I  P  N  S  A  M  G  Q  I  D  S  V  L  C  N  G  S  D  E  V  A  S  A  S  S  S  K  F  D  R  L  F  A  P  I  T  D   </second_frame>
            <third_frame>   *  E  F  A  G  G  R  E  K  E  G  I  V  V  *  I  F  E  W  N  G  E  E  E  E  K  K  G  *  G  *  S  *  *  *  Q  A  E  E  K  P  S  T  G  R  R  R  A  Q  K  N  W  *  *  Q  V  I  Y  T   : D  P  R  K  W  H  G  Y  S  R  Y  I  T  L  C  P  P  L  F  G  Q  M  E  V  F  I  *  R  G  R   : R  I  A  T  L  L  D  R  A  *  N  Y  I  V  T   : D  *  S  H  I  S  I  T  C  L  L  R  N  C  W  W  T  P  R  L  V  I  N  E  H  N  M  K  V  N  L  T  V  W  I  K  L  T  L  E  K  T  L  A  Y  *  L  Q  L  I  K  T  T  K  E  V  L  L  F  Y  L  Q  V  S  Y  *  L  W  L  G  W  E  K  K  G  C  Q :   *  M  Y  R  V  L  R  I  F  I  Y  W  L  K  Q  W  N  H  S  S  Q  I  L  P  W  V  K  *  I  V  F  S  V  M  D  Q  M  K  L  L  A  L  L  Q  V  S  L  I  V  F  L  L  P  L  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43757" stop="43578"/>
                    <exon start="42759" stop="42670"/>
                    <exon start="41040" stop="40996"/>
                    <exon start="40895" stop="40815"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKNSPVEERKRESLCKFLSGMGKKRKRRAEGNHSNDKPKKNPLPEEDELKKTGNNKSYIQILGNGMDTQDTSPSVLLFSDKWRFLFNAGEGLQRFLTEHKITLSQIDHIFLSRVCSETVGGLPGWLSMSTI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40744" stop="40667"/>
                    <exon start="40430" stop="40263"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHQRSSIVLLAGLLLTLAGMGKEGMSVNVSGPPDLYLLVKAMESFIPNSAMGQIDSVLCNGSDEVASASSSKFDRLFAPITD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="48853" PGL_stop="50868"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48853" e_stop="48993"/>
            <exon e_start="49103" e_stop="49241"/>
            <exon e_start="50221" e_stop="50369"/>
            <exon e_start="50473" e_stop="50726"/>
            <exon e_start="50820" e_stop="50868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.996"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48853" e_stop="48993" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.868">
            <gDNA_intron_boundary i_start="48994" i_stop="49102" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49103" e_stop="49241" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49242" i_stop="50220" i_length="979"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50221" e_stop="50369" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50370" i_stop="50472" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="50473" e_stop="50726" e_length="254"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50727" i_stop="50819" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="0.959">
            <gDNA_exon_boundary e_start="50820" e_stop="50868" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48853" stop="48993"/>
              <exon start="49103" stop="49241"/>
              <exon start="50221" stop="50369"/>
              <exon start="50473" stop="50726"/>
              <exon start="50820" stop="50868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330533" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAGCCCAACATGACCGACCCGTCCCACACTCTTTCTCCAAAACGGCGCGGCATCTCTTCCCTCTCGCGAATTCAAAGTTTCAAACAGCAAAGAAGCTTCAATGCAGACACAGGACTAATATATAGCAGCAAAATTGAAG : GTTAAATTGGACTCAATTCACGCTCCAAGTCGATGAACTCTTGAATGTAATGATCTTCCTCCCTGCCGCTGCTGCTGCTGCCTAATGGACGACGTTGATCGCTTATTTGAATGCTTCAAATGCGGCATTTCTCCCCCTC : AATCAGCAATAAGAGAAAGGAAAAAGGGAAAGCAGACTGTGAAGCAAAGTGATACATTGGAAAAGCTATCAACATCTTCAGATATTTTTTCATCAAGATCAAAGGGAAAGGTCCAAAATGCAACAGATGTTGAGCTCTGCCTACAAAAT : TTTCTTGAATTGTATTGACAAGTACTATTTTTCAAGCACATCCCATGCCGGTGGAAACTACTAACTGAAATTCAAAGATTCTTCTTGTAGACCAGTTCATCAACAACAAAGATACAAAGTCTTAAGAAAGCATCACAGCTCTCTCCCCTAGTGTTTTATGGTTCTCCACATGGAGTTCCTCCAAAAAGACCAGCTCGTTTGTTGCGGCTGTTGAATGAAATCCGTGTAGACTTTAACGAGCAACATAAATTAAG : CCAAGATATATGGGCCACATTTCCAAGGCAAGATGAAGCGATGAAGTAT</gDNA_template>
            <first_frame> S  S  P  T  *  P  T  R  P  T  L  F  L  Q  N  G  A  A  S  L  P  S  R  E  F  K  V  S  N  S  K  E  A  S  M  Q  T  Q  D  *  Y  I  A  A  K  L  K  :  V  K  L  D  S  I  H  A  P  S  R  *  T  L  E  C  N  D  L  P  P  C  R  C  C  C  C  L  M  D  D  V  D  R  L  F  E  C  F  K  C  G  I  S  P  P   : Q  S  A  I  R  E  R  K  K  G  K  Q  T  V  K  Q  S  D  T  L  E  K  L  S  T  S  S  D  I  F  S  S  R  S  K  G  K  V  Q  N  A  T  D  V  E  L  C  L  Q  N  :  F  L  E  L  Y  *  Q  V  L  F  F  K  H  I  P  C  R  W  K  L  L  T  E  I  Q  R  F  F  L  *  T  S  S  S  T  T  K  I  Q  S  L  K  K  A  S  Q  L  S  P  L  V  F  Y  G  S  P  H  G  V  P  P  K  R  P  A  R  L  L  R  L  L  N  E  I  R  V  D  F  N  E  Q  H  K  L  S :   Q  D  I  W  A  T  F  P  R  Q  D  E  A  M  K  Y </first_frame>
            <second_frame>  R  A  Q  H  D  R  P  V  P  H  S  F  S  K  T  A  R  H  L  F  P  L  A  N  S  K  F  Q  T  A  K  K  L  Q  C  R  H  R  T  N  I  *  Q  Q  N  *  R :   L  N  W  T  Q  F  T  L  Q  V  D  E  L  L  N  V  M  I  F  L  P  A  A  A  A  A  A  *  W  T  T  L  I  A  Y  L  N  A  S  N  A  A  F  L  P  L  :  N  Q  Q  *  E  K  G  K  R  E  S  R  L  *  S  K  V  I  H  W  K  S  Y  Q  H  L  Q  I  F  F  H  Q  D  Q  R  E  R  S  K  M  Q  Q  M  L  S  S  A  Y  K  I :   F  L  N  C  I  D  K  Y  Y  F  S  S  T  S  H  A  G  G  N  Y  *  L  K  F  K  D  S  S  C  R  P  V  H  Q  Q  Q  R  Y  K  V  L  R  K  H  H  S  S  L  P  *  C  F  M  V  L  H  M  E  F  L  Q  K  D  Q  L  V  C  C  G  C  *  M  K  S  V  *  T  L  T  S  N  I  N  *   : A  K  I  Y  G  P  H  F  Q  G  K  M  K  R  *  S   </second_frame>
            <third_frame>   E  P  N  M  T  D  P  S  H  T  L  S  P  K  R  R  G  I  S  S  L  S  R  I  Q  S  F  K  Q  Q  R  S  F  N  A  D  T  G  L  I  Y  S  S  K  I  E   : G  *  I  G  L  N  S  R  S  K  S  M  N  S  *  M  *  *  S  S  S  L  P  L  L  L  L  P  N  G  R  R  *  S  L  I  *  M  L  Q  M  R  H  F  S  P  S :   I  S  N  K  R  K  E  K  G  K  A  D  C  E  A  K  *  Y  I  G  K  A  I  N  I  F  R  Y  F  F  I  K  I  K  G  K  G  P  K  C  N  R  C  *  A  L  P  T  K   : F  S  *  I  V  L  T  S  T  I  F  Q  A  H  P  M  P  V  E  T  T  N  *  N  S  K  I  L  L  V  D  Q  F  I  N  N  K  D  T  K  S  *  E  S  I  T  A  L  S  P  S  V  L  W  F  S  T  W  S  S  S  K  K  T  S  S  F  V  A  A  V  E  *  N  P  C  R  L  *  R  A  T  *  I  K  :  P  R  Y  M  G  H  I  S  K  A  R  *  S  D  E  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49139" stop="49241"/>
