<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-07 09:08:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546563" ref_strand="-" ref_description="SGN-E546563 [TUS-69-P22](-)">
      <seq>cgggcccccctcgagtttttttttttttttttttcaccaaacgtaagaaagagttatcaatcttaccgttaaacaatagtcctctattgctcaacaagcctaagtagaaaaacaatctacccactaagctatcccacttggacaacctagacttttacacaacacaccaattcctttatagatttagcagtggtttacaatttaacaacaagagaataaattcctaaacaactatacgacaagctcaagatgttgctgttgttcttggaatgattctaccttttgtgtagcctttgcaagtgttcttgaaaagtttttatcaagttgcaaaaactaaaaaacaaatgttttggaaagtgccttttatgtgggcaagtcactttcctaaactcctttgccatttgctgaaaaggtcacacttttctgacgccatcgggaagtgtgcacctactttctgtaccatctccagctggcagtcgactgactcattttcatgagagcctggtacctctactaggtccctggttttgtttcttctgcaatacctcaaacaagacacctgcaatacacaattagagaacctgatacctttatgaggtcccattgtttgtcaaatcatcaaaactacaaataacatttacagttaaagtaacatttgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0244C09.1" temp_strand="-" temp_description="C12HBa0244C09.1  AC216347.2 htgs_phase:2 submitted_to_sgn_as:C12HBa0244C09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="49352" stop="39442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49048" g_stop="48440" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="641" r_length="606" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48439" i_stop="48266" i_length="174">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.734" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48265" g_stop="48244" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="662" r_length="21" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="34" polyA_stop="15"/>
      <MATCH_line gen_id="C12HBa0244C09.1" gen_strand="-" ref_id="SGN-E546563" ref_strand="-">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0244C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546563" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49048" e_stop="48440"/>
          <exon e_start="48265" e_stop="48244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAGTCCTCTATTGCTCAACAAGCCTAAGTAGAAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTCTAACACAACACACCAATTCCTTTATAGATTCAAGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGAAAAGCTCTAGATGTTGCTGTTGTCCTTGGAATAATTCTGCCTTTGCTTTGTGTAGCCTTTGCAAGAGTTTTTGAAAAGTTTTTATCAAGTTGCAAAAACTAAACAA-AAATGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGCTGGAAGAGTCACAC-TTTCTGACGTCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTCCAGCTGGCAGTCGGCTGGCTCGTCATCATGAGAGCCTGGTACCTCTACTAGGTCCCTGGGTTTGTTTCATCTGCAATACTTCAAACAGGACACCTGCAATACTCAAGTAGAAAACCCGGTACCTTTATGAGGTCCCTAAGTTTGTCAAATCATCAAAACTACAAATAACATTTTCTCCCTTTTTGATGATGACAAACAATGATATGATCTGAGATCTTCACCAGAATTGTTCCCCCTGACAGTGTATCCCCCCTTACTGTATATTCCCCCTTATTTAGGTACTAACAGATTACTTCCCCCTTATTTAGCTACTAATAGTTTACTTCCCTCTTTTGGGATCATAAAAAAGATATGCAGTAAACCATTGAGTC</genome_strand>
        <mrna_strand>ACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAACAATAGTCCTCTATTGCTCAACAAGCCTAAGTAGAAAAACAATCTACCCACTAAGCTATCCCACTTGGACAACCTAGACTT-TTACACAACACACCAATTCCTTTATAGATTTAGCAGTGGTTTACAATTTAACAACAAGAGAATAAATTCCTAAACAACTATACGACAAGCTCAAGATGTTGCTGTTGTTCTTGGAATGATTCTACC--T--TTTGTGTAGCCTTTGCAAGTGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTAAAAAACAAATGTTTTGGAAAGTGCCTTTTATGTGGGCAAGTCACTTTCCTAAACTCCTTTGCCATTTGCTGAAAAGGTCACACTTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTACCATCTCCAGCTGGCAGTCGACTGACTCATTTTCATGAGAGCCTGGTACCTCTACTAGGTCCCTGGTTTTGTTTCTTCTGCAATACCTCAAACAAGACACCTGCAATACACAATTAGAGAACCTGATACCTTTATGAGGTCCCATTGTTTGTCAAATCATCAAAACTACAAATAACATTTAC..............................................................................................................................................................................AGTTAAAGT-AACATTTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203362" ref_strand="+" ref_description="SGN-E203362 [cLEB-3-P3](-)">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0244C09.1" temp_strand="+" temp_description="C12HBa0244C09.1  AC216347.2 htgs_phase:2 submitted_to_sgn_as:C12HBa0244C09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="39608" stop="49398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48611" g_stop="49097" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C12HBa0244C09.1" gen_strand="+" ref_id="SGN-E203362" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0244C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48611" e_stop="49097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGACGTCAGAAAGTGTGACTCTTCCAGCCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACATTTTTGTTTAGTTTTTGCAACTTGATAAAAACTTTTCAAAAACTCTTGCAAAGGCTACACAAAGCAAAGGCAGAATTATTCCAAGGACAACAGCAACATCTAGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCTTGAATCTATAAAGGAATTGGTGTGTTGTGTTAGAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTAGGCTTGTTGAGCAATAGAGGACTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTACTTTTGAAGATTAGTGAAAACGATTGAAA</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTCTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTG-TTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542229" ref_strand="+" ref_description="SGN-E542229 [TUS-63-G21]">
      <seq>taaacttcaatttagtcattcattttccatggaaaaagactacttcatcaatggaggaatccctaatccagcccttcagtttgaacctactatgtcattcccttcttggaatcccttacattcagggcaatctttgtttaaccccaactgggatcattcaacacctcaatttgactcaactttgaactcgattgtatcttcttctcctgctgagttgattggaaaactgggtactgtttgcagctaccctcaaccgattttgcacaataacagttatagtagacccatgatgggaaaagataatatacccaatttgggaagttcacttcctcctccattacctgctgatccaggttttgctcaaagagctgctaaattttcttgttttgggagtcgtagtttcaacggcagaacgagtccgttggggttgaactatacggaattatcacatagatctgctcaaacattggggaatggaaagttgcctagagtttcgagtagcccttctctcaagcaaggtggatcccctttgcaactcaagaattcgggtcaaacccggatggaaatgatgtccaataactcgaacgagtctgtttcagagccaagtggggaaacaggatcgaaacttccaactgaattgaattctagttctagaaaaagaaaaacagtttcaagagggaaagcaaaggaagattccccaactgaaggagctaatggaaacaggggaagtgaacctgatgataatgcaagagcaaagcgatgtaagcaagtagaaagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0244C09.1" temp_strand="+" temp_description="C12HBa0244C09.1  AC216347.2 htgs_phase:2 submitted_to_sgn_as:C12HBa0244C09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="49865" stop="51309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50165" g_stop="50888" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50889" i_stop="50953" i_length="65">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50954" g_stop="51009" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="780" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0244C09.1" gen_strand="+" ref_id="SGN-E542229" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0244C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50165" e_stop="50888"/>
