<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-27 02:50:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317449" ref_strand="+" ref_description="SGN-U317449        Tomato 200607 #1 [21 ESTs aligned] arabidopsis/peptide: | Symbol: None | bile acid:sodium symporter family protein, low similarity to SP:Q12908 Ileal sodium/bile acid cotransporter {Homo sapiens}; contains Pfam profile PF01758: Sodium Bile acid symporter family | chr1:29551498-29553717 REVERSE | Aliases: T30F21.11, T30F21_11(evalue: 7e-140, score=494) genbank/nr: gi|18412023|ref|NP_565182.1| bile acid:sodium symporter family [Arabidopsis thaliana] gi|16648877|gb|AAL24290.1| Unknown protein [Arabidopsis thaliana] gi|21593677|gb|AAM65644.1| unknown [Arabidopsis thaliana] gi|23197632|gb|AAN15343.1| Unknown protein [Arabidopsis thaliana](evalue: 6e-138, score=494)">
      <seq>aaatatttccttcgataacaatcaaataagaaagagcttatatttttgttaattcaatcaattccaaaacaaagtgtcaagatgaatgagcccaatttaaattttaaattgtaaaaattttcaaacttattctacatccgcttcaccccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacggcaagtaacattgtcacttacattgcacgtggaaatgtggcgctttcagttttgatgactgctgcaagtaccctatctgccgtggtgatgaccccttttctaacagagaaacttgcagggcaatttgttgcagtagatgcagctggacttttcatgtctactttacaggtggtgcttcttcctgtattagctggtgcatttctgaatcagtatttcaaaggcctagtcaaaatcgtgtctccattgatgccacctattgctgtagcaactgttgctgttctttgtggaaatgcaattgcacagagttcttctgcaatccttatgtcaggacaacaggttgtcatagctgctgctcttcttcatgcgtctggcttcttctttggctatgtactcgcaaggatgcttggagttgatatgtcctcctcaaggacaatatctattgaagtcggaatgcagaactcggttcttggagtagttctagccactcagcactttggtaatccacttactgcagtaccatgtgccgtttctagtgtttgccattcgatatttggcagtgccttggctggcatatggaggcgttctattccagataaagtgcaggactaagtcactctgttggcaattctatgatggtctgaatataagattgtagtttttcgcagtgatcatcaagcttggtagtcagtgaattcggagatctttttatttttttgggaagttcatagtgatgtctggcgaatcagcattaatctgtctgtagtaaaaccaattttactttgttggtggtggcggtagtaaaacctataaacatcttgatcattggcaggaatttatctgcatctgatatctaattcttgttctgtaatgatagtgttggataacttatgcgttgtgtcgactgtcgagtgagcaagagtattcttgtgtcacagtatttagtgatgttttgatcatttcaagtgctttaaattttgaagaacaaaattgtgtttttcaatagaatccaggcagtcactcctagtcagagtggatagattgggtaataatgatgtatgtaaactcatagtaagaatgtagaattgatataatattattcaggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5275" stop="62264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5575" g_stop="6323" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6324" i_stop="6931" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6932" g_stop="7025" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="843" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7026" i_stop="7103" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7104" g_stop="7137" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="844" r_stop="877" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7138" i_stop="7236" i_length="99">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7237" g_stop="7291" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="932" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7292" i_stop="8083" i_length="792">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8084" g_stop="8167" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="933" r_stop="1016" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8168" i_stop="8248" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8249" g_stop="8536" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1017" r_stop="1304" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8537" i_stop="8642" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8643" g_stop="9101" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1305" r_stop="1760" r_length="456" r_score="0.965"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9102" i_stop="9455" i_length="354">
            <donor d_prob="0.000" d_score="0.68"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9456" g_stop="9466" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1761" r_stop="1769" r_length="9" r_score="0.818"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9467" i_stop="9678" i_length="212">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9679" g_stop="9760" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1770" r_stop="1849" r_length="80" r_score="0.549"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="9761" i_stop="10183" i_length="423">
            <donor d_prob="0.838" d_score="0.50"/>
            <acceptor a_prob="0.757" a_score="0.49"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="10184" g_stop="10222" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1850" r_stop="1886" r_length="37" r_score="0.487"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="10223" i_stop="11062" i_length="840">
            <donor d_prob="0.914" d_score="0.49"/>
            <acceptor a_prob="0.000" a_score="0.51"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="11063" g_stop="11143" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1887" r_stop="1968" r_length="82" r_score="0.543"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U317449" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>1976</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5575" e_stop="6323"/>
          <exon e_start="6932" e_stop="7025"/>
          <exon e_start="7104" e_stop="7137"/>
          <exon e_start="7237" e_stop="7291"/>
          <exon e_start="8084" e_stop="8167"/>
          <exon e_start="8249" e_stop="8536"/>
          <exon e_start="8643" e_stop="9101"/>
          <exon e_start="9456" e_stop="9466"/>
          <exon e_start="9679" e_stop="9760"/>
          <exon e_start="10184" e_stop="10222"/>
          <exon e_start="11063" e_stop="11143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTCACTTACATTGCACGGTAGGTTGACGTTATGAAGATCCTTTAATATCATCATTATTCAATATTATCATTTTCATTATAATACCTACTAGGCGTTGATACTTCATTTTGTTGCAGTGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTGGTTGGTTGCTTTTATTTCATTATTTGGTTGACGGATATCTTATCCAATATAAGACTGTGCATAGTGTGTCGTGTGTTTTATGCATCCTGAGAACAATTGACCTAAAACAGTTTGTTCCTAAAAGAAACTTTCACGAAATAGTTTTTACTCTAAACTCTCTTTCTTACGCGAGACAGAAAGTGTAACTACCGAAGCTCTTTCAACTTGTCCTGTCTTTGGATAAGTATTGCGGTTAAGTCAGTTAACAAGATGAGAGTCGGAAAATTGAAATAAGAACTCTTGAGATGAAAGCTTCTGGACAACAAATAAATTTATTGTTGACAGAATAATTAAAACAAACTTGGGGAGCTTCTTTCTTCAAGTTACTTTGAGTTTAGGAATCATCTCGATTTTCAAAAGCATGTAAGCATTGGGAGGAGTTGGTCTATTTTCCCTAAGAGCAATGCAAGCACAATAAGAATATCAAAGCAGTCAATTGTTGTAATAGTCAGAGACAAAGATAAATCGTCAAGGTGTACACCAGATATAGACGGGATGAATTTGAAATATGTGTAGTGAAGGGCCTGAAGGCTTCAGTGCTAGTTACAATCATTTAAAAAATTTAATAAAACCCTACCATCAGAATAGTTGTGCAAACAGGTCCTACTAATTTACCTCCAGACAGCAATCAACTTATTTATTGTTGATTGAATGTATCACATGCCTCCCTTAATATCATTGGAGATACTGTCGTCATATTTGATGGTGTGAGAGCTTCCTTAAGTTGATTGGCCTTTCCTGTTATCCATGCAGGTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAGGTCCATTTCTTCATCTGATTATTGGCTCATCAGTATTGTATACCTTGTCATAATAAACAATAAACCCTGCCAAAATATCAGGTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAGGTAAGAAAATATTTGTTTACTTCCGATCCTCATTATATAACTGAAAAAAATCTTCATAAATGGCAAAGATAACACTTGATATATCATGACTTTGTTTGTTTTGCAGAACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGTATTGATAGTGTTGGATAACTTAAAATATTTCTGCAGATTTACGTATTTAGTTGAGCGATAAACAAGATATTCAGTTAAATCCACATAACCCACAGTAGATTTGCCTCTCGTGCAAAGCATATTCCATTTAGAGCTGTAAATAGGAGGGACCATATGCAAGTCAATAAATATAGAAATCTTGCTTTAGCAGGAAAGAATCCCAGGGAACAGCAAAAGTTTAAGAAAGGGTACAATTTCTGTTAATATATGCCACAAATAATGTTAGCCTCCGTCACATTCGTTTACTACAAATTTAACTACTTTTATCCTCACATAAAAATAGAACTTTTGAAATTTATGATTTATAACAAGAGTGTCATTAAAATTGCTACGAGTGGACTACATGTATATTTGACTAACACAGGCCTAAGAGTAGCATATACATTATAAAATGAGCAAAGCTACTTGTGAAACAGATGTGTGATACAAAATAACTTAATGTGGTCCTCTGCTGAATTTCATCACACTCAGACCCCACTCTACAGTTGCATATTGCAGATGTATCAACAAATCATTTATCTCTTGAAATTTTAGTGGTTTTTCATATATATATATATATATATATATATATATATATATATATATATGTTTTATGTCAAAATATTGGGTTTCGTTTCAGTAGCAGATCAAGAATTTTCATCATTTGGGATTTGAACTTGGAATCTCAAGGTGGATTTTAAACCCCCTAAATCATTGAGTTCTAATTTTGTGTTCAACGGATTCAAAATCTTTTTCTATATATTGAAAAAATAAAAATTATAATATATATATATATATATATGTATATAATGTATGTTTTTATTAAGGAAGTTTAGATGAACACTCTCAACCCTAGATACGCCCATATTTAGTTAAATACATTGAAACAGGCTCCATCTATATCTCCCTTGTTTAGTTAGACTGTGTTAGGTAGAAGAAACCTTGGAGAAAAATACCAGGATTGAAGTACTACTATATATTTGTTAGAGAGTGTTTTATCTCGAGTCTCAATATAAAATTTTTCTTATGCGAATTTAGATTTAATCGAATTTCAAAATAAATATCGAACATAAAAAAAAAACTTGCATGGTATATATATATGTTTCCGTTAAGATGGACCAGG-A-TCACAAATAGGACATGTTTGGACCGGAGGCAGAATTAAGTTAAAATAGGGTTCAATTGATTTCCTAGAATATGTACTGCCTTCTAATGAGACTATACAAAGCAGCAGGGAGGTTGGAATATAGCATATCTGTGTTTAAAGTATAGCTCCGCACCTTACTCATCGTATAATAACAGGGTTTCTATCGAAAAGTTTTGTTGCTTGAATAGGGTAAAAATGAATTTATTTGTTATCTTAGCTTTTAAATTTGCTCTACCTAAATAACTTTTTATTATGACAAGGAAAATCCATAGTCGCTATCCTTTTGGTGCACACATGTAAAATTTTACTTCTATGCAATATCCCTCAAACCACACAGGAGAGGTAATCCGTACTAAGTAAGTCTGGTGAGACAAGCTCGACTCAAAAGAAACACCGCTAGCAAGAAATTTCAAACTTGACACCTCCGACATGAAAATTTTAAGCCCAAACCACTGAATCACCCCAATACCGCAAAGGGTTAAATGTCAAAACAAGTTCAAAAACGGTGACCAGGAAAAATTGCTCCATGATAAGCCTTTTTTCTTCAAATCCTAAGATTATGACTTCAGATTACCGAAAAAAACAAAAAGACATGAGCTTATAAGAAGAGGTAAAAAAATAAGTACTAATTGCTTTGGACCATAGGTATCAAAATCACGTGTATAATTTTATTTTATTTTTAGTTTCTTTAGGACCTACTGCAACTCATCTCAAACTTTATGTCACATGAGAATTCATTTTGAGAAACAAAAGGAGCTTTTGATTAAATTCTTGATATTTGTGAGGTGAAACAAACAAATGGAAGTAGACAAATATAGTTACATTAAACTCGTGATTATTTGATACACTTCTCTTCCAATTTTATTTATTCATTTATATTAA-AATTAAATATTTATTTTTATTTAATCAATTAAAAAAATTTAAACAGA</genome_strand>
        <mrna_strand>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACGGCAAGTAACATTGTCACTTACATTGCACG...................................................................................................TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG.................................................................................GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG..........................................................................................................AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGTAATGATAGTGTTGGATAACTT--ATGCGTTGTGTCGACTGTCG-AGTGA..................................................................................................................................................................................................................................................................................................................................................................G-C-AAGAGTA....................................................................................................................................................................................................................TTCTTGTGTCACAGTATTTAGTGATGTTT-TG-ATCATTTCAAGTGCTTTAAATTTTGAAGAACAAAATTGTGTTTTTCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATCCAGGCAGTCACTCCTA-GTCA-GAGTGGA-TAGA-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGTAATAATGATGTATGTAAACTCATAGTAAGAATGTAGAATTGATATAATATTATTCAGGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330803" ref_strand="+" ref_description="SGN-U330803        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | cyclic nucleotide-regulated ion channel / cyclic nucleotide-gated channel (CNGC4), identical to cyclic nucleotide and calmodulin-regulated ion channel (cngc4) GI:4581203 from (Arabidopsis thaliana) | chr5:22042512-22047286 REVERSE | Aliases: None(evalue: 3e-32, score=134) genbank/nr: IQ(evalue: 3e-32, score=140)">
      <seq>ttttttttatctccatatcccaaatccataaaagaaaaaaactagcacaaaaaaaaaattaatggctagtcatcatgaacttgaactatcaaataattatagtgatcgaagtgacgatgacatggacgaggacgaggatgagcaagataacatagaagaggaggaaaaagaagatgataattcaaatgactacaacatttgtagtagtcgtagtcgaggaggaggattgacagacttctttttcttggaaagtcatagaccctagagcgccttgggttcaagaatggaatcgagtatttttattagtatgtgccacggggctatttgtggatcctctctttttctactctctctctatcagagagacttgcatgtgcctttttatcgatggttggttcgcggtaacggtcaccgttcttcgatgcatgaccgatgcgatgcatttatggaacatgtggatacgattcaagatgcataaattacgtccttacaatgaaaaaatggatgaaaatcaaattactagtagtagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="13312" stop="14442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13612" g_stop="14142" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U330803" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13612" e_stop="14142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCACAAAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTC-TTTTCGTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGCGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTTGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</genome_strand>
        <mrna_strand>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCAC-AAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTCTTTTTCTTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGAGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTCGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342681" ref_strand="+" ref_description="SGN-U342681        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | cyclic nucleotide-regulated ion channel / cyclic nucleotide-gated channel (CNGC4), identical to cyclic nucleotide and calmodulin-regulated ion channel (cngc4) GI:4581203 from (Arabidopsis thaliana) | chr5:22042512-22047286 REVERSE | Aliases: None(evalue: 5e-79, score=281) genbank/nr: ATCNGC4(evalue: 4e-77, score=281)">
      <seq>taagacgcatgcagaatctctctggatacatttttggtactgtttggtggggaattgctcttaacttgattgcttattttgttgcctcccatgcagtgggagcatgttggtacttgctaggaatccaaagggcagcaaaatgtttgaaacaacagtgtagagttacaaatggttgtagcctaagaatgttggcatgtgaagagaaaatattttatggaacaagtagtttggtgaagcatagaagtagagtcatatggggtgagtccaaaattgcaagatcaacatgtctagcctctgaacacaattttgattatggagtttataaatggactgttcaacttgtcacaaatgagaatcgttttgagaaaatattatttcccatcttctggggtctcatgactctcagtacatttggaaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="15690" stop="17084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15990" g_stop="16081" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16082" i_stop="16459" i_length="378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16460" g_stop="16773" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="406" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16774" i_stop="16933" i_length="160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16934" g_stop="16949" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="422" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U342681" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15990" e_stop="16081"/>
          <exon e_start="16460" e_stop="16773"/>
          <exon e_start="16934" e_stop="16949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGACGCATGCAGAATCTCTCTGGATACATTTTTGGTACTGTTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCATGTAAGTACACTACTTTTTCGTTCATCTTTATTTGTTCAGTATATTATTTTTACTTGTCATTTTTAACAAGAAAAAACTTGTTTTTATTACATGTCATTTGTTCTGTTTTATATTTATGCCTTTCAATTTTGGGTAGACATTTAAATTTGTAAAAAGTTGAATGAGTAGATACACATAGATTCCCTACATGACAATTTGTATGAGACGTCATGTGTTTAGTACTTGTTCAACTTTATACAAGTTTTAAGTGAGTAATATCGTTCATATCAAAAGTTAAAGAACAGACATAAATATTAATTAACGTTAAGTTAAAAGACACGTTTTTGTGTTATACCGAGTTGTTACACTCTAAAATTATGAGCATATATATGTATACAGGCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAGGTACGTACGTATTTTTATTTTACATCGTTTTTATCGGTATTTTAAATGCGAAATAAATAGTTACTAGGTTGGAAGTCTGAACCCATAACTTTTACTTTAGTATAAAATAACAAATCAGAATATTGTATTTTATTGAATTATATGAAAATTTTACATGCAGTACATTTGGAAACTTG</genome_strand>
        <mrna_strand>TAAGACGCATGCAGAATCTCTCTGGATACATTTTTGGTACTGTTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAG................................................................................................................................................................TACATTTGGAAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326304" ref_strand="+" ref_description="SGN-U326304        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | cyclic nucleotide-regulated ion channel / cyclic nucleotide-gated channel (CNGC4), identical to cyclic nucleotide and calmodulin-regulated ion channel (cngc4) GI:4581203 from (Arabidopsis thaliana) | chr5:22042512-22047286 REVERSE | Aliases: None(evalue: 2e-144, score=508) genbank/nr: ATCNGC4(evalue: 2e-142, score=508)">
      <seq>tcatgactctcagtacatttggaaacttggagagcacaacagattggctggaagatgtattcataatcattgttctcactactggtcttcttcttgtcactatgttgattggtaatatcaaggtattcttgcatgcaacaacatcaaagaaacaagcaatgcaactaaaaatgagaaatgtagaatggtggatgaggagaagaaggttgcctcaaggatacaagcaaagggtcagaaattatgaaaggcatagatttgcagcaacaagaggagttgatgaatatgagatgataagcaaccttcctgagggacttagaagagacatcaaatatcatctttgtttggacttggttagacaggttcctttgtttcaacatatggataatttggtcctggagaacatatgtgaccgcgtaaaatccttgattttcactaaaggagaaacaataacaagagaaggtgatccagttcaaagaatgttgttcatagtgagaggtcatctccaaagcagtcaagaacttagagatggtgtcaaaagttgttgcatgttgggccctggaaacttcagcggcgacgaacttctctcatggtgcctccggaaacccttcgtggagcgtctaccgccttcctcctcatcgctagtgactctcgagaccacagaagcgtttggcctcgaagcagatgatgtcaagtatgtcactcaacatttccgctacacatttgtgaatgagaaagtgaagagaagcgccagatattattctccaggatggcgaacttgggctgccgttgctattcagttggcctggaggagatatagacaccggctgactctcacgtcgttgtccttcattcgaccaagacgaccgttgtctcgatcttcttcattaacagaagacagactcaggctatatacagctttgctcacttcaccaaagcctaatcaggacgattttgattttttaaaaagagcaacaaacaaatggaatgttaccttctttctgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="16631" stop="19949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16761" g_stop="16773" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16774" i_stop="16933" i_length="160">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16934" g_stop="17042" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="122" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17043" i_stop="17444" i_length="402">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17445" g_stop="17681" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="359" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17682" i_stop="18632" i_length="951">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18633" g_stop="18719" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="446" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18720" i_stop="18840" i_length="121">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.018" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18841" g_stop="18983" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="589" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18984" i_stop="19233" i_length="250">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19234" g_stop="19649" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="1006" r_length="417" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U326304" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1005</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16761" e_stop="16773"/>
          <exon e_start="16934" e_stop="17042"/>
          <exon e_start="17445" e_stop="17681"/>
          <exon e_start="18633" e_stop="18719"/>
          <exon e_start="18841" e_stop="18983"/>