                    <exon start="50221" stop="50369"/>
                    <exon start="50473" stop="50490"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLECNDLPPCRCCCCLMDDVDRLFECFKCGISPPQSAIRERKKGKQTVKQSDTLEKLSTSSDIFSSRSKGKVQNATDVELCLQNFLELY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50563" stop="50726"/>
                    <exon start="50820" stop="50868"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSSSTTKIQSLKKASQLSPLVFYGSPHGVPPKRPARLLRLLNEIRVDFNEQHKLSQDIWATFPRQDEAMKY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="63902" PGL_stop="62699"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63902" e_stop="63710"/>
            <exon e_start="63301" e_stop="63051"/>
            <exon e_start="62970" e_stop="62860"/>
            <exon e_start="62828" e_stop="62699"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="0.990"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="63902" e_stop="63710" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="63709" i_stop="63302" i_length="408"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63301" e_stop="63051" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63050" i_stop="62971" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62970" e_stop="62860" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62859" i_stop="62829" i_length="31"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="62828" e_stop="62699" e_length="130"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63902" stop="63710"/>
              <exon start="63301" stop="63051"/>
              <exon start="62970" stop="62860"/>
              <exon start="62828" stop="62699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63871" stop="63710"/>
              <exon start="63301" stop="63051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAGCAAGCATTTTCTTAGTGTTTATTTTACTATAAATTTTTTTTTTTGTTATAAATTTAAAAAATGCCTTGCATAGCTTTTGGACGATTCGATGATTCATTCAGCTTAGGGTCTATTAAGGCCTACATTGCTGAATTCATCTCTACTTTGCTCTTTGTCTTCGCCGGAGTTGGTTCAGCTATTGCTTACA : ACAAGGTGACAGCTGATGCTGCTCTTGATCCGTCTGGGCTAGTAGCTGTTGCAGTTTGCCATGGATTCGCACTGTTCGTGGCTGTTGCCATTGCTGCTAATATCTCCGGTGGTCACGTCAACCCTGCCGTCACATTCGGATTGGCTCTCGGTGGCCAAATCACCCTCCTCACCGGTCTATTTTACTGGATTGCTCAACTTTTGGGTGCAATTGTTGGCTGTTACCTTCTCAAAGTTGTGACTGGAGGAATG : GCGGTTCCGATCCACGGTGTGGCTGCTGGAGTAGGAGCTGCCGAAGGAGTGGTGATGGAAATAATCATTACATTTGCTTTGGTGTACACAGTGTACGCCACAGCAGCTGAC : CCATAGCGATCGGTTTCATTGTTGGTGCTAATATTTTAGCTGCAGGCCCGTTCTCTGGAGGTTCAATGAACCCAGCCCGTTCATTTGGACCCGCTGTGGTTAGTGGAAACTTTGCTGGTATTTGGATTTA</gDNA_template>
            <first_frame> S  K  Q  A  F  S  *  C  L  F  Y  Y  K  F  F  F  L  L  *  I  *  K  M  P  C  I  A  F  G  R  F  D  D  S  F  S  L  G  S  I  K  A  Y  I  A  E  F  I  S  T  L  L  F  V  F  A  G  V  G  S  A  I  A  Y   : N  K  V  T  A  D  A  A  L  D  P  S  G  L  V  A  V  A  V  C  H  G  F  A  L  F  V  A  V  A  I  A  A  N  I  S  G  G  H  V  N  P  A  V  T  F  G  L  A  L  G  G  Q  I  T  L  L  T  G  L  F  Y  W  I  A  Q  L  L  G  A  I  V  G  C  Y  L  L  K  V  V  T  G  G  M  :  A  V  P  I  H  G  V  A  A  G  V  G  A  A  E  G  V  V  M  E  I  I  I  T  F  A  L  V  Y  T  V  Y  A  T  A  A  D  :  P  *  R  S  V  S  L  L  V  L  I  F  *  L  Q  A  R  S  L  E  V  Q  *  T  Q  P  V  H  L  D  P  L  W  L  V  E  T  L  L  V  F  G  F  </first_frame>
            <second_frame>  A  S  K  H  F  L  S  V  Y  F  T  I  N  F  F  F  C  Y  K  F  K  K  C  L  A  *  L  L  D  D  S  M  I  H  S  A  *  G  L  L  R  P  T  L  L  N  S  S  L  L  C  S  L  S  S  P  E  L  V  Q  L  L  L  T  :  T  R  *  Q  L  M  L  L  L  I  R  L  G  *  *  L  L  Q  F  A  M  D  S  H  C  S  W  L  L  P  L  L  L  I  S  P  V  V  T  S  T  L  P  S  H  S  D  W  L  S  V  A  K  S  P  S  S  P  V  Y  F  T  G  L  L  N  F  W  V  Q  L  L  A  V  T  F  S  K  L  *  L  E  E  W :   R  F  R  S  T  V  W  L  L  E  *  E  L  P  K  E  W  *  W  K  *  S  L  H  L  L  W  C  T  Q  C  T  P  Q  Q  L  T :   H  S  D  R  F  H  C  W  C  *  Y  F  S  C  R  P  V  L  W  R  F  N  E  P  S  P  F  I  W  T  R  C  G  *  W  K  L  C  W  Y  L  D  L </second_frame>
            <third_frame>   Q  A  S  I  F  L  V  F  I  L  L  *  I  F  F  F  V  I  N  L  K  N  A  L  H  S  F  W  T  I  R  *  F  I  Q  L  R  V  Y  *  G  L  H  C  *  I  H  L  Y  F  A  L  C  L  R  R  S  W  F  S  Y  C  L  Q :   Q  G  D  S  *  C  C  S  *  S  V  W  A  S  S  C  C  S  L  P  W  I  R  T  V  R  G  C  C  H  C  C  *  Y  L  R  W  S  R  Q  P  C  R  H  I  R  I  G  S  R  W  P  N  H  P  P  H  R  S  I  L  L  D  C  S  T  F  G  C  N  C  W  L  L  P  S  Q  S  C  D  W  R  N   : G  G  S  D  P  R  C  G  C  W  S  R  S  C  R  R  S  G  D  G  N  N  H  Y  I  C  F  G  V  H  S  V  R  H  S  S  *   : P  I  A  I  G  F  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  V  V  S  G  N  F  A  G  I  W  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63839" stop="63710"/>
                    <exon start="63301" stop="63051"/>
                    <exon start="62970" stop="62860"/>
                    <exon start="62828" stop="62823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMPCIAFGRFDDSFSLGSIKAYIAEFISTLLFVFAGVGSAIAYNKVTADAALDPSGLVAVAVCHGFALFVAVAIAANISGGHVNPAVTFGLALGGQITLLTGLFYWIAQLLGAIVGCYLLKVVTGGMAVPIHGVAAGVGAAEGVVMEIIITFALVYTVYATAADP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="72638" PGL_stop="72814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72638" e_stop="72814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="72638" e_stop="72814" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72638" stop="72814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGTCATATCGATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  V  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  S  Y  R  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  D  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0266F15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="74119" PGL_stop="76829"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74119" e_stop="76829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="74119" e_stop="76829" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74119" stop="74831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74639" stop="75297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74708" stop="75465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75111" stop="75441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75318" stop="75876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75322" stop="76758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76397" stop="76829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTATCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTGGAAACCATATGCCCCAAGAAGGACACTGTATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCCTTCTCAAATGCTCTTCATGTTACTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAATAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGTAGTCTTTGGCACATCCGTTGCCCATATTTTCAATTGATGATAACCAGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATACGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAACACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAATTCTTGAAGTTGTGCCTTTAACTCTCTTAGCTCTGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACGGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATTTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAATCATCCATTTCCAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATTACAAACCAGAAGATTACCTGTGATGACAACATCTGATGTCTCCGCTTCCGACCGCCCAGGGAAAGCATAACAATGGGCCCTTTTGTTTGTTTGTCCGTTGCCCCTACCATGTTGTAATGTAGTGGATCCAGTTTGCCCATCACCCCGTCCGCTTTGATGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGTCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTAGACCCCCAACTACAGTCTGTAGTGAAGACTGAATAGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAAATCTCCTCCCTTTCGAAACCTCTTTGATGTCGATGTCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCTCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTTGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACTGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTATGTAGTAACTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAACACCCTTGAAGACTGGAGGTTTCAATTTCAAGAAATTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATATGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGAAGGTGTTGGTGCAGAAAACACTGGAGGTGTCTGACCTTGATCAGACAACCCCCTAAGATAAGCGAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCGATTCCTCATTTTGCACTTGTTCAGTTTCCCCTTCCTCACCCTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGTTGCTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  Y  L  N  L  R  R  I  N  H  H  P  I  L  G  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  P  S  Q  M  L  F  M  L  L  L  T  F  R  V  Y  Q  Y  I  I  N  K  Y  D  H  K  *  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  R  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  T  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  H  R  S  T  P  R  G  C  T  W  S  N  E  A  F  V  Q  *  F  L  K  L  C  L  *  L  S  *  L  C  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  Q  D  N  Q  I  Y  I  S  V  A  P  H  K  I  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  N  I  *  C  L  R  F  R  P  P  R  E  S  I  T  M  G  P  F  V  C  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  P  S  A  L  M  T  T  I  T  S  T  T  T  S  S  R  I  T  V  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  F  G  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  R  V  K  H  G  S  L  R  E  V  L  T  G  L  R  *  T  P  N  Y  S  L  *  *  R  L  N  R  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  I  S  S  L  S  K  P  L  *  C  R  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  C  R  S  L  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  I  P  *  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  L  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  M  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  N  T  L  E  D  W  R  F  Q  F  Q  E  I  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  D  I  H  M  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  P  K  I  S  E  N  L  I  D  H  L  *  G  R  L  G  W  R  F  L  I  L  H  L  F  S  F  P  F  L  T  L  S  Y  Y  F  F  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  S  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  I  S  I  L  E  G  S  T  I  T  P  S  L  E  T  I  C  P  K  K  D  T  V  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  L  L  K  C  S  S  C  Y  S  L  L  L  E  Y  I  S  I  S  S  I  N  T  I  T  N  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  V  V  F  G  T  S  V  A  H  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  I  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  S  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  R  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  F  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  K  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  L  Q  T  R  R  L  P  V  M  T  T  S  D  V  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  L  F  V  C  P  L  P  L  P  C  C  N  V  V  D  P  V  C  P  S  P  R  P  L  *  *  P  P  L  P  R  P  P  R  P  P  E  *  R  S  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  M  G  L  S  E  K  C  *  P  V  *  G  R  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  K  S  P  P  F  R  N  L  F  D  V  D  V  M  V  N  S  S  G  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  S  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  C  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  N  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  T  P  L  K  T  G  G  F  N  F  K  K  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  T  S  I  *  G  A  I  V  A  A  C  C  T  S  E  T  E  G  V  G  A  E  N  T  G  G  V  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  D  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  V  A  L  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  Q  P  S  P  H  P  W  K  P  Y  A  P  R  R  T  L  Y  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  T  P  Y  F  *  S  I  S  V  Y  H  Q  *  I  R  S  Q  I  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  *  S  L  A  H  P  L  P  I  F  S  I  D  D  N  Q  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  Y  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  T  P  E  H  P  K  G  M  H  L  V  *  *  S  L  C  S  I  I  L  E  V  V  P  L  T  L  L  A  L  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  G  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  K  L  H  Q  N  H  P  F  P  R  *  P  N  L  H  K  C  C  S  P  Q  N  S  P  N  K  T  Y  I  L  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  Y  K  P  E  D  Y  L  *  *  Q  H  L  M  S  P  L  P  T  A  Q  G  K  H  N  N  G  P  F  C  L  F  V  R  C  P  Y  H  V  V  M  *  W  I  Q  F  A  H  H  P  V  R  F  D  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  S  V  W  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  *  S  Q  A  W  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  *  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  N  L  L  P  F  E  T  S  L  M  S  M  S  W  *  I  H  L  A  S  L  L  P  P  L  P  R  N  L  P  L  L  G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  G  W  H  T  L  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  Y  V  V  T  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  N  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  K  V  L  V  Q  K  T  L  E  V  S  D  L  D  Q  T  T  P  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  F  A  L  V  Q  F  P  L  P  H  P  L  L  L  L  L  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75860" stop="76249"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLKSPPFRNLFDVDVMVNSSGFTPSTSTTKSTTSWKDFAVASTCKAEIRNSDLNPFTKRRIRSCGLKQSWVAYLDSARNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74846" stop="75091"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIRKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75550" stop="75783"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITPSALMTTITSTTTSSRITVSTMTTSTSSYWGSITLFGTIPPNMSSLPTSITLSRVKHGSLREVLTGLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75133" stop="75342"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHRFSITIQDRKLRRKPSHTQNYIKIIHFQDNQIYISVAPHKIHQTRPIYFFNYHRLTHRSRNTNRHIK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74422" stop="74622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQIWLKNPVHQAHESSRGIRKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITRSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76631" stop="76828"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISRVGWGGDSSFCTCSVSPSSPSLTTSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAVAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="76135" PGL_stop="74691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76135" e_stop="75949"/>
            <exon e_start="75204" e_stop="74691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.936"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="76135" e_stop="75949" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75948" i_stop="75205" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="75204" e_stop="74691" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76135" stop="75949"/>
              <exon start="75204" stop="74691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCAAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGAGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTC : GATGTAATTTTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAAATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCCGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCAGAGCTAAGAGAGTTAAAGGCACAACTTCAAGAATTATTGAACAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTGTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  K  V  C  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  R  G  Y  G  K  I  L  P  R  S  G  R  F   : R  C  N  F  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  K  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  P  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  R  A  K  R  V  K  G  T  T  S  R  I  I  E  Q  R  L  H  *  T  K  C  I  P  L  G  C  S  G  V  V  C  E  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  E  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  N  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  R  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  Q  G  M  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  K  W  *  I  S :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  Q  S  *  E  S  *  R  H  N  F  K  N  Y  *  T  K  A  S  L  D  Q  V  H  P  L  G  V  L  R  C  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76134" stop="75949"/>
                    <exon start="75204" stop="74692"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQVEATAKSFQEVVDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTNPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFRIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="76762" PGL_stop="76209"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76762" e_stop="76209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="76762" e_stop="76209" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76762" stop="76209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTGCAAAATGAGGAATCGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTCGCTTATCTTAGGGGGTTGTCTGATCAAGGTCAGACACCTCCAGTGTTTTCTGCACCAACACCTTCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCATATGGATGTCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAATTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGTTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGTTACTACATAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCAGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  T  S  A  K  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  G  V  V  *  S  R  S  D  T  S  S  V  F  C  T  N  T  F  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  F  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  V  T  T  *  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  E  S  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  R  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  T  P  S  V  S  E  V  Q  H  A  A  T  M  A  P  H  M  D  V  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  N  F  L  K  L  K  P  P  V  F  K  G  V  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  Q  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  N  K  C  K  M  R  N  R  H  P  N  L  P  *  R  *  S  I  R  F  S  L  I  L  G  G  C  L  I  K  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  I  W  M  S  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  I  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  I  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  S  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76761" stop="76210"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVVREGEEGETEQVQNEESPPQPTLEMINQVLAYLRGLSDQGQTPPVFSAPTPSVSEVQHAATMAPHMDVSLDIGTFPRLTTGPIMTNDQHELFSNFLKLKPPVFKGVESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWQSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="77596" PGL_stop="77908"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77596" e_stop="77908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="77596" e_stop="77908" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77596" stop="77908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCATCTCAAAATAGAAATCGATATATACCAAGTAATATCATAAAATCAACTATGACACTCAACATGTAGCAACATCAAGCACTATATCATTAACAATTACCGTTAAGTTCACACATGAGGACTCAAGGCTTAATACCATAGTCATTTGGGAATTAAGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTAC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  I  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  S  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  R  L  N  T  I  V  I  W  E  L  S  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  S  Q  N  R  N  R  Y  I  P  S  N  I  I  K  S  T  M  T  L  N  M  *  Q  H  Q  A  L  Y  H  *  Q  L  P  L  S  S  H  M  R  T  Q  G  L  I  P  *  S  F  G  N  *  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y </second_frame>
            <third_frame>   *  V  D  I  I  G  H  L  K  I  E  I  D  I  Y  Q  V  I  S  *  N  Q  L  *  H  S  T  C  S  N  I  K  H  Y  I  I  N  N  Y  R  *  V  H  T  *  G  L  K  A  *  Y  H  S  H  L  G  I  K  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0266F15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="80518" PGL_stop="82367"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80518" e_stop="80691"/>
            <exon e_start="81615" e_stop="81741"/>
            <exon e_start="82001" e_stop="82367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80518" e_stop="80691" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.972">
            <gDNA_intron_boundary i_start="80692" i_stop="81614" i_length="923"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81615" e_stop="81741" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81742" i_stop="82000" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82001" e_stop="82367" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80518" stop="80691"/>
              <exon start="81615" stop="81741"/>
              <exon start="82001" stop="82367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312346" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCCAATAACTACCTAAAAACTAATTTAGTTTGTGTGAGGTAAATTCAAGGATGGCATCTTTGGCAACTCTTGCTGCTGTGCAGCCCACAAGTGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTACATGTTAAATCATCTCGCCTTAATGTCAAGTCTACTAAATCCAG : GTCTGCTTCTGTGGTTGCAAAGTATGGTGACAAGAGTGTATATTTTGATTTAGAGGACTTGGGCAACACCACTGGTCAGTGGGACTTGTATGGCTCAGATGCACCCTCACCATACAACTCCCTTCAG : AGCAAGTTCTTCGAGACCTTTGCTGCTCCTTTCACCAAGAGAGGACTGTTGCTTAAATTCTTGATACTGGGAGGTGGCTCAACTCTTGCATACTTCAGTTCAACAGCATCAGGGGATATACTACCAATTAAGAAAGGGCCGCAACTTCCACCCAAGCTTGGTCCACGCGGAAAGATCTAATTTCTTTTCAATCAAGCTTTCTCAACCTTCATTTTGTAATTGATGTATCTGTCGTCAGCTTGTAAGTATTCTTGAAGCCTACAACATGAGACCTTTGTTACAAGAAGTTAAATCTTATGGCATTCGGTTTATCCTGTTGCAAAGTTTGAGCTTGTTTTCTAACATGGTGTCGATCTTATGACATTCA</gDNA_template>
            <first_frame> N  P  I  T  T  *  K  L  I  *  F  V  *  G  K  F  K  D  G  I  F  G  N  S  C  C  C  A  A  H  K  W  P  S  W  K  L  H  C  W  N  *  A  T  C  *  I  I  S  P  *  C  Q  V  Y  *  I  Q  :  V  C  F  C  G  C  K  V  W  *  Q  E  C  I  F  *  F  R  G  L  G  Q  H  H  W  S  V  G  L  V  W  L  R  C  T  L  T  I  Q  L  P  S   : E  Q  V  L  R  D  L  C  C  S  F  H  Q  E  R  T  V  A  *  I  L  D  T  G  R  W  L  N  S  C  I  L  Q  F  N  S  I  R  G  Y  T  T  N  *  E  R  A  A  T  S  T  Q  A  W  S  T  R  K  D  L  I  S  F  Q  S  S  F  L  N  L  H  F  V  I  D  V  S  V  V  S  L  *  V  F  L  K  P  T  T  *  D  L  C  Y  K  K  L  N  L  M  A  F  G  L  S  C  C  K  V  *  A  C  F  L  T  W  C  R  S  Y  D  I   </first_frame>
            <second_frame>  T  Q  *  L  P  K  N  *  F  S  L  C  E  V  N  S  R  M  A  S  L  A  T  L  A  A  V  Q  P  T  S  G  L  A  G  S  S  I  A  G  T  K  L  H  V  K  S  S  R  L  N  V  K  S  T  K  S  R :   S  A  S  V  V  A  K  Y  G  D  K  S  V  Y  F  D  L  E  D  L  G  N  T  T  G  Q  W  D  L  Y  G  S  D  A  P  S  P  Y  N  S  L  Q  :  S  K  F  F  E  T  F  A  A  P  F  T  K  R  G  L  L  L  K  F  L  I  L  G  G  G  S  T  L  A  Y  F  S  S  T  A  S  G  D  I  L  P  I  K  K  G  P  Q  L  P  P  K  L  G  P  R  G  K  I  *  F  L  F  N  Q  A  F  S  T  F  I  L  *  L  M  Y  L  S  S  A  C  K  Y  S  *  S  L  Q  H  E  T  F  V  T  R  S  *  I  L  W  H  S  V  Y  P  V  A  K  F  E  L  V  F  *  H  G  V  D  L  M  T  F  </second_frame>
            <third_frame>   P  N  N  Y  L  K  T  N  L  V  C  V  R  *  I  Q  G  W  H  L  W  Q  L  L  L  L  C  S  P  Q  V  A  *  L  E  A  P  L  L  E  L  S  Y  M  L  N  H  L  A  L  M  S  S  L  L  N  P   : G  L  L  L  W  L  Q  S  M  V  T  R  V  Y  I  L  I  *  R  T  W  A  T  P  L  V  S  G  T  C  M  A  Q  M  H  P  H  H  T  T  P  F  R :   A  S  S  S  R  P  L  L  L  L  S  P  R  E  D  C  C  L  N  S  *  Y  W  E  V  A  Q  L  L  H  T  S  V  Q  Q  H  Q  G  I  Y  Y  Q  L  R  K  G  R  N  F  H  P  S  L  V  H  A  E  R  S  N  F  F  S  I  K  L  S  Q  P  S  F  C  N  *  C  I  C  R  Q  L  V  S  I  L  E  A  Y  N  M  R  P  L  L  Q  E  V  K  S  Y  G  I  R  F  I  L  L  Q  S  L  S  L  F  S  N  M  V  S  I  L  *  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80543" stop="80691"/>
                    <exon start="81615" stop="81741"/>
                    <exon start="82001" stop="82180"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLCEVNSRMASLATLAAVQPTSGLAGSSIAGTKLHVKSSRLNVKSTKSRSASVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSSTASGDILPIKKGPQLPPKLGPRGKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="83264" PGL_stop="82907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83264" e_stop="82907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="83264" e_stop="82907" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83264" stop="82907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341539" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTATTTTAGAAAGCTATTCAAGAATAATAGAGAGCAGGGCGCACACAGTGATGTCACGGATTGAAGATGTTCTCCAAGTAGATGCTACGGCCCAAAATCCTTCCTGTGCTGATCTGAAGAGGTCTCCTTTAAGAGATTCACTACGGGTATCACCATCAGGCAGCTTCCCAAATGCTAGGGAAGAAGTAGAAAAGCTTAACGCTGCAGAGAATCCAACGTCAATGACATTGTTGGATTTCATGGGTTGGACAGTAGAACAAGGAGATAATGACACAAAGAAAGATGTGAAGGAGGATATAGACGTCGATGCAAAGAAACCACCTAGTATAGTTACAAACAAGAAACTTTCTTACTTAG</gDNA_template>
            <first_frame> A  I  L  E  S  Y  S  R  I  I  E  S  R  A  H  T  V  M  S  R  I  E  D  V  L  Q  V  D  A  T  A  Q  N  P  S  C  A  D  L  K  R  S  P  L  R  D  S  L  R  V  S  P  S  G  S  F  P  N  A  R  E  E  V  E  K  L  N  A  A  E  N  P  T  S  M  T  L  L  D  F  M  G  W  T  V  E  Q  G  D  N  D  T  K  K  D  V  K  E  D  I  D  V  D  A  K  K  P  P  S  I  V  T  N  K  K  L  S  Y  L  </first_frame>
            <second_frame>  L  F  *  K  A  I  Q  E  *  *  R  A  G  R  T  Q  *  C  H  G  L  K  M  F  S  K  *  M  L  R  P  K  I  L  P  V  L  I  *  R  G  L  L  *  E  I  H  Y  G  Y  H  H  Q  A  A  S  Q  M  L  G  K  K  *  K  S  L  T  L  Q  R  I  Q  R  Q  *  H  C  W  I  S  W  V  G  Q  *  N  K  E  I  M  T  Q  R  K  M  *  R  R  I  *  T  S  M  Q  R  N  H  L  V  *  L  Q  T  R  N  F  L  T  * </second_frame>
            <third_frame>   Y  F  R  K  L  F  K  N  N  R  E  Q  G  A  H  S  D  V  T  D  *  R  C  S  P  S  R  C  Y  G  P  K  S  F  L  C  *  S  E  E  V  S  F  K  R  F  T  T  G  I  T  I  R  Q  L  P  K  C  *  G  R  S  R  K  A  *  R  C  R  E  S  N  V  N  D  I  V  G  F  H  G  L  D  S  R  T  R  R  *  *  H  K  E  R  C  E  G  G  Y  R  R  R  C  K  E  T  T  *  Y  S  Y  K  Q  E  T  F  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83264" stop="82908"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AILESYSRIIESRAHTVMSRIEDVLQVDATAQNPSCADLKRSPLRDSLRVSPSGSFPNAREEVEKLNAAENPTSMTLLDFMGWTVEQGDNDTKKDVKEDIDVDAKKPPSIVTNKKLSYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="85494" PGL_stop="84907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85494" e_stop="85143"/>
            <exon e_start="85006" e_stop="84907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="0.966"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="85494" e_stop="85143" e_length="352"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="85142" i_stop="85007" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="85006" e_stop="84907" e_length="100"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85494" stop="85143"/>
              <exon start="85006" stop="84907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAATTTTCCTTCTTTTCACCTCCTCTTTATATCCGTTTCCTCAAGAACAATTATATCTATTGCATTGTCACTAGTGTAACATACCTATTTCAATTCAGCTTGAATCAAAAAGATGGTTCGAGCAGCGCTTGAGGAAGCGAAAGAAATGTGCAAGGCAAAGTTGTTGCATTTCAAAGGAAAATCTGAAGATGTTATTATTGAGACTAGTAATACTAGTGACTCTGGGGATGAATTGGCCACATCGAAAAGTGAAGATCAGCCTGTGTTTAGTCGCAGTGAGTCTGTTATGATGCGACCAAACGAGACCCCTGTTGTCTCTAGCCCACCCGCGAAACAGGGCCCACCTTCAG : ATATGGAGCTGATGAGGGAAAAATTTGCAAAGTTGTTGCTTGGCGAGGATATGTCTGGTGGAGGAAAGGGTGTGTCTTCTGCGTTGGCATTGTCAAACGC</gDNA_template>
            <first_frame> I  N  F  P  S  F  H  L  L  F  I  S  V  S  S  R  T  I  I  S  I  A  L  S  L  V  *  H  T  Y  F  N  S  A  *  I  K  K  M  V  R  A  A  L  E  E  A  K  E  M  C  K  A  K  L  L  H  F  K  G  K  S  E  D  V  I  I  E  T  S  N  T  S  D  S  G  D  E  L  A  T  S  K  S  E  D  Q  P  V  F  S  R  S  E  S  V  M  M  R  P  N  E  T  P  V  V  S  S  P  P  A  K  Q  G  P  P  S   : D  M  E  L  M  R  E  K  F  A  K  L  L  L  G  E  D  M  S  G  G  G  K  G  V  S  S  A  L  A  L  S  N   </first_frame>
            <second_frame>  L  I  F  L  L  F  T  S  S  L  Y  P  F  P  Q  E  Q  L  Y  L  L  H  C  H  *  C  N  I  P  I  S  I  Q  L  E  S  K  R  W  F  E  Q  R  L  R  K  R  K  K  C  A  R  Q  S  C  C  I  S  K  E  N  L  K  M  L  L  L  R  L  V  I  L  V  T  L  G  M  N  W  P  H  R  K  V  K  I  S  L  C  L  V  A  V  S  L  L  *  C  D  Q  T  R  P  L  L  S  L  A  H  P  R  N  R  A  H  L  Q  :  I  W  S  *  *  G  K  N  L  Q  S  C  C  L  A  R  I  C  L  V  E  E  R  V  C  L  L  R  W  H  C  Q  T  </second_frame>
            <third_frame>   *  F  S  F  F  S  P  P  L  Y  I  R  F  L  K  N  N  Y  I  Y  C  I  V  T  S  V  T  Y  L  F  Q  F  S  L  N  Q  K  D  G  S  S  S  A  *  G  S  E  R  N  V  Q  G  K  V  V  A  F  Q  R  K  I  *  R  C  Y  Y  *  D  *  *  Y  *  *  L  W  G  *  I  G  H  I  E  K  *  R  S  A  C  V  *  S  Q  *  V  C  Y  D  A  T  K  R  D  P  C  C  L  *  P  T  R  E  T  G  P  T  F  R :   Y  G  A  D  E  G  K  I  C  K  V  V  A  W  R  G  Y  V  W  W  R  K  G  C  V  F  C  V  G  I  V  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85389" stop="85143"/>
                    <exon start="85006" stop="84909"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKKMVRAALEEAKEMCKAKLLHFKGKSEDVIIETSNTSDSGDELATSKSEDQPVFSRSESVMMRPNETPVVSSPPAKQGPPSDMELMREKFAKLLLGEDMSGGGKGVSSALALSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="89309" PGL_stop="90379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89309" e_stop="89747"/>
            <exon e_start="89989" e_stop="90379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="0.993"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="89309" e_stop="89747" e_length="439"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="89748" i_stop="89988" i_length="241"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="89989" e_stop="90379" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89309" stop="89747"/>
              <exon start="89989" stop="90379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCATATAGAAGAAAAATGGAATCTATAGGAGTACTAATGGCGTGTCCAATGTCATCATACTTAGAACAACAACTCGATAATCGATTCAACCTCATACGTTACTGGAACTTCTCCGATAAGAAACAATTCATCAACGACTACGCTCATTCAATACGTGCTGTTGTGGGAAACGCTGCTGCTGGTGCTGATGCAGAGCTTATCGAGGCGTTGCCTCAGCTAGAAATTGTGGCTAGTTTCAGTGTTGGTTTAGATAAGATTGATTTGAACAAGTGTAAAGAGAAGGGTATTAGAGTGACTAATACACCAGATGTGTTAACTGAGGATGTTGCTGATCTTGCTATTGGATTAATATTGGCTGTGCTAAGGAGGATTTGCGAGTCTGATCGATATGTGAAGAAGGGATTGTGGAAGGCTGGTGATTTCGCGTTGACTTCTAAG : TTTAGTGGCAAAAGAGTTGGTATCATAGGATTAGGGAGGATTGGCTTAGCAATTGCAAAGAGAGCAGAGGCTTTTGATTGTCCAATCAGTTACTACGCGCGATCAGAAAAGACAAATACGAATTACAAATACTATCCAACTGTAGTAGAACTCGCTACCAATTGTGAGATCCTGGTTGTGGCGTGTGCACTAACTCCTGAGACTCGTTACGTTGTCAACCGCGAAGTGATTGATGCATTAGGTGCAAAAGGGATTCTTATCAACATTGGAAGGGGACCTCATGTTGATGAAAAAGAGATGGTATCTTCTCTTCTTGATGGTCGATTAGGGGGCGCTGGCCTTGATGTGTTTGAGAATGAACCTGAAGTCCCTGATAATCTGTTCGGCCTTG</gDNA_template>
            <first_frame> P  I  *  K  K  N  G  I  Y  R  S  T  N  G  V  S  N  V  I  I  L  R  T  T  T  R  *  S  I  Q  P  H  T  L  L  E  L  L  R  *  E  T  I  H  Q  R  L  R  S  F  N  T  C  C  C  G  K  R  C  C  W  C  *  C  R  A  Y  R  G  V  A  S  A  R  N  C  G  *  F  Q  C  W  F  R  *  D  *  F  E  Q  V  *  R  E  G  Y  *  S  D  *  Y  T  R  C  V  N  *  G  C  C  *  S  C  Y  W  I  N  I  G  C  A  K  E  D  L  R  V  *  S  I  C  E  E  G  I  V  E  G  W  *  F  R  V  D  F  *   : V  *  W  Q  K  S  W  Y  H  R  I  R  E  D  W  L  S  N  C  K  E  S  R  G  F  *  L  S  N  Q  L  L  R  A  I  R  K  D  K  Y  E  L  Q  I  L  S  N  C  S  R  T  R  Y  Q  L  *  D  P  G  C  G  V  C  T  N  S  *  D  S  L  R  C  Q  P  R  S  D  *  C  I  R  C  K  R  D  S  Y  Q  H  W  K  G  T  S  C  *  *  K  R  D  G  I  F  S  S  *  W  S  I  R  G  R  W  P  *  C  V  *  E  *  T  *  S  P  *  *  S  V  R  P   </first_frame>
            <second_frame>  P  Y  R  R  K  M  E  S  I  G  V  L  M  A  C  P  M  S  S  Y  L  E  Q  Q  L  D  N  R  F  N  L  I  R  Y  W  N  F  S  D  K  K  Q  F  I  N  D  Y  A  H  S  I  R  A  V  V  G  N  A  A  A  G  A  D  A  E  L  I  E  A  L  P  Q  L  E  I  V  A  S  F  S  V  G  L  D  K  I  D  L  N  K  C  K  E  K  G  I  R  V  T  N  T  P  D  V  L  T  E  D  V  A  D  L  A  I  G  L  I  L  A  V  L  R  R  I  C  E  S  D  R  Y  V  K  K  G  L  W  K  A  G  D  F  A  L  T  S  K  :  F  S  G  K  R  V  G  I  I  G  L  G  R  I  G  L  A  I  A  K  R  A  E  A  F  D  C  P  I  S  Y  Y  A  R  S  E  K  T  N  T  N  Y  K  Y  Y  P  T  V  V  E  L  A  T  N  C  E  I  L  V  V  A  C  A  L  T  P  E  T  R  Y  V  V  N  R  E  V  I  D  A  L  G  A  K  G  I  L  I  N  I  G  R  G  P  H  V  D  E  K  E  M  V  S  S  L  L  D  G  R  L  G  G  A  G  L  D  V  F  E  N  E  P  E  V  P  D  N  L  F  G  L  </second_frame>
            <third_frame>   H  I  E  E  K  W  N  L  *  E  Y  *  W  R  V  Q  C  H  H  T  *  N  N  N  S  I  I  D  S  T  S  Y  V  T  G  T  S  P  I  R  N  N  S  S  T  T  T  L  I  Q  Y  V  L  L  W  E  T  L  L  L  V  L  M  Q  S  L  S  R  R  C  L  S  *  K  L  W  L  V  S  V  L  V  *  I  R  L  I  *  T  S  V  K  R  R  V  L  E  *  L  I  H  Q  M  C  *  L  R  M  L  L  I  L  L  L  D  *  Y  W  L  C  *  G  G  F  A  S  L  I  D  M  *  R  R  D  C  G  R  L  V  I  S  R  *  L  L  S :   L  V  A  K  E  L  V  S  *  D  *  G  G  L  A  *  Q  L  Q  R  E  Q  R  L  L  I  V  Q  S  V  T  T  R  D  Q  K  R  Q  I  R  I  T  N  T  I  Q  L  *  *  N  S  L  P  I  V  R  S  W  L  W  R  V  H  *  L  L  R  L  V  T  L  S  T  A  K  *  L  M  H  *  V  Q  K  G  F  L  S  T  L  E  G  D  L  M  L  M  K  K  R  W  Y  L  L  F  L  M  V  D  *  G  A  L  A  L  M  C  L  R  M  N  L  K  S  L  I  I  C  S  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89310" stop="89747"/>
                    <exon start="89989" stop="90378"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYRRKMESIGVLMACPMSSYLEQQLDNRFNLIRYWNFSDKKQFINDYAHSIRAVVGNAAAGADAELIEALPQLEIVASFSVGLDKIDLNKCKEKGIRVTNTPDVLTEDVADLAIGLILAVLRRICESDRYVKKGLWKAGDFALTSKFSGKRVGIIGLGRIGLAIAKRAEAFDCPISYYARSEKTNTNYKYYPTVVELATNCEILVVACALTPETRYVVNREVIDALGAKGILINIGRGPHVDEKEMVSSLLDGRLGGAGLDVFENEPEVPDNLFGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="99316" PGL_stop="98153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99316" e_stop="99287"/>
            <exon e_start="98771" e_stop="98153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.737" acc_prob="0.000" e_score="0.433"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.433">
            <gDNA_exon_boundary e_start="99316" e_stop="99287" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.737" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99286" i_stop="98772" i_length="515"/>
          </intron>
          <exon e_serial="2" e_score="0.903">
            <gDNA_exon_boundary e_start="98771" e_stop="98153" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99316" stop="99287"/>
              <exon start="98771" stop="98153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACAGACCAGAAGAGTTTTAGCTTTGAA : ATTACACCAAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAACAGTCCTCTATTGCTCAACAAGCCTAAGTAGAAAAACAATCTACCCACTAAGCTATCCTAACTGGACAACTTAGACTTTATCACAACACACCAATTCCTTTATAGTTTTAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTTGGAATAATTCTGCCTTTGCTTTGTGTAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTACAACAAATGTTTAGGAAAATGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGCTGGAAAGGTCACACTTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTACAGCTGGCAGTCGACTGGCTCATCATCATGAGAGTCTGGTACCTCTACTAGGTCCCTGGGTTTGTTTCATCTGCAATACTTCAAACAAGACACCTGCAATACTCAAGTAGAAAACCCTGTACCTTTATGAGGTCCCTAAGTTTGTCAAATCATCAAAACTACAAATAACAATACCATAAA</gDNA_template>
            <first_frame> P  T  D  Q  K  S  F  S  F  E  :  I  T  P  K  R  K  K  E  L  S  I  L  P  L  S  N  S  P  L  L  L  N  K  P  K  *  K  N  N  L  P  T  K  L  S  *  L  D  N  L  D  F  I  T  T  H  Q  F  L  Y  S  F  R  S  G  L  Q  F  K  N  K  R  I  N  S  *  T  T  R  R  K  A  P  D  V  A  V  V  L  G  I  I  L  P  L  L  C  V  A  F  A  R  V  L  E  K  F  L  S  S  C  K  N  Y  N  K  C  L  G  K  C  L  L  Y  G  Q  V  T  F  L  N  F  F  A  I  G  W  K  G  H  T  F  L  T  P  S  G  S  V  H  L  L  S  V  P  S  T  A  G  S  R  L  A  H  H  H  E  S  L  V  P  L  L  G  P  W  V  C  F  I  C  N  T  S  N  K  T  P  A  I  L  K  *  K  T  L  Y  L  Y  E  V  P  K  F  V  K  S  S  K  L  Q  I  T  I  P  *  </first_frame>
            <second_frame>  P  Q  T  R  R  V  L  A  L  K :   L  H  Q  N  V  R  K  S  Y  Q  S  Y  R  *  A  T  V  L  Y  C  S  T  S  L  S  R  K  T  I  Y  P  L  S  Y  P  N  W  T  T  *  T  L  S  Q  H  T  N  S  F  I  V  L  G  V  V  Y  N  L  R  T  R  E  *  I  P  K  Q  L  D  E  K  L  Q  M  L  L  L  S  L  E  *  F  C  L  C  F  V  *  P  L  Q  E  F  L  K  S  F  Y  Q  V  A  K  T  T  T  N  V  *  E  N  A  F  Y  M  G  K  S  L  S  *  T  S  L  P  L  A  G  K  V  T  L  F  *  R  H  R  E  V  C  T  Y  F  L  Y  R  L  Q  L  A  V  D  W  L  I  I  M  R  V  W  Y  L  Y  *  V  P  G  F  V  S  S  A  I  L  Q  T  R  H  L  Q  Y  S  S  R  K  P  C  T  F  M  R  S  L  S  L  S  N  H  Q  N  Y  K  *  Q  Y  H  K </second_frame>
            <third_frame>   H  R  P  E  E  F  *  L  *   : N  Y  T  K  T  *  E  R  V  I  N  L  T  V  K  Q  Q  S  S  I  A  Q  Q  A  *  V  E  K  Q  S  T  H  *  A  I  L  T  G  Q  L  R  L  Y  H  N  T  P  I  P  L  *  F  *  E  W  F  T  I  *  E  Q  E  N  K  F  L  N  N  *  T  K  S  S  R  C  C  C  C  P  W  N  N  S  A  F  A  L  C  S  L  C  K  S  S  *  K  V  F  I  K  L  Q  K  L  Q  Q  M  F  R  K  M  P  F  I  W  A  S  H  F  P  K  L  L  C  H  W  L  E  R  S  H  F  S  D  A  I  G  K  C  A  P  T  F  C  T  V  Y  S  W  Q  S  T  G  S  S  S  *  E  S  G  T  S  T  R  S  L  G  L  F  H  L  Q  Y  F  K  Q  D  T  C  N  T  Q  V  E  N  P  V  P  L  *  G  P  *  V  C  Q  I  I  K  T  T  N  N  N  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0266F15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98573" stop="98223"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTRRKAPDVAVVLGIILPLLCVAFARVLEKFLSSCKNYNKCLGKCLLYGQVTFLNFFAIGWKGHTFLTPSGSVHLLSVPSTAGSRLAHHHESLVPLLGPWVCFICNTSNKTPAILK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="107114" PGL_stop="109309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107114" e_stop="107599"/>
            <exon e_start="109293" e_stop="109309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.918"/>
          <exon-only e_score="0.824"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="107114" e_stop="107599" e_length="486"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107600" i_stop="109292" i_length="1693"/>
          </intron>
          <exon e_serial="2" e_score="0.824">
            <gDNA_exon_boundary e_start="109293" e_stop="109309" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107114" stop="107599"/>
              <exon start="109293" stop="109309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339744" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGTAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAAGTGTGACCTTTCCAGCCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCATTTTCCTAAACATTTGTTGTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACACAAAGCAAAGGCAGAATTATTCCAAGGACAACAGCAACATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGATGTGTTGTGATAAAGTCTAAGTTGTCCAGTTAGGATAGCTTAGTGGGTAGATTGTTTTCTACTTAGGCTTGTTGAGCAATAGAGGACTGTTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTTGGTGTAATCGTGTTTCGCTTTTACTTTTGAAGATTAGTGAAAACGATTGAAA : AAACAAAAAAAATAAGA</gDNA_template>
            <first_frame> A  V  D  G  T  E  S  R  C  T  L  P  D  G  V  R  K  V  *  P  F  Q  P  M  A  K  K  F  R  K  V  T  C  P  Y  K  R  H  F  P  K  H  L  L  *  F  L  Q  L  D  K  N  F  S  R  T  L  A  K  A  T  Q  S  K  G  R  I  I  P  R  T  T  A  T  S  G  A  F  R  L  V  V  *  E  F  I  L  L  F  L  N  C  K  P  L  L  N  L  *  R  N  *  C  V  V  I  K  S  K  L  S  S  *  D  S  L  V  G  R  L  F  S  T  *  A  C  *  A  I  E  D  C  C  L  T  V  R  L  I  T  L  S  Y  V  L  V  *  S  C  F  A  F  T  F  E  D  *  *  K  R  L  K  :  K  Q  K  K  *   </first_frame>
            <second_frame>  L  *  T  V  Q  K  V  G  A  H  F  P  M  A  S  E  K  C  D  L  S  S  Q  W  Q  R  S  L  G  K  *  L  A  H  I  K  G  I  F  L  N  I  C  C  S  F  C  N  L  I  K  T  F  Q  E  L  L  Q  R  L  H  K  A  K  A  E  L  F  Q  G  Q  Q  Q  H  L  E  L  F  V  *  L  F  R  N  L  F  S  C  S  *  I  V  N  H  S  *  I  Y  K  G  I  D  V  L  *  *  S  L  S  C  P  V  R  I  A  *  W  V  D  C  F  L  L  R  L  V  E  Q  *  R  T  V  A  *  R  *  D  *  *  L  F  L  T  F  W  C  N  R  V  S  L  L  L  L  K  I  S  E  N  D  *  K :   N  K  K  N  K  </second_frame>
            <third_frame>   C  R  R  Y  R  K  *  V  H  T  S  R  W  R  Q  K  S  V  T  F  P  A  N  G  K  E  V  *  E  S  D  L  P  I  *  K  A  F  S  *  T  F  V  V  V  F  A  T  *  *  K  L  F  K  N  S  C  K  G  Y  T  K  Q  R  Q  N  Y  S  K  D  N  S  N  I  W  S  F  S  S  S  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  P  K  S  I  K  E  L  M  C  C  D  K  V  *  V  V  Q  L  G  *  L  S  G  *  I  V  F  Y  L  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  F  G  V  I  V  F  R  F  Y  F  *  R  L  V  K  T  I  E   : K  T  K  K  I  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0266F15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 116 chains have been computed
$ 
$ memory statistics:
$ 504312 bytes spliced alignments in total
$ 25 spliced alignments have been stored
$ 20172 bytes was the average size of a spliced alignment
$ 25552 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1503 bytes was the average size of a predicted gene location
$ 8 megabytes was the average size of the backtrace matrix
$ 141 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-08 17:04:26
-->