          <exon e_start="50954" e_stop="51009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTCAATTTAATCATTCATTTTCCATGGAAAAAGACTACTTCATCAATGGAGGAATCCCTAATCCAGCCCTTCAGTTTGAACCTACTATGTCATTCCCTTCTTGGAATCCCTTACATTCAGGGCAATCTTTGTTTAACCCCAACTGGGATCATTCAACACCTCAATTTGACTCAACTTTGAACTCGATTGTATCTTCTTCTCCTGCTGAGTTGATTGGAAAACTGGGTACTGTTTGCAGCTCCCCTCAACCGATTTTGCACAATAACAGTTATAGTAGACCCATGATGGGAAAAGATAATATACCCAATTTGGGAAGTTCACTTCCTCCTCCATTACCTGCTGATCCAGGTTTTGCTCAAAGAGCTGCTAAATTTTCCTGTTTTGGGAGTCGTAGTTTCAACGGCAGAACGAGTCCGTTGGGGTTGAACTATACGGAATTATCACATAGATCTGCTCAAACATTGGGGAACGGAAAGTTGCCTAGAGTTTCGAGTAGCCCTTCTCTCAAGCAAGGTGGATCCCCTTTGCAACTCAAGAATTCGGGTCAAACCCGGATGGAAATGATGTCCAATAACTCTAACGAGTCTGTTTCAGAGCCAAGTGGGGAAACAGCATCGAAACTTCCAACTGAATTGAATTCTAGTTCTAGAAAAAGAAAAACAGTTTCAAGAGGGAAAACAAAGGAAGATTCCCCAACTGAAGGAGTTAATGGAAACAGGGTAAGGATTATTATCTCAGTCAAAAAGAGATTTAAGTAAATGCAATAATCAAAATTTCATTTCAGGGAAGTGAAGCTGATGATAATGCAAGAGCAAAGCGATGTAAGCAAGTAGAAAGTAA</genome_strand>
        <mrna_strand>TAAACTTCAATTTAGTCATTCATTTTCCATGGAAAAAGACTACTTCATCAATGGAGGAATCCCTAATCCAGCCCTTCAGTTTGAACCTACTATGTCATTCCCTTCTTGGAATCCCTTACATTCAGGGCAATCTTTGTTTAACCCCAACTGGGATCATTCAACACCTCAATTTGACTCAACTTTGAACTCGATTGTATCTTCTTCTCCTGCTGAGTTGATTGGAAAACTGGGTACTGTTTGCAGCTACCCTCAACCGATTTTGCACAATAACAGTTATAGTAGACCCATGATGGGAAAAGATAATATACCCAATTTGGGAAGTTCACTTCCTCCTCCATTACCTGCTGATCCAGGTTTTGCTCAAAGAGCTGCTAAATTTTCTTGTTTTGGGAGTCGTAGTTTCAACGGCAGAACGAGTCCGTTGGGGTTGAACTATACGGAATTATCACATAGATCTGCTCAAACATTGGGGAATGGAAAGTTGCCTAGAGTTTCGAGTAGCCCTTCTCTCAAGCAAGGTGGATCCCCTTTGCAACTCAAGAATTCGGGTCAAACCCGGATGGAAATGATGTCCAATAACTCGAACGAGTCTGTTTCAGAGCCAAGTGGGGAAACAGGATCGAAACTTCCAACTGAATTGAATTCTAGTTCTAGAAAAAGAAAAACAGTTTCAAGAGGGAAAGCAAAGGAAGATTCCCCAACTGAAGGAGCTAATGGAAACAGG.................................................................GGAAGTGAACCTGATGATAATGCAAGAGCAAAGCGATGTAAGCAAGTAGAAAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297432" ref_strand="+" ref_description="SGN-E297432 [cLEW-13-B24]">
      <seq>aaacttcaatttagtcattcattttccatggaaaaagactacttcatcaatggaggaatccctaatccagcccttcagtttgaacctactatgtcattcccttcttggaatcccttacattcagggcaatctttgtttaaccccaactgggatcattcaacacctcaatttgactcaactttgaactcgattgtatcttcttctcctgctgagttgattggaaaactgggtactgtttgcagctaccctcaaccgattttgcacaataacagttatagtagacccatgatgggaaaagataatatacccaatttgggaagttcacttcctcctccattacctgctgatccaggttttgctcaaagagctgctaaattttcttgttttgggagtcgtagtttcaacggcagaacgagtccgttggggttgaactatacggaattatcacatagatctgctcaaacattggggaatggaaagttgcctagagtttcgagtagcccttctctcaagcaaggtggatcccctttgcaactcaagaattcgggtcaaacccggatggaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0244C09.1" temp_strand="+" temp_description="C12HBa0244C09.1  AC216347.2 htgs_phase:2 submitted_to_sgn_as:C12HBa0244C09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="49866" stop="51035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50166" g_stop="50735" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0244C09.1" gen_strand="+" ref_id="SGN-E297432" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0244C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50166" e_stop="50735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAATTTAATCATTCATTTTCCATGGAAAAAGACTACTTCATCAATGGAGGAATCCCTAATCCAGCCCTTCAGTTTGAACCTACTATGTCATTCCCTTCTTGGAATCCCTTACATTCAGGGCAATCTTTGTTTAACCCCAACTGGGATCATTCAACACCTCAATTTGACTCAACTTTGAACTCGATTGTATCTTCTTCTCCTGCTGAGTTGATTGGAAAACTGGGTACTGTTTGCAGCTCCCCTCAACCGATTTTGCACAATAACAGTTATAGTAGACCCATGATGGGAAAAGATAATATACCCAATTTGGGAAGTTCACTTCCTCCTCCATTACCTGCTGATCCAGGTTTTGCTCAAAGAGCTGCTAAATTTTCCTGTTTTGGGAGTCGTAGTTTCAACGGCAGAACGAGTCCGTTGGGGTTGAACTATACGGAATTATCACATAGATCTGCTCAAACATTGGGGAACGGAAAGTTGCCTAGAGTTTCGAGTAGCCCTTCTCTCAAGCAAGGTGGATCCCCTTTGCAACTCAAGAATTCGGGTCAAACCCGGATGGAAATGATG</genome_strand>
        <mrna_strand>AAACTTCAATTTAGTCATTCATTTTCCATGGAAAAAGACTACTTCATCAATGGAGGAATCCCTAATCCAGCCCTTCAGTTTGAACCTACTATGTCATTCCCTTCTTGGAATCCCTTACATTCAGGGCAATCTTTGTTTAACCCCAACTGGGATCATTCAACACCTCAATTTGACTCAACTTTGAACTCGATTGTATCTTCTTCTCCTGCTGAGTTGATTGGAAAACTGGGTACTGTTTGCAGCTACCCTCAACCGATTTTGCACAATAACAGTTATAGTAGACCCATGATGGGAAAAGATAATATACCCAATTTGGGAAGTTCACTTCCTCCTCCATTACCTGCTGATCCAGGTTTTGCTCAAAGAGCTGCTAAATTTTCTTGTTTTGGGAGTCGTAGTTTCAACGGCAGAACGAGTCCGTTGGGGTTGAACTATACGGAATTATCACATAGATCTGCTCAAACATTGGGGAATGGAAAGTTGCCTAGAGTTTCGAGTAGCCCTTCTCTCAAGCAAGGTGGATCCCCTTTGCAACTCAAGAATTCGGGTCAAACCCGGATGGAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548679" ref_strand="+" ref_description="SGN-E548679 [TUS-63-G21](-)">
      <seq>cgacgggagaagattagtgaaagaatgaagcttttacaagatcttgtacctggctgtaacaaggtgacaggaaaagcactaatgcttgatgaaattataaactatgtacagtcactccaacgacaagtcgaggtaattcacagtttcctaatcgcgaattctatgaaacgtattgtgattcatcagctaattcttctgttttatagttcctatccatgaagttggcaacagtgaacccaaatttggatttccccctctccaaggatatatgtcaaccaaatggctctgtggcccatcctgttttcccaatagataaaacatcatcttcttaccaacaaggccggagcgatattcctaatggagcactaagtcaatgctcagtggacacatcagataactcactatgccgtagcctgggaatgcaattgcctccccttgatggatttgctgaatatcttaatcagttccctgaggatgacctgcaaagctttgtgcagatgggatttacccaaaaccccaacaaggatatgacactgcaatcacaagggcctcatcaaacgtctcacatgaaaattgagatgtagtcaccattcatttgtctaggaagaaagagacttctgtgtataggaagagattttttagtttaatctttcttcagaaattattataattactactaattgacaatattacctaaaatttaattgtacgaattttttgttttgctaagtgatgagtatttattgtgtaataacattattaagatccaagagtcatttgggtgcgaacagcacatgtaattttctttttctttgtaaataaatgagaaattaagatgttattataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0244C09.1" temp_strand="+" temp_description="C12HBa0244C09.1  AC216347.2 htgs_phase:2 submitted_to_sgn_as:C12HBa0244C09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="50944" stop="52755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51244" g_stop="51306" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51307" i_stop="51390" i_length="84">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51391" g_stop="51594" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="266" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51595" i_stop="51664" i_length="70">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51665" g_stop="51862" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="464" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51863" i_stop="51980" i_length="118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51981" g_stop="52062" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="546" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52063" i_stop="52157" i_length="95">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52158" g_stop="52451" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="843" r_length="297" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="844" polyA_stop="857"/>
      <MATCH_line gen_id="C12HBa0244C09.1" gen_strand="+" ref_id="SGN-E548679" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0244C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51244" e_stop="51306"/>
          <exon e_start="51391" e_stop="51594"/>
          <exon e_start="51665" e_stop="51862"/>
          <exon e_start="51981" e_stop="52062"/>