          <exon e_start="19234" e_stop="19649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGACTCTCAGGTACGTACGTATTTTTATTTTACATCGTTTTTATCGGTATTTTAAATGCGAAATAAATAGTTACTAGGTTGGAAGTCTGAACCCATAACTTTTACTTTAGTATAAAATAACAAATCAGAATATTGTATTTTATTGAATTATATGAAAATTTTACATGCAGTACATTTGGAAACTTGGAGAGCACAACAGATTGGCTGGAAGATGTATTCATAATCATTGTTCTCACTACTGGTCTTCTTCTTGTCACTATGTTGATTGGTAATATCAAGGTAACCTTCCTAAACATGAGTTTCAATATAGCTATTCAATTTTTCTTGTATTTATATTTTTATATTTTGAATTTCATAGTGTAGATGCTGACTCTGTTAGTGTAGAGAGCATGTGATGTTATTTGGGATTGTTTGATTGCTGATTATAGTTATGTACGTAGGAATTGATTTAGTTATTTCATCATGTATAAAAGAAAATACATAAATTGACTGAGATCTTATACTACATGTGTTTATTTGTGTAGAATTATAGAACGATGGACAAACATGGTACATGTTATGTTGAATTGTATACCAAGTGCATACGTAAACAATTCACCTCCTAACCAGCAACCAAACAAACGTAAAGGTGTTGTATATGTGGTGATATAATAGTAATTATAATAATGTTGGTGTACGTAGGTATTCTTGCATGCAACAACATCAAAGAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAGGTAAATTTTTTCTTAGTTTTCTTTTTAGGTCAAATTTTTGTTTTTAAACACTACTTGTTCCAGTTTATATTACTAACTTTCTCTTTTACGAGGAGTCTCAAAAAGAACAACATATTTCTATATTAAGTAATGATTTAATTTTATCTAGACCACAAGTTTCAAAAGTCTATTTCTTTCTTCAACTTTGTATCAAGTCAAATTAACTCAATGAGCCGAAGGGAGTGTGTTTTTGACACTCGGAAAAAAAGCACATTTTTCACTCATTTAGTAACTATGGGGAAATTTTTGGACCAAAATATCGACTGTAAGGACATTTTTGAATCAAAGTATTGGCGGCAAGGACATTTTAGAGTTAAACTATAAAAAGTGAAGAGCCATTTTTGTTCATTTCACATAGTTTATTTTTTACCATTTCACTTAAAATTTAATAATTTTGTTTTACTTTGCTAAATTATATGTCAAATTAAAATTGGACAAACAAGTTAAAATGGAATGAGGATTAGAACTTGGGGTTTTAAGTTCTTGCAGTACAAGTACGTACCTTTTTCTAGAATTTGATTGGTGTATTCTTAGTTTGAAGGGACTGAATAACATAATGGGCCTAAATGTGGGATTGATGATCATTCAATTTTGATTTTATTTAATTCAATCATATTTTGTAACGAAATAATCGTTCGATTTTATCATAATATTTACGGAATTTATTAAATTACTTTTTGTAAATAAAAAAGTCACACAATTGGTATTTTGTTGTTGAGTTGTTGTGATTCTTAGGCGAAGTTGAATAGAATAAGCATTCGAACTTCCTGTGATATTTGTGCTAAGTTATGTTATTTTTGTTTTGTAACTTTGGTGAAATAAAATAAAAATTGAAATCGACTGAGCTTATCTGGGATAGAATCATATAGATGTATTTCCCAAACTTATTATTATTTGCACATATTTTTTCAGGTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACAGTAAGTTCAAAATGTGATGTAAACATTCATATTCCTAATACATGTCACAAATATTTCATAGAATTAGTTTAATGTGCCTACAAACTGATCCAGACACCACACCACGGTTTTTTTCTTAAAGATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATATTTTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGA-TTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATG</genome_strand>
        <mrna_strand>TCATGACTCTCAG................................................................................................................................................................TACATTTGGAAACTTGGAGAGCACAACAGATTGGCTGGAAGATGTATTCATAATCATTGTTCTCACTACTGGTCTTCTTCTTGTCACTATGTTGATTGGTAATATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCTTGCATGCAACAACATCAAAGAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACA.........................................................................................................................ATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATG..........................................................................................................................................................................................................................................................GTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U338325" ref_strand="+" ref_description="SGN-U338325        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | cyclic nucleotide-regulated ion channel / cyclic nucleotide-gated channel (CNGC4), identical to cyclic nucleotide and calmodulin-regulated ion channel (cngc4) GI:4581203 from (Arabidopsis thaliana) | chr5:22042512-22047286 REVERSE | Aliases: None(evalue: 5e-49, score=191) genbank/nr: ATCNGC4(evalue: 4e-47, score=191)">
      <seq>cggaacttagagatggtgtcaaaagttgttgcatgttgggccctggaaacttcagcggcgacgaacttctctcatggtaagtttaggagtgagagtagttgtttgtatttgggtaattaatttgaaaaacagatctagtaaactagaatggtagtgtacacaaggttaattcactctaggattgatggtcccatcccaataatcactaaaataaaatgataacacctttggcttcccagaatcttgggtaaacaggctttcgtatattttgatgtgttactagcctgaatattttgtgtgttcttcattcattttttccccccaacaggtgcctccggaaacccttcgtggagcgtctaccgccttcctcctcatcgctagtgactctcgagaccacagaagcgtttggcctcgaagcagatgatgtcaagtatgtcactcaacatttccgctacacatttgtgaatgagaaagtgaagagaagcgccagatattattctccaggatggcgaacttgggctgccgttgctattcagttggcctggaggagatatagacaccggctgactctcacgtcgttgtccttcattcgaccaagacgaccgttgtctcgatcttcttcattaacagaagacagactcaggctatatacagctttgctcacttcaccaaagcctaatcaggacgattttgatttttaaaaagagcaacaaacaaatggaatgttaccttctttctgttatgagataggagcacatccccctccctctatatgtccttcaattatccattcatgtgatatgtagtagtctcttcgtttcaatttatgtgaattcgtggacacccgagttaagaaagaaagaaaaatttgatctacagagtctgtagattttgaggtcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="18610" stop="62264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18908" g_stop="19824" g_length="917"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="920" r_length="920" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U338325" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18908" e_stop="19824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATA-TTT-TGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATGAGATAGGAGCACATCCCCCTCCCTCTATATGTCCTTCAATTATCCATTCATGTGATATGTAGTAGTCTCTTCGTTTCAATTTATGTGAATTCGTGGACACCGAGTTTAAGAAAGAAAAGAAGATTTTGATCTAC--AGTCTGTAGATTTTGAGGTCATGTAGAACATCTCAGATCAA</genome_strand>
        <mrna_strand>CGGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATAATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTACTAGCCTGAATATTTTGTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATGAGATAGGAGCACATCCCCCTCCCTCTATATGTCCTTCAATTATCCATTCATGTGATATGTAGTAGTCTCTTCGTTTCAATTTATGTGAATTCGTGGACACCCGAGTTAAGAAAG-AAAGAAAAATTTGATCTACAGAGTCTGTAGATTTTGAGGTCAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321292" ref_strand="+" ref_description="SGN-U321292        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | vesicle-associated membrane family protein / VAMP family protein, similar to VAP27 GI:6688926 (Nicotiana plumbaginifolia) | chr5:21975440-21977827 FORWARD | Aliases: MJP23.9, MJP23_9(evalue: 2e-83, score=305) genbank/nr: gi|18423592|ref|NP_568804.1| VAMP (vesicle-associated membrane protein)-associated protein family [Arabidopsis thaliana](evalue: 1e-81, score=305)">
      <seq>taaattaaagtcaacttttagcttcactaaacgacaatattcattcccctaaatttgtttatggcctgaaattgatagttatcatcggaataccaccatggctgccgtcgaccaccgcacgcgacagcagtccaacggcaaactctcgtggctttgccccttcactaaatccatatttccggctaagcgtcggctccggcttgatccttctaacaatctctactttccatatgaacctggaaagcaggcgaagagtgccataaagattaagaacacaagcaaatcttttgtagcattcaagtttcaaactactgcaccaaagagctgctacatgcgacctccgggaggtattcttgtacctggggaaagtttgattgccactgtcttcaagtttattgaacaacctgagaacaatgagaagcctatagatcaaaagaccaaagtaaagttcaagatcataagtttgaaggtgaaagaaggaactgattatgtacctgagttgtttgatgaacaaaaggataaagtctgtattgagcgtactctaaaggtggtgttcttggaccctgaacgcccttctccagcactggataaactaaaacgtcagctggcccaagctgaggctgcaacagaagctgagaagaaacctcctgttgacacaggtccgaaagttgtgggagaaggcttaatagtagatgaatggaaagagcggagggagaggtatcttgctcgccaacaagttgaggcagtggattcagtaaagcagtagagagtgtttatgtaagtgcgtctttttccagaatagcaatgtataatcagatatgcacttcttattattgcctttctttggattgatggtgtagaaggttaatgcaatgcttcatgtaaagaagaacactgagtggagatttaagattatataagattagaaataattatattcaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="24258" stop="19557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23958" g_stop="23729" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23728" i_stop="23105" i_length="624">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23104" g_stop="23034" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="301" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23033" i_stop="22684" i_length="350">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22683" g_stop="22602" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="383" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22601" i_stop="22481" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22480" g_stop="22362" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="502" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22361" i_stop="20488" i_length="1874">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20487" g_stop="20410" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="580" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20409" i_stop="20327" i_length="83">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20326" g_stop="20207" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="700" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20206" i_stop="20111" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20110" g_stop="19857" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="954" r_length="254" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U321292" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>954</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23958" e_stop="23729"/>
          <exon e_start="23104" e_stop="23034"/>
          <exon e_start="22683" e_stop="22602"/>
          <exon e_start="22480" e_stop="22362"/>
          <exon e_start="20487" e_stop="20410"/>
          <exon e_start="20326" e_stop="20207"/>
          <exon e_start="20110" e_stop="19857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTAAAGTCAACTTTTAGCTTCACTAAACGACAATATTCATTCCCCTAAATTTGTTTATGGCCTGAAATTGATAGTTATCATCGGAATACCACCATGGCTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCATGTGAGTCATCGCTCCTAAACCCTATACTACTGTATTGCACTTTAAAGTCGTCAGGTTCGAAGAAATTGTTATTGTTTGAATTATTCAGAGTACGAAGAGAAGTAATCTGGGCTCAAATTTTGTATTTTTGTTGAAAAAATTCATTTCATATGTACAATAGAACTCATAAACTAAAAATCGTAGCTTTGCCTCGGATTATTTACTAGTGTAGGGTGGAGTAGTAAATACTGACAATCAAGTGATATATAGTCGAATTTATGACATGTGTAAAGCAAAATTGGTTCTGATAATCGTGGTGTCAGGGTCAGCTCGTGAGCTCCTCGATTAACTCCATGAGATACCTGTTATCTCTCACCAGCAATAGGTACCGAGTAACTTATCCACCATGGCTAGAACAGATGGGGAAAAATCACCTACTGTTTTGTCTCTTCTAGGAATTAAACCTGAGACCTTATGATGCTCAACTCTCTTTTATACACTTTGAAAATGATTTTTATCAAGGAAAACATTTTCCGTTGTACCAAGTAGTATTATTTTAATGTTTGAAGCAACAAATTTTGTTTTAGCTATGTAATGTTGGCAATGATAGAATGATGGTTGCTGTTTTACTTTTATGTCCTGAAGATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAGGTAAAATATTTTCCCATATTTCTTGTGTTTGCAGCCTAACAAGCTTTTGGCATTCATAACAAATGCAGATTTTTAAAATTTTTATTTTAGATGAAACACAGATTTGAGTATGCGGTGCCATTGATATTTTTCCAGCTTTACCATTTCTGCATCACTTTTTGCATGCAGTAGCTTACTGATTTATAACTTGCTTAAGTTATAAATTTTTGTTTCTTGCAAAATTCGATTCAAAGATATTGTATTGTTATCTAAATCATCAATCCATGTGGATGATTAAATAAGCAGTGGTTTAAGCTTCTAATTCCTTTTTGAATTTTTAAGTAAGTTTCTGGTTCCTTTTGAATATTTAGTTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTGGTATAGTCTAAATTTCTCCTCACTTTTATTTCAATTAATTTAATATCCTTTTTGTTTTCAGTGGAAAACAGATTTGGTTTTACATCTTCCATTTATTATCTGTTATGCATCTGATTGACAGTCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTGGTAAGTAAATCAAACTTCTAGGCCTTGAAAAATTTCAAGCTTCTCTATTAAACCACAAATTCTTTAGGTGCCATCACTGTTCCTTGGCTTATATGTATGTGTACTTTGTTCTGTTACACACTGAACTTGTTACTGACAGAATTCTGTTTATTAGTTATCCACTTACAGCAAATTTTCAAACTTGAATGGATTTTGTAGATCATGGATTTAAACATACTTTAAATTGGAAGTCATTAAGTTTCTTGTTTTCCTTTCTATTCTGTGTATCTTCTTTGGTTAGAATCCAATTCAATTTGCTCAAAGATATTTTAGAAACAATCATTAAGAAATATAAGCTTTTGTTATCTTCAGTGTTAAATAATAGAGTATATTTTCATCAGATGTTTTGAATGAAAATAGGGGAGTTCCATAAAGCTAACAACTGAATATTCTATGAATTGCTGGCAGCCTGACACATTGACATCTTGTTAGATGATTGTTTCTTTCTAACTTCAATTAAGTGTGCATTCAGTGTGAAGGAAATTTTTTTCTTGAATAATGTTTTCTAGAAAAATAAGTGGATTTGTTACTTATTTTCTAATGTTCGGTATGTAAGCTAAAAATATCATCCTAAAAACATTTGCATGCATATAATCTAGACAAATGCTATGAGAGTGGGGCGGGTAGGGATATGGGGTAGTGGTGATGGGGGCTATGAGCATGGGGGATGAAGATGAGGTGTGTTGAAGGATGGGGGGAGCACAATCTTGTGGAATGTCACTTGTGGAACTTGTTTTCCTTACTTCCATCAGGGAGGTCATCTTCCTCATTTTAAGGAACTTATTTAACTTTTTTTATAGAAAATGTTTTCAAAACAATTTGATCAGCTGAACATGGGAACATTGGAAACCGTTTTCGCATATCTTCCATTCTGAACACTCCCTAAATATATTAGTAATTTGTTAGATGAGGTTACAAGCTATGCAGTTAATGCCCTTTAGTTAAGAGAGTAAGAGACAAATCTGTTTGACCAACGATCTAAAGCTAATTGGTGCTGGCTATATTCATATGGTGTTGTTTCTCTTCATCTTCCATTCACTTATTTAGGAGTTGTTCTAACCACTTTTGTTGGCGTTCTGCAAAATTGTTGATTGAAGATGTTTTCCTGGTACCTTCTTTTGCTTAAAGAATTATGAAGTTGCAAGAAAAGAGATGCTTTGTTTTTAGCAACTCATTCCCAAAATAGAAAATTCATTGATGAAATCTTGTAGAGATGTGTTCATAATTGTAGCAAAACCATGAACTTTCCCTCCCTGCTATCTACGTATTCCCATTGCCAGGAAAACCTGATGTTGGCGATTTCTTCAATGAAAAAAGCCTTTGACATATAGGCTTGGTCTGAAGGCTTTCTTTTGACAAGTGTCTTAACTAATCTTTATAGCTTAATCAGCTAAACATCTTAATATTTTCTTTTATGATGAAGAGAGTAGCATTACCGAGATCGAAATCTTTTCAGAACTTAATGATATTTAGTTGCTTTTGCTTACAACTCTGAAGTATAATTTTCCACCTCCTCTATTACAAAAGATGAGGACAACAATTGCATACATAATCTATCTTAGAGTCATAGTTTTTATCATTCTGGATATCTATGATTCTTTTTCCTTTCGTCATCATGTGTTACTCCTAGGAAAGTAGTCTTGGTGCAACAGTAGGAATACATTTGACCTGTGTGCTATTATTGGTACAAAAAACTTTGTCATGTAAGAGGTAAATCATAGGTCGCAACCAAAACTAAAATGTCAGATTTCTGTTGCCCTTATATCGAATATCTGGTCTGTATCCGAAGTAATAGTTCTTAGTGGTGTAGCACTCAATTGGTTTGTTTTATGCAGTTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCAGTAAGCGTTGAACATGTTATATTTGTTTGTTATGCATTGTGCTAATGGGCAATCTCCAACCAAAGCTATTTGAATGATTAAAGGCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGAAGCTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGGGTAAGTATCTCCTGTTTGTGTAAATAAATGAATAATTCTAAGTTCCGACTTCCTTCATCCCTCTTACAATGTGTTTCTGCTCACTATGCTTTATAGAAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTCTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAAAAGATACAA</genome_strand>
        <mrna_strand>TAAATTAAAGTCAACTTTTAGCTTCACTAAACGACAATATTCATTCCCCTAAATTTGTTTATGGCCTGAAATTGATAGTTATCATCGGAATACCACCATGGCTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAG..............................................................................................................................................................................................................................................................................................................................................................TTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTG.........................................................................................................................TCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCA...................................................................................GCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGAAGCTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGG................................................................................................AAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTCTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345712" ref_strand="+" ref_description="SGN-U345712        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | diacylglycerol kinase, putative, contains INTERPRO domain, IPR001206, DAG-kinase catalytic domain | chr2:8996693-9000013 REVERSE | Aliases: None(evalue: 8e-113, score=403) genbank/nr: diacylglycerol(evalue: 6e-111, score=403)">
      <seq>aaaaaagaatcctggtattaactgccagtccgtgaagtcgttcctgaatcaagtgaaaaatggaaaagaaatgaaagttgacagctggcatattgtaatgaaaatgagggctcctaaagaaggttcttgtgatcctattgcacctcttgagctaccacattcattgcatgcttttcgcggtgcgcctcaagctgatactttgaacaaggaaggctatcatgtatttcggggaggattttggaactacttcagcataggaatggatgctcaagtttcacatgcatttcacagcaagaggaagctccatccagaaaagttcaaacaccagttggttaatcagaggaattatgcaaagcttgtctgtaaacaaggatggttttgcacttctttcatgcacccatcgtcaagaaacattgctcagttagcaaatgtcaaaataatgaaaagatcaggtgaatggatagacctacacattcctagcagcattaggtctattgtctgccttaatttgcccagcttttcgggtggacttaatccttggggaaaacctaacaagcagaagctgcatgagagggatcttactcctccatatgttgatgatggtctacttgaagttgttggttttcgcgatgcttggcatggacttattttgtttactccaggaaggcacggaacacgtcttgcacaggcgaatagaatacgatttgagtttcacaagggtgctagtgagcatacatttatgagaatgggatgggaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="29758" stop="26544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29458" g_stop="29375" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29374" i_stop="29207" i_length="168">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29206" g_stop="29083" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="208" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29082" i_stop="28962" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28961" g_stop="28913" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="257" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28912" i_stop="28525" i_length="388">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28524" g_stop="28442" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="340" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28441" i_stop="28279" i_length="163">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28278" g_stop="28211" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="408" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28210" i_stop="27456" i_length="755">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27455" g_stop="27381" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="483" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27380" i_stop="27303" i_length="78">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.760" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27302" g_stop="27215" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="571" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27214" i_stop="27139" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27138" g_stop="27022" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="688" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="27021" i_stop="26917" i_length="105">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="26916" g_stop="26848" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="757" r_length="69" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U345712" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29458" e_stop="29375"/>
          <exon e_start="29206" e_stop="29083"/>
          <exon e_start="28961" e_stop="28913"/>
          <exon e_start="28524" e_stop="28442"/>
          <exon e_start="28278" e_stop="28211"/>
          <exon e_start="27455" e_stop="27381"/>
          <exon e_start="27302" e_stop="27215"/>
          <exon e_start="27138" e_stop="27022"/>
          <exon e_start="26916" e_stop="26848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAATCCTGGTATTAACTGCCAGTCCGTGAAGTCGTTCCTGAATCAAGTGAAAAATGGAAAAGAAATGAAAGTTGACAGGTAACTTGGTTTTACTTGCATAGTGAATTTGAAGGTTCCCTGACTCTTTTGCTACCTGTGTCTGGCTGGAATTTCATGAATCTCTACAATGCACGCACAAGTTTTTTTTCTTCTTAATATAGATGTTGATAAATCCGAAATGACATGATGGTTATTGTGTTTCATCAGCTGGCATATTGTAATGAAAATGAGGGCTCCTAAAGAAGGTTCTTGTGATCCTATTGCACCTCTTGAGCTACCACATTCATTGCATGCTTTTCGCGGTGCGCCTCAAGCTGATACTTTGAACAAGGTATCAAATTCTTCAATCCATTTTCTTATGTAGTGTATTATGCAGCTAGAAATGTATACCAGCAAAGAGAATCAAATTCTTCAGTCAATTTTCTTATACGGTGAATTCTGCTTATTTTCAGGAAGGCTATCATGTATTTCGGGGAGGATTTTGGAACTACTTCAGCATAGGTAAGAATTGTAATCTATCTTTTGAATTACATCTTCAACTGATCTTTACAATATTGTATTACTCCATTTTGGCATTTTCTAGTCCAGAAGAAACATTTTCAGTTGGTATACATATAGCCTGTTTTAGCAAACAGTTATGAGACTAGATTGGTTTTATGACACCATTGTATATGTTGGTGAAAGCTAAAACCAACAGTATATCTATACTAAAAGCTGTATTTCAGAGATCTACATTTCGTAGAAACACTTCATATTGAATCTGTTCAGCAGTGAGATCTTTCCTAGTGTGGCCGATTTGATCAAGAGCTTAATTCTTGCGTTATCTGGTGTAATATTAATATTTTCATTCCTGAGTTGAAGTTTTTCACTTTTTTCCGTCAACTTGTAGGAATGGATGCTCAAGTTTCACATGCATTTCACAGCAAGAGGAAGCTCCATCCAGAAAAGTTCAAACACCAGTTGGTTAATCAGGTCCTTATTGTCATTTGGAATATGGTGTTATAATGTTATATTTTCCTACATGTTGTTTAATCTTTATGTACTTCAACTCTTGATCCTTTTGTCTTTTCATTTGTTCAATTACTTTTATATGAAATATCTGATGGTCTTTTCTCTTTGTTCACCATTTGTTTAGAGGAATTATGCAAAGCTTGTCTGTAAACAAGGATGGTTTTGCACTTCTTTCATGCACCCATCGTCAAGGTTAGTTTTATAGTCAAGGTTAACCTATATGTATATCGTTGCTCGTATCATTTATTTCCTTCATTATTTGAACACATACCATTACCTCTCTCCCTGCCCATACGACACCATGGTTTGGGAAATAACTTTTAGCAATTGTGAACTTCGAGAACCCTCCTTTAGATGAAAACCTTGTATTGATACTGATTCTAGTACAGTATCAGTAATTTTCTCTTGTTCTTCATAGTGAATAGTGGTTGTTGTGTAGCGCCAACATTTTGCCTATGGCAAGACCTATGAGGGGGATGAAGTGGCTTGGGTCAGAGTCAACGATAGAACATGGCACTTGCTTAATTGGTTCTCTTAGTTTAGAAATAAAGTTGTGCCTTTGCTATTAGCTATAACTTTTTGCATAATGGTAGCACTTGATCCTAACAAGTAGTATCAGAGTCAAAATCACAAATTCAATTTCCAAGAGCAACATGTTGCATGAGGCAGGTGTTGAGAGAGGGGGATTGTTAATGCCAACATTCTACCTATGGCAAGACCCCATGAGAGGGGTTGGAGTGGCACGGGTCATAATCATAAATCATAAATCAAACAGCGCTTGGTTGGTGAGATTAGTTAAGAATAAAGTTGTGCCCTTACTATCAACTATGTCTGTTCTGTGTTACATTTAGTATGTGAAGATAATGATGACTGTAACATTGCCTCTCTTAATAACTACAGTATCATTTCAAACTAAACATATTGATCGAATCTGTTTCTGCGCGCAGAAACATTGCTCAGTTAGCAAATGTCAAAATAATGAAAAGATCAGGTGAATGGATAGACCTACACATTCCTAGCAGGTAGTAATATGGTTCTCTATTACCTACTGCATTACTTTCGCGCCTTTTTCTTAACCATATCTGTGGTTCGATATGCAGCATTAGGTCTATTGTCTGCCTTAATTTGCCCAGCTTTTCGGGTGGACTTAATCCTTGGGGAAAACCTAACAAGCAGAAGCTGCATGAGGTTAGTTTCGATTTTCTTTAACTATCCTCTTCCAAAATGTGTCAATAATGTAAAACATTTTCTGTACTTTAAACAGAGGGATCTTACTCCTCCATATGTTGATGATGGTCTACTTGAAGTTGTTGGTTTTCGCGATGCTTGGCATGGACTTATTTTGTTTACTCCAGGAGGGCACGGAACACGTCTTGCACAGGTTGTTAATTCAATATAAACATGTTTCATTGGTTAATATGTTCTTACTGATCGATCGTTAGATCATAGATGTACAATGTTCATCTCTATTCTACTGTTTTTTTAGGCGAATAGAATACGATTTGAGTTTCACAAGGGTGCTAGTGAGCATACATTTATGAGAATGGATGGGGAA</genome_strand>
        <mrna_strand>AAAAAAGAATCCTGGTATTAACTGCCAGTCCGTGAAGTCGTTCCTGAATCAAGTGAAAAATGGAAAAGAAATGAAAGTTGACAG........................................................................................................................................................................CTGGCATATTGTAATGAAAATGAGGGCTCCTAAAGAAGGTTCTTGTGATCCTATTGCACCTCTTGAGCTACCACATTCATTGCATGCTTTTCGCGGTGCGCCTCAAGCTGATACTTTGAACAAG.........................................................................................................................GAAGGCTATCATGTATTTCGGGGAGGATTTTGGAACTACTTCAGCATAG....................................................................................................................................................................................................................................................................................................................................................................................................GAATGGATGCTCAAGTTTCACATGCATTTCACAGCAAGAGGAAGCTCCATCCAGAAAAGTTCAAACACCAGTTGGTTAATCAG...................................................................................................................................................................AGGAATTATGCAAAGCTTGTCTGTAAACAAGGATGGTTTTGCACTTCTTTCATGCACCCATCGTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATTGCTCAGTTAGCAAATGTCAAAATAATGAAAAGATCAGGTGAATGGATAGACCTACACATTCCTAGCAG..............................................................................CATTAGGTCTATTGTCTGCCTTAATTTGCCCAGCTTTTCGGGTGGACTTAATCCTTGGGGAAAACCTAACAAGCAGAAGCTGCATGAG............................................................................AGGGATCTTACTCCTCCATATGTTGATGATGGTCTACTTGAAGTTGTTGGTTTTCGCGATGCTTGGCATGGACTTATTTTGTTTACTCCAGGAAGGCACGGAACACGTCTTGCACAG.........................................................................................................GCGAATAGAATACGATTTGAGTTTCACAAGGGTGCTAGTGAGCATACATTTATGAGAATGGGATGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322500" ref_strand="+" ref_description="SGN-U322500        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT4G27250.1 | Symbol: None | dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family, similar to dihydrokaempferol 4-reductase, Ipomoea purpurea (GI:4239849), Medicago sativa, PIR2:S61416 | chr4:13642778-13644431 REVERSE | Aliases: M4I22.60, M4I22_60 (evalue: 8e-15, score=75.9) genbank/nr: putative(evalue: 2e-18, score=93.6)">
      <seq>attagctcatatagaggatatatgtcgcgcccacatattcctcatggagaatattaaagcacaaggacgatatatatgttgtgctcagagttgggcattgtctgaagttatcgatcaccttaaaaacgagtatccttaccttgatgcagagaggcgcggaggacatgattcagtgatcccctcggagatttcatcaaagaaattgagaggactcggattttctttcaagtatgaaatcaacgatatcataagagatacaattactagttgtatacatcatggattcttagcctcaattcaaaagtaagaattgcaaattacatgtaccaaaaccttaactcttactttgatgtatcagtatactccttttaatatcaatgaagtagaaaatcttattattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37994" stop="36917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37694" g_stop="37542" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37541" i_stop="37466" i_length="76">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37465" g_stop="37204" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="415" r_length="262" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U322500" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37694" e_stop="37542"/>
          <exon e_start="37465" e_stop="37204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAGGTTATTCCATTCGATTTCTACTGCAATAATTAAATCCACATGAAGTTTATATATAGTCTAATTATCTGTGTTACAGGCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTTTTTAAGATCTTAT</genome_strand>
        <mrna_strand>ATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAG............................................................................GCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322501" ref_strand="+" ref_description="SGN-U322501        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G27250.1 | Symbol: None | dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family, similar to dihydrokaempferol 4-reductase, Ipomoea purpurea (GI:4239849), Medicago sativa, PIR2:S61416 | chr4:13642778-13644431 REVERSE | Aliases: M4I22.60, M4I22_60 (evalue: 6e-61, score=231) genbank/nr: gi|30687527|ref|NP_194455.2| dihydroflavonol 4-reductase (dihydrokaempferol 4-reductase) family [Arabidopsis thaliana] gi|23296465|gb|AAN13064.1| unknown protein [Arabidopsis thaliana](evalue: 4e-59, score=231)">
      <seq>gagaactagtctgatagagccagccatcgaagggaccttgaatgttctgaaatcgtgcttgaaatgcaattctgttaaaaaagttgtattcacatcatcaatcagtaccatcacagccagagacaactttgggagatggagaccttttgtcgatgaatcttgcaaagtacctatccaacatgttaagcacacaaaaccaactggttgggtttatgtactactaaaggttttgacagaggatgcagcatttcagtttgcaaaagaaaatggcattaatttggtttcaacgataacaccaactatagctggtccattcctcactcctacagttccatcaagcattcaagttctcttgtcaccaataacagatgatcctgatatgttagctatactcaccgctgtaaacacaagaatgggatcaatagcattagctcatatagaggatatatgtcgcgcccacatattcctcatggagaatattaaagcacaaggacgatatatatgttgtgctcagagttgggcattgtctgaagttatcgatcaccttaaaaacgagtatccttaccttgatgcagagaggttattccattcgatttctactgcaataattaaatccacatgaagtttatatatagtctaattatctgtgttacaggcgcggaggacatgattcagtgatcccctcggagatttcatcaaagaaattgagaggactcggattttctttcaagtatgaaatcaacgatatcataagagatacaattactagttgtatacatcatggattcttagcctcaattcaaaagtaagaattgcaaattacatgtaccaaaaccttaactcttactttgatgtatcagtatacctccttttaatantcaatgaagtagaaaatcttattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="38576" stop="36921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38284" g_stop="38076" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38075" i_stop="37980" i_length="96">
            <donor d_prob="0.759" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37979" g_stop="37820" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="368" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37819" i_stop="37753" i_length="67">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37752" g_stop="37212" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="911" r_length="543" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U322501" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38284" e_stop="38076"/>
          <exon e_start="37979" e_stop="37820"/>
          <exon e_start="37752" e_stop="37212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGAAAATATGATAGAGCCAGCCATCGAAGGGACCTTGAATGTTCTGAAATCGTGCTTGAAATCCAATTCTGTTAAAAAAGTTGTATTCACATCATCAATCAGTACCATCACAGCCAGAGACAACTTTGGGAGATGGAGACCTTTTGTCGATGAATCTTGCAAAGTACCTATCCAACATGTTAAGCACACAAAACCAACTGGTTGGGTAATTCTCTATCGGACCCTTAAAAAGTAATGCATTATTTGAGCGTATCAAAAGTAGTACTTTCAGTTTTTACATTATTTATCGATTATTATACAGGTTTATGTACTACTAAAGGTTTTGACAGAGGATGCAGCATTTCAGTTTGCAAAAGAAAATGGCATTAATTTGGTTTCAACGATAACACCAACTATAGCTGGTCCATTCCTCACTCCTACAGTTCCATCAAGCATTCAAGTTCTCTTGTCACCAATAACAGGTTTGACATAACTCAGTAACTAACGCACCTACAATACTTGTTAACACGTCTTTTAATTTTTTTATAGATGATCCTGATATGTTAGCTATACTCACCGCTGTAAACACAAGAATGGGATCAATAGCATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAGGTTATTCCATTCGATTTCTACTGCAATAATTAAATCCACATGAAGTTTATATATAGTCTAATTATCTGTGTTACAGGCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATA-CTCCTTTTAATA-TCAATGAAGTAGAAAATCTTATTATTTTTTTAA</genome_strand>
        <mrna_strand>GAGAA-CTAGTCTGATAGAGCCAGCCATCGAAGGGACCTTGAATGTTCTGAAATCGTGCTTGAAATGCAATTCTGTTAAAAAAGTTGTATTCACATCATCAATCAGTACCATCACAGCCAGAGACAACTTTGGGAGATGGAGACCTTTTGTCGATGAATCTTGCAAAGTACCTATCCAACATGTTAAGCACACAAAACCAACTGGTTGG................................................................................................GTTTATGTACTACTAAAGGTTTTGACAGAGGATGCAGCATTTCAGTTTGCAAAAGAAAATGGCATTAATTTGGTTTCAACGATAACACCAACTATAGCTGGTCCATTCCTCACTCCTACAGTTCCATCAAGCATTCAAGTTCTCTTGTCACCAATAACAG...................................................................ATGATCCTGATATGTTAGCTATACTCACCGCTGTAAACACAAGAATGGGATCAATAGCATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAGGTTATTCCATTCGATTTCTACTGCAATAATTAAATCCACATGAAGTTTATATATAGTCTAATTATCTGTGTTACAGGCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACCTCCTTTTAATANTCAATGAAGTAGAAAATCTTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316085" ref_strand="+" ref_description="SGN-U316085        Tomato 200607 #1 [30 ESTs aligned] arabidopsis/peptide: AT5G48150.1 | Symbol: None | phytochrome A signal transduction 1 (PAT1) | chr5:19539485-19541839 REVERSE | Aliases: MIF21.4, MIF21_4 (evalue: 8e-132, score=468) genbank/nr: gi|50509234|dbj|BAD30510.1| putative chitin-inducible gibberellin-responsive protein [Oryza sativa (japonica cultivar-group)] >gi|73620050|sp|Q69VG1|CIGR1_ORYSA Chitin-inducible gibberellin-responsive protein 1 (evalue: 2e-156, score=549)">
      <seq>atttttctccaaattttatcaatctacaagttagattcctccttctgcagattatatcaggtggatttcggtgaagcagatattaagtgttagtgagaaagagtttgcgcatagagcagctaatgacagccgtatagtatggactcgcaccatttggttgcttatggtgtgaccggtagtgatttgtcgtattcttcatgccctactgttagtcctctagagaatagaccatttggtacatcgaaatttgattcaggaaattcgccacttgtgaactattttaactctgagaccttcaacacagtaagtgattaccaggagcagcccagctgtacagagaatctttcaggtgctagttcttcaagtggttcctcactggattataaccaatatttccatcgaccaagcccctcggaagatcatcttccagaagctccttacagtcggaacatgaaacatactctgctgcagttggagtctgctttaatggggccagacaaagaggcaatgaaatccagcccttatcttggtgaaaatatgggggcacaaacatcaggtcagaggtataaagcgtggaacaaggaagcccaagttgtgcgtcatcaacaatcagtagtttcaatccttaatggaattcaaagtgataagcgagacaatgtaatggaggacttgcccttgcagggtgttccgtctagcaatctgaagcagctgcttatagcatgcgccagagctcttgctgaaaacaagctagatgattttgaaatactggttgctaaggcaaggagtgttgtgtccgttactggagatcccatccagcgtcttggtgcttacattgtagaaggcctcgtagcaagaaaggagttatctggaactaccatatacaggagtttaaagtgtaaggagccggctggtaaggacttgttctcctacatgtatatcctctatgaaatatgtccttacctaaagttcggctacatggctgcaaatggtgccatagtagaagcatgcagaaatgaagatcgcatccacattatagacttccaaattgcacaggggacccaatggatgactctcttacaagctcttgcagcacgacccggtggtgccccctacgtacgtattacaggaattgatgatccagtttcacagtacgctcggggagatggattggctgcagttgccagacggctatcagcaatttctgaggaattcaacattgctgttgagtttcatgcagtgccagtttttgctccggaaatcacttgggatatgcttgatgtaaggcctggtgaggctctggctgtaaactttcctttgcaacttcaccacacccctgatgagagcgttgacgtgaataaccctagagatggtctcattaggatgataaagtcgcttagccccaagatagtcactttggtggagcaagaatcaaacacgaacacagctccatttctccctaggtttgtagaagctctagattactaccatgcaatgtttgagtccatagatgtgaccctactaagggacatgaaggagcggatcaatgtggaacagcactgtttggctagggatatagtgaatgtcatagcatgtgagggcaaggaaagagtagaacgtcacgagctattggggaagtggaaatccaggttcatgatggcaggttttcagcaatatcctttgagctcttatgtgaattcagtgattaaggacctcatgaagcgttactcggagcattatacactggtggagaaagacggagctatgctgatatgctgtgggggtggaaggagcggaatctagtctctgcgtctgcttggttttaacgaattacttcagaaacgaagctgtagttcattatgtggaaacagatggttagccttcttttttattacttatccagacaataggattgatcaagtaattatactcgtgttatatagtttcaattttctgaaattttagtatataaaaatgctttatgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41212" stop="44404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41512" g_stop="41571" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41572" i_stop="42223" i_length="652">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42224" g_stop="44099" g_length="1876"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="1961" r_length="1901" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1985" polyA_stop="1995"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U316085" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>1936</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41512" e_stop="41571"/>
          <exon e_start="42224" e_stop="44099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTCCAAATTTTATCAATCTACAAGTTAGATTCCTCCTTCTGCAGATTATATCAGGTATTTTATTTTTTTCAGATTTTGATATCTTCTTTGTTTTCGAACAGTTGATGAAACCAGAAATTGAAAGATGATTTGGTTTTTGTGATTCATTTTTCATATGTGAACTAGCTTTATAATTGAATAGACTTATATAGCAATTTTTGGTATTGTATCTGTGAACTAGCTTGGTTAATTTGGTGAATCTACTGTAAAAAATTTTTTTAGGGATTTTTGTAAGAAAAAGGGAATGGAGTTACGAATATTCAGGAGATTCTATTTGAAAAGCTTGTTTAGAATGGAAACCGAAAGGAAATGGCACTTTTTCATTAGTATTAGTACTATTTTTGAGGAAAATTGAGGGCATGGGAGGGGAGTCAAAGTCACCGACAGGGTGAAAATTAAGTTAATCATAACTAAGCTATTAAGATTTTGGAGGAAATGGTCATCATGTTTTCACAGGCAATTAACTACCTATCTGTGGTGCAGGGTTTTCCTTTAAAAATCATAAAATGATTCTAATCTGGCAATTATTTGCAGTAAGATTAGAACTAATTAGCTTCGTTCTGTTCCTTGTTTTTGTATATCCATTAACTCAAAAGTAGGAAGCTTGATTGTCTTATGATAGAGGGTTGAGTAATTGATGTGGGTTGGATCTCTTTATTTTTCACAGGTGGATTTCGGTGAAGCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGAAGGCCTCGTAGCAAGAAAGGAGTTATCTGGAACTACCATATACAGGAGTTTAAAGTGTAAGGAGCCGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGC-----TG-T-T-GGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACG----AGTT---------A-C--T-GTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTTTATTACTTAACCAGACAATAGGATTGATCAAGTAATTATACTCATGTTATGTAGTTTCAATTTTCTGAAATTTTA</genome_strand>
        <mrna_strand>ATTTTTCTCCAAATTTTATCAATCTACAAGTTAGATTCCTCCTTCTGCAGATTATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTTCGGTGAAGCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGAAGGCCTCGTAGCAAGAAAGGAGTTATCTGGAACTACCATATACAGGAGTTTAAAGTGTAAGGAGCCGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGCTGATATGCTGTGGGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGAATTACTTCAGAAACGAAGCTGTAGTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTTTATTACTTATCCAGACAATAGGATTGATCAAGTAATTATACTCGTGTTATATAGTTTCAATTTTCTGAAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313009" ref_strand="+" ref_description="SGN-U313009        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>agctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctcattctgttttctttttcttctctgttcaagtgaaacataatgacagctcaatctcattatgtttcccttcaattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45723" stop="3964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45423" g_stop="45130" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45129" i_stop="44665" i_length="465">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44664" g_stop="44637" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="322" r_length="28" r_score="0.643"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44636" i_stop="43273" i_length="1364">
            <donor d_prob="0.415" d_score="0.00"/>
            <acceptor a_prob="0.623" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43272" g_stop="43264" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="331" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U313009" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45423" e_stop="45130"/>
          <exon e_start="44664" e_stop="44637"/>
          <exon e_start="43272" e_stop="43264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTCATTCTGTTTTCTTTTTCTTCTCTGTTCAAGTGAAACATAATGACAGCTCAATCTCATTATGTTTCCCTTCAATTTTAAGTTATAGTTTCTCTTATTATATACATACATGGACATCATAATTATGTATTTAGCATAATTTAGATCTCTGTAATTATTCTATTATTTAAGTCTTAGTTATTGTGTAGAGTTTATACATTTGTGCCGTCTTTTGTTGCAAAAAAGAACATTTGTTGTTCAACTCAACTTTTGCTCAATTTTAATTGATAGTATTAATGAACTTTACGAAAACGACTTTTAAAACCTCTAGAACGTTAACACGTATTAGCCTGATTAGTTTACCTAAAAACTAGGAACATAATAGCCTGATTAGTTGTCAAAATTGACACATATTAGTATCTGTTGGGAATTTTCGAGAATATTATTGATATATTTAGCTTGTCAAAATATAAAATAGGTATTTGTTGTGATTTTTAACTAAATGATTAATTTATTCATCACCCAATTTAATTAATCAAAATTAATTTAGGTCATTCATTGAAAATTTGACTTAAAGAGAATACAAAATAAAGATACAATGGTAAATGTATATAGTTTCTTGACATATAAATAGAAACAAAATCTTATTGTTCTCATGTAATTATAAGATAAAAGATAAAATAGAATTAGATAAGAAAGACAAAATGAGAATAAAATATTAAAAAATCAATATAATAAAATTTGAATAACAATTAAAACATATATTATATATGAACTAACCATACAATATAACTTTCTAATAATCATCATTCAAACAAGGTGTTAATATTTCTACATATGTATATATAAAAAAACCCACCAAATTTAATGTGTTCTCCTCTAATAGATCTGTGATAGTGTTTCAGTATCTAAACTCCCTATATCCATAATGCCTTACAAGCAGCGGCAGCAGGCAGGATTCCGGTAGCACCGAGAGGTCTCCGGGCAGTTTTCTATTCATTTTCTGCTAATGTACCTTTGTATCAACCGAGGACCGGATATAATCTCCAAAGTTGCTCAACAAATCATCAAGGACGAGATATAATTGTTTATAAGTTTTAACAAATAATATCAAACGATAACTTGAAAAATAAACAACTAAAATTTCAGAAAATTGAAACTACATAACATGAGTATAATTACTTGATCAATCCTATTGTCTGGTTAAGTAATAAAAAAGAAGGCTAACCATCTGTTTCCACATAATGAACAGTAACTCGTTAAAACCAAGCAGACGCAGAGACTAGATTCCGCTCCTTCCACCCCAACAGCATAGCTCCGTCTTTCTCCACCAGTGTATAATGCTCCGAGTAACGCTTCATGAGGTCCTTAATCACTGAATTCACATAAGAGCTCAAAGGATATTGCTGAAAACCTGCCATCATGAACCTGGATTTCCACTTCCCCAATAGCTCGTGACGTTCTACTCTTTCCTTGCCCTCACATGCTATGACATTCACTATATCCCTAGCCAAACAGTGCTGTTCCACATTGATCCGCTCCTTCATGTCCCTTAGTAGGGTCACATCTATGGACTCAAACATTGCATGGTAGTAATCTAGAGCTTCTACAAACCTAGGGAGAAATGGAGCTGTGTTCGTGTTTGATTCTTGCTCCACCAAAGTGACTATCTTGGGGCTAAGCGACTTTATCATCCTAATGAGACCATCTCTAGGGTTATTCACGTCAACGCTCTCATCAGGGGTGTGGTGAAGTTGCAAAGGAAAGTTTACAGCCAGAGCCTCACCAGGCCTTACATCAAGCATATCCCAAGTGATTTCCGGAGCAAAAACTGGCACTGCATGAAACTCAACAGCAATGTTGAATTCCTCAGAAATTGCTGATAGCCGTCTGGCAACTGCAGCCAATCCATCTCCCCGAGCGTACTGTGAAACTGGATCATCAATTCCTGTAATACGTACGTAGGGGGCACCA</genome_strand>
        <mrna_strand>AGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTCATTCTGTTTTCTTTTTCTTCTCTGTTCAAGTGAAACATAATGACAGCTCAATCTCATTATGTTTCCCTTCAATTTTAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAACTCGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316086" ref_strand="+" ref_description="SGN-U316086        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G48150.1 | Symbol: None | phytochrome A signal transduction 1 (PAT1) | chr5:19539485-19541839 REVERSE | Aliases: MIF21.4, MIF21_4 (evalue: 3e-38, score=154) genbank/nr: gi|50509234|dbj|BAD30510.1| putative chitin-inducible gibberellin-responsive protein [Oryza sativa (japonica cultivar-group)] >gi|73620050|sp|Q69VG1|CIGR1_ORYSA Chitin-inducible gibberellin-responsive protein 1 (evalue: 7e-40, score=166)">
      <seq>ttgagtccatagatgtgaccctactaagggacatgaaggagcggatcaatgtggaacagcactgtttggctagggatatagtgaatgtcatagcatgtgagggcaaggaaagagtagaacgtcacgagctattggggaagtggaaatccaggttcatgatggcaggttttcagcaatatcctttgagctcttatgtgaattcagtgattaaggacctcatgaagcgttactcggagcattatacactggtggagaaaaacggagctatgctgttggggtggaaggagcggaatctagtctctgcgtctgcttggttttaacgagttactgttcattatgtggaaacagatggttagccttcttttttattacttaaccagacaataggattgatcaagtaattatactcatgttatgtagtttcaattttttgaaattttagttgtttatttttcaagttatcgtttgatattatttgttaaaacttataaacaattatatttcgtccttgatgatttgttgggccactttggggattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43359" stop="62264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43659" g_stop="44199" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44200" i_stop="45192" i_length="993">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.882" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45193" g_stop="45240" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="589" r_length="48" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U316086" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43659" e_stop="44199"/>
          <exon e_start="45193" e_stop="45240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGCTGTTGGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGAGTTACTGTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTTTATTACTTAACCAGACAATAGGATTGATCAAGTAATTATACTCATGTTATGTAGTTTCAATTTTCTGAAATTTTAGTTGTTTATTTTTCAAGTTATCGTTTGATATTATTTGTTAAAACTTATAAACAATTATATCTCGTCCTTGATGATTTGTTGAGCAACTTTGGAGATTATATCCGGTCCTCGGTTGATACAAAGGTACATTAGCAGAAAATGAATAGAAAACTGCCCGGAGACCTCTCGGTGCTACCGGAATCCTGCCTGCTGCCGCTGCTTGTAAGGCATTATGGATATAGGGAGTTTAGATACTGAAACACTATCACAGATCTATTAGAGGAGAACACATTAAATTTGGTGGGTTTTTTTATATATACATATGTAGAAATATTAACACCTTGTTTGAATGATGATTATTAGAAAGTTATATTGTATGGTTAGTTCATATATAATATATGTTTTAATTGTTATTCAAATTTTATTATATTGATTTTTTAATATTTTATTCTCATTTTGTCTTTCTTATCTAATTCTATTTTATCTTTTATCTTATAATTACATGAGAACAATAAGATTTTGTTTCTATTTATATGTCAAGAAACTATATACATTTACCATTGTATCTTTATTTTGTATTCTCTTTAAGTCAAATTTTCAATGAATGACCTAAATTAATTTTGATTAATTAAATTGGGTGATGAATAAATTAATCATTTAGTTAAAAATCACAACAAATACCTATTTTATATTTTGACAAGCTAAATATATCAATAATATTCTCGAAAATTCCCAACAGATACTAATATGTGTCAATTTTGACAACTAATCAGGCTATTATGTTCCTAGTTTTTAGGTAAACTAATCAGGCTAATACGTGTTAACGTTCTAGAGGTTTTAAAAGTCGTTTTCGTAAAGTTCATTAATACTATCAATTAAAATTGAGCAAAAGTTGAGTTGAACAACAAATGTTCTTTTTTGCAACAAAAGACGGCACAAATGTATAAACTCTACACAATAACTAAGACTTAAATAATAGAATAATTACAGAGATCTAAATTATGCTAAATACATAATTATGATGTCCATGTATGTATATAATAAGAGAAACTATAACTTAAAATTGAAGGGAAACATAATGAGATTGAGCTGTCATTATGTTTCACTTGAACAGAGAAGAAAAAGAAAACAGAATGAGCCAAGCTAAACACATTTATAAATG</genome_strand>
        <mrna_strand>TTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAAACGGAGCTATGCTGTTGGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGAGTTACTGTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTTTATTACTTAACCAGACAATAGGATTGATCAAGTAATTATACTCATGTTATGTAGTTTCAATTTTTTGAAATTTTAGTTGTTTATTTTTCAAGTTATCGTTTGATATTATTTGTTAAAACTTATAAACAATTATATTTCGTCCTTGATGATTTGTTGGGCCACTTTGGGGATTTTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313007" ref_strand="+" ref_description="SGN-U313007        Tomato 200607 #1 [70 ESTs aligned] arabidopsis/peptide: AT4G36130.1 | Symbol: None | 60S ribosomal protein L8 (RPL8C), ribosomal protein L8, cytosolic, tomato, PIR1:R5TOL8 | chr4:17097568-17098882 FORWARD | Aliases: F23E13.20 (evalue: 9e-133, score=469) genbank/nr: ribosomal(evalue: 9e-137, score=489)">
      <seq>gttacggccctcctccctctaaaaaccctaactccctttcttctttattccatttcttcctctattcccaaaaacttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47286" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46986" g_stop="46453" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45214" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="1050" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1051" polyA_stop="1084"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U313007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1050</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46986" e_stop="46453"/>
          <exon e_start="45729" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACGGCCCTCCTCCCTCTAAAAACCCTAACTCCCTTTCTTCTTTATTCCATTTCTTCCTCTATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>GTTACGGCCCTCCTCCCTCTAAAAACCCTAACTCCCTTTCTTCTTTATTCCATTTCTTCCTCTATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313602" ref_strand="+" ref_description="SGN-U313602        Tomato 200607 #1 [74 ESTs aligned] arabidopsis/peptide: | Symbol: None | pectinacetylesterase, putative, similar to pectinacetylesterase precursor GI:1431629 from (Vigna radiata) | chr4:10582032-10585769 REVERSE | Aliases: T5K18.190, T5K18_190(evalue: 1e-71, score=267) genbank/nr: gi|50928497|ref|XP_473776.1| OSJNBa0041A02.14 [Oryza sativa (japonica cultivar-group)] >gi|38344147|emb|CAD41867.2| OSJNBa0041A02.14 [Oryza sativa (japonica cultivar-group)] (evalue: 2e-72, score=276)">
      <seq>caacatatatattttttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagattttcaggagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttcaaaaatgaaagcagaattgtgcctctacgcagaaaacatccaacaatatactaagacaccattttttctttacatgtcagcatttgataacatcgagacacaatatactttaggagacgagaaatacaaagccgttgatgaggggttaggcccagaaagtatgaatgcatccctacgagaaatgaggtctgttttcttaaacgcaatacccaaaagagataacccgaaacacagaggagcttttatagacgcagtgcatcatcatactagcctttttcgtaggtggtctcttgaagtggcccttgaaatcgataatgtgttggccccaatagcatttgctgattggtattttgatcggaaatactattatttggtagatgaaaaacataccatgccaatcaaaaatacgatcaaaaacacaacttattatcatgactagactaatcttcatttattccaagaaaagtatttgattgttagacaatcaaattctctattgtatcatgtaaaagattttccctatgtatcaaatccggtgacaaagaggtccctttgacaaaattaataaaaatttctattgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52464" stop="48430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52164" g_stop="52142" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="175" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="258" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="385" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="477" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="564" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="689" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="750" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="49807" g_stop="49754" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="804" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="49674" g_stop="49597" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="882" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="49596" i_stop="49508" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="49507" g_stop="49426" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="883" r_stop="964" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="49425" i_stop="49233" i_length="193">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="49232" g_stop="49093" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1104" r_length="140" r_score="0.957"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="49092" i_stop="49006" i_length="87">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="49005" g_stop="48730" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1105" r_stop="1367" r_length="263" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U313602" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>1380</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52164" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49754"/>
          <exon e_start="49674" e_stop="49597"/>
          <exon e_start="49507" e_stop="49426"/>
          <exon e_start="49232" e_stop="49093"/>
          <exon e_start="49005" e_stop="48730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATATATATTTTTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAGGTTGGTATAATATTAGTAACAAAAATTATTTAATTAAATTGATGTCTTCTCAATATTATTATTAATCAACATTTATAATACTTTTGCAGACACAATATACTTTAGGAGACGAGAAATATAAAGCCGTTGATGAGGGGTTAGGCCCAGAAAGTATGAATGCATCCCTACGAGGTTAGTACAAATACTTGATTTAATGACAATTAACTAGTACTGATAAAAATTTTTATCAAAAAATATTTTTGTTATAGTGTATCATAATCAAATATAGATAAAATGATGAAAAAAAAGTGAATAATTTTTTTTGTTAGGTACATAACGTGAGTTATAATTCTAATGTTTTTGAATAATTTGTTGTAAAATTCAGAAATAAGGTCTGTTTTCTTAAACGCAATACCCAAAAGAGACAACCCTAAACACAGAGGAGCTTTTATAGACGCAATGCATCATCATACTAGCCTTTTTCGCCGGTGGTCTCTTGAAGTGGCCCTTGAAATCGATAATGTGGTAAGATATTATTTATTTTTGTTTTTATAACATATTTTTTTTAAAAAATGATGTTTGCTAACTATATATTGTTTTTGTTTTGTGCAGTTGGCCCCAATAGCATTTGCTGATTGGTATTTTGATCGGAAATACTATTATTTGGTAGATGAAAAACATACCATGCCAATCAAAAATACGATCAAAAACACAACTTATTATTATCATGAATAGACTAATCTTCATTTATTCCAAGAAAAGTTATCAAAAATATTTGATTGTTAGACAATCAAATTCTCTATTGTATCATGTAAAAGATTTTCCCTATGTATCCAATCCGGTGACAAAGAGGTCCCTTTGACAAAATTAATAAAAATTTCTATTGTG</genome_strand>
        <mrna_strand>CAACATATATATTTTTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG...............................................................................TGCCTCTACGCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTTACATGTCAGCATTTGATAACATCGAG.........................................................................................ACACAATATACTTTAGGAGACGAGAAATACAAAGCCGTTGATGAGGGGTTAGGCCCAGAAAGTATGAATGCATCCCTACGAG.................................................................................................................................................................................................AAATGAGGTCTGTTTTCTTAAACGCAATACCCAAAAGAGATAACCCGAAACACAGAGGAGCTTTTATAGACGCAGTGCATCATCATACTAGCCTTTTTCGTAGGTGGTCTCTTGAAGTGGCCCTTGAAATCGATAATGTG.......................................................................................TTGGCCCCAATAGCATTTGCTGATTGGTATTTTGATCGGAAATACTATTATTTGGTAGATGAAAAACATACCATGCCAATCAAAAATACGATCAAAAACACAAC---TTATTATCATGACTAGACTAATCTTCATTTATTCCAAGAAAAG----------TATTTGATTGTTAGACAATCAAATTCTCTATTGTATCATGTAAAAGATTTTCCCTATGTATCAAATCCGGTGACAAAGAGGTCCCTTTGACAAAATTAATAAAAATTTCTATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325385" ref_strand="+" ref_description="SGN-U325385        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT5G54510.1 | Symbol: GH3.6 | encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. | chr5:22148319-22150904 REVERSE | Aliases: F24B18.13, F24B18_13, GH3.6 (evalue: 5e-101, score=339) genbank/nr: gi|15239653|ref|NP_200262.1| auxin-responsive-related protein [Arabidopsis thaliana] gi|8885594|dbj|BAA97524.1| auxin-responsive-like protein [Arabidopsis thaliana] gi|11041726|dbj|BAB17304.1| auxin-responsive GH3 homologue [Arabidopsis thaliana](evalue: 3e-99, score=339)">
      <seq>tccctctgataacaactcttggctaaagccatcctatactctttttctctttagtcattacattattaacaatgcctgaggcaccaaagaattcccctattgttgctgaagaaaacaagaaaactcttcatttcattgaagatgttaccaccaaagctgatgagatccaaaagagagtccttgctgaaatactttgtcgaaatgccaacgttgagtacttgaagcgctatgctgatcttaatggcaatactgatagagagactttcaaaaaagttatgcctgttatcagttatgaagatattcagcatgatatcaaccgcattgcgagtggtgatacatctcctatcttgtgctcccaacctgtctctgaattcttgacaagttctggtacgtcaggaggggagaggaaattgatgccaacaacagaggaagagcttggaagacgatcgttgctttatagtcttctgatgcctgtgatgagtcattttgtcccagatttggagacgggcaaaggaatgtactttctgtttgtaaaatctgaatctaagaccccgggaggcctattagctcgtcctgttttaacaagttattacaatagccctcattttaaaaacagacgtcctgacccttacacaaactacactagcccaaatgaaactattctctgccctgattcataccagagcatgtattcccaaatgctctgtggactcagccaaaatgcacaagtccttcgtggtgggcgcggttttttgcctctggcttcatccgcgccatccgcttcttagagaagcactgggtcccttcttgtactgatattcgatccggtatcatgaatactgaattgattactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="64225" stop="65771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64525" g_stop="64906" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64907" i_stop="64999" i_length="93">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65000" g_stop="65471" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="856" r_length="474" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U325385" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64525" e_stop="64906"/>
          <exon e_start="65000" e_stop="65471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTGATAACAACTCTTGGCTAAAGCCATCCTATACTCTTTTTCTCTTTAGTCATTACATTATTAACAATGCCTGAGGCACCAAAGAATTCCCCTATTGTTGCTGAAGAAAACAAGAAAACTCTTCATTTCATTGAAGATGTTACCACCAAAGCTGATGAGATCCAAAAGAGAGTCCTTGCTGAAATACTTTGTCGAAATGCCAACGTTGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACTGATAGAGAGACTTTCAAAAAAGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGATATCAACCGCATTGCGAGTGGTGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTGAATTCTTGACAAGGTTGGAATGTTGTTAATTTTTACATACTTTTTGTTTTTACGATATTTTCCATTACGGTAAATGTAAATGAGATTTTTTTTTTGTAATACGCAGTTCTGGTACGTCAGGAGGGGAGAGGAAATTGATGCCAACAACAGAGGAAGAGCTTGGAAGACGATCGTTGCTTTATAGTCTTCTGATGCCTGTGATGAGTCATTTTGTCCCAGATTTGGAGACGGGCAAAGGAATGTACTTTCTGTTTGTAAAATCTGAATCTAAGACCCCGGGAGGCCTATTAGCTCGTCCTGTTTTAACAAGTTATTACAATAGCCCTCATTTTAAAAACAGACGTCCTGACCCTTACACAAACTACACTAGCCCAAATGAAACTATTCTCTGCCCTGATTCATACCAGAGCATGTATTCCCAAATGCTCTGTGGACTCAGCCAAAATGCACAAGTCCTTCGT-GTTGGCGCGG-TTTTTGCCTCTGGCTTCATCCGCGCCATCCGCTTCTTAGAGAAGCACT-GGTCCCTTCTTTGTACTGATATTCGATCCGGTATCATGAATACTGAATTGATTACTGAT</genome_strand>
        <mrna_strand>TCCCTCTGATAACAACTCTTGGCTAAAGCCATCCTATACTCTTTTTCTCTTTAGTCATTACATTATTAACAATGCCTGAGGCACCAAAGAATTCCCCTATTGTTGCTGAAGAAAACAAGAAAACTCTTCATTTCATTGAAGATGTTACCACCAAAGCTGATGAGATCCAAAAGAGAGTCCTTGCTGAAATACTTTGTCGAAATGCCAACGTTGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACTGATAGAGAGACTTTCAAAAAAGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGATATCAACCGCATTGCGAGTGGTGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTGAATTCTTGACAAG.............................................................................................TTCTGGTACGTCAGGAGGGGAGAGGAAATTGATGCCAACAACAGAGGAAGAGCTTGGAAGACGATCGTTGCTTTATAGTCTTCTGATGCCTGTGATGAGTCATTTTGTCCCAGATTTGGAGACGGGCAAAGGAATGTACTTTCTGTTTGTAAAATCTGAATCTAAGACCCCGGGAGGCCTATTAGCTCGTCCTGTTTTAACAAGTTATTACAATAGCCCTCATTTTAAAAACAGACGTCCTGACCCTTACACAAACTACACTAGCCCAAATGAAACTATTCTCTGCCCTGATTCATACCAGAGCATGTATTCCCAAATGCTCTGTGGACTCAGCCAAAATGCACAAGTCCTTCGTGGTGGGCGCGGTTTTTTGCCTCTGGCTTCATCCGCGCCATCCGCTTCTTAGAGAAGCACTGGGTCCCTTC-TTGTACTGATATTCGATCCGGTATCATGAATACTGAATTGATTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U337839" ref_strand="+" ref_description="SGN-U337839        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyllase (CLH2), identical to chlorophyllase (CLH2) GI:6729677 from (Arabidopsis thaliana) | chr5:17647677-17649539 FORWARD | Aliases: MQD19.22, MQD19_22(evalue: 2e-21, score=99.8) genbank/nr: gi|24210537|gb|AAN51935.1| chlorophyllase 3 [Brassica oleracea](evalue: 5e-20, score=101)">
      <seq>gatggagaaggtaagggatgatggtatagccttagatttcgaagtaggagatgaagttgttaagatcatcaacgttaagagctcttccttgccatgtccattattagtattttcacctactactgaaggttcctatcccattctactatttttccatggattccgcctccaacccgactcttacaagtccctcctcctacatatttcttcccatcaatatatcgccgttgctcctaagttctctctaatgacatctcgatgcgaagtaaaaacagcaaaaaaagtagcagagtggttatcagctaagaagctcaactctgtgctgccagagaaagtttttccagacatccagaaagtcgcggtgtcaggccacagcagaggaggtaaaacagcattcgccttagctttagcctatggatcaggagatagcaagggcgaatccatcgtcacttcaggtacactatttcacattcgagtagccaaagatgcatctgtggcggatttgaaaaaagaaataagtaatcaagaaaatcttccagagaatcatttgattctcatgttggatacgggacatggagattctatcatgttgaatgacgacgaaatttcccttgtggattatgggggtaacgnatggatcacattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="71786" stop="68688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71486" g_stop="71249" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71248" i_stop="71170" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71169" g_stop="70953" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="455" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70952" i_stop="69181" i_length="1772">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69180" g_stop="68988" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="649" r_length="194" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U337839" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71486" e_stop="71249"/>
          <exon e_start="71169" e_stop="70953"/>
          <exon e_start="69180" e_stop="68988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAGGTATACATACGGCAACAAACTCACTCACTCTGTATTTCATTCATCAATCAAAATTCATTTTTAAAAAATATGTTTGCAGTTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAGGTAAAACAGCATTCGCCTTAGCTTTAGCCTATGGATCAGGAGATAGCAAGGGCGAATCCATCGTCACTTCAGGTACCTGAACCTTTTTATCTTACATATATATATGTGCGCAATTTGAATTTCATATTACATCTTAGGAAGGGCAACCCGAAAACAAAAACAACCCCCTCTCAAAATCTCCGCGCTCCTCGGAATCGATCCAGTTGCTAAAGGCTCCTCTTGTTTCTGCTCTTCCAACATTCTCCAATATATTCCTTACAGTTTCAATCATTCAGTCCCTGTAGCTGTAATTGGTACCGGCTTGTCTAATAGACGAGCCTATGGTGTGTGTCCACCCGATGCACCAAACGGGGTGAATCATGCTGAGTTTTTCAACGAGAGTAAACCCCCTTGTTACTATTTTTTGGCCAAGAATTATGGGCATACTGATATGCTGGATGAAGGGGAAAAAATAATGGGAATTATGAAGAAAAAAGGGAAAAAGGAAACAAAGCACGATCTAAGAAGGACTATAGGAGGACTTTTTGTGGCTTTTTTCAAGGCTTATTTGGAAGGTCAAGCGGATGATTTAATTAATATTATTGAATCGCCTGGGATTCGTTGTCCTATTAAACTTGATCCTGTTATATCTATCGAAGAGTAAGATCATCAAATAAATAACACATCATTTTATTACTACCTCCTAATAATTGATGATGTTTGCATTAATTCTATATTTGTATTGAGTGAAGTATATCTATTGAATAAAAATGTTTGTTTGTTATCCTTTTCATTCATTTCTATATTTTCACTTGGAATACATAAATGCTCGTGTGAAACCAACATGTTGAGCAAATATATATATATTCACCCCTTCAAGTTCAATGATCGAATGTCTCTGATACATATTTGTAAAACAATGATCGATCGAGTACCTCATACTATATATCTTACTAAGAAATAAACGTCTCAAATCTCCGATCCATATATATATATATGTCGTGATCAATCATGTTCTCCACAATTGGTGTAATGCACCAAGAATTCGATTTTTTTGTAACTGATATTTTTGAAGTTGTCAAAAATAATATTTGTTATGTATATTAAATAAGTTTTGTATTAAAGAAGTATGCTTAATAAGATAATAGGATAAGAGCTTATTAAGGGTATAAAAGACATTCAATATTTAAAGAATATTTTAGTATGTTTAATTAGAAATATGTTTAGAGCACGTAGATATAAAAGTTATTCAATATAAATATTCATTCTTTTATAATTATATAAATAGGCAAATAGATAGTTAAATAGTAATTCTATCTAGAATCAAATCTGTTTTTCGAATTATAATTTCAAAAATCATAATTAGACTTTAAGCATTTTAGGAAAATACATAAATAATTCAATTAGAAACAAATCTGGTCAATAAATCACCTAGAACCAAAAAAGAATTCGAATTATAATTTTAAATATCATAATTAGACTTAAGCATTTTAGGAAAATACATAAATAATTCATTTAAAACCAAATCTAGTCCTTAGACTTGTGATTTCAAAAATCACATGAATAAATAATTCACTTAATTATATGGTATTTACACTTCCTTGTTGTGAATAAAATTATGGTATTAACATTAATATTAGGCATCTATAAATAAACCAATAGTCCTTATGTAACTTGCTCAATCATAATTTCTTCTCCCACAAAAAGAAATGTTCTCTATTTTTTTTTCTTGAGTGTATGAAAAATATGGCTCACATTGTTGTGGACACGTTGTTTTAATAAGGTGCTTTAACCGTTTTTGTTCTGAAGCTGAATATCCAACCCCCTTTGAAAGAAAATGAATTTAGTGATACAAATATTAACAGGTACACTATTTCACATTCGAGTAGCCAAAGATGCATCTGTGGCGGATTTGAAAAAAGAAATAAGTAATCAAGAAAATCTTCCAGAGAATCATTTGATTCTCATGTTGGATACGGGACATGGAGATTCTATCATGTTGAATGACGACGAAATTTCCCTTGTGGATTAT-GGGGTAACAGATGGATCACATTTTTA</genome_strand>
        <mrna_strand>GATGGAGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAG...............................................................................TTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAGGTAAAACAGCATTCGCCTTAGCTTTAGCCTATGGATCAGGAGATAGCAAGGGCGAATCCATCGTCACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTATTTCACATTCGAGTAGCCAAAGATGCATCTGTGGCGGATTTGAAAAAAGAAATAAGTAATCAAGAAAATCTTCCAGAGAATCATTTGATTCTCATGTTGGATACGGGACATGGAGATTCTATCATGTTGAATGACGACGAAATTTCCCTTGTGGATTATGGGGGTAACGNATGGATCACATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323475" ref_strand="+" ref_description="SGN-U323475        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | chlorophyllase (CLH2), identical to chlorophyllase (CLH2) GI:6729677 from (Arabidopsis thaliana) | chr5:17647677-17649539 FORWARD | Aliases: MQD19.22, MQD19_22(evalue: 3e-45, score=179) genbank/nr: gi|15240020|ref|NP_199199.1| AtCLH2 (gb|AAF27046.1) [Arabidopsis thaliana] gi|30912739|sp|Q9M7I7|CLH2_ARATH Chlorophyllase 2, chloroplast precursor (AtCLH2) (Chlorophyll-chlorophyllido hydrolase 2) (Chlase 2) gi|6729677|gb|AAF27046.1| AtCLH2 [Arabidopsis thaliana] gi|10177956|dbj|BAB11315.1| AtCLH2 [Arabidopsis thaliana](evalue: 2e-43, score=179)">
      <seq>tgatggagaaggtaagggatgatggtatagccttagatttcgaagtaggagatgaagttgttaagatcatcaacgttaagagctcttccttgccatgtccattattagtattttcacctactactgaaggttcctatcccattctactatttttccatggattccgcctccaacccgactcttacaagtccctcctcctacatatttcttcccatcaatatatcgccgttgctcctaagttctctctaatgacatctcgatgcgaagtaaaaacagcaaaaaaagtagcagagtggttatcagctaagaagctcaactctgtgctgccagagaaagtttttccagacatccagaaagtcgcggtgtcaggccacagcagaggaggaagggcaacccgaaaacaaaaacaaccccctctcaaaatctccgcgctcctcggaatcgatccagttgctaaaggctcctcttgtttctgctcttccaacattctccaatatattccttacagtttcaatcattcagtccctgtagctgtaattggtaccggcttgtctaatagacgagcctatggtgtgtgtccacccgatgcaccaaacggggtgaatcatgctgagtttttcaacgagagtaaacccccttgttactattttttggccaagaattatgggcatactgatatgctggatgaaggggaaaaaataatgggaattatgaagaaaaaagggaaaaaggaaacaaagcacgatctaagaaggactataggaggactttttgtggcttttttcaaggcttatttggaaggtcaagcggatgatttaattaatattattgaatcgcctgggattcgttgtcctattaaacttgatcctgttatatctatcgaagagtaagatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="71787" stop="70075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71487" g_stop="71249" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71248" i_stop="71170" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71169" g_stop="71025" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="384" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71024" i_stop="70888" i_length="137">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70887" g_stop="70375" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="897" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U323475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71487" e_stop="71249"/>
          <exon e_start="71169" e_stop="71025"/>
          <exon e_start="70887" e_stop="70375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGAGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAGGTATACATACGGCAACAAACTCACTCACTCTGTATTTCATTCATCAATCAAAATTCATTTTTAAAAAATATGTTTGCAGTTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAGGTAAAACAGCATTCGCCTTAGCTTTAGCCTATGGATCAGGAGATAGCAAGGGCGAATCCATCGTCACTTCAGGTACCTGAACCTTTTTATCTTACATATATATATGTGCGCAATTTGAATTTCATATTACATCTTAGGAAGGGCAACCCGAAAACAAAAACAACCCCCTCTCAAAATCTCCGCGCTCCTCGGAATCGATCCAGTTGCTAAAGGCTCCTCTTGTTTCTGCTCTTCCAACATTCTCCAATATATTCCTTACAGTTTCAATCATTCAGTCCCTGTAGCTGTAATTGGTACCGGCTTGTCTAATAGACGAGCCTATGGTGTGTGTCCACCCGATGCACCAAACGGGGTGAATCATGCTGAGTTTTTCAACGAGAGTAAACCCCCTTGTTACTATTTTTTGGCCAAGAATTATGGGCATACTGATATGCTGGATGAAGGGGAAAAAATAATGGGAATTATGAAGAAAAAAGGGAAAAAGGAAACAAAGCACGATCTAAGAAGGACTATAGGAGGACTTTTTGTGGCTTTTTTCAAGGCTTATTTGGAAGGTCAAGCGGATGATTTAATTAATATTATTGAATCGCCTGGGATTCGTTGTCCTATTAAACTTGATCCTGTTATATCTATCGAAGAGTAAGATCATC</genome_strand>
        <mrna_strand>TGATGGAGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAG...............................................................................TTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAG.........................................................................................................................................GAAGGGCAACCCGAAAACAAAAACAACCCCCTCTCAAAATCTCCGCGCTCCTCGGAATCGATCCAGTTGCTAAAGGCTCCTCTTGTTTCTGCTCTTCCAACATTCTCCAATATATTCCTTACAGTTTCAATCATTCAGTCCCTGTAGCTGTAATTGGTACCGGCTTGTCTAATAGACGAGCCTATGGTGTGTGTCCACCCGATGCACCAAACGGGGTGAATCATGCTGAGTTTTTCAACGAGAGTAAACCCCCTTGTTACTATTTTTTGGCCAAGAATTATGGGCATACTGATATGCTGGATGAAGGGGAAAAAATAATGGGAATTATGAAGAAAAAAGGGAAAAAGGAAACAAAGCACGATCTAAGAAGGACTATAGGAGGACTTTTTGTGGCTTTTTTCAAGGCTTATTTGGAAGGTCAAGCGGATGATTTAATTAATATTATTGAATCGCCTGGGATTCGTTGTCCTATTAAACTTGATCCTGTTATATCTATCGAAGAGTAAGATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326120" ref_strand="+" ref_description="SGN-U326120        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT4G27300.1 | Symbol: None | S-locus protein kinase, putative, similar to receptor protein kinase (Ipomoea trifida) gi:836954:gb:AAC23542; contains S-locus glycoprotein family domain, Pfam:PF00954 | chr4:13669314-13672354 REVERSE | Aliases: M4I22.110, M4I22_110 (evalue: 4e-98, score=355) genbank/nr: gi|15237047|ref|NP_194460.1| S-locus protein kinase, putative [Arabidopsis thaliana] gi|7428020|pir||T05754 S-receptor kinase (EC 2.7.1.-) M4I22.110 precursor - Arabidopsis thaliana gi|3269291|emb|CAA19724.1| putative receptor protein kinase [Arabidopsis thaliana] gi|7269583|emb|CAB79585.1| putative receptor protein kinase [Arabidopsis thaliana](evalue: 3e-96, score=355)">
      <seq>tgtccaggacttccacacaaggacaagatgagttcatgaatgaagtgatgtatattgtgaaacttcagcatagaaatcttgtgaagattctcggatgttgcatcgaaggagaagaaagaatgttgatctatgagtacatgccaagtggaagtcttgattcatttatatttgatgacacacgaagcacggtattagactggtctaagcgctttcacataatcaacgggatagctcggggacttgtgtatctgcatcaagattctcagttgaggatcattcacagggacctgaaagctaacaacattttactagacaatgacatgaatccaaagatatcagacttcggtatagcaagaagttgtgaagatgacaagtttggagccaagacacaccgagtagttggaacatatggctacctctcaccggaatatgctgtacatggtgtctactcggtgaagtcagatgtatttagctttggtgtcttagttcttgaaattgtaagtgggaaagggaacagaaaattctctcatccggatcataaccttaacctccttggacatgcatggacactctataaagaaggtagatcaatggaattactcggggatttccccattggtgtttgttctacacctgaagttatacgatcaatccatgttggtctattgtgtgtgcaacatcgtccagaagatcgtccaagtatgtcttcagtggttatgatgttaaacaatgaaggtgtactgccacctgctaaacaaccagctttcttcgtagaaacaaacacaccagatagtgaattctcttctagtcaacatgcacatagtacagtgaatgagatcaccatcacaacattagatcccagatagtaaattcttcattgcaaatagaaatccttcattcttttcttctttgtagcaatgtagggcgaaagttcccactccagctactcaagaagagtgcagtcatcttcttgtaacatggtgcaacactgctaacatgtgttaaaacattttctttcaactatttcactacaacttgttactttgtacaaaggtgaataggaaatattatgtcctatcccaaatagtttgagtttaacgcagaattgcccgattgatggaccaattttgctttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="77010" stop="79127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77310" g_stop="77480" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77481" i_stop="77706" i_length="226">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77707" g_stop="77944" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="409" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77945" i_stop="78018" i_length="74">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78019" g_stop="78169" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="560" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78170" i_stop="78249" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78250" g_stop="78827" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="1138" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U326120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1138</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77310" e_stop="77480"/>
          <exon e_start="77707" e_stop="77944"/>
          <exon e_start="78019" e_stop="78169"/>
          <exon e_start="78250" e_stop="78827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCAGGACTTCCACACAAGGACAAGATGAGTTCATGAATGAAGTGATGTATATTGTGAAACTTCAGCATAGAAATCTTGTGAAGATTCTCGGATGTTGCATCGAAGGAGAAGAAAGAATGTTGATCTATGAGTACATGCCAAGTGGAAGTCTTGATTCATTTATATTTGGTAAGGATTTCTCAAAAAAAAATAAAAAAAATTGTGCTTAACAATTACATTTCAGTTGAATAGATGCCCTGTAGGAGTACCCAAATAATCCTCTCGGCCCAAAGTTATGTTCTTTATTGTTACTTTTCTGATAAAAGAAGTTCTTATCTAGTTAGATGTTTGAATCCCACTCTCAGTTTTACCTATTTTGTGTGAATTAATGCTCCAACTATGAAACTTTTAGCAGATGACACACGAAGCACGGTATTAGACTGGTCTAAGCGCTTTCACATAATCAACGGGATAGCTCGGGGACTTGTGTATCTGCATCAAGATTCTCAGTTGAGGATCATTCACAGGGACCTGAAAGCTAACAACATTTTACTAGACAATGACATGAATCCAAAGATATCAGACTTCGGTATAGCAAGAAGTTGTGAAGATGACAAGTTTGGAGCCAAGACACACCGAGTAGTTGGAACATAGTAAGAACCTTGAGATTATCATAGTATGTTTATCCAGCATTAGTAATGCTAATTTCTGTTTACATTTTATGCAGTGGCTACCTCTCACCGGAATATGCTGTACATGGTGTCTACTCGGTGAAGTCAGATGTATTTAGCTTTGGTGTCTTAGTTCTTGAAATTGTAAGTGGGAAAGGGAACAGAAAATTCTCTCATCCGGATCATAACCTTAACCTCCTTGGACATGTAAGGGTTGTGTTTTTCACTGTCCATTAATAAATTATCTCGTAAACATGGTCATGCTAACACGACACTAAAATCTACAGGCATGGACACTCTATAAAGAAGGTAGATCAATGGAATTACTCGGGGATTTCCCCATTGGTGTTTGTTCTACACCTGAAGTTATACGATCAATCCATGTTGGTCTATTGTGTGTGCAACATCGTCCAGAAGATCGTCCAAGTATGTCTTCAGTGGTTATGATGTTAAACAATGAAGGTGTACTGCCACCTGCTAAACAACCAGCTTTCTTCGTAGAAACAAACACACCAGATAGTGAATTCTCTTCTAGTCAACATGCACATAGTACAGTGAATGAGATCACCATCACAACATTAGATCCCAGATAGTAAATTCTTCATTGCAAATAGAAATCCTTCATTCTTTTCTTCTTTGTAGCAATGTAGGGCGAAAGTTCCCACTCCAGCTACTCAAGAAGAGTGCAGTCATCTTCTTGTAACATGGTGCAACACTGCTAACATGTGTTAAAACATTTTCTTTCAACTATTTCACTACAACTTGTTACTTTGTACAAAGGTGAATAGGAAATATTATGTCCTATCCCAAATAGTTTGAGTTTAACGCAGAATTGCCCGATTGATGGACCAATTTTGCTTTCACT</genome_strand>
        <mrna_strand>TGTCCAGGACTTCCACACAAGGACAAGATGAGTTCATGAATGAAGTGATGTATATTGTGAAACTTCAGCATAGAAATCTTGTGAAGATTCTCGGATGTTGCATCGAAGGAGAAGAAAGAATGTTGATCTATGAGTACATGCCAAGTGGAAGTCTTGATTCATTTATATTTG..................................................................................................................................................................................................................................ATGACACACGAAGCACGGTATTAGACTGGTCTAAGCGCTTTCACATAATCAACGGGATAGCTCGGGGACTTGTGTATCTGCATCAAGATTCTCAGTTGAGGATCATTCACAGGGACCTGAAAGCTAACAACATTTTACTAGACAATGACATGAATCCAAAGATATCAGACTTCGGTATAGCAAGAAGTTGTGAAGATGACAAGTTTGGAGCCAAGACACACCGAGTAGTTGGAACATA..........................................................................TGGCTACCTCTCACCGGAATATGCTGTACATGGTGTCTACTCGGTGAAGTCAGATGTATTTAGCTTTGGTGTCTTAGTTCTTGAAATTGTAAGTGGGAAAGGGAACAGAAAATTCTCTCATCCGGATCATAACCTTAACCTCCTTGGACAT................................................................................GCATGGACACTCTATAAAGAAGGTAGATCAATGGAATTACTCGGGGATTTCCCCATTGGTGTTTGTTCTACACCTGAAGTTATACGATCAATCCATGTTGGTCTATTGTGTGTGCAACATCGTCCAGAAGATCGTCCAAGTATGTCTTCAGTGGTTATGATGTTAAACAATGAAGGTGTACTGCCACCTGCTAAACAACCAGCTTTCTTCGTAGAAACAAACACACCAGATAGTGAATTCTCTTCTAGTCAACATGCACATAGTACAGTGAATGAGATCACCATCACAACATTAGATCCCAGATAGTAAATTCTTCATTGCAAATAGAAATCCTTCATTCTTTTCTTCTTTGTAGCAATGTAGGGCGAAAGTTCCCACTCCAGCTACTCAAGAAGAGTGCAGTCATCTTCTTGTAACATGGTGCAACACTGCTAACATGTGTTAAAACATTTTCTTTCAACTATTTCACTACAACTTGTTACTTTGTACAAAGGTGAATAGGAAATATTATGTCCTATCCCAAATAGTTTGAGTTTAACGCAGAATTGCCCGATTGATGGACCAATTTTGCTTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346181" ref_strand="+" ref_description="SGN-U346181        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | Met-10+ like family protein, ; contains Pfam profile PF02475: Met-10+ like-protein | chr4:13687202-13690376 REVERSE | Aliases: F27G19.9(evalue: 1e-12, score=70.9) genbank/nr: SAM(evalue: 4e-12, score=75.1)">
      <seq>cttataacagtttattttatagtcaagcatcctcaagaagcaacagtacacagaaaacataataagagaagtaccaaaacaaaaaaaatcttgcagacaaggcttgtgaactgcttatacacaacctcaacgcctcaagtaaagaactagaaatctaaaaacagaatacagaacaagatattcaacttagaaactctcattataatttttctcctatatatgctttcgataaaactcatctacatccgaaactgggaaagacactaacatgtagttgttgacgaagtcttcaattactcaaacaataattacctatagagttaatttagcaaatgccactgtctcaggcagaacaaatgatgcacacaacatccattttcctggggcaacaaggcgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="78693" stop="79692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78993" g_stop="79392" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U346181" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78993" e_stop="79392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATAACAGTTTATTTTATAGTCAAGCATCCTCAAGAAGCAACAGTACACAGAAAACATAATAAGAGAAGTACCAAAACAAAAAAAATCTTGCAGACAAGGCTTGTGAACTGCTTATACACAACCTCAACGCCTCAAGTAAAGAACTAGAAATCTAAAAACAGAATACAGAACAAGATATTCAACTTAGAAACTCTCATTATAATTTTTCTCCTATATATGCTTTCGATAAAACTCATCTACATCCGAAACTGGGAAAGACACTAACATGTAGTTGTTGACGAAGTCTTCAATTACTCAAACAATAATTACCTATAGAGTTAATTTAGCAAATGCCACTGTCTCAGGCAGAACAAATGATGCACACAACATCCATTTTCCTGGTGCAACAAGGCGAACT</genome_strand>
        <mrna_strand>CTTATAACAGTTTATTTTATAGTCAAGCATCCTCAAGAAGCAACAGTACACAGAAAACATAATAAGAGAAGTACCAAAACAAAAAAAATCTTGCAGACAAGGCTTGTGAACTGCTTATACACAACCTCAACGCCTCAAGTAAAGAACTAGAAATCTAAAAACAGAATACAGAACAAGATATTCAACTTAGAAACTCTCATTATAATTTTTCTCCTATATATGCTTTCGATAAAACTCATCTACATCCGAAACTGGGAAAGACACTAACATGTAGTTGTTGACGAAGTCTTCAATTACTCAAACAATAATTACCTATAGAGTTAATTTAGCAAATGCCACTGTCTCAGGCAGAACAAATGATGCACACAACATCCATTTTCCTGGGGCAACAAGGCGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331616" ref_strand="+" ref_description="SGN-U331616        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | Met-10+ like family protein, ; contains Pfam profile PF02475: Met-10+ like-protein | chr4:13687202-13690376 REVERSE | Aliases: F27G19.9(evalue: 2e-42, score=168) genbank/nr: gi|42567181|ref|NP_194464.3| Met-10+ like family protein [Arabidopsis thaliana] >gi|37202010|gb|AAQ89620.1| At4g27340 [Arabidopsis thaliana] (evalue: 1e-40, score=168)">
      <seq>ctaatttgcaacagaaagggctaaaatggctctgtatccattgcccaccgccattatactcaacagaatcaccccttttacttcccgcttcttccccaaacctctatcttcttccctttccgcctccgtcgccgccattacctcgaccttaccacaacacctttcctatggaccttccctccacaaaggccacaaaacttcacaccgaaactccgatgaagaaagcttcactagagtcttcgatatcactgctttacgagtccctgcagaacaatgtttctcactcgagagcagattacgcggacaccttttaaattggccgcgcattcgtaacattgctagggttgccggtgatgatattgatgacgacttgaaggagtttattggaaatgataatactactgatgatgaaacacaaacagtattggaacggagaatctatgggaaaggtgaaggtgatggggagaaaatgtgttcggtattgtatagagataagcttgcaaagactttcaattcgataggatatgtaaagtttgagaatttggctaaaatatcgcggccgaagaataaaaatggaagagagaggaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="83943" stop="82750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83643" g_stop="83050" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U331616" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83643" e_stop="83050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTGCAACAGAAAGGGCTAAAATGGCTCTGTATCCATTGCCCACCGCCATTATACTCAACAGAATCACCCCTTTTACTTCCCGCTTCTTCCCCAAACCTCTATCTTCTTCCCTTTCCGCCTCCGTCGCCGCCATTACCTCGACCTTACCACAACACCTTTCCTATGGACCTTCCCTCCACAAAGGCCACAAAACTTCACACCGAAACTCCGATGAAGAAAGCTTCACTAGAGTCTTCGATATCACTGCTTTACGAGTCCCTGCAGAACAATGTTTCTCACTCGAGAGCAGATTACGCGGACACCTTTTAAATTGGCCGCGCATTCGTAACATTGCTAGGGTTGCCGGTGATGATATTGATGACGACTTGAAGGAGTTTATTGGAAATGATAATACTACTGATGATGAAACACAAACAGTATTGGAACGGAGAATCTATGGGAAAGGTGAAGGTGATGGGGAGAAAATGTGTTCGGTATTGTATAGAGATAAGCTTGCAAAGACTTTCAATTCGATAGGATATGTAAAGTTTGAGAATTTGGCTAAAATATCGCGGCCGAAGAAGAAAAAATGGAAGAGAGAGGAAAAAGA</genome_strand>
        <mrna_strand>CTAATTTGCAACAGAAAGGGCTAAAATGGCTCTGTATCCATTGCCCACCGCCATTATACTCAACAGAATCACCCCTTTTACTTCCCGCTTCTTCCCCAAACCTCTATCTTCTTCCCTTTCCGCCTCCGTCGCCGCCATTACCTCGACCTTACCACAACACCTTTCCTATGGACCTTCCCTCCACAAAGGCCACAAAACTTCACACCGAAACTCCGATGAAGAAAGCTTCACTAGAGTCTTCGATATCACTGCTTTACGAGTCCCTGCAGAACAATGTTTCTCACTCGAGAGCAGATTACGCGGACACCTTTTAAATTGGCCGCGCATTCGTAACATTGCTAGGGTTGCCGGTGATGATATTGATGACGACTTGAAGGAGTTTATTGGAAATGATAATACTACTGATGATGAAACACAAACAGTATTGGAACGGAGAATCTATGGGAAAGGTGAAGGTGATGGGGAGAAAATGTGTTCGGTATTGTATAGAGATAAGCTTGCAAAGACTTTCAATTCGATAGGATATGTAAAGTTTGAGAATTTGGCTAAAATATCGCGGCCGAAGAA-TAAAAATGGAAGAGAGAGGAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339151" ref_strand="+" ref_description="SGN-U339151        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | histone H2A, putative, similar to histone H2A GI:7595337 from Arabidopsis thaliana, Triticum aestivum GI:536892, Picea abies SP:P35063; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4 | chr1:18930548-18931314 FORWARD | Aliases: F23H24.9, F23H24_9(evalue: 1e-45, score=181) genbank/nr: gi|15223708|ref|NP_175517.1| histone H2A, putative [Arabidopsis thaliana] gi|25294262|pir||G96547 probable histone H2A [imported] - Arabidopsis thaliana gi|12320785|gb|AAG50540.1| histone H2A, putative [Arabidopsis thaliana] gi|13877851|gb|AAK44003.1| putative histone H2A protein [Arabidopsis thaliana] gi|17065594|gb|AAL33777.1| putative histone H2A protein [Arabidopsis thaliana](evalue: 1e-43, score=181)">
      <seq>gggcgattggcggccaatcggccgaattgaccgtttctctctatacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttctatcttnnnnaaaaaaananaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87164" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87466" g_stop="87719" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="281" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88357" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="745" r_length="464" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="756" polyA_stop="777"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U339151" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87466" e_stop="87719"/>
          <exon e_start="87894" e_stop="88357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCGTTTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTCGCA</genome_strand>
        <mrna_strand>TGACCGTTTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343667" ref_strand="+" ref_description="SGN-U343667        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Kinesin,(evalue: 2e-05, score=52.8)">
      <seq>tgagaaattgaatcattttcgcccttgtttgctttcatacattagttttgtttattgccgtttttcaatctttcagcacctttactgcaaaattcaaagcaaacggtagtagatgtagaagaatgttgttttgagtttcaattcacgatcccacatccataaatttctccgacatcccattccccctttctctctttgttaccataatttcaaatggctcctaagaaccagaacaagccgccacttcgtactctttcagcactcccttctgatagtaactacacagcaggtgaggtttcattagagaagagaaggagaatagggaatccaaaaataccgtccacagctactggtgcaagaacccggcaggcattagcagtggtgaatgaggttgcagatgtgcctcccgctagtggtccgccaagtaatgcaggttcagacggcgggatagttgagtttagcaaagaagaagttgaagctttactcactgagaaattgaaaaccaagaacaagtataatacaaaggtaagtggatgaactattcttcagattaatggtaatactggtatgaatgtggttgtggttttggttattttgttaattaaggtgctaacagtaaagttaacagaagtagccaattctgtgcgtggaaagttaactgttttcatattaactgaatatgtatctgcttaatgtatattgatgcaaagatttctactacttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="91983" stop="93621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92283" g_stop="92555" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92556" i_stop="92868" i_length="313">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92869" g_stop="93321" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="726" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U343667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92283" e_stop="92555"/>
          <exon e_start="92869" e_stop="93321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAATTGAATCATTTTCGCCCTTGTTTGCTTTCATACATTAGTTTTGTTTATTGCCGTTTTTCAATCTTTCAGCACCTTTACTGCAAAATTCAAAGCAAACGGTAGTAGATGTAGAAGAATGTTGTTTTGAGTTTCAATTCACGATCCCACATCCATAAATTTCTCCGACATCCCATTCCCCCTTTCTCTCTTTGTTACCATAATTTCAAATGGCTCCTAAGAACCAGAACAAGCCGCCACTTCGTACTCTTTCAGCACTCCCTTCTGATGTAAGTTTTCTCCAGAATTCATTTTTACTCTATATATCCTCATCGGTTTGTACTTTGATTATGCTCATTTCTTCTGATTGTGTAGTTGAAATTGACGAATTTCACATTTCTGTGCATTTTAGGACTCATTTTGTTATCCTACCTTTCAATGTTTTTGCTTTTTTTGCTGTGGAGTTTCATTTTCTCTACTGGGTGTTTCTAGTTTTGATGTTCATGGTCAAAATTTCCTAATTTGATTGTGTGGGTTAGGTTATTGTGATGTTTAAGTGAAGAAGTTCCTAATGTTGGATAGTTTACTGTTTTTGGTTTGCAGAGTAACTACACAGCAGGTGAGGTTTCATTAGAGAAGAGAAGGAGAATAGGGAATCCAAAAATACCGTCCACAGCTACTGGTGCAAGAACCCGGCAGGCATTAGCAGTGGTGAATGAGGTTGCAGATGTGCCTCCCGCTAGTGGTCCGCCAAGTAATGCAGGTTCAGACGGCGGGATAGTTGAGTTTAGCAAAGAAGAAGTTGAAGCTTTACTCACTGAGAAATTGAAAACCAAGAACAAGTATAATACAAAGGTAAGTGGATGAACTATTCTTCAGATTAATGGTAATACTGGTATGAATGTGGTTGTGGTTTTGGTTATTTTGTTAATTAAGGTGCTAACAGTAAAGTTAACAGAAGTAGCCAATTCTGTGCGTGGAAAGTTAACTGTTTTCATATTAACTGAATATGTATCTGCTTAATGTATATTGATGCAAAGATTTCTACTACTTCTA</genome_strand>
        <mrna_strand>TGAGAAATTGAATCATTTTCGCCCTTGTTTGCTTTCATACATTAGTTTTGTTTATTGCCGTTTTTCAATCTTTCAGCACCTTTACTGCAAAATTCAAAGCAAACGGTAGTAGATGTAGAAGAATGTTGTTTTGAGTTTCAATTCACGATCCCACATCCATAAATTTCTCCGACATCCCATTCCCCCTTTCTCTCTTTGTTACCATAATTTCAAATGGCTCCTAAGAACCAGAACAAGCCGCCACTTCGTACTCTTTCAGCACTCCCTTCTGAT.........................................................................................................................................................................................................................................................................................................................AGTAACTACACAGCAGGTGAGGTTTCATTAGAGAAGAGAAGGAGAATAGGGAATCCAAAAATACCGTCCACAGCTACTGGTGCAAGAACCCGGCAGGCATTAGCAGTGGTGAATGAGGTTGCAGATGTGCCTCCCGCTAGTGGTCCGCCAAGTAATGCAGGTTCAGACGGCGGGATAGTTGAGTTTAGCAAAGAAGAAGTTGAAGCTTTACTCACTGAGAAATTGAAAACCAAGAACAAGTATAATACAAAGGTAAGTGGATGAACTATTCTTCAGATTAATGGTAATACTGGTATGAATGTGGTTGTGGTTTTGGTTATTTTGTTAATTAAGGTGCTAACAGTAAAGTTAACAGAAGTAGCCAATTCTGTGCGTGGAAAGTTAACTGTTTTCATATTAACTGAATATGTATCTGCTTAATGTATATTGATGCAAAGATTTCTACTACTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345467" ref_strand="-" ref_description="SGN-U345467        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | kinesin-like protein A, putative, kinesin like protein A, Arabidopsis thaliana, gb:Q07970 | chr4:2675136-2679480 FORWARD | Aliases: C17L7.110, C17L7_110(evalue: 5e-30, score=128) genbank/nr: gi|7267279|emb|CAB81061.1| kinesin-like protein [Arabidopsis thaliana] (evalue: 3e-28, score=128)">
      <seq>agcatgtgcctttaggaattcaaagctcacataccttctccagccctgtctaggtggtaactcgaagacattaatgtttgttaatgtttcaccggatcctccatctgtgggtgaatccctgtgttcactccgatttgctgcacgggttaatgcttgtgagattgggatcccaaggcgtcaaactagcttgcgtcccatagattctcgcctaagcattggctaacattttagcggaacactcgttctagcttttagaattgttttgtctgtaattctgtatggcagtttgatatttaactgagaaactatattacctctaacaacatccacctccaatttgtatagtggataaagtattttctttgtatcagtaatagcatatggggctttgtattactatacttgtcattttttatgaggagttacctgtgataatttacctcttcttttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98253" stop="99484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98553" g_stop="98596" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98597" i_stop="98770" i_length="174">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98771" g_stop="99181" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="452" r_length="409" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="469"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U345467" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345467" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98553" e_stop="98596"/>
          <exon e_start="98771" e_stop="99181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGTGCCTTTTAGGAATTCAAAGCTCACATACCTTCTCCAGGTAAAAATGATTATTCAAGCTCCTAGTTAAAATACATGGTTCTGGTTAATTTCCTAGGCTGGTAAAGATAATACTTTTAGGTTTGATCTGTATGTTTCCAATGTCATTTTAACAGATGTGTATTTTCGCACCTTTTGTTTCACACACCTGCTGATTGTCACATGTTTTGCTCAGCCCTGTCTAGGTGGTAACTCGAAGACATTAATGTTTGTTAATGTTTCACCGGATCCTCCATCTGTGGGTGAATCCCTGTGTTCACTCCGATTTGCTGCACGGGTTAATGCTTGTGAGATTGGGATCCCAAGGCGTCAAACTAGCTTGCGTCCCATAGATTCTCGCCTAAGCATTGGCTAACATTTTAGCGGAACACTCGTTCTAGCTTTTAGAATTGTTTTGTCTGTAATTCTGTATGGCAGTTTGATATTTAACTGAGAAACTATATTACCTCTAACAACATCCACCTCCAATTTGTATAGTGGATAAAGTATTTTCTTTGTATCAGTAATAGCATATGGGGCTTTGTATTACTATACTTGTCATTTTTTATGAGGAGTTACCTGTGTGATAATTTACCTCTTCTTTTTT</genome_strand>
        <mrna_strand>AGCATGTGCC-TTTAGGAATTCAAAGCTCACATACCTTCTCCAG..............................................................................................................................................................................CCCTGTCTAGGTGGTAACTCGAAGACATTAATGTTTGTTAATGTTTCACCGGATCCTCCATCTGTGGGTGAATCCCTGTGTTCACTCCGATTTGCTGCACGGGTTAATGCTTGTGAGATTGGGATCCCAAGGCGTCAAACTAGCTTGCGTCCCATAGATTCTCGCCTAAGCATTGGCTAACATTTTAGCGGAACACTCGTTCTAGCTTTTAGAATTGTTTTGTCTGTAATTCTGTATGGCAGTTTGATATTTAACTGAGAAACTATATTACCTCTAACAACATCCACCTCCAATTTGTATAGTGGATAAAGTATTTTCTTTGTATCAGTAATAGCATATGGGGCTTTGTATTACTATACTTGTCATTTTTTATGAGGAGTTACC--TGTGATAATTTACCTCTTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327202" ref_strand="+" ref_description="SGN-U327202        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:7230078-7231200 REVERSE | Aliases: F3H11.7(evalue: 7e-84, score=307) genbank/nr: gi|15232333|ref|NP_188704.1| expressed protein [Arabidopsis thaliana] gi|9294347|dbj|BAB02244.1| gene_id:F3H11.7~unknown protein [Arabidopsis thaliana] gi|16604474|gb|AAL24243.1| AT3g20680/F3H11_7 [Arabidopsis thaliana] gi|23505885|gb|AAN28802.1| At3g20680/F3H11_7 [Arabidopsis thaliana](evalue: 6e-82, score=307)">
      <seq>aaaattgcaagtattttctttgcaaaaactctattcccttggacaagaattgacttcaaatggcttctaatcttgtaaaatttcattcttcattccagttcaagctgaacacaacaagttccttaagttttttaggatcaaaacaacaacttaacaatctttatcactctattttcttcacaaaacccaagtcagatttttcacctcttcaatgttcactatcttctcctactccacctataactaaagaagatgccgtttctcaagcaaaattctctctgtcaactactttagagaaaccccttaacaatcccaaactcatagggaaaatcaagaaactcaaacaaccaagatttcgtgtcgaaattccagttgttgatgactccccatctgcattagcccaacttgcttttgacatttttggagaaatgcccatcaaaagaaaagccccaaacatcaagattctacttttatggcctaaccaaaccttaacccaagctgcacaagcagaatttgaaaagaagaaatcttcaaaccccatcattgaaaatttagatatttcatcaagaattgaaatttctgctgatgtggtagtgtttatggctccagaggcttcaatattgactgtaatgaaggagatttctgatacattgtacccaatgcctgtcgtgatttttaatcctaaatggggttttgatgaagagagtagttttggtgagttgagtggatttgtaggttcatttgaggttgtgtattcatttatgggattggaagttagagggatattgagtaatagaaaaggggtgatgtttaaatgtgttaaagatggtgttttgagtggtgagaaatggtatgtgttcgtcgaagaagatggagagttgaaagtggtttcaaggtttaaagcaaggccatcaattgttgaagttgagaatgttttgtataacttgatggccgtgaattcgccaatcacgaaatcagctaagttcttgaaagatttggtgtcaaatgttagggggaaaaagtaaagcacaagcaattcaaggtattacaactcacatcatttcaactttaggatagctatcctttgcaatgatattattgttttttcgagattttgttcttcctagaacagttacagtatgaagtccatgtactagctttgccaggttcaaaactttaacatggaagaacaaataataacctattggctgcatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99283" stop="101103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99583" g_stop="100808" g_length="1226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1226" r_length="1226" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U327202" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99583" e_stop="100808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGCAAGTATTTTCTTTGCAAAAACTCTATTCCCTTGGACAAGAATTGACTTCAAATGGCTTCTAATCTTGTAAAATTTCATTCTTCATTCCAGTTCAAGCTGAACACAACAAGTTCCTTAAGTTTTTTAGGATCAAAACAACAACTTAACAATCTTTATCACTCTATTTTCTTCACAAAACCCAAGTCAGATTTTTCACCTCTTCAATGTTCACTATCTTCTCCTACTCCACCTATAACTAAAGAAGATGCCGTTTCTCAAGCAAAATTCTCTCTGTCAACTACTTTAGAGAAACCCCTTAACAATCCCAAACTCATAGGGAAAATCAAGAAACTCAAACAACCAAGATTTCGTGTCGAAATTCCAGTTGTTGATGACTCCCCATCTGCATTAGCCCAACTTGCTTTTGACATTTTTGGAGAAATGCCCATCAAAAGAAAAGCCCCAAACATCAAGATTCTACTTTTATGGCCTAACCAAACCTTAACCCAAGCTGCACAAGCAGAATTTGAAAAGAAGAAATCTTCAAACCCCATCATTGAAAATTTAGATATTTCATCAAGAATTGAAATTTCTGCTGATGTGGTAGTGTTTATGGCTCCAGAGGCTTCAATATTGACTGTAATGAAGGAGATTTCTGATACATTGTACCCAATGCCTGTCGTGATTTTTAATCCTAAATGGGGTTTTGATGAAGAGAGTAGTTTTGGTGAGTTGAGTGGATTTGTAGGTTCATTTGAGGTTGTGTATTCATTTATGGGATTGGAAGTTAGAGGGATATTGAGTAATAGAAAAGGGGTGATGTTTAAATGTGTTAAAGATGGTGTTTTGAGTGGTGAGAAATGGTATGTGTTCGTCGAAGAAGATGGAGAGTTGAAAGTGGTTTCAAGGTTTAAAGCAAGGCCATCAATTGTTGAAGTTGAGAATGTTTTGTATAACTTGATGGCCGTGAATTCGCCAATCACGAAATCAGCTAAGTTCTTGAAAGATTTGGTGTCAAATGTTAGGGGGAAAAAGTAAAGCACAAGCAATTCAAGGTATTACAACTCACATCATTTCAACTTTAGGATAGCTATCCTTTGCAATGATATTATTGTTTTTTCGAGATTTTGTTCTTCCTAGAACAGTTACAGTATGAAGTCCATGTACTAGCTTTGCCAGGTTCAAAACTTTAACATGGAAGAACAAATAATAACCTATTGGCTGCATGAACTAAGCATC</genome_strand>
        <mrna_strand>AAAATTGCAAGTATTTTCTTTGCAAAAACTCTATTCCCTTGGACAAGAATTGACTTCAAATGGCTTCTAATCTTGTAAAATTTCATTCTTCATTCCAGTTCAAGCTGAACACAACAAGTTCCTTAAGTTTTTTAGGATCAAAACAACAACTTAACAATCTTTATCACTCTATTTTCTTCACAAAACCCAAGTCAGATTTTTCACCTCTTCAATGTTCACTATCTTCTCCTACTCCACCTATAACTAAAGAAGATGCCGTTTCTCAAGCAAAATTCTCTCTGTCAACTACTTTAGAGAAACCCCTTAACAATCCCAAACTCATAGGGAAAATCAAGAAACTCAAACAACCAAGATTTCGTGTCGAAATTCCAGTTGTTGATGACTCCCCATCTGCATTAGCCCAACTTGCTTTTGACATTTTTGGAGAAATGCCCATCAAAAGAAAAGCCCCAAACATCAAGATTCTACTTTTATGGCCTAACCAAACCTTAACCCAAGCTGCACAAGCAGAATTTGAAAAGAAGAAATCTTCAAACCCCATCATTGAAAATTTAGATATTTCATCAAGAATTGAAATTTCTGCTGATGTGGTAGTGTTTATGGCTCCAGAGGCTTCAATATTGACTGTAATGAAGGAGATTTCTGATACATTGTACCCAATGCCTGTCGTGATTTTTAATCCTAAATGGGGTTTTGATGAAGAGAGTAGTTTTGGTGAGTTGAGTGGATTTGTAGGTTCATTTGAGGTTGTGTATTCATTTATGGGATTGGAAGTTAGAGGGATATTGAGTAATAGAAAAGGGGTGATGTTTAAATGTGTTAAAGATGGTGTTTTGAGTGGTGAGAAATGGTATGTGTTCGTCGAAGAAGATGGAGAGTTGAAAGTGGTTTCAAGGTTTAAAGCAAGGCCATCAATTGTTGAAGTTGAGAATGTTTTGTATAACTTGATGGCCGTGAATTCGCCAATCACGAAATCAGCTAAGTTCTTGAAAGATTTGGTGTCAAATGTTAGGGGGAAAAAGTAAAGCACAAGCAATTCAAGGTATTACAACTCACATCATTTCAACTTTAGGATAGCTATCCTTTGCAATGATATTATTGTTTTTTCGAGATTTTGTTCTTCCTAGAACAGTTACAGTATGAAGTCCATGTACTAGCTTTGCCAGGTTCAAAACTTTAACATGGAAGAACAAATAATAACCTATTGGCTGCATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329920" ref_strand="+" ref_description="SGN-U329920        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:22251015-22254030 REVERSE | Aliases: K5F14.9, K5F14_9(evalue: 3e-18, score=89) genbank/nr: breast(evalue: 2e-20, score=102)">
      <seq>ctagacaatatgcagattcaggccttctaaaagcaaatcattgcctgcttgttttttcatctccgggctgtatgacacagtatgcattgcgcatgtgttctgagctagattctattgcaacctttcctgctatgggctcaacttatgaggaagatcttgaaacaaaattagtggtagaggcaatccaaaagtggaatattttccagaaacaaaattacaaagaacgagttgataatgctgatatatatggtgaatttggatgttctgatagcagtaaagtatttcctgaaggaataaccaagggaaacagtctctcttcagagactagggacacatttattaaagaaaagataagatctgagctaggacatcatatatacatatccgaagcagaactccaaatgcataaacctcataatcaagtgtgggcaaaacctgaggtaagttttcgatcatttgtcatggataggattcacttggatgacgaaggtcgtggagaggctgaggttgaagtaataccaactcgtatggttgaggccaagtcaaaacgtttatttccagcattgaacttcaccatggcagaggaaccgagaaggataatgttggaacgacatgccaaacgagtagtgcctttgtaaatggtagtgacaacactagcctatattatgtaaatgatataagaagctccatggagactacacaatctaagtgtgtaaatactaacctagatattacagaaactgtcactcatttagaagatgaagcaggttagttgtttatttgaatttgaaggcaacgaaatgaattgcaactttatttttttttgcttttgttagttgttatctattttgttctgaattcagtaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="102932" stop="101371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102632" g_stop="102193" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102192" i_stop="102102" i_length="91">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102101" g_stop="101676" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="865" r_length="425" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="866" polyA_stop="877"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U329920" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102632" e_stop="102193"/>
          <exon e_start="102101" e_stop="101676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGACAATATGCAGATTCAGGCCTTCTAAAAGCAAATCATTGCCTGCTTGTTTTTTCATCTCCGGGCTGTATGACACAGTATGCATTGCGCATGTGTTCTGAGCTAGATTCTATTGCAACCTTTCCTGCTATGGGCTCAACTTATGAGGAAGATCTTGAAACAAAATTAGTGGTAGAGGCAATCCAAAAGTGGAATATTTTCCAGAAACAAAATTACAAAGAACGAGTTGATAATGCTGATATATATGGTGAATTTGGATGTTCTGATAGCAGTAAAGTATTTCCTGAAGGAATAACCAAGGGAAACAGTCTCTCTTCAGAGACTAGGGACACATTTATTAAAGAAAAGATAAGATCTGAGCTAGGACATCATATATACATATCCGAAGCAGAACTCCAAATGCATAAACCTCATAATCAAGTGTGGGCAAAACCTGAGGTACTTTAACCTTTGTACTTTAATTCAGCAGATTCACTTCCATCCTTTTTGTGTAATTGCTTAAATCTCCATAGTCTTATTTAATATGCAGGTAAGTTTTCGATCATTTGTCATGGATAGGATTCACTTGGATGACGAAGGTCGTGGAGAGGCTGAGGTTGAAGTAATACCAACTCGTATGGTTGAGGCCAAGTCAAAACGTTTATTTCCAGCATTGAACTTCACCATGGCAGAGGAACCGAGAAGGATAATGTTGGAACGACATGCCAAACGAGTAGTGCCTTTGTAAATGGTAGTGACAACACTAGCCTATATTATGTAAATGATATAAGAAGCTCCATGGAGACTACACAATCTAAGTGTGTAAATACTAACCTAGATATTACAGAAACTGTCACTCATTTAGAAGATGAAGCAGGTTAGTTGTTTATTTGAATTTGAAGGCAACGAAATGAATTGCAACTTTAATTTTTTTTTGCTTTTGTTAGTTGTTATCTATTTTGTTCTGAATTCAGTA</genome_strand>
        <mrna_strand>CTAGACAATATGCAGATTCAGGCCTTCTAAAAGCAAATCATTGCCTGCTTGTTTTTTCATCTCCGGGCTGTATGACACAGTATGCATTGCGCATGTGTTCTGAGCTAGATTCTATTGCAACCTTTCCTGCTATGGGCTCAACTTATGAGGAAGATCTTGAAACAAAATTAGTGGTAGAGGCAATCCAAAAGTGGAATATTTTCCAGAAACAAAATTACAAAGAACGAGTTGATAATGCTGATATATATGGTGAATTTGGATGTTCTGATAGCAGTAAAGTATTTCCTGAAGGAATAACCAAGGGAAACAGTCTCTCTTCAGAGACTAGGGACACATTTATTAAAGAAAAGATAAGATCTGAGCTAGGACATCATATATACATATCCGAAGCAGAACTCCAAATGCATAAACCTCATAATCAAGTGTGGGCAAAACCTGAG...........................................................................................GTAAGTTTTCGATCATTTGTCATGGATAGGATTCACTTGGATGACGAAGGTCGTGGAGAGGCTGAGGTTGAAGTAATACCAACTCGTATGGTTGAGGCCAAGTCAAAACGTTTATTTCCAGCATTGAACTTCACCATGGCAGAGGAACCGAGAAGGATAATGTTGGAACGACATGCCAAACGAGTAGTGCCTTTGTAAATGGTAGTGACAACACTAGCCTATATTATGTAAATGATATAAGAAGCTCCATGGAGACTACACAATCTAAGTGTGTAAATACTAACCTAGATATTACAGAAACTGTCACTCATTTAGAAGATGAAGCAGGTTAGTTGTTTATTTGAATTTGAAGGCAACGAAATGAATTGCAACTTT-ATTTTTTTTTGCTTTTGTTAGTTGTTATCTATTTTGTTCTGAATTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328138" ref_strand="+" ref_description="SGN-U328138        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | non-race specific disease resistance protein (NDR1), identical to non-race specific disease resistance protein (NDR1) GB:AF021346 (Arabidopsis thaliana) (Science 278 (5345), 1963-1965 (1997)) | chr3:7194852-7195742 FORWARD | Aliases: K10D20.24(evalue: 8e-28, score=120) genbank/nr: gi|38489222|gb|AAR21296.1| NDR1-like protein [Nicotiana benthamiana] (evalue: 8e-75, score=282)">
      <seq>aatattaatgtcatcgttctccaattgctgaaaaccccaaaacatgtctgaccatacatgttgttatcgttgcaccaaattcatattaactgcaggcttaacagctctctttatctggctaagtctaagaacctcaaaaccatcatgctctttacataatttttacttacctgcccttaacatatctgatcattcgaacaccacaagatccaatcatactctgtattttcagctcaatttgaacaacaagatgaaggacaaaggtgttcgttacgacgagattatattaagcttcttctactatggtacaaatacaagtatcccaattggtaatagcacaataaatggattttaccaaggccatgacaagaaagcaaagaaaaaagggaaactggaaattcagaaaatggcttgggatgctgcttttaagaatgttacaaatacatcaaaagtgatttttagggtggatttggctacaagaataagctacaagactattttttggtttagcaagaaacataattttactgtggaaaatagaacaatggaagtggatagtacaggtaaatcaagtgcacaacacattcattgctattttatggttttaggttttcctctaattgttttggttagcttgattcttttgttgtaaataaatgactggcactattcaactcaatattttcttccttttggtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108904" stop="107604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108604" g_stop="107905" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U328138" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108604" e_stop="107905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTAATGTCATCGTTCTCCAATTGCTGAAAACCCCAAAACATGTCTGACCATACATGTTGTTATCGTTGCACCAAATTCATATTAACTGCAGGCTTAACAGCTCTCTTTATCTGGCTAAGTCTAAGAACCTCAAAACCATCATGCTCTTTACATAATTTTTACTTACCTGCCCTTAACATATCTGATCATTCGAACACCACAAGATCCAATCATACTCTGTATTTTCAGCTCAATTTGAACAACAAGATGAAGGACAAAGGTGTTCGTTACGACGAGATTATATTAAGCTTCTTCTACTATGGTACAAATACAAGTATCCCAATTGGTAATAGCACAATAAATGGATTTTACCAAGGCCATGACAAGAAAGCAAAGAAAAAAGGGAAACTGGAAATTCAGAAAATGGCTTGGGATGCTGCTTTTAAGAATGTTACAAATACATCAAAAGTGATTTTTAGGGTGGATTTGGCTACAAGAATAAGCTACAAGACTATTTTTTGGTTTAGCAAGAAACATAATTTTACTGTGGAAAATAGAACAATGGAAGTGGATAGTACAGGTAAATCAAGTGCACAACACATTCATTGCTATTTTATGGTTTTAGGTTTTCCTCTAATTGTTTTGGTTAGCTTGATTCTTTTGTTGTAAATAAATGACTGGCACTATTCAACTCAATATTTTCTTCCTTTTGGTTTC</genome_strand>
        <mrna_strand>AATATTAATGTCATCGTTCTCCAATTGCTGAAAACCCCAAAACATGTCTGACCATACATGTTGTTATCGTTGCACCAAATTCATATTAACTGCAGGCTTAACAGCTCTCTTTATCTGGCTAAGTCTAAGAACCTCAAAACCATCATGCTCTTTACATAATTTTTACTTACCTGCCCTTAACATATCTGATCATTCGAACACCACAAGATCCAATCATACTCTGTATTTTCAGCTCAATTTGAACAACAAGATGAAGGACAAAGGTGTTCGTTACGACGAGATTATATTAAGCTTCTTCTACTATGGTACAAATACAAGTATCCCAATTGGTAATAGCACAATAAATGGATTTTACCAAGGCCATGACAAGAAAGCAAAGAAAAAAGGGAAACTGGAAATTCAGAAAATGGCTTGGGATGCTGCTTTTAAGAATGTTACAAATACATCAAAAGTGATTTTTAGGGTGGATTTGGCTACAAGAATAAGCTACAAGACTATTTTTTGGTTTAGCAAGAAACATAATTTTACTGTGGAAAATAGAACAATGGAAGTGGATAGTACAGGTAAATCAAGTGCACAACACATTCATTGCTATTTTATGGTTTTAGGTTTTCCTCTAATTGTTTTGGTTAGCTTGATTCTTTTGTTGTAAATAAATGACTGGCACTATTCAACTCAATATTTTCTTCCTTTTGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326915" ref_strand="+" ref_description="SGN-U326915        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT5G54780.1 | Symbol: None | similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:At4g27100.1); similar to putative GTPase activating protein [Oryza sativa (japonica cultivar-group)] (GB:XP_468334.1); contains InterPro domain RabGAP/TBC domain (InterPro:IPR000195) | chr5:22265673-22269089 REVERSE | Aliases: MBG8.4, MBG8_4 (evalue: 5e-53, score=204) genbank/nr: unknown(evalue: 4e-51, score=204)">
      <seq>gagacattaggtggaggaaattacgtgtcgcttttcggatgctcatggttatgttccgtcgagaattttctttctctgattcgttatatctttgggagatgatgtggtctctggaatatgatcctgagttattttccatgtatgaagaagaccctgacttgactgctgaaaattctagacgagcaaaagttaagtcgatacgtcagtatgggaaatatgagagagaaaacatgagaagtggaggtaaagatacagaagctcccctcccaatttctgttttcctagtagccagcgtcctgaaggacaagagtgcgaagctaacagaagctagaggactggacgaagttgttaagatcctgaataatattactggacacttggatgccagaaaggcttgcagtagcgctatgaagcttcacaagaagtatcttaagaaggcagccaacactaataggtagtcgagcagaggcgagtactatgtaatattctcactgaacttaacgacaacatcttctcgttgctggccaagaaggtatgacaagaatctatatttatatattttgggctggtcgatgaacattagctgcttttgctattgtagttatgttatgatgtgctaagacgtaattgttgtattcaatccaaatgtaatgtacaaggacacacttccaaagtttgtactataatctcaggaacaaaacaatgttccatatttgtaagggatagcttcaaatatattataataaatatactcatgtttttatagaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="110582" stop="3964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110282" g_stop="110184" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110183" i_stop="110070" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.609" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110069" g_stop="109815" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="353" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109814" i_stop="109633" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109632" g_stop="109549" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="437" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109548" i_stop="109450" i_length="99">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109449" g_stop="109112" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="775" r_length="338" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109111" i_stop="108678" i_length="434">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108677" g_stop="108648" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="805" r_length="30" r_score="0.633"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U326915" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110282" e_stop="110184"/>
          <exon e_start="110069" e_stop="109815"/>
          <exon e_start="109632" e_stop="109549"/>
          <exon e_start="109449" e_stop="109112"/>
          <exon e_start="108677" e_stop="108648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACATTAGGTGGAGGAAATTACGTGTTTGCTTTTCGGATGCTCATGGTTATGTTCCGTCGAGAATTTTCTTTCTCTGATTCGTTATATCTTTGGGAGGTAAGACTCATCTCCTGATATTTTTTCCTGATCTGAAGCTGTCATTTAAGATGGCTTTGCAATTGGACGCGTGTGAAGCCACTAGCAAATTCTAAATCTTTTGTTTGCCAACAGATGATGTGGTCTCTGGAATATGATCCTGAGTTATTTTCCATGTATGAAGAAGACCCTGACTTGACTGCTGAAAATTCTAGACGAGCAAAAGTTAAGTCGATACGTCAGTATGGGAAATATGAGAGAGAAAACATGAGAAGTGGAGGTAAAGATACAGAAGCTCCCCTCCCAATTTCTGTTTTCCTAGTAGCCAGCGTCCTGAAGGACAAGAGTGCGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAGGTTGGTTTGACAATTACATAATTAGGTGCTATGTCTTCGTTACTTCTGTTTTCTCCTTTTAAATCCTGCTTTGATATGTTTTTACTTGAGTTGATGGTCTTTTAGAAACAACCTCTCTATTAGGATAACGTCTGTGTACACTCTACCTTCTCCAGACATCATCTTTTGCTTATTATTTTCAGATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGCTATGAAGCTTCACAAGAAGTATCTTAAGAAGGTAACCTTTCCTATTGACGGATAAATGAAAACGTGTGTTAGCAAGATTACATTTCAAAAGACGGATTTCATTTATAAGTTCATCTACTGGTTAAAACAGGCAGCCAACACTAATAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCACTGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTTATATATTTTGGGCTGGTCGATGAACATTAGCTGCTTTTGCTATTGTAGTTATGTTATGATGTGCTAAGACGTAATTGTTGTATTCAATCCAAATGTAATGTACAAGGACACACTTCCAAAGTTTGTACTATAATCTCAGGAACAAAACAATGTTCCATATTTGTAAGGGATAGCTTCAAATATATTATAATAAATATACTCATGTTTTTATAGACATTATAAATAGTCTAAAGTTATAGAAAGTACATATTGACGACTATATATTATGATAGACTAAAAAAAACAAAAGCAAATACAACTTATCTATTTATATTATTATGATACACTCAAAAAGTTAGAATATAACTTAACTTAAACACTGATTATTTAATTTCGATCGATTCAGAATCTCCTCTAAACCATCTCAAATTTTTAGATATAAAATCTTCAATATTTCGAATCTTTTGGTAAACATGGCAAAATTAATTTTCTTTGAAACTAATCCCTCTAATATAATGTCACAATGAGAGTAATAATAATAATAATATAAAAGAATTAAACCCCACTTCTCCTACCCCATTATTGGCTGACCCCTTGCCATTGACCTCAAAGACTTGAAGGTTTTCAATTGGGTGAGGAGGTGCTCTCACATACTCATTTATAAAAGCACTTTTGCCAAAAAGCAAAAAAAAATGGATTTTTCCCAG</genome_strand>
        <mrna_strand>GAGACATTAGGTGGAGGAAATTACGTG-TCGCTTTTCGGATGCTCATGGTTATGTTCCGTCGAGAATTTTCTTTCTCTGATTCGTTATATCTTTGGGAG..................................................................................................................ATGATGTGGTCTCTGGAATATGATCCTGAGTTATTTTCCATGTATGAAGAAGACCCTGACTTGACTGCTGAAAATTCTAGACGAGCAAAAGTTAAGTCGATACGTCAGTATGGGAAATATGAGAGAGAAAACATGAGAAGTGGAGGTAAAGATACAGAAGCTCCCCTCCCAATTTCTGTTTTCCTAGTAGCCAGCGTCCTGAAGGACAAGAGTGCGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAG......................................................................................................................................................................................ATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGCTATGAAGCTTCACAAGAAGTATCTTAAGAAG...................................................................................................GCAGCCAACACTAATAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCACTGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTTATATATTTTGGGCTGGTCGATGAACATTAGCTGCTTTTGCTATTGTAGTTATGTTATGATGTGCTAAGACGTAATTGTTGTATTCAATCCAAATGTAATGTACAAGGACACACTTCCAAAGTTTGTACTATAATCTCAGGAACAAAACAATGTTCCATATTTGTAAGGGATAGCTTCAAATATATTATAATAAATATACTCATGTTTTTATAGAAAAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322957" ref_strand="+" ref_description="SGN-U322957        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: AT5G54780.1 | Symbol: None | similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:At4g27100.1); similar to putative GTPase activating protein [Oryza sativa (japonica cultivar-group)] (GB:XP_468334.1); contains InterPro domain RabGAP/TBC domain (InterPro:IPR000195) | chr5:22265673-22269089 REVERSE | Aliases: MBG8.4, MBG8_4 (evalue: 1e-105, score=379) genbank/nr: TBC(evalue: 1e-108, score=395)">
      <seq>cttgttgttgaaattcttgatcaaagttgttggtattgaattttagatttttgaggagtttccaaagtaacaaagtttgaagcatgtggaggaactatggagcttctgctgattcattttatcaggtccgtcctgaatgtgctgatgatgttcctgaaaccaagtttagaatcaaggttgggaaaactttaagttcaagaagatggcatgctgcatttacccccgaaggttatcttgatataggcaaaatacttggtcgagtttgtcgtgggggaatccatccatcaattagaggtgaagtttgggagttcttactgggctgttatgattcaaagagcacatttgaggaacgagagcaattacgacaacgtcggagggtacagtatgcagcattgaaagaagaatgtcgtgggatgtttcccttaattggaagtggtcggtttatttctgcacctgtaatcactgaagatggtgaccctattctagatcctatagttcttcaagagttaaatgcggcaaaagaaccaacttcagctggtcaagttggtccatctgatggttttgaattggtgaaggagcatgacaaaaaagtaatccagtggaaactctcattacaccagataggattggatgtgattcgtactgaccggacccttgtcttttatgagaaacaagagaatctatcaaagctttgggatattttggctgtttatgcttggtttgacaaagaagttagttattgtcaaggaatgagtgatctttgttctcccatgattattctacttgatgatgaagcagatgcattttggtgctttgaacgtatgatgaagagactgagaaaaaatttcacagctactgggaactctgttggagtggaggcgcagctaacttatctagcatcaataactcaagttatcgatcccaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="115096" stop="110111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114796" g_stop="114672" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114671" i_stop="114596" i_length="76">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114595" g_stop="114545" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="176" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114544" i_stop="112756" i_length="1789">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112755" g_stop="112660" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="272" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112659" i_stop="112432" i_length="228">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112431" g_stop="112328" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="376" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112327" i_stop="111970" i_length="358">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111969" g_stop="111800" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="546" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111799" i_stop="111681" i_length="119">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111680" g_stop="111603" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="624" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="111602" i_stop="111385" i_length="218">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111384" g_stop="111262" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="747" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="111261" i_stop="110809" i_length="453">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="110808" g_stop="110720" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="836" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="110719" i_stop="110503" i_length="217">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="110502" g_stop="110411" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="837" r_stop="928" r_length="92" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U322957" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>928</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114796" e_stop="114672"/>
          <exon e_start="114595" e_stop="114545"/>
          <exon e_start="112755" e_stop="112660"/>
          <exon e_start="112431" e_stop="112328"/>
          <exon e_start="111969" e_stop="111800"/>
          <exon e_start="111680" e_stop="111603"/>
          <exon e_start="111384" e_stop="111262"/>
          <exon e_start="110808" e_stop="110720"/>
          <exon e_start="110502" e_stop="110411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTGTTGAAATTCTTGATCAAAGTTGTTGGTATTGAATTTTAGATTTTTGAGGAGTTTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAGGTATTATACTGCAGAATATTTGTGCAGTATATTTATATATTTGTTTTTATTTTTCTAACTGTATATTTATTGATAGGTCCGTCCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAGGTAATTGGTATTTTTCTAGACACATACTATTAGTTAGATGAGTACAACTAATTTAAATGTTTGTTGTAATTTTAGTAGATTTTTGTATTTAAGTTTATGTTGTCTTGATCTGTTATGGTAAAGGCTTGAATTTTATTTATGATTTTGAGATTATAAGAGATGCAAATGTTTGGAACAATCATTTTGATTGATACCATTTACATTTTTAAGTTATAAATAAATGAATTCTGTCTTTATGAATCCATTTTTGTCAACATACAACAACATCAAAGCCTCAATCACAACTGATTTTGGGGCTATATAAATCCTATATCCATTTTTGCTCCATCTGAAGTTGTTCCATTCCAATATATAATTTGAGTTTTCTCTACATATTTTACTTACATTCTAATCTCTGCCGGGATTAAAAGGACTCTTAGCTAGTATTGCAGCTCATATAAACTCACCGACATGTCCAAACCTTAATTCCTAAGATTATATGGAAGGCAGTTGAGTTTTGATGTTTGTATTCCAGAAGCTGCTCCCTGCTAGTCAAATCTCCTATCCATCGGTTCCTATAATCTTTTTAAAGAATATTTGGGTCTTCTTGATTATTTGATCGAGATGACTCTTCCCTAGTTAGTAGCAGGTGAGGAACATTTCACGAATTGCTGACATAATCTCTAGAAAAGATCATTAATTTGTCAATTATTTTGGTTGTACTATTATAGGTGTGAATTAACAACAACAACTACTATTACAAGTCTACGACTCAAAACCAAGCAAGTTGGAGTCGGCTATACGTATCATCACTGTCCATGTTGCTTCATTTAAGCTCATCTTAGCTAGTCTATGGTGAATAATCCTAACAATACTGAAAACAGGTGGCGGGAACTAGTCTAGAATTTCTCCCGTTACAACACTTGCTGTTTTTTTCCTCTACTTAAATGGTGTAGACTGATTTCATGATTGTTCATAAGTCTAAACTTGAGCATTTTGGGCGATCTGAAATTTACCTATCAGGGGCAAGGATAAAGCCTTTGCCCCCCTTCCCAAAATCCTGTGTAAACATGGAATAATGAGGATACAAAAATATTATGAAGGGGATGACAAGAAATATAATAACAGAATAAAAGAAGAATTTGTTACCATTTTAACTACTATTATTTTTAGTTGTATGAAAAGAAATTGTCTTTTCTGTTTACCACCAGAACAAACTGATATTAATTCATAAAATGAGGGTCTGATAATACATCAATTTTTTATAAGATTAGCTAAAAATTGTATTGATATTTTATTACTATAATTGTTGGATATGTTCTACAACATTGAATAAGATTATAAATGATCATAGATAGAGTCGCAAGTAATGTGAAGATAAAGGACAAAATTAGAGAAGGTCACCTGAGATGGTTTGATCATGTCCCATATAGACTTCAAATTGTATTGATGTATAGGTGCGACACTGATCTTAGTTGTTGTTACAACAACTAAGACTCCCAAATATCTAACCATCTTAGCTGTTGTTACACTTACATAAGGTTTGGCATTAGGAATGAATTTTGTTAAAAACTTGTGTGTCAATGTAAAGATAATTGTGAGATTTGAAAGAACCTCTAGTTTTAGATAACTCATGATTTACTCTGTAATGAATGAACTCGGTAGACTGTGAAGGAAGGGCATTCATATAATGACCTCAACTTGGTTTGGAATTGATGTGTAATTAATTGATGGCTTGAATTGAATCCTTGTCACCCTTCATTTCTAATGTTTTGCCTCATATTTATTATCTAATAATCTACTTATTCAGGTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGGGTAAGGTTAGCTTCATGATTTGTAAGTTACTTTCGGTTTATGTGCCAATATGATTCAGGAATATTGCAATTCTGCATTTTTATCATTTTTACTGTTTGTTTGATGTTTTTTCTGTGTGGGACTAATTAAAAGAACTTGTGACATAATCCTAGTCTTTATAAGTATTTCATGTAAGTTCATGCATCAGCGTAACAGAATGTTTAGTATTCGAGTATTTGTGGCTTTTAGGGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAGGTATTTTACTTTCCTTACTAAGCAAATATAAATATATCCAGGCAACAATTAATTTTTTTCAAACTGTATGCTTCATCATCCTAAATTAGTTACTCGAGTAGAATTACAATAGAAGTTGTTGTTGGAGGTGACTCCAACATGTTTGTTTTCAGCTGCTTGCATGAAATTTTTATGCTCAGTGGTTTCCATAGCTTCATATCTGAAGATTTACCTTTTGCGAATTTTGTATCTGTGGTTCGGCAATAGACAAATACATTCTCATGTGAAATTTGATAATACTTTGCCATTCGACAGTATATATCAATACCTGATCCATATCAAAATCACATTCTCAACGCACATTTCTTGTATGCATCAGGGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTGGTCGGTTTATTTCTGCACCTGTAATCACTGAAGATGGTGACCCTATTCTAGATCCTATAGTTCTTCAAGAGTTGAATGCGGCAAAAGAACCAACTTCAGCTGGTCAAGTTGGTAAATACTTAATATGTTCCCCAAGTAGTGTGATTTCTCTTTCTCTTCCTTTCTGATGGAAGGGCTCTTGGATGCTGTATAAAGTGACGATCGTTTTTTTGGACATCGTGCAATTACAGGTCCATCTGATGGTTTTGAATTGGTGAAGGAGCATGACAAAAAAGTAATCCAGTGGAAACTCTCATTACACCAGATAGGTCGGTTATGTATACAGATTGCATGCACTTGTTTCTTATCATGCCAATCTATGTTTTTAATTCATCTGTTCTCCGGTTTTGGCAAGTCGAGTATTGGCTTGGGATGTACTATGGATTTTTCTTATAAATTTGGCAATCACTTCCTTCTTCTTTATTATCAAATTTAATTTCTTTATCTGTATGTTACATCTTTCCATCCTTGTTCATATTTATGCTAGGATTGGATGTGATTCGTACTGACCGGACACTTGTCTTTTATGAGAAACAAGAGAATCTATCAAAGCTTTGGGATATTTTGGCTGTTTATGCTTGGTTTGACAAAGAAGTTAGTTATTGTCAAGGTGAGTTATTGTAGTATCTTCTTAAGATAATTCTTCCAGTATTTTGGCTTCTGAAGTAGACTAAGAACTCATGTTTGTGATACTAGTTTGAATGTTGTAGTTTCTACTTATATCTCGTCTTTGACTTAATACCATGCACTATGCTAAAGTTGACGATAAGTTCTAATTGCTCAAGTTTGTGTACACTCAAAATTTCTACGCTAAATGTTCAATTCATAAATTATTCTTGTAAGGGAAGATATCCATTTATTACCAATTGTCCTTTTGTGTCTTTTCTCACGCCGGCGTTAATATTTTTGTCAATGTCAGGATTAACTTTATTTCCATGGGGAAATAATCCCTTTTATTTCCCTTCCTATCCAGTATTTCCTTATACATGATCGCAAGTTTATCTCTTATTTATTGCTTCTAGTTTGTGCTGAAACTATTTTAACATTTGACTATGACGAACAGGAATGAGTGATCTTTGTTCTCCCATGATTATTCTACTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAACGTATGATGAAGAGACTGGTACATAACTTTACTCGGACTGCCTGTTTATAGTTGTGTAAATTGTAATTATCATGAATACCCGCATCATTTCATAACAGAATTTGTTTGGTTACCTCAAGTTGAATTCCAGTAACACTAATTTGTGTTCATCGATCCTTTCTATATCTAGCCTTGCAATTCCTTAGATTTTTGTAACTACTGTGGCTAATACGAAATGTTCTGTGCATTTTTAAAGAGAAAAAATTTCAGAGCTACTGGGAACTCTGTTGGAGTGGAGGCGCAGCTAAGTTATCTAGCATCAATAACTCAAGTTATCGATCCCAAACT</genome_strand>
        <mrna_strand>CTTGTTGTTGAAATTCTTGATCAAAGTTGTTGGTATTGAATTTTAGATTTTTGAGGAGTTTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAG............................................................................GTCCGTCCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGG....................................................................................................................................................................................................................................GGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAG......................................................................................................................................................................................................................................................................................................................................................................GGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTGGTCGGTTTATTTCTGCACCTGTAATCACTGAAGATGGTGACCCTATTCTAGATCCTATAGTTCTTCAAGAGTTAAATGCGGCAAAAGAACCAACTTCAGCTGGTCAAGTTG.......................................................................................................................GTCCATCTGATGGTTTTGAATTGGTGAAGGAGCATGACAAAAAAGTAATCCAGTGGAAACTCTCATTACACCAGATAG..........................................................................................................................................................................................................................GATTGGATGTGATTCGTACTGACCGGACCCTTGTCTTTTATGAGAAACAAGAGAATCTATCAAAGCTTTGGGATATTTTGGCTGTTTATGCTTGGTTTGACAAAGAAGTTAGTTATTGTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGTGATCTTTGTTCTCCCATGATTATTCTACTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAACGTATGATGAAGAGACTG.........................................................................................................................................................................................................................AGAAAAAATTTCACAGCTACTGGGAACTCTGTTGGAGTGGAGGCGCAGCTAACTTATCTAGCATCAATAACTCAAGTTATCGATCCCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319608" ref_strand="+" ref_description="SGN-U319608        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | electron transfer flavoprotein alpha subunit family protein, contains Pfam profile: PF00766 electron transfer flavoprotein, alpha subunit | chr1:18881480-18883638 REVERSE | Aliases: F8A12.16, F8A12_16(evalue: 5e-120, score=428) genbank/nr: gi|15223680|ref|NP_175507.1| electron transport flavo protein -related [Arabidopsis thaliana] gi|25282839|pir||E96546 probable electron transport flavoprotein [imported] - Arabidopsis thaliana gi|12321799|gb|AAG50941.1| electron transport flavoprotein, putative [Arabidopsis thaliana] gi|26450117|dbj|BAC42178.1| unknown protein [Arabidopsis thaliana] gi|28827356|gb|AAO50522.1| putative electron transport flavoprotein [Arabidopsis thaliana](evalue: 4e-118, score=428)">
      <seq>ggttatggaataaagaaggtttctaattgagagagagtagacgataatggagttgctgggaggaagaagagcaatcaattgataggttttggtgtgagaaagatagagacgccacgctgaagagatatatacagacacggcagacgccattattaatttatattagtagtaataatctttaatactccataaggactgacatttttgacccaaaataccacaagttgaagcgagcgaactggatatggccattggaacgatgctctccttattcagaaaactctctaatacttcacggataaccccttttcgatctcttagtacattggttttagctgaacatgaaggaggattaatcaaaaactcatcattaagtgctgtggaggctgcaaaatccttaggtggggacaattcgatatcgttgctacttgccggatctggtcattccctgaaggaagctgcggaacatgctgcttcatcccacccttccgtttctcaggtccttattgctgattctgacaaatttacataccctttggctgaaccatgggccaaattagtccatcttgttcagcagagtggtggctattcacacataattgctgcatcaggttcatttgggaaaaatatattaccgcgtgcagcagctcttctggatatttctccaattactgatgtcacaaagatttctggatcaaacctctttattaggccaatatatgcaggaaatgctctttccactgttcgttacacaggttccagcccatgtatgttgagcattagagctacatcttttcctgttgcttcagaaacagctgatttgaaatctaatgctgcgtcaatagatcaagttgatctttcaaccttggatgaagatgagtcagttgctaagtcgacatatgtaaagctttccgcgcaaatttcggagcgcccagatcttggaaatgcacgtattgtagtaactggtggacgaggtgtaaagagtgctgagaacttcaaaatgatagataagcttgcagagaaaatcggtgccgcagttggtgccactcgtgctgcagtggatgctggatttgttcccaacgatctccaggttggccaaactgggaaaattgttgccccagaattgtatatggcatttggtgtttctggtgcaattcaacacatagcaggcatgagagattccaagatcattgttgctgtaaataaagatgcagatgcccccatattccaggttgctgattatggactcgtgggtgatctcttcgatgtcattccggagttgttagagaaacttcctgagaaaaagtagaaaatacacaggtctctgtgatccaataaagatgaagatgatgtatgtggtggatgacatttgttatccaggaataatataatactaatatcattcattatttcnnnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanntccgggggggggggccggccccccccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="119335" stop="124913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119634" g_stop="119949" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120959" g_stop="121141" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="499" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121142" i_stop="121982" i_length="841">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121983" g_stop="122194" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="711" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122195" i_stop="122744" i_length="550">
            <donor d_prob="0.572" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122745" g_stop="122908" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="875" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122909" i_stop="123058" i_length="150">
            <donor d_prob="0.021" d_score="1.00"/>
            <acceptor a_prob="0.203" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123059" g_stop="123220" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="876" r_stop="1037" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123221" i_stop="123393" i_length="173">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123394" g_stop="123446" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1038" r_stop="1090" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123447" i_stop="123765" i_length="319">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123766" g_stop="123906" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1091" r_stop="1231" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123907" i_stop="124431" i_length="525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124432" g_stop="124614" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1232" r_stop="1414" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1456" polyA_stop="1476"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U319608" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1414</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119634" e_stop="119949"/>
          <exon e_start="120959" e_stop="121141"/>
          <exon e_start="121983" e_stop="122194"/>
          <exon e_start="122745" e_stop="122908"/>
          <exon e_start="123059" e_stop="123220"/>
          <exon e_start="123394" e_stop="123446"/>
          <exon e_start="123766" e_stop="123906"/>
          <exon e_start="124432" e_stop="124614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTATGGAATAAAGAAGGTTTCTAATTGAGAGAGAGTAGACGATAATGGAGTTGCTGGGAGGAAGAAGAGCAATCAATTGATAGGTTTTGGTGTGAGAAAGATAGAGACGCCACGCTGAAGAGATATATACAGACACGGCAGACGCCATTATTAATTTATATTAGTAGTAATAATCTTTAATACTCCATAAGGACTGACATTTTTGACCCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCTGTAAGTCCCTGTTGTTCTTACGCTTTTCAAATTTTATTTTCACTCATCTGAAATAGTCTGAACAAGTCGAAAAGGTAATTTCAATTTGCTTTTCTGCATTTATATGCTTGATAAGGGCTCCGAGGAATCGGCCGGAGCTATCATTCCGATGACGGGTTTGGTAGAATCCAATAGCTTATGTTTAAGAATCCAATTAACTTTTTTTATTTATTTAGAATCTGGAACCCATAAAAAGGTAGTTGGGACAAGTGATTTAGGTTGAATGCTTTAGCTCAGACATGGTGGTTTTAGTGTGTAAAGGAATAAACAGAATAGTTGGTACTTGATGAATCTTCTGAAATTGGGAAGAACAAGAACAAACGTATGTTGCACTTGTTTGTGTTGATTATTGGAAGATAGAATAGGAAGGGGATTATTTTCTCGAATCAATAGCTTAATTAAGAGCTGAACAAATACGTTCTTCAACTTTAATCTTACTTCTCTTCGTCCGTTCCTTATATTACTGCAGCAAAATATTCTGTATTGTTCTTGTACAGCTTAATTGCAGTTTACCCAAGTGAGTTTTATCAGAATACTAGGCTAAGCATTAAATCAAATGCAAGTGGGTCAGGAATTGTCTTTCGAGTAAATGAGGAAGTTAAAGGGATATGATGCAACAACAAAATGCCTAGTGTAATCCCACAAGTAGGATCTGGGGAGGGTAGGATGTACGACCTTAACCCTTACTGTTTCTGGTGCAATGGTTTGATTATATAGGCTTGCTTTGTGATATCTCTAGTTTCTAAAGATTCACATGAATTGAGAATAGGTGTTTTCGAATGTTCTTGTTTAAGGAGGACAAAGGAGAATCTCTGAATAGTCTCTGTGTTTGATAATCATATAGCCTGAATCCATGTATACAAGTTTGAGCTTGAATTTTATAATAGAAGAATTCTGCTTCTTTGCACAATATAAGTTATTCTCAAATGATTGTGCTTAAAGGTACACCTATGCTGTATTGTATGTGTAGCTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTTTTGGAGAAAGTGGTATAGAACCTATTTGTTTGGATTTTCTCCACATAAGATACACAGATATCATATGAATGTGTGTCTATTAACAGGAAAAGTAGTCCATAGCTCATGCTGACAATACAATGCTGCTCCTTTCCTCTTCATCTTCAATTAAGCTATTGTGAGGACCAAGCACGCTACCTGTTATGAGTCTTTGTTCAAAGATTTTATGATTTTCATTCCAATGCTTCCATGTGATGTGACATGCTAGTTGACAATTTGAAATTAACTTAATTCAAGCATTCTGCACTTAGCATTTTGAGACAAATAATCTGTAACTAGCATTTAGAATAGATAAAGCAGTCAGCACACAAGAGAAAAAGATGCTGGAGCGAATGAAACTCACTATTTTCTTATTGTTTTTTATTTCTTCTTTAGGTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAGGTGATTTTTTAGTGGTAACCTTATCCGGAGAACACTACAATGGATTGAGATGTTCTTGTAGATAGTGAACACTTTTTTCAAGCGATTTTCCTAAACTATTTCCTGTCATGTGTGATTTGTAATATTGAGACATTGGCATTAGTTAGCGCTATGTTAAATGGTAAGTTTCCTGTTATTAGGTCTGATATACATGTTATTATTACATCTTGTTTCGTGACTATGACCATTTTATATCATGTTTGTTTTATGACATGAAGAATGTACTTTGGGTCTTTAAAAATTGTACGTTTGTGTAAAACTAGTTGTTATATGGCAATATCGTCCAGGGATGATTATTTCTGGAATTCTGTTAGCTGTAAAGTTGCTAACTTCTTCATAGAGTTATTTTGGAAATCGTAGAACTACAGTGTTTACTATTTTTTTTTAACCACTATAATGCATCCTGCTACAAAATGAGATCTTTTCTTACAGTGACTGCGTCATTCGTTTTGTCTTCTCAGCTCCAGTGTAAGCTGTGTTGGTTTTAATTGGATCATCTTTAATGTGACAGGCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAGGTCAGTCAGTTGTGATATGAACCCATATCTCCCGTGGATAACCAGATGTGTCTCTTTATGCCAATCTTGTCGATAAACGTCAGTTGTTTGCATCTTTTGTAAATAAACGTCAGTTGGTTAGAACCTAAAATGAGGTAGCTTTTTTTACAGATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAGGTAAGACTAGACATACTTGTTGCTTCAGGTGACTCAGTTACTTGCCTTCAGAAAAGTTGAATGGATTTTCACTTACGTAAACTGTAGTAACCTGTTACCTGTAATATCTTTTCTTTCATCTAAGCAAGTTATATCTATGGTATAACAAGTCAGACACAAAAAAATTGTGAAGTAAAATACTTGAAATGGTATTGAAGTAGTAGTGTCTGTCTCTCTGAAATTTTGTTTTCAAGAAACTGGAACTATAATGCAGCCCTGCCATTTTTCATGTTTGTCAGTTTTTTTGAATGTAGTTTTTGTTTTTCCTTCTCTATTTTAGGTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAGGTAAGGGTCAATCTTTCTATTCTCTCTCATGTCCTTTTCTCGCTCTTATGTTAATTCACATAATCAAGAGGGAGGGTGATGGAGACACAAACTCATTGGTTTACTTTTGATGGAGTTCTGATTTATCAATTACATTTCCGATAAGTAAAATAATTTATTTATTATCAGTTATCAGGAAGTAAAACAGAACATATTTCTTTGAAATTTTGGAGCAACTTAAGAAGTTGACGTAGTGAACATGCGGCATGTCACATGCCATCCAATTTTACCTCAGCTAGAAATGGAAATTAATAACCCTCATCTCACCTAGTTATTTATGTTAGAGTGAGTTAGAGTCCCACGTTGGTTAGTGAGCAGATTGGTGTCTCCTTATAGGGATGCAAGCAACTTCTCCCTTCATGACCTACATTTTGGGATTAAGTTAGCCTCAAATGCCATCTTACATGGTATGAGAGTTAAGTCGTCCCGCTCTAGAAGTTGACATATGGAATCCATATTGAAAACGTTGCTTTCATTGAACTGCAGGTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATTTCA</genome_strand>