          <exon e_start="52158" e_stop="52451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGGGAGAAGATTAGTGAAAGAATGAAGCTTTTACAAGATCTTGTACCTGGCTGTAACAAGGTTAGCTGAAATGCATCAATAATTTATCCCTTTCTGGTAATACCAGTCCTGTTTCTAACCCGGCTTCATTAATTTGTGTACCAGGTGACAGGAAAAGCACTAATGCTTGATGAAATTATAAACTATGTACAGTCACTCCAACGACAAGTCGAGGTAATTCACAGTTTCCCTAATCGCGAATTCTATGAAATGTATTGTGATTCATCAGCTAACTCTTCTGTTTTATAGTTCCTATCCATGAAGTTGGCAACAGTGAACCCAAATTTGGATTTCCCCCTCTCCAAGGATGTAAGTATATCATGATTTATCATTCGTTCTTTTACATGACATTCTAAAACAATATCTTGTGTTCTTTCAGATATGTCAACCAAATGGCTCTGTGGCCCATCCTGTTTTCCCAATAGATAAAACATCATCTTCTTACCAACAAGGCCGGAGCGATATTCCTAATGGAGCACTAAGTCAATGCTCAGTGGACACATCAGATAACTCACTATGCCGTAGCCTGGGAATGCAATTGCCTCCCCTTGATGGATTTGCTGAATATCTTAATCAGGTAATAATAATAATTCAAGATTTAACTGATTTACAAAGACGCAAGATTTTACATTATCAGTGTATAAACCAAACATTTCTCATCATGTTATTTGATTTTAACAACTTCATTTCACCAGTTCCCTGAGGATGACCTGCAAAGCTTTGTGCAGATGGGATTTACCCAAAACCCCAACAAGGATATGACACTGCAATCACAAGGTAAGAAGAGGGATCGCGTCGAGTTTATTAAAATGCTCAATTATATAAATTGATAATGAATTGATGAGTGTTTTTATTAAAATCTTTTGATGCAGGGCCTCATCAAACGTCTCACATGAAAATTGAGATGTAGTCACCATTCATTTGTCTAGGAAGAAAGAGACTTCTGTGTATAGGAAGAGATTTTTTAGTTTTATCTTTCTTCAGAAATT-GT-T-ATTACTACTAATTGACAATATTACCTAAAATTTAATTGTACGAATTTTTTGTTTTGCTAAGTGATGAGTATTTATTGTGTAATAACATTATTAAGATCCAAGAGTCATTTGGGTGCGAACAGCACATGTAATTTTCTTTTTCTTTGTAAATAAATGAGATATTAAGATGTTATT</genome_strand>
        <mrna_strand>CGACGGGAGAAGATTAGTGAAAGAATGAAGCTTTTACAAGATCTTGTACCTGGCTGTAACAAG....................................................................................GTGACAGGAAAAGCACTAATGCTTGATGAAATTATAAACTATGTACAGTCACTCCAACGACAAGTCGAGGTAATTCACAGTTT-CCTAATCGCGAATTCTATGAAACGTATTGTGATTCATCAGCTAATTCTTCTGTTTTATAGTTCCTATCCATGAAGTTGGCAACAGTGAACCCAAATTTGGATTTCCCCCTCTCCAAGGAT......................................................................ATATGTCAACCAAATGGCTCTGTGGCCCATCCTGTTTTCCCAATAGATAAAACATCATCTTCTTACCAACAAGGCCGGAGCGATATTCCTAATGGAGCACTAAGTCAATGCTCAGTGGACACATCAGATAACTCACTATGCCGTAGCCTGGGAATGCAATTGCCTCCCCTTGATGGATTTGCTGAATATCTTAATCAG......................................................................................................................TTCCCTGAGGATGACCTGCAAAGCTTTGTGCAGATGGGATTTACCCAAAACCCCAACAAGGATATGACACTGCAATCACAAG...............................................................................................GGCCTCATCAAACGTCTCACATGAAAATTGAGATGTAGTCACCATTCATTTGTCTAGGAAGAAAGAGACTTCTGTGTATAGGAAGAGATTTTTTAGTTTAATCTTTCTTCAGAAATTATTATAATTACTACTAATTGACAATATTACCTAAAATTTAATTGTACGAATTTTTTGTTTTGCTAAGTGATGAGTATTTATTGTGTAATAACATTATTAAGATCCAAGAGTCATTTGGGTGCGAACAGCACATGTAATTTTCTTTTTCTTTGTAAATAAATGAGAAATTAAGATGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351423" ref_strand="+" ref_description="SGN-E351423 [cTOS-12-H5]">
      <seq>gaacccaaatttggatttccccctctccaaggatgtaagtatatcatgattcatcattcgttcttttacatgacattctcaaacaatatcttgtgttctttcagatatgtcaaccaaatggctctgtggcccatcctgttttcccaatagataaaacatcatcttcttaccaacaaggccggagcgatattcctaatggagcactaagtcaatgctcagtggacacatcagataactcactatgccgtagcctgggaatgcaattgcctccccttgatggatttgctgaatatcttaatcagttccctgaggatgacctgcaaagctttgtgcagatgggatttacccaaaaccccaacaaggatatgacactgcaatcacaagggcctcatcaaacgtctcacatgaaaattgagatgtagtcaccattcatttgtctaggaagaaagagacttctgtgtataggaagagatttttagtttaatctttcttcagaattattataattactactaaatgacaatattaccctaaattttattgtacgaatttttttgttttgctaagtgatgagtatttattgtgtaataacattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0244C09.1" temp_strand="+" temp_description="C12HBa0244C09.1  AC216347.2 htgs_phase:2 submitted_to_sgn_as:C12HBa0244C09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51261" stop="52668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51561" g_stop="51862" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51863" i_stop="51980" i_length="118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51981" g_stop="52062" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="384" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52063" i_stop="52157" i_length="95">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52158" g_stop="52368" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="597" r_length="213" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0244C09.1" gen_strand="+" ref_id="SGN-E351423" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0244C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51561" e_stop="51862"/>
          <exon e_start="51981" e_stop="52062"/>
          <exon e_start="52158" e_stop="52368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCCAAATTTGGATTTCCCCCTCTCCAAGGATGTAAGTATATCATGATTTATCATTCGTTCTTTTACATGACATTCTAAAACAATATCTTGTGTTCTTTCAGATATGTCAACCAAATGGCTCTGTGGCCCATCCTGTTTTCCCAATAGATAAAACATCATCTTCTTACCAACAAGGCCGGAGCGATATTCCTAATGGAGCACTAAGTCAATGCTCAGTGGACACATCAGATAACTCACTATGCCGTAGCCTGGGAATGCAATTGCCTCCCCTTGATGGATTTGCTGAATATCTTAATCAGGTAATAATAATAATTCAAGATTTAACTGATTTACAAAGACGCAAGATTTTACATTATCAGTGTATAAACCAAACATTTCTCATCATGTTATTTGATTTTAACAACTTCATTTCACCAGTTCCCTGAGGATGACCTGCAAAGCTTTGTGCAGATGGGATTTACCCAAAACCCCAACAAGGATATGACACTGCAATCACAAGGTAAGAAGAGGGATCGCGTCGAGTTTATTAAAATGCTCAATTATATAAATTGATAATGAATTGATGAGTGTTTTTATTAAAATCTTTTGATGCAGGGCCTCATCAAACGTCTCACATGAAAATTGAGATGTAGTCACCATTCATTTGTCTAGGAAGAAAGAGACTTCTGTGTATAGGAAGAGATTTTTTAGTTTTATCTTTCTTCAGAA--ATTGTTATTACTACTAATTGACAATATTACCTAAAATTTAATTGTACGAA-TTTTTTGTTTTGCTAAGTGATGAGTATTTATTGTGTAATAACATTAT</genome_strand>
        <mrna_strand>GAACCCAAATTTGGATTTCCCCCTCTCCAAGGATGTAAGTATATCATGATTCATCATTCGTTCTTTTACATGACATTCTCAAACAATATCTTGTGTTCTTTCAGATATGTCAACCAAATGGCTCTGTGGCCCATCCTGTTTTCCCAATAGATAAAACATCATCTTCTTACCAACAAGGCCGGAGCGATATTCCTAATGGAGCACTAAGTCAATGCTCAGTGGACACATCAGATAACTCACTATGCCGTAGCCTGGGAATGCAATTGCCTCCCCTTGATGGATTTGCTGAATATCTTAATCAG......................................................................................................................TTCCCTGAGGATGACCTGCAAAGCTTTGTGCAGATGGGATTTACCCAAAACCCCAACAAGGATATGACACTGCAATCACAAG...............................................................................................GGCCTCATCAAACGTCTCACATGAAAATTGAGATGTAGTCACCATTCATTTGTCTAGGAAGAAAGAGACTTCTGTGTATAGGAAGAGA-TTTTTAGTTTAATCTTTCTTCAGAATTATTATAATTACTACTAAATGACAATATTACCCTAAATTTTATTGTACGAATTTTTTTGTTTTGCTAAGTGATGAGTATTTATTGTGTAATAACATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243194" ref_strand="-" ref_description="SGN-E243194 [cLEE-2-G17]">
      <seq>ttcagagagattctttgtgttgagacataaattttgcaaaggagattatggagaggagaagcaagttgttgaagattaagtgaagaaggtggacaagtttatttgtcagaaattcaggccaagggggagacttgttgggttttatttgccctaaatttcttaccataaataggttttccttgtaggaaaaggttttggattgactaatccttttcttgtaggaaaaggttttggattgactaatccttttcttgtaggaaaaggtttaggactccataaatagaggcatttttcttctaacttaatcagcattcaaaatgtagtcttaagtgctttgagagttttggttagagggagaatttgtgggtcacaagcttgatacgttatcacttgtgtgaacctcccatgtattctgagtgaattggttgaggttgtttccctctgtattttgtactctcatatttatagtggattgctcatctcctttgtggacgtaggtcgattgaccgaaccacgttaaatctttatgtctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0244C09.1" temp_strand="-" temp_description="C12HBa0244C09.1  AC216347.2 htgs_phase:2 submitted_to_sgn_as:C12HBa0244C09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="83727" stop="81885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83427" g_stop="83206" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83205" i_stop="82499" i_length="707">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.823" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82498" g_stop="82185" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="535" r_length="314" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0244C09.1" gen_strand="-" ref_id="SGN-E243194" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0244C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243194" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83427" e_stop="83206"/>
          <exon e_start="82498" e_stop="82185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGAGAGGTTTTCTGTGTTGAGACATAAATTTTGCAAAGGAGATTATGTAGAGGAGAAGCAAGTTGTTGAAGATTAAGCGAAGAAGGTGGACAAATTTATTTTGTCAGAAATTCAAGCCAAGGGGGAGATTTGTTGGGTTTTATTT-TCCAAGATTTCTTACCATAAATAGGTTTTCCTTTTAGGAAAAGGTTTTGAATTGACTAATCCTTTTTTTGGTAGGAAAAGGTTTAGGACTCTATAAATAGAGGAATTTTCCTTCTAACTTAATCAGCATTCACAATGTAGTCTAAAGGGCTTTGAGAGTTTTGGTTAGGGGGAGAATTTATGGGTCACAAACTTGATACGTTATCGCTTGTGTGAACCTCCCATGTATTCCGAGTGAATTGGTTGAGGTTGTTTCCCTCTGTATTTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTAGGTCGATTGACCAAACCACGTTAAAATCAATGTGTCTTTTGGTATATTTCTCGTTGTCTTCTTACTCGTGATATTTCGAGGTTTGCATTGCTATCTTCCGCATTTACACCTGCTTATTTTTGGTCCTAACAAGTGGTATCCGAGCCAGATTCAATGACGAAGTCAAGTTTAGTGGTTCGATAATCGATGATTGAACTAGGTTAGAAAGAGGTGTTCATCATGGCTGGTGTAGTTCTAGCCGCAACCTTTTTTGATAGTAAAGAATATTTTGTTGGAGAAATTGTTTTAGAGAGGTTCTCTGTGTTGAGACATAAATTTTGCAAAGGAGATTTTGGAGAGGAGAAGCAAGTTGTTGAAGATTAAGTAAAGAAGGTGGACTAATTTATTTTGTCAGAAATTCAGGCAAGGGGAAGATTTGTTGGGTTTTATTTGCTCTGATTTCTTACCATAAATAGGTTTTCTTTGTAGGAAAAGGTTTTGGATTGACTAATCCTTTTTTGGTGGGAAAAGGTTTAGAACTCTATAAAAAGAGGAATGTTCCTTCTAACTTAATTAGCATTCACAATGTAGTCTTAAGGGCTTTGAGAGTTTTGGTTAGGGAGAGAATTTATGGGTCACAGGCTTGATACGTTATCACTTGTGTGAACCTCTCATGTATTCCGAGTGAATTGGTTGAGGTTGTTTCCCTCTGTATTTTGTACTCTCATATTTATAGTGGATTGCGCATCTCCTTTGTGGATGTAGGTCGATTGACCGAACCACGTTAAATCTTTGTGTCTTTT</genome_strand>
        <mrna_strand>TTCAGAGAGATTCTTTGTGTTGAGACATAAATTTTGCAAAGGAGATTATGGAGAGGAGAAGCAAGTTGTTGAAGATTAAGTGAAGAAGGTGGACAAGTTTA-TTTGTCAGAAATTCAGGCCAAGGGGGAGACTTGTTGGGTTTTATTTGCCCTAAATTTCTTACCATAAATAGGTTTTCCTTGTAGGAAAAGGTTTTGGATTGACTAATCCTTTTCTT-GTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTTTGGATTGACTAATCCTTTTCTTGTAGGAAAAGGTTTAGGACTCCATAAATAGAGGCATTTTTCTTCTAACTTAATCAGCATTCAAAATGTAGTCTTAAGTGCTTTGAGAGTTTTGGTTAGAGGGAGAATTTGTGGGTCACAAGCTTGATACGTTATCACTTGTGTGAACCTCCCATGTATTCTGAGTGAATTGGTTGAGGTTGTTTCCCTCTGTATTTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTTTATGTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213017" ref_strand="+" ref_description="SGN-E213017 [cLEC-72-O2]">
      <seq>acggggtatttgttctttaccgtgaccttgttgagggcccgatagtcgatgcacaaccgcagcgtcttgtccttcttcttctggaatagcacaggcgcaccaaacggcgccttggacggcctgatgtgtccaacatccagcaactccttgagctgcttccttaactcctccagttccgggggcgccttgcgataaggcgtcatggcaggcgtctttgcccctggaactagctcaatttgatggtcaacttccctccgtggtggtagccgttggggaagttctgttggcataacgtccttgttgctgctaaggacatgttcgatgcaaggtggcaatggaactgcctcagggcagctcccagtgtcttcaatcagagtggcaagaaatgttggatcgcctctcttgaagcccttgatgatctgcattgccgacaattgcattccagtttgtggtacccgaatcaggggtaccacgcaagaaccaccggtgtcactgatatgaagctggttgtgacgcggcgagatgaaggcattgacttcataccaaaagtcaagtcctaggatgacatcaaatacatccatcggggcaattgtaaaattagtttgcccggcccactctcctaactcaatcggaactctangcgcgaagccagtgacagtagtaggagtggcgttgacggtcttcaacttggtattactggcaacataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0244C09-sNRaU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0244C09.1" temp_strand="-" temp_description="C12HBa0244C09.1  AC216347.2 htgs_phase:2 submitted_to_sgn_as:C12HBa0244C09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="92953" stop="91644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92653" g_stop="91944" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0244C09.1" gen_strand="-" ref_id="SGN-E213017" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0244C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92653" e_stop="91944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGGGTACTTGTTCTTTTCCGTGACCTTGTTGAGGGCCCGGTAGTCAATGCACAATCGCAACGTCCTGTCCTTCTTCTTCTGGAATAACACAGGCGCACCAAACGGCGCCTTGGACGTCCTGATGTGTCCAGCATCCAGCAACTCCTTGAGCTGCTTCCTTAACTCTTCCAGTTCCGGGGGTGCCATGCGATAAGTCGTCATGGCAGGCGGCTTTGCCCCTGGAACCAGCTCAATTTGGTGGTCAACTTCCCTACGGGGTGGCAACCGTTGGGGAAGTTCTGTTGGCATAACGTCCTTGTTGCTGCTAAGGACATGTTTGATGCAAGGCGGCAATGGAACTGCCTCAGTGCAGCTCCCAGCGTCTTCAATCAAAGTGGAAAGAAATGTTGGCTCGCCTCTCTTGAAGCCCTTGATGATCTGCATTGCCGACAAATGCATTCCAATTTGTGGTACCCGAATAAGGGGTACCACGCAAGAACCACCGTTGTCACTGATATGAAGCTTGTTGTGACGTGGCGAGATGAAGGCATTGACTTCATACCAAAAGTCGAGTCCTAAGATGACATCAAATACATCCATCGGGGCAATTGTAAAATCAGTCTGCCCGGCCCACTCTCCTAACTCAATTGGAACTTTAGCCACAAAACCATTGACAGTAGTAGGAGTGGCGTTGACGGTCTTCAACTTGGTATTACTGGCAACATATCT</genome_strand>
        <mrna_strand>ACGGGGTATTTGTTCTTTACCGTGACCTTGTTGAGGGCCCGATAGTCGATGCACAACCGCAGCGTCTTGTCCTTCTTCTTCTGGAATAGCACAGGCGCACCAAACGGCGCCTTGGACGGCCTGATGTGTCCAACATCCAGCAACTCCTTGAGCTGCTTCCTTAACTCCTCCAGTTCCGGGGGCGCCTTGCGATAAGGCGTCATGGCAGGCGTCTTTGCCCCTGGAACTAGCTCAATTTGATGGTCAACTTCCCTCCGTGGTGGTAGCCGTTGGGGAAGTTCTGTTGGCATAACGTCCTTGTTGCTGCTAAGGACATGTTCGATGCAAGGTGGCAATGGAACTGCCTCAGGGCAGCTCCCAGTGTCTTCAATCAGAGTGGCAAGAAATGTTGGATCGCCTCTCTTGAAGCCCTTGATGATCTGCATTGCCGACAATTGCATTCCAGTTTGTGGTACCCGAATCAGGGGTACCACGCAAGAACCACCGGTGTCACTGATATGAAGCTGGTTGTGACGCGGCGAGATGAAGGCATTGACTTCATACCAAAAGTCAAGTCCTAGGATGACATCAAATACATCCATCGGGGCAATTGTAAAATTAGTTTGCCCGGCCCACTCTCCTAACTCAATCGGAACTCTANGCGCGAAGCCAGTGACAGTAGTAGGAGTGGCGTTGACGGTCTTCAACTTGGTATTACTGGCAACATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="49048" PGL_stop="48244"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49048" e_stop="48440"/>
            <exon e_start="48265" e_stop="48244"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.734" e_score="0.915"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="49048" e_stop="48440" e_length="609"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.734">
            <gDNA_intron_boundary i_start="48439" i_stop="48266" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="0.636">
            <gDNA_exon_boundary e_start="48265" e_stop="48244" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49048" stop="48440"/>
              <exon start="48265" stop="48244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546563" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAGTCCTCTATTGCTCAACAAGCCTAAGTAGAAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTCTAACACAACACACCAATTCCTTTATAGATTCAAGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGAAAAGCTCTAGATGTTGCTGTTGTCCTTGGAATAATTCTGCCTTTGCTTTGTGTAGCCTTTGCAAGAGTTTTTGAAAAGTTTTTATCAAGTTGCAAAAACTAAACAAAAATGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGCTGGAAGAGTCACACTTTCTGACGTCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTCCAGCTGGCAGTCGGCTGGCTCGTCATCATGAGAGCCTGGTACCTCTACTAGGTCCCTGGGTTTGTTTCATCTGCAATACTTCAAACAGGACACCTGCAATACTCAAGTAGAAAACCCGGTACCTTTATGAGGTCCCTAAGTTTGTCAAATCATCAAAACTACAAATAACATTTTC : ATATGCAGTAAACCATTGAGTC</gDNA_template>
            <first_frame> T  K  R  K  K  E  L  S  I  L  P  L  S  N  S  P  L  L  L  N  K  P  K  *  K  N  N  L  P  T  K  L  S  H  L  D  N  L  D  F  *  H  N  T  P  I  P  L  *  I  Q  E  W  F  T  I  *  E  Q  E  N  K  F  L  N  N  *  T  K  S  S  R  C  C  C  C  P  W  N  N  S  A  F  A  L  C  S  L  C  K  S  F  *  K  V  F  I  K  L  Q  K  L  N  K  N  V  *  E  S  A  F  Y  M  G  K  S  L  S  *  T  S  L  P  L  A  G  R  V  T  L  S  D  V  I  G  K  C  A  P  T  F  C  T  V  S  S  W  Q  S  A  G  S  S  S  *  E  P  G  T  S  T  R  S  L  G  L  F  H  L  Q  Y  F  K  Q  D  T  C  N  T  Q  V  E  N  P  V  P  L  *  G  P  *  V  C  Q  I  I  K  T  T  N  N  I  F  :  I  C  S  K  P  L  S  </first_frame>
            <second_frame>  P  N  V  R  K  S  Y  Q  S  Y  R  *  A  I  V  L  Y  C  S  T  S  L  S  R  K  T  I  Y  P  L  S  Y  P  T  W  T  T  *  T  S  N  T  T  H  Q  F  L  Y  R  F  K  S  G  L  Q  F  K  N  K  R  I  N  S  *  T  T  R  R  K  A  L  D  V  A  V  V  L  G  I  I  L  P  L  L  C  V  A  F  A  R  V  F  E  K  F  L  S  S  C  K  N  *  T  K  M  F  R  K  V  P  F  I  W  A  S  H  F  P  K  L  L  C  H  W  L  E  E  S  H  F  L  T  S  S  G  S  V  H  L  L  S  V  P  S  P  A  G  S  R  L  A  R  H  H  E  S  L  V  P  L  L  G  P  W  V  C  F  I  C  N  T  S  N  R  T  P  A  I  L  K  *  K  T  R  Y  L  Y  E  V  P  K  F  V  K  S  S  K  L  Q  I  T  F  S :   Y  A  V  N  H  *  V </second_frame>
            <third_frame>   Q  T  *  E  R  V  I  N  L  T  V  K  Q  *  S  S  I  A  Q  Q  A  *  V  E  K  Q  S  T  H  *  A  I  P  P  G  Q  P  R  L  L  T  Q  H  T  N  S  F  I  D  S  R  V  V  Y  N  L  R  T  R  E  *  I  P  K  Q  L  D  E  K  L  *  M  L  L  L  S  L  E  *  F  C  L  C  F  V  *  P  L  Q  E  F  L  K  S  F  Y  Q  V  A  K  T  K  Q  K  C  L  G  K  C  L  L  Y  G  Q  V  T  F  L  N  F  F  A  I  G  W  K  S  H  T  F  *  R  H  R  E  V  C  T  Y  F  L  Y  R  L  Q  L  A  V  G  W  L  V  I  M  R  A  W  Y  L  Y  *  V  P  G  F  V  S  S  A  I  L  Q  T  G  H  L  Q  Y  S  S  R  K  P  G  T  F  M  R  S  L  S  L  S  N  H  Q  N  Y  K  *  H  F   : H  M  Q  *  T  I  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0244C09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48741" stop="48505"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKMFRKVPFIWASHFPKLLCHWLEESHFLTSSGSVHLLSVPSPAGSRLARHHESLVPLLGPWVCFICNTSNRTPAILK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="48611" PGL_stop="49097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48611" e_stop="49097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="48611" e_stop="49097" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48611" stop="49097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGGAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGACGTCAGAAAGTGTGACTCTTCCAGCCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACATTTTTGTTTAGTTTTTGCAACTTGATAAAAACTTTTCAAAAACTCTTGCAAAGGCTACACAAAGCAAAGGCAGAATTATTCCAAGGACAACAGCAACATCTAGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCTTGAATCTATAAAGGAATTGGTGTGTTGTGTTAGAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTAGGCTTGTTGAGCAATAGAGGACTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTACTTTTGAAGATTAGTGAAAACGATTGAAA</gDNA_template>
            <first_frame> A  G  D  G  T  E  S  R  C  T  L  P  D  D  V  R  K  C  D  S  S  S  Q  W  Q  R  S  L  G  K  *  L  A  H  I  K  G  T  F  L  N  I  F  V  *  F  L  Q  L  D  K  N  F  S  K  T  L  A  K  A  T  Q  S  K  G  R  I  I  P  R  T  T  A  T  S  R  A  F  R  L  V  V  *  E  F  I  L  L  F  L  N  C  K  P  L  L  N  L  *  R  N  W  C  V  V  L  E  V  *  V  V  Q  V  G  *  L  S  G  *  I  V  F  L  L  R  L  V  E  Q  *  R  T  I  A  *  R  *  D  *  *  L  F  L  T  F  G  V  I  V  F  R  F  Y  F  *  R  L  V  K  T  I  E  </first_frame>
            <second_frame>  L  E  T  V  Q  K  V  G  A  H  F  P  M  T  S  E  S  V  T  L  P  A  N  G  K  E  V  *  E  S  D  L  P  I  *  K  A  L  S  *  T  F  L  F  S  F  C  N  L  I  K  T  F  Q  K  L  L  Q  R  L  H  K  A  K  A  E  L  F  Q  G  Q  Q  Q  H  L  E  L  F  V  *  L  F  R  N  L  F  S  C  S  *  I  V  N  H  S  *  I  Y  K  G  I  G  V  L  C  *  K  S  R  L  S  R  W  D  S  L  V  G  R  L  F  F  Y  L  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  L  V  *  S  C  F  A  F  T  F  E  D  *  *  K  R  L  K </second_frame>
            <third_frame>   W  R  R  Y  R  K  *  V  H  T  S  R  *  R  Q  K  V  *  L  F  Q  P  M  A  K  K  F  R  K  V  T  C  P  Y  K  R  H  F  P  K  H  F  C  L  V  F  A  T  *  *  K  L  F  K  N  S  C  K  G  Y  T  K  Q  R  Q  N  Y  S  K  D  N  S  N  I  *  S  F  S  S  S  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  L  E  S  I  K  E  L  V  C  C  V  R  S  L  G  C  P  G  G  I  A  *  W  V  D  C  F  S  T  *  A  C  *  A  I  E  D  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W  C  N  R  V  S  L  L  L  L  K  I  S  E  N  D  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0244C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="50165" PGL_stop="51009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50165" e_stop="50888"/>
            <exon e_start="50954" e_stop="51009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="0.989"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="50165" e_stop="50888" e_length="724"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50889" i_stop="50953" i_length="65"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="50954" e_stop="51009" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50165" stop="50888"/>
              <exon start="50954" stop="51009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50166" stop="50735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAACTTCAATTTAATCATTCATTTTCCATGGAAAAAGACTACTTCATCAATGGAGGAATCCCTAATCCAGCCCTTCAGTTTGAACCTACTATGTCATTCCCTTCTTGGAATCCCTTACATTCAGGGCAATCTTTGTTTAACCCCAACTGGGATCATTCAACACCTCAATTTGACTCAACTTTGAACTCGATTGTATCTTCTTCTCCTGCTGAGTTGATTGGAAAACTGGGTACTGTTTGCAGCTCCCCTCAACCGATTTTGCACAATAACAGTTATAGTAGACCCATGATGGGAAAAGATAATATACCCAATTTGGGAAGTTCACTTCCTCCTCCATTACCTGCTGATCCAGGTTTTGCTCAAAGAGCTGCTAAATTTTCCTGTTTTGGGAGTCGTAGTTTCAACGGCAGAACGAGTCCGTTGGGGTTGAACTATACGGAATTATCACATAGATCTGCTCAAACATTGGGGAACGGAAAGTTGCCTAGAGTTTCGAGTAGCCCTTCTCTCAAGCAAGGTGGATCCCCTTTGCAACTCAAGAATTCGGGTCAAACCCGGATGGAAATGATGTCCAATAACTCTAACGAGTCTGTTTCAGAGCCAAGTGGGGAAACAGCATCGAAACTTCCAACTGAATTGAATTCTAGTTCTAGAAAAAGAAAAACAGTTTCAAGAGGGAAAACAAAGGAAGATTCCCCAACTGAAGGAGTTAATGGAAACAGG : GGAAGTGAAGCTGATGATAATGCAAGAGCAAAGCGATGTAAGCAAGTAGAAAGTAA</gDNA_template>
            <first_frame> *  T  S  I  *  S  F  I  F  H  G  K  R  L  L  H  Q  W  R  N  P  *  S  S  P  S  V  *  T  Y  Y  V  I  P  F  L  E  S  L  T  F  R  A  I  F  V  *  P  Q  L  G  S  F  N  T  S  I  *  L  N  F  E  L  D  C  I  F  F  S  C  *  V  D  W  K  T  G  Y  C  L  Q  L  P  S  T  D  F  A  Q  *  Q  L  *  *  T  H  D  G  K  R  *  Y  T  Q  F  G  K  F  T  S  S  S  I  T  C  *  S  R  F  C  S  K  S  C  *  I  F  L  F  W  E  S  *  F  Q  R  Q  N  E  S  V  G  V  E  L  Y  G  I  I  T  *  I  C  S  N  I  G  E  R  K  V  A  *  S  F  E  *  P  F  S  Q  A  R  W  I  P  F  A  T  Q  E  F  G  S  N  P  D  G  N  D  V  Q  *  L  *  R  V  C  F  R  A  K  W  G  N  S  I  E  T  S  N  *  I  E  F  *  F  *  K  K  K  N  S  F  K  R  E  N  K  G  R  F  P  N  *  R  S  *  W  K  Q   : G  K  *  S  *  *  *  C  K  S  K  A  M  *  A  S  R  K  * </first_frame>
            <second_frame>  K  L  Q  F  N  H  S  F  S  M  E  K  D  Y  F  I  N  G  G  I  P  N  P  A  L  Q  F  E  P  T  M  S  F  P  S  W  N  P  L  H  S  G  Q  S  L  F  N  P  N  W  D  H  S  T  P  Q  F  D  S  T  L  N  S  I  V  S  S  S  P  A  E  L  I  G  K  L  G  T  V  C  S  S  P  Q  P  I  L  H  N  N  S  Y  S  R  P  M  M  G  K  D  N  I  P  N  L  G  S  S  L  P  P  P  L  P  A  D  P  G  F  A  Q  R  A  A  K  F  S  C  F  G  S  R  S  F  N  G  R  T  S  P  L  G  L  N  Y  T  E  L  S  H  R  S  A  Q  T  L  G  N  G  K  L  P  R  V  S  S  S  P  S  L  K  Q  G  G  S  P  L  Q  L  K  N  S  G  Q  T  R  M  E  M  M  S  N  N  S  N  E  S  V  S  E  P  S  G  E  T  A  S  K  L  P  T  E  L  N  S  S  S  R  K  R  K  T  V  S  R  G  K  T  K  E  D  S  P  T  E  G  V  N  G  N  R  :  G  S  E  A  D  D  N  A  R  A  K  R  C  K  Q  V  E  S   </second_frame>
            <third_frame>   N  F  N  L  I  I  H  F  P  W  K  K  T  T  S  S  M  E  E  S  L  I  Q  P  F  S  L  N  L  L  C  H  S  L  L  G  I  P  Y  I  Q  G  N  L  C  L  T  P  T  G  I  I  Q  H  L  N  L  T  Q  L  *  T  R  L  Y  L  L  L  L  L  S  *  L  E  N  W  V  L  F  A  A  P  L  N  R  F  C  T  I  T  V  I  V  D  P  *  W  E  K  I  I  Y  P  I  W  E  V  H  F  L  L  H  Y  L  L  I  Q  V  L  L  K  E  L  L  N  F  P  V  L  G  V  V  V  S  T  A  E  R  V  R  W  G  *  T  I  R  N  Y  H  I  D  L  L  K  H  W  G  T  E  S  C  L  E  F  R  V  A  L  L  S  S  K  V  D  P  L  C  N  S  R  I  R  V  K  P  G  W  K  *  C  P  I  T  L  T  S  L  F  Q  S  Q  V  G  K  Q  H  R  N  F  Q  L  N  *  I  L  V  L  E  K  E  K  Q  F  Q  E  G  K  Q  R  K  I  P  Q  L  K  E  L  M  E  T  G :   E  V  K  L  M  I  M  Q  E  Q  S  D  V  S  K  *  K  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0244C09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50166" stop="50888"/>
                    <exon start="50954" stop="51007"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLQFNHSFSMEKDYFINGGIPNPALQFEPTMSFPSWNPLHSGQSLFNPNWDHSTPQFDSTLNSIVSSSPAELIGKLGTVCSSPQPILHNNSYSRPMMGKDNIPNLGSSLPPPLPADPGFAQRAAKFSCFGSRSFNGRTSPLGLNYTELSHRSAQTLGNGKLPRVSSSPSLKQGGSPLQLKNSGQTRMEMMSNNSNESVSEPSGETASKLPTELNSSSRKRKTVSRGKTKEDSPTEGVNGNRGSEADDNARAKRCKQVES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="51244" PGL_stop="52451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51244" e_stop="51306"/>
            <exon e_start="51391" e_stop="51594"/>
            <exon e_start="51665" e_stop="51862"/>
            <exon e_start="51981" e_stop="52062"/>
            <exon e_start="52158" e_stop="52451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.985"/>
          <exon-intron don_prob="0.998" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51244" e_stop="51306" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.958">
            <gDNA_intron_boundary i_start="51307" i_stop="51390" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="51391" e_stop="51594" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="51595" i_stop="51664" i_length="70"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51665" e_stop="51862" e_length="198"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.944">
            <gDNA_intron_boundary i_start="51863" i_stop="51980" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51981" e_stop="52062" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52063" i_stop="52157" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="0.969">
            <gDNA_exon_boundary e_start="52158" e_stop="52451" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51244" stop="51306"/>
              <exon start="51391" stop="51594"/>
              <exon start="51665" stop="51862"/>
              <exon start="51981" stop="52062"/>
              <exon start="52158" stop="52451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGACGGGAGAAGATTAGTGAAAGAATGAAGCTTTTACAAGATCTTGTACCTGGCTGTAACAAG : GTGACAGGAAAAGCACTAATGCTTGATGAAATTATAAACTATGTACAGTCACTCCAACGACAAGTCGAGGTAATTCACAGTTTCCCTAATCGCGAATTCTATGAAATGTATTGTGATTCATCAGCTAACTCTTCTGTTTTATAGTTCCTATCCATGAAGTTGGCAACAGTGAACCCAAATTTGGATTTCCCCCTCTCCAAGGAT : ATATGTCAACCAAATGGCTCTGTGGCCCATCCTGTTTTCCCAATAGATAAAACATCATCTTCTTACCAACAAGGCCGGAGCGATATTCCTAATGGAGCACTAAGTCAATGCTCAGTGGACACATCAGATAACTCACTATGCCGTAGCCTGGGAATGCAATTGCCTCCCCTTGATGGATTTGCTGAATATCTTAATCAG : TTCCCTGAGGATGACCTGCAAAGCTTTGTGCAGATGGGATTTACCCAAAACCCCAACAAGGATATGACACTGCAATCACAAG : GGCCTCATCAAACGTCTCACATGAAAATTGAGATGTAGTCACCATTCATTTGTCTAGGAAGAAAGAGACTTCTGTGTATAGGAAGAGATTTTTTAGTTTTATCTTTCTTCAGAAATTGTTATTACTACTAATTGACAATATTACCTAAAATTTAATTGTACGAATTTTTTGTTTTGCTAAGTGATGAGTATTTATTGTGTAATAACATTATTAAGATCCAAGAGTCATTTGGGTGCGAACAGCACATGTAATTTTCTTTTTCTTTGTAAATAAATGAGATATTAAGATGTTATT</gDNA_template>
            <first_frame> R  R  E  K  I  S  E  R  M  K  L  L  Q  D  L  V  P  G  C  N  K  :  V  T  G  K  A  L  M  L  D  E  I  I  N  Y  V  Q  S  L  Q  R  Q  V  E  V  I  H  S  F  P  N  R  E  F  Y  E  M  Y  C  D  S  S  A  N  S  S  V  L  *  F  L  S  M  K  L  A  T  V  N  P  N  L  D  F  P  L  S  K  D  :  I  C  Q  P  N  G  S  V  A  H  P  V  F  P  I  D  K  T  S  S  S  Y  Q  Q  G  R  S  D  I  P  N  G  A  L  S  Q  C  S  V  D  T  S  D  N  S  L  C  R  S  L  G  M  Q  L  P  P  L  D  G  F  A  E  Y  L  N  Q  :  F  P  E  D  D  L  Q  S  F  V  Q  M  G  F  T  Q  N  P  N  K  D  M  T  L  Q  S  Q   : G  P  H  Q  T  S  H  M  K  I  E  M  *  S  P  F  I  C  L  G  R  K  R  L  L  C  I  G  R  D  F  L  V  L  S  F  F  R  N  C  Y  Y  Y  *  L  T  I  L  P  K  I  *  L  Y  E  F  F  V  L  L  S  D  E  Y  L  L  C  N  N  I  I  K  I  Q  E  S  F  G  C  E  Q  H  M  *  F  S  F  S  L  *  I  N  E  I  L  R  C  Y  </first_frame>
            <second_frame>  D  G  R  R  L  V  K  E  *  S  F  Y  K  I  L  Y  L  A  V  T  R :   *  Q  E  K  H  *  C  L  M  K  L  *  T  M  Y  S  H  S  N  D  K  S  R  *  F  T  V  S  L  I  A  N  S  M  K  C  I  V  I  H  Q  L  T  L  L  F  Y  S  S  Y  P  *  S  W  Q  Q  *  T  Q  I  W  I  S  P  S  P  R  I :   Y  V  N  Q  M  A  L  W  P  I  L  F  S  Q  *  I  K  H  H  L  L  T  N  K  A  G  A  I  F  L  M  E  H  *  V  N  A  Q  W  T  H  Q  I  T  H  Y  A  V  A  W  E  C  N  C  L  P  L  M  D  L  L  N  I  L  I  S :   S  L  R  M  T  C  K  A  L  C  R  W  D  L  P  K  T  P  T  R  I  *  H  C  N  H  K  :  G  L  I  K  R  L  T  *  K  L  R  C  S  H  H  S  F  V  *  E  E  R  D  F  C  V  *  E  E  I  F  *  F  Y  L  S  S  E  I  V  I  T  T  N  *  Q  Y  Y  L  K  F  N  C  T  N  F  L  F  C  *  V  M  S  I  Y  C  V  I  T  L  L  R  S  K  S  H  L  G  A  N  S  T  C  N  F  L  F  L  C  K  *  M  R  Y  *  D  V  I </second_frame>
            <third_frame>   T  G  E  D  *  *  K  N  E  A  F  T  R  S  C  T  W  L  *  Q   : G  D  R  K  S  T  N  A  *  *  N  Y  K  L  C  T  V  T  P  T  T  S  R  G  N  S  Q  F  P  *  S  R  I  L  *  N  V  L  *  F  I  S  *  L  F  C  F  I  V  P  I  H  E  V  G  N  S  E  P  K  F  G  F  P  P  L  Q  G   : Y  M  S  T  K  W  L  C  G  P  S  C  F  P  N  R  *  N  I  I  F  L  P  T  R  P  E  R  Y  S  *  W  S  T  K  S  M  L  S  G  H  I  R  *  L  T  M  P  *  P  G  N  A  I  A  S  P  *  W  I  C  *  I  S  *  S   : V  P  *  G  *  P  A  K  L  C  A  D  G  I  Y  P  K  P  Q  Q  G  Y  D  T  A  I  T  R :   A  S  S  N  V  S  H  E  N  *  D  V  V  T  I  H  L  S  R  K  K  E  T  S  V  Y  R  K  R  F  F  S  F  I  F  L  Q  K  L  L  L  L  L  I  D  N  I  T  *  N  L  I  V  R  I  F  C  F  A  K  *  *  V  F  I  V  *  *  H  Y  *  D  P  R  V  I  W  V  R  T  A  H  V  I  F  F  F  F  V  N  K  *  D  I  K  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0244C09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51535" stop="51594"/>
                    <exon start="51665" stop="51862"/>
                    <exon start="51981" stop="52062"/>
                    <exon start="52158" stop="52195"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSMKLATVNPNLDFPLSKDICQPNGSVAHPVFPIDKTSSSYQQGRSDIPNGALSQCSVDTSDNSLCRSLGMQLPPLDGFAEYLNQFPEDDLQSFVQMGFTQNPNKDMTLQSQGPHQTSHMKIEM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0244C09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51244" stop="51306"/>
                    <exon start="51391" stop="51534"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEVIHSFPNREFYEMYCDSSANSSVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51561" e_stop="51862"/>
            <exon e_start="51981" e_stop="52062"/>
            <exon e_start="52158" e_stop="52368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.944" e_score="0.993"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="51561" e_stop="51862" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.944">
            <gDNA_intron_boundary i_start="51863" i_stop="51980" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51981" e_stop="52062" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52063" i_stop="52157" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.934">
            <gDNA_exon_boundary e_start="52158" e_stop="52368" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51561" stop="51862"/>
              <exon start="51981" stop="52062"/>
              <exon start="52158" stop="52368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351423" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACCCAAATTTGGATTTCCCCCTCTCCAAGGATGTAAGTATATCATGATTTATCATTCGTTCTTTTACATGACATTCTAAAACAATATCTTGTGTTCTTTCAGATATGTCAACCAAATGGCTCTGTGGCCCATCCTGTTTTCCCAATAGATAAAACATCATCTTCTTACCAACAAGGCCGGAGCGATATTCCTAATGGAGCACTAAGTCAATGCTCAGTGGACACATCAGATAACTCACTATGCCGTAGCCTGGGAATGCAATTGCCTCCCCTTGATGGATTTGCTGAATATCTTAATCAG : TTCCCTGAGGATGACCTGCAAAGCTTTGTGCAGATGGGATTTACCCAAAACCCCAACAAGGATATGACACTGCAATCACAAG : GGCCTCATCAAACGTCTCACATGAAAATTGAGATGTAGTCACCATTCATTTGTCTAGGAAGAAAGAGACTTCTGTGTATAGGAAGAGATTTTTTAGTTTTATCTTTCTTCAGAAATTGTTATTACTACTAATTGACAATATTACCTAAAATTTAATTGTACGAATTTTTTGTTTTGCTAAGTGATGAGTATTTATTGTGTAATAACATTAT</gDNA_template>
            <first_frame> E  P  K  F  G  F  P  P  L  Q  G  C  K  Y  I  M  I  Y  H  S  F  F  Y  M  T  F  *  N  N  I  L  C  S  F  R  Y  V  N  Q  M  A  L  W  P  I  L  F  S  Q  *  I  K  H  H  L  L  T  N  K  A  G  A  I  F  L  M  E  H  *  V  N  A  Q  W  T  H  Q  I  T  H  Y  A  V  A  W  E  C  N  C  L  P  L  M  D  L  L  N  I  L  I  S :   S  L  R  M  T  C  K  A  L  C  R  W  D  L  P  K  T  P  T  R  I  *  H  C  N  H  K  :  G  L  I  K  R  L  T  *  K  L  R  C  S  H  H  S  F  V  *  E  E  R  D  F  C  V  *  E  E  I  F  *  F  Y  L  S  S  E  I  V  I  T  T  N  *  Q  Y  Y  L  K  F  N  C  T  N  F  L  F  C  *  V  M  S  I  Y  C  V  I  T  L  </first_frame>
            <second_frame>  N  P  N  L  D  F  P  L  S  K  D  V  S  I  S  *  F  I  I  R  S  F  T  *  H  S  K  T  I  S  C  V  L  S  D  M  S  T  K  W  L  C  G  P  S  C  F  P  N  R  *  N  I  I  F  L  P  T  R  P  E  R  Y  S  *  W  S  T  K  S  M  L  S  G  H  I  R  *  L  T  M  P  *  P  G  N  A  I  A  S  P  *  W  I  C  *  I  S  *  S   : V  P  *  G  *  P  A  K  L  C  A  D  G  I  Y  P  K  P  Q  Q  G  Y  D  T  A  I  T  R :   A  S  S  N  V  S  H  E  N  *  D  V  V  T  I  H  L  S  R  K  K  E  T  S  V  Y  R  K  R  F  F  S  F  I  F  L  Q  K  L  L  L  L  L  I  D  N  I  T  *  N  L  I  V  R  I  F  C  F  A  K  *  *  V  F  I  V  *  *  H  Y </second_frame>
            <third_frame>   T  Q  I  W  I  S  P  S  P  R  M  *  V  Y  H  D  L  S  F  V  L  L  H  D  I  L  K  Q  Y  L  V  F  F  Q  I  C  Q  P  N  G  S  V  A  H  P  V  F  P  I  D  K  T  S  S  S  Y  Q  Q  G  R  S  D  I  P  N  G  A  L  S  Q  C  S  V  D  T  S  D  N  S  L  C  R  S  L  G  M  Q  L  P  P  L  D  G  F  A  E  Y  L  N  Q  :  F  P  E  D  D  L  Q  S  F  V  Q  M  G  F  T  Q  N  P  N  K  D  M  T  L  Q  S  Q   : G  P  H  Q  T  S  H  M  K  I  E  M  *  S  P  F  I  C  L  G  R  K  R  L  L  C  I  G  R  D  F  L  V  L  S  F  F  R  N  C  Y  Y  Y  *  L  T  I  L  P  K  I  *  L  Y  E  F  F  V  L  L  S  D  E  Y  L  L  C  N  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0244C09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51599" stop="51862"/>
                    <exon start="51981" stop="52062"/>
                    <exon start="52158" stop="52195"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYHDLSFVLLHDILKQYLVFFQICQPNGSVAHPVFPIDKTSSSYQQGRSDIPNGALSQCSVDTSDNSLCRSLGMQLPPLDGFAEYLNQFPEDDLQSFVQMGFTQNPNKDMTLQSQGPHQTSHMKIEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="83427" PGL_stop="82185"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83427" e_stop="83206"/>
            <exon e_start="82498" e_stop="82185"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.823" e_score="0.914"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="83427" e_stop="83206" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.823">
            <gDNA_intron_boundary i_start="83205" i_stop="82499" i_length="707"/>
          </intron>
          <exon e_serial="2" e_score="0.933">
            <gDNA_exon_boundary e_start="82498" e_stop="82185" e_length="314"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83427" stop="83206"/>
              <exon start="82498" stop="82185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243194" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGAGAGGTTTTCTGTGTTGAGACATAAATTTTGCAAAGGAGATTATGTAGAGGAGAAGCAAGTTGTTGAAGATTAAGCGAAGAAGGTGGACAAATTTATTTTGTCAGAAATTCAAGCCAAGGGGGAGATTTGTTGGGTTTTATTTTCCAAGATTTCTTACCATAAATAGGTTTTCCTTTTAGGAAAAGGTTTTGAATTGACTAATCCTTTTTTTGGTAG : GAAAAGGTTTTGGATTGACTAATCCTTTTTTGGTGGGAAAAGGTTTAGAACTCTATAAAAAGAGGAATGTTCCTTCTAACTTAATTAGCATTCACAATGTAGTCTTAAGGGCTTTGAGAGTTTTGGTTAGGGAGAGAATTTATGGGTCACAGGCTTGATACGTTATCACTTGTGTGAACCTCTCATGTATTCCGAGTGAATTGGTTGAGGTTGTTTCCCTCTGTATTTTGTACTCTCATATTTATAGTGGATTGCGCATCTCCTTTGTGGATGTAGGTCGATTGACCGAACCACGTTAAATCTTTGTGTCTTTT</gDNA_template>
            <first_frame> F  R  E  V  F  C  V  E  T  *  I  L  Q  R  R  L  C  R  G  E  A  S  C  *  R  L  S  E  E  G  G  Q  I  Y  F  V  R  N  S  S  Q  G  G  D  L  L  G  F  I  F  Q  D  F  L  P  *  I  G  F  P  F  R  K  R  F  *  I  D  *  S  F  F  W  *  :  E  K  V  L  D  *  L  I  L  F  W  W  E  K  V  *  N  S  I  K  R  G  M  F  L  L  T  *  L  A  F  T  M  *  S  *  G  L  *  E  F  W  L  G  R  E  F  M  G  H  R  L  D  T  L  S  L  V  *  T  S  H  V  F  R  V  N  W  L  R  L  F  P  S  V  F  C  T  L  I  F  I  V  D  C  A  S  P  L  W  M  *  V  D  *  P  N  H  V  K  S  L  C  L   </first_frame>
            <second_frame>  L  E  R  F  S  V  L  R  H  K  F  C  K  G  D  Y  V  E  E  K  Q  V  V  E  D  *  A  K  K  V  D  K  F  I  L  S  E  I  Q  A  K  G  E  I  C  W  V  L  F  S  K  I  S  Y  H  K  *  V  F  L  L  G  K  G  F  E  L  T  N  P  F  F  G  R :   K  R  F  W  I  D  *  S  F  F  G  G  K  R  F  R  T  L  *  K  E  E  C  S  F  *  L  N  *  H  S  Q  C  S  L  K  G  F  E  S  F  G  *  G  E  N  L  W  V  T  G  L  I  R  Y  H  L  C  E  P  L  M  Y  S  E  *  I  G  *  G  C  F  P  L  Y  F  V  L  S  Y  L  *  W  I  A  H  L  L  C  G  C  R  S  I  D  R  T  T  L  N  L  C  V  F  </second_frame>
            <third_frame>   *  R  G  F  L  C  *  D  I  N  F  A  K  E  I  M  *  R  R  S  K  L  L  K  I  K  R  R  R  W  T  N  L  F  C  Q  K  F  K  P  R  G  R  F  V  G  F  Y  F  P  R  F  L  T  I  N  R  F  S  F  *  E  K  V  L  N  *  L  I  L  F  L  V   : G  K  G  F  G  L  T  N  P  F  L  V  G  K  G  L  E  L  Y  K  K  R  N  V  P  S  N  L  I  S  I  H  N  V  V  L  R  A  L  R  V  L  V  R  E  R  I  Y  G  S  Q  A  *  Y  V  I  T  C  V  N  L  S  C  I  P  S  E  L  V  E  V  V  S  L  C  I  L  Y  S  H  I  Y  S  G  L  R  I  S  F  V  D  V  G  R  L  T  E  P  R  *  I  F  V  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0244C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="92653" PGL_stop="91944"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92653" e_stop="91944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="92653" e_stop="91944" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92653" stop="91944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGGGGTACTTGTTCTTTTCCGTGACCTTGTTGAGGGCCCGGTAGTCAATGCACAATCGCAACGTCCTGTCCTTCTTCTTCTGGAATAACACAGGCGCACCAAACGGCGCCTTGGACGTCCTGATGTGTCCAGCATCCAGCAACTCCTTGAGCTGCTTCCTTAACTCTTCCAGTTCCGGGGGTGCCATGCGATAAGTCGTCATGGCAGGCGGCTTTGCCCCTGGAACCAGCTCAATTTGGTGGTCAACTTCCCTACGGGGTGGCAACCGTTGGGGAAGTTCTGTTGGCATAACGTCCTTGTTGCTGCTAAGGACATGTTTGATGCAAGGCGGCAATGGAACTGCCTCAGTGCAGCTCCCAGCGTCTTCAATCAAAGTGGAAAGAAATGTTGGCTCGCCTCTCTTGAAGCCCTTGATGATCTGCATTGCCGACAAATGCATTCCAATTTGTGGTACCCGAATAAGGGGTACCACGCAAGAACCACCGTTGTCACTGATATGAAGCTTGTTGTGACGTGGCGAGATGAAGGCATTGACTTCATACCAAAAGTCGAGTCCTAAGATGACATCAAATACATCCATCGGGGCAATTGTAAAATCAGTCTGCCCGGCCCACTCTCCTAACTCAATTGGAACTTTAGCCACAAAACCATTGACAGTAGTAGGAGTGGCGTTGACGGTCTTCAACTTGGTATTACTGGCAACATATCT</gDNA_template>
            <first_frame> T  G  Y  L  F  F  S  V  T  L  L  R  A  R  *  S  M  H  N  R  N  V  L  S  F  F  F  W  N  N  T  G  A  P  N  G  A  L  D  V  L  M  C  P  A  S  S  N  S  L  S  C  F  L  N  S  S  S  S  G  G  A  M  R  *  V  V  M  A  G  G  F  A  P  G  T  S  S  I  W  W  S  T  S  L  R  G  G  N  R  W  G  S  S  V  G  I  T  S  L  L  L  L  R  T  C  L  M  Q  G  G  N  G  T  A  S  V  Q  L  P  A  S  S  I  K  V  E  R  N  V  G  S  P  L  L  K  P  L  M  I  C  I  A  D  K  C  I  P  I  C  G  T  R  I  R  G  T  T  Q  E  P  P  L  S  L  I  *  S  L  L  *  R  G  E  M  K  A  L  T  S  Y  Q  K  S  S  P  K  M  T  S  N  T  S  I  G  A  I  V  K  S  V  C  P  A  H  S  P  N  S  I  G  T  L  A  T  K  P  L  T  V  V  G  V  A  L  T  V  F  N  L  V  L  L  A  T  Y   </first_frame>
            <second_frame>  R  G  T  C  S  F  P  *  P  C  *  G  P  G  S  Q  C  T  I  A  T  S  C  P  S  S  S  G  I  T  Q  A  H  Q  T  A  P  W  T  S  *  C  V  Q  H  P  A  T  P  *  A  A  S  L  T  L  P  V  P  G  V  P  C  D  K  S  S  W  Q  A  A  L  P  L  E  P  A  Q  F  G  G  Q  L  P  Y  G  V  A  T  V  G  E  V  L  L  A  *  R  P  C  C  C  *  G  H  V  *  C  K  A  A  M  E  L  P  Q  C  S  S  Q  R  L  Q  S  K  W  K  E  M  L  A  R  L  S  *  S  P  *  *  S  A  L  P  T  N  A  F  Q  F  V  V  P  E  *  G  V  P  R  K  N  H  R  C  H  *  Y  E  A  C  C  D  V  A  R  *  R  H  *  L  H  T  K  S  R  V  L  R  *  H  Q  I  H  P  S  G  Q  L  *  N  Q  S  A  R  P  T  L  L  T  Q  L  E  L  *  P  Q  N  H  *  Q  *  *  E  W  R  *  R  S  S  T  W  Y  Y  W  Q  H  I  </second_frame>
            <third_frame>   G  V  L  V  L  F  R  D  L  V  E  G  P  V  V  N  A  Q  S  Q  R  P  V  L  L  L  L  E  *  H  R  R  T  K  R  R  L  G  R  P  D  V  S  S  I  Q  Q  L  L  E  L  L  P  *  L  F  Q  F  R  G  C  H  A  I  S  R  H  G  R  R  L  C  P  W  N  Q  L  N  L  V  V  N  F  P  T  G  W  Q  P  L  G  K  F  C  W  H  N  V  L  V  A  A  K  D  M  F  D  A  R  R  Q  W  N  C  L  S  A  A  P  S  V  F  N  Q  S  G  K  K  C  W  L  A  S  L  E  A  L  D  D  L  H  C  R  Q  M  H  S  N  L  W  Y  P  N  K  G  Y  H  A  R  T  T  V  V  T  D  M  K  L  V  V  T  W  R  D  E  G  I  D  F  I  P  K  V  E  S  *  D  D  I  K  Y  I  H  R  G  N  C  K  I  S  L  P  G  P  L  S  *  L  N  W  N  F  S  H  K  T  I  D  S  S  R  S  G  V  D  G  L  Q  L  G  I  T  G  N  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0244C09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92489" stop="92094"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFQFRGCHAISRHGRRLCPWNQLNLVVNFPTGWQPLGKFCWHNVLVAAKDMFDARRQWNCLSAAPSVFNQSGKKCWLASLEALDDLHCRQMHSNLWYPNKGYHARTTVVTDMKLVVTWRDEGIDFIPKVES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0244C09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92458" stop="92153"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVMAGGFAPGTSSIWWSTSLRGGNRWGSSVGITSLLLLRTCLMQGGNGTASVQLPASSIKVERNVGSPLLKPLMICIADKCIPICGTRIRGTTQEPPLSLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 88 chains have been computed
$ 
$ memory statistics:
$ 51056 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 6382 bytes was the average size of a spliced alignment
$ 11784 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1964 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 109 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-07 09:10:25
-->