        <mrna_strand>GGTTATGGAATAAAGAAGGTTTCTAATTGAGAGAGAGTAGACGATAATGGAGTTGCTGGGAGGAAGAAGAGCAATCAATTGATAGGTTTTGGTGTGAGAAAGATAGAGACGCCACGCTGAAGAGATATATACAGACACGGCAGACGCCATTATTAATTTATATTAGTAGTAATAATCTTTAATACTCCATAAGGACTGACATTTTTGACCCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAG......................................................................................................................................................ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAG.............................................................................................................................................................................TTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG...............................................................................................................................................................................................................................................................................................................................GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATTTCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336878" ref_strand="+" ref_description="SGN-U336878        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | electron transfer flavoprotein alpha subunit family protein, contains Pfam profile: PF00766 electron transfer flavoprotein, alpha subunit | chr1:18881480-18883638 REVERSE | Aliases: F8A12.16, F8A12_16(evalue: 2e-11, score=66.6) genbank/nr: gi|15223680|ref|NP_175507.1| electron transport flavo protein -related [Arabidopsis thaliana] gi|25282839|pir||E96546 probable electron transport flavoprotein [imported] - Arabidopsis thaliana gi|12321799|gb|AAG50941.1| electron transport flavoprotein, putative [Arabidopsis thaliana] gi|26450117|dbj|BAC42178.1| unknown protein [Arabidopsis thaliana] gi|28827356|gb|AAO50522.1| putative electron transport flavoprotein [Arabidopsis thaliana](evalue: 1e-09, score=66.6)">
      <seq>caaaataccacaagttgaagcgagcgaactggatatggccattggaacgatgctctccttattcagaaaactctctaatacttcacggataaccccttttcgatctcttagtacattggttttagctgaacatgaaggaggattaatcaaaaactcatcattaagtgctgtggaggctgcaaaatccttaggtggggacaattcgatatcgttgctacttgccggatctggtcattccctgaaggaagctgcggaacatgctgcttcatcccacccttccgtttctcaggtaactcctctttggatgctggactgttttgtttcaccatgtttcccacggaatactaaccttatgctcctactggttttgcaatttagtttgctcgcttttcagtaacatcttggctaggacatccctagttcagtgtgaaaaagagtagttgtattctattgacatacttaagtgattgtgtaaaacacatttacaatgttcacttcgttacagagagagaatgatcttccgaggaggagaaaagagaggatgatattgctttttctctgtcttcttgtactaaaattcttggaaatgccattttcaactgagtgctgaactttggcaagcaagccatagaacaaaatccaggaacgatgataggtgatcttgtcaagagtatccaaagtatacctgttaactcttactcacaatattatcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="119544" stop="121868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119844" g_stop="119949" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120959" g_stop="121568" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="716" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U336878" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119844" e_stop="119949"/>
          <exon e_start="120959" e_stop="121568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCTGTAAGTCCCTGTTGTTCTTACGCTTTTCAAATTTTATTTTCACTCATCTGAAATAGTCTGAACAAGTCGAAAAGGTAATTTCAATTTGCTTTTCTGCATTTATATGCTTGATAAGGGCTCCGAGGAATCGGCCGGAGCTATCATTCCGATGACGGGTTTGGTAGAATCCAATAGCTTATGTTTAAGAATCCAATTAACTTTTTTTATTTATTTAGAATCTGGAACCCATAAAAAGGTAGTTGGGACAAGTGATTTAGGTTGAATGCTTTAGCTCAGACATGGTGGTTTTAGTGTGTAAAGGAATAAACAGAATAGTTGGTACTTGATGAATCTTCTGAAATTGGGAAGAACAAGAACAAACGTATGTTGCACTTGTTTGTGTTGATTATTGGAAGATAGAATAGGAAGGGGATTATTTTCTCGAATCAATAGCTTAATTAAGAGCTGAACAAATACGTTCTTCAACTTTAATCTTACTTCTCTTCGTCCGTTCCTTATATTACTGCAGCAAAATATTCTGTATTGTTCTTGTACAGCTTAATTGCAGTTTACCCAAGTGAGTTTTATCAGAATACTAGGCTAAGCATTAAATCAAATGCAAGTGGGTCAGGAATTGTCTTTCGAGTAAATGAGGAAGTTAAAGGGATATGATGCAACAACAAAATGCCTAGTGTAATCCCACAAGTAGGATCTGGGGAGGGTAGGATGTACGACCTTAACCCTTACTGTTTCTGGTGCAATGGTTTGATTATATAGGCTTGCTTTGTGATATCTCTAGTTTCTAAAGATTCACATGAATTGAGAATAGGTGTTTTCGAATGTTCTTGTTTAAGGAGGACAAAGGAGAATCTCTGAATAGTCTCTGTGTTTGATAATCATATAGCCTGAATCCATGTATACAAGTTTGAGCTTGAATTTTATAATAGAAGAATTCTGCTTCTTTGCACAATATAAGTTATTCTCAAATGATTGTGCTTAAAGGTACACCTATGCTGTATTGTATGTGTAGCTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTT</genome_strand>
        <mrna_strand>CAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336879" ref_strand="-" ref_description="SGN-U336879        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | electron transfer flavoprotein alpha subunit family protein, contains Pfam profile: PF00766 electron transfer flavoprotein, alpha subunit | chr1:18881480-18883638 REVERSE | Aliases: F8A12.16, F8A12_16(evalue: 3e-37, score=152) genbank/nr: gi|15223680|ref|NP_175507.1| electron transport flavo protein -related [Arabidopsis thaliana] gi|25282839|pir||E96546 probable electron transport flavoprotein [imported] - Arabidopsis thaliana gi|12321799|gb|AAG50941.1| electron transport flavoprotein, putative [Arabidopsis thaliana] gi|26450117|dbj|BAC42178.1| unknown protein [Arabidopsis thaliana] gi|28827356|gb|AAO50522.1| putative electron transport flavoprotein [Arabidopsis thaliana](evalue: 2e-35, score=152)">
      <seq>cttggatgaagatgagtcagttgctaagtcgacatatgtaaagctttccgcgcaaatttcggagcgcccagatcttggaaatgcacgtattgtagtaactggtggacgaggtgtaaagagtgctgagaacttcaaaatgatagataagcttgcagagaaaatcggtgccgcaggttttccctctcccgtgacttctgctgtattcaccttgtgcttttttctgctacttctttatcctttatcaatctctccttaacatatttcaaattcttagcaataacttgcataattctgatttcaatctgctttgatttgatcattaaactggattacctctgttctgcagttggtgccactcgtgctgcagtggatgctggatttgttcccaacgatctccaggttggccaaactgggaaaattgttgccccagaattgtatatggcatttggtgtttctggtgcaattcaacacatagcaggcatgagagattccaagatcattgttgctgtaaataaagatgcagatgcccccatattccaggttgctgattatggactcgtgggtgatctcttcgatgtcattccggagttgttagagaaacttcctgagaaaaagtagaaaatacacaggtctctgtgatccaataaagatgaagatgatgtatgtggtggatgacatttgttatccaggaataatataatactaatatcattcattatttcaattctccaaccttattcacagaaaaaaaaagaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="122753" stop="124938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122898" g_stop="122908" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122909" i_stop="123058" i_length="150">
            <donor d_prob="0.021" d_score="0.00"/>
            <acceptor a_prob="0.203" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123059" g_stop="123446" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="399" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123447" i_stop="123765" i_length="319">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123766" g_stop="123906" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="540" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123907" i_stop="124431" i_length="525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124432" g_stop="124637" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="746" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="747" polyA_stop="765"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U336879" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336879" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="122898" e_stop="122908"/>
          <exon e_start="123059" e_stop="123446"/>
          <exon e_start="123766" e_stop="123906"/>
          <exon e_start="124432" e_stop="124637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGATGAAGGTCAGTCAGTTGTGATATGAACCCATATCTCCCGTGGATAACCAGATGTGTCTCTTTATGCCAATCTTGTCGATAAACGTCAGTTGTTTGCATCTTTTGTAAATAAACGTCAGTTGGTTAGAACCTAAAATGAGGTAGCTTTTTTTACAGATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAGGTAAGACTAGACATACTTGTTGCTTCAGGTGACTCAGTTACTTGCCTTCAGAAAAGTTGAATGGATTTTCACTTACGTAAACTGTAGTAACCTGTTACCTGTAATATCTTTTCTTTCATCTAAGCAAGTTATATCTATGGTATAACAAGTCAGACACAAAAAAATTGTGAAGTAAAATACTTGAAATGGTATTGAAGTAGTAGTGTCTGTCTCTCTGAAATTTTGTTTTCAAGAAACTGGAACTATAATGCAGCCCTGCCATTTTTCATGTTTGTCAGTTTTTTTGAATGTAGTTTTTGTTTTTCCTTCTCTATTTTAGGTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAGGTAAGGGTCAATCTTTCTATTCTCTCTCATGTCCTTTTCTCGCTCTTATGTTAATTCACATAATCAAGAGGGAGGGTGATGGAGACACAAACTCATTGGTTTACTTTTGATGGAGTTCTGATTTATCAATTACATTTCCGATAAGTAAAATAATTTATTTATTATCAGTTATCAGGAAGTAAAACAGAACATATTTCTTTGAAATTTTGGAGCAACTTAAGAAGTTGACGTAGTGAACATGCGGCATGTCACATGCCATCCAATTTTACCTCAGCTAGAAATGGAAATTAATAACCCTCATCTCACCTAGTTATTTATGTTAGAGTGAGTTAGAGTCCCACGTTGGTTAGTGAGCAGATTGGTGTCTCCTTATAGGGATGCAAGCAACTTCTCCCTTCATGACCTACATTTTGGGATTAAGTTAGCCTCAAATGCCATCTTACATGGTATGAGAGTTAAGTCGTCCCGCTCTAGAAGTTGACATATGGAATCCATATTGAAAACGTTGCTTTCATTGAACTGCAGGTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATTTCAATTCTCCAACCTTATTCACAGAC</genome_strand>
        <mrna_strand>CTTGGATGAAG......................................................................................................................................................ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG...............................................................................................................................................................................................................................................................................................................................GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATTTCAATTCTCCAACCTTATTCACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343202" ref_strand="-" ref_description="SGN-U343202        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:9341015-9342868 REVERSE | Aliases: DL4315C, FCAALL.400(evalue: 2e-19, score=92.8) genbank/nr: gi|42566875|ref|NP_193391.3| expressed protein [Arabidopsis thaliana](evalue: 2e-17, score=92.8)">
      <seq>ggaagttgtgattcatgctgtggaagctggctttgggccacaaatgacagctaaaaagatagcagcattggcacagcaaagagcaatggacacaactaagccgtcacctttctctgatgcagccaaagaggccggatttgagtaccaaggggggaaacttgatgacataactgtagttgtttcttatgtaactaacaatgccaatccattggcaaattgagccacaaactttaatgtttttgaagtaggactgtgactagcaattcgcctagtgatgcctccttgatccgtcaagtgttttagttaatagatttacagtacggaggcatgtctatatgttgtatacgatgacctaattgatacattgttcttgttgacattgatggatacaaagacactgttcttgaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="125594" stop="90242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125294" g_stop="124885" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124884" i_stop="124812" i_length="73">
            <donor d_prob="0.782" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124811" g_stop="124781" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="440" r_length="31" r_score="0.581"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U343202" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343202" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="125294" e_stop="124885"/>
          <exon e_start="124811" e_stop="124781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTGTGATTCATGCTGTGGAAGCTGGCTTTGGGCCACAAATGACAGCTAAAAAGATAGCAGCATTGGCACAGCAAAGAGCAATGGACACAACTAAGCCGTCACCTTTCTCTGATGCAGCCAAAGAGGCCGGATTTGAGTACCAAGGGGGGAAACTTGATGACATAACTGTAGTTGTTTCTTATGTAACTAACAATGCCAATCCATTGGCAAATTGAGCCACAAACTTTAATGTTTTTGAAGTAGGACTGTGACTAGCAATTCGCCTAGTGATGCCTCCTTGATCCGTCAAGTGTTTTAGTTAATAGATTTACAGTACGGAGGCATGTCTATATGTTGTATACGATGACCTAATTGATACATTGTTCTTGTTGACATTGATGGATACAAAGACACTGTTCTTTGAAAGTAATGTTTCTGTCTGTAGTTCTGTTTTGTAAGCCAAGTGGGCTTTGTTATGATTTCTAAAAAGCCATAGTTTATAAAAAAAAAAAATAGTAGAAAAAGAATTT</genome_strand>
        <mrna_strand>GGAAGTTGTGATTCATGCTGTGGAAGCTGGCTTTGGGCCACAAATGACAGCTAAAAAGATAGCAGCATTGGCACAGCAAAGAGCAATGGACACAACTAAGCCGTCACCTTTCTCTGATGCAGCCAAAGAGGCCGGATTTGAGTACCAAGGGGGGAAACTTGATGACATAACTGTAGTTGTTTCTTATGTAACTAACAATGCCAATCCATTGGCAAATTGAGCCACAAACTTTAATGTTTTTGAAGTAGGACTGTGACTAGCAATTCGCCTAGTGATGCCTCCTTGATCCGTCAAGTGTTTTAGTTAATAGATTTACAGTACGGAGGCATGTCTATATGTTGTATACGATGACCTAATTGATACATTGTTCTTGTTGACATTGATGGATACAAAGACACTGTTC-TTGAAA.........................................................................AAAAAAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333036" ref_strand="+" ref_description="SGN-U333036        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:9341015-9342868 REVERSE | Aliases: DL4315C, FCAALL.400(evalue: 3e-19, score=92) genbank/nr: gi|42566875|ref|NP_193391.3| expressed protein [Arabidopsis thaliana](evalue: 2e-17, score=92)">
      <seq>ggaagttcctctgtgttcttgcacccaaaagtaaacaaaacggaaaagttgtccgccgtcaacgaaaatattttcaggctttacctcctgaactacttgcagcaagcagagtttctctcgttattgattgttacagcggataatggctgtttgtggttcaagaacttctcatattggccattttgttggtaagatggctgctaggcgcctgcattatgcattggcggtaaataatagtagcgtctcttatagcaataggagcattgagaatgttagaaaagccaacattagtttgagaaataaaggccaacctcacaacttcatgttatctcaatattttaaaactagtgttgcaaagaggaagggacatgaaggatttggattagaaggttttcgcgttttatcacttgcacgtttctcttctggaactactgctcccagcagcctgtcttctgataatactaaggaaaaggaacagactgcagatactgttgattcttctgagggaaagatacacctgaagctgaattcgggatcattttatctgcctcatcctgcgaaagcaaaaactggtggagaggatgctcatttcatttatgatcctgcacaagctataggtgtagctgatggggtcggtggatgggctgatcttggtattgatggcaggggaatatgcccgtgaattaatgtctaactgtatgtctgtgatacaagaggaacctaanggattcgtagaccttattagggtcctggagaaagcttacatgagaacaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="127662" stop="125275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127362" g_stop="127286" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127285" i_stop="126274" i_length="1012">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126273" g_stop="125575" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="777" r_length="700" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-U333036" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127362" e_stop="127286"/>
          <exon e_start="126273" e_stop="125575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTCCTCTGTGTTCTTGCACCCAAAAGTAAACAAAACGGAAAAGTTGTCCGCCGTCAACGAAAATATTTTCAGGTAAATTTTTTCATTAAATCTGTTCCTTGTTAGGATAATAATAAGGATAAATATGACATTTTTAATCCTAATATATTTTTCTGCTTCTTGAGTCAATAGCCTTGCATTGAGTTTGGAATATTTTGATGTTACCTTTGAGTTTTTTTTTGTCAAATAAATTTAAGATATAATTTGTATATTTGTCACTTTTTTAGCTGTTTATCAACTTCTTAAGATTGTCTGTTAATTAGAATTTATCTATTCTAATATGTTCTTTTGCGCAAGAAACTAGATTCGATGAAACTCAATAACTTTACTTCGAACAGTGTATTTGAATGAAGAAGTTTATTGAATATGTATTCAAGTATTTGATTTAGAACCTGGACATTGTTCTTATATTCCGAACTCATAGAGTTAAAATTTTGGTTCCACCTCAGCACAAGATGGTCCTTGTGCAAAGGAGGATCCATAGTCAAATATTGGTAGATTTCTAATGAACTTTTTAATTACTCCCTTCTTCTCAATTTTGTATGAGTTAGTTCGTTTTGATGCGGAGTTTTAAGATAAAAGAAAGGGTTTTTGAAACTTATGGTCTAAAATAAGTCAGTGCCAAGAAATCATTTCATTAAGGATAAAATGGACACGTTAAAATTAAATTGTTACTAAATGTAGACATTCTTTTCGGGAGTGGTTAAAAAGGAAAGTAAATCATATAAAGTGGGACAAGAGGGAGTAATACATTTACAAGGTATGCTTGAAAGTTACTTCGTTCACGTGAACCATTGCTCCTGTCTCTACACTATGGACTACTTGCTTGTAAGAAGTTATGTTGTTACATTGTTTTCCTTGGTGTAATGGGAATGGGGGAGGTTTTGGGATTAACTGAGAGGGAGATATTGCGAGTTTGAATCATGATGTTTACTCTACTTTATATATTCATGCGTTATCTAGTGTGTTTCGAAAGGGAAAAACAAAGAAACTGTGTTAGATGATGAGAACGTGTAAGGTTTTTATGAGGTGATTGTGTTTGCAGGCTTTACCTCCTGAACTACTTGCAGCAAGCAGAGTTTCTCTCGTTATTGATTGTTACAGCGGATAATGGCTGTTTGTGGTTCAAGAACTTCTCATATTGGCCATTTTGTTGGTAAGATGGCTGCTAGGCGCCTGCATTATGCATTGGCGGTAAATAATAGTAGCGTCTCTTATAGCAATAGGAGCATTGAGAATGTTAGAAAAGCCAACATTAGTTTGAGAAATAAAGGCCAACCTCACAACTTCATGTTATCTCAATATTTTAAAACTAGTGTTGCAAAGAGGAAGGGACATGAAGGATTTGGATTAGAAGGTTTTCGCGTTTTATCACTTGCACGTTTCTCTTCTGGAACTACTGCTCCCAGCAGCCTGTCTTCTGATAATACTAAGGAAAAGGAACAGACTGCAGATACTGTTGATTCTTCTGAGGGAAAGATACACCTGAAGCTGAATTCGGGATCATTTTATCTGCCTCATCCTGCGAAAGCAAAAACTGGTGGAGAGGATGCTCATTTCATTTATGATCCTGCACAAGCTATAGGTGTAGCTGATGGGGTCGGTGGATGGGCTGATCTTGGTATTGAT-GCAGGGGAATATGCCCGTGAATTAATGTCTAACTGTATGTCTGTGATACAAGAGGAACCTAAGGATTCCGTAGACCTTATTAGGGTCCTGGAGAAAGCTTACATGAGAACAAAAG</genome_strand>
        <mrna_strand>GGAAGTTCCTCTGTGTTCTTGCACCCAAAAGTAAACAAAACGGAAAAGTTGTCCGCCGTCAACGAAAATATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTACCTCCTGAACTACTTGCAGCAAGCAGAGTTTCTCTCGTTATTGATTGTTACAGCGGATAATGGCTGTTTGTGGTTCAAGAACTTCTCATATTGGCCATTTTGTTGGTAAGATGGCTGCTAGGCGCCTGCATTATGCATTGGCGGTAAATAATAGTAGCGTCTCTTATAGCAATAGGAGCATTGAGAATGTTAGAAAAGCCAACATTAGTTTGAGAAATAAAGGCCAACCTCACAACTTCATGTTATCTCAATATTTTAAAACTAGTGTTGCAAAGAGGAAGGGACATGAAGGATTTGGATTAGAAGGTTTTCGCGTTTTATCACTTGCACGTTTCTCTTCTGGAACTACTGCTCCCAGCAGCCTGTCTTCTGATAATACTAAGGAAAAGGAACAGACTGCAGATACTGTTGATTCTTCTGAGGGAAAGATACACCTGAAGCTGAATTCGGGATCATTTTATCTGCCTCATCCTGCGAAAGCAAAAACTGGTGGAGAGGATGCTCATTTCATTTATGATCCTGCACAAGCTATAGGTGTAGCTGATGGGGTCGGTGGATGGGCTGATCTTGGTATTGATGGCAGGGGAATATGCCCGTGAATTAATGTCTAACTGTATGTCTGTGATACAAGAGGAACCTAANGGATTCGTAGACCTTATTAGGGTCCTGGAGAAAGCTTACATGAGAACAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iWQulD/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319329" ref_strand="+" ref_description="SGN-U319329        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | apolipoprotein D-related, contains weak similarity to Apolipoprotein D precursor (ApoD) (Swiss-Prot:P51910) (Mus musculus) | chr3:17667682-17669273 REVERSE | Aliases: T23J7.190(evalue: 2e-108, score=389) genbank/nr: chloroplast(evalue: 2e-172, score=608)">
      <seq>aaaagtgttttaataattggcttacagctgatgtgaagtaagaacacaatggtttgctacaatttggtggcccaacaatcacctccaattttggttcaatcacaatatccgtcaaaacccagggggttgtctgtgaaagtggtgtcttcctgctgcactgaatgtccaatatttggtaaggttgaggttaaacatgtcatttctggtcttgcggcatcaatcctatttctctctcaaagtagcatggcttttgcagcagacctccctcattacaacagtgtatttcaacttgcaaatgtcgcggacagcatgccaacacttcctttggagaagggaaatgatggtggaaagctgatgatgatgcgaggcatgacagcgaaagactttgatccaatcaggtattctggaagatggttcgaagtagcttcccttaaacgtggatttgctggacaaggtcaagaagattgtcattgcacacagggcatttacactgttgatatgaatgcacctgctatccaagtagacacattttgcgttcatggaggacctgatggctacatcacaggcataaggggaagggttcaatgccttaatgaggaggataaggagaaagacgagactgatctagaaaggcaagaaatgattagggagaagtgttaccttaggtttcctacactgccgttcatccctaaggagccttatgatgtaattgcaactgattatgataacttcgcactggtttctggagctaaagataaaagcttcgttcagatatactcgaggacgcctaatccaggaccagaatttatcgacaggtacaagaactacttagcaagtttcggatatgatccaagcaaaatcaatgacactccacaagactgtgaggtaaagactaccagtcagctatcagcaatgatgtccatgtccggaatgcaacaagctctaaacaaccaatttcctgatttagagttgagacgccctgttcaattcaacccattcacaagcgttttcgaaactctcaagaaacttgctgaactatatttcaagtagtaaatccacttgatatattacttgtatagtgcatagttcttatgactagtggctgtaacacattgaactaaagttcaactatgaatgacatacactccagaaaaatttgtgtgttactattgggaaaatggtacacatatgtgaatgacatgcttatatatggtatgagttttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-DWQrk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="127550" stop="132053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127850" g_stop="127971" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127972" i_stop="129362" i_length="1391">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129363" g_stop="129486" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="246" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129487" i_stop="129700" i_length="214">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129701" g_stop="129934" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="480" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129935" i_stop="130080" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130081" g_stop="130371" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="771" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130372" i_stop="131298" i_length="927">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131299" g_stop="131755" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="1228" r_length="457" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-U319329" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127850" e_stop="127971"/>
          <exon e_start="129363" e_stop="129486"/>
          <exon e_start="129701" e_stop="129934"/>
          <exon e_start="130081" e_stop="130371"/>
          <exon e_start="131299" e_stop="131755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGTTTTAATAATTGGCTTACAGCTGATGTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAGGTATAATCTCACTCTTTTTTTTTTGCTTATATTCTCAAATCTCAACAATTATATTCTCTAAATTGTACTGCTGTGATCTGTTAAAAATAGTACCCTTTATGGTTGTGATTGTTCAGAATTAAATAAAAATTGTACTAAAACCAGACCAATGAAAATGAAAGCTGCAATTCCAAATCTTTAAGCTAAAATGCCATAACCAAGGGAAGAATGTCAGATTTTAGTGAGTCAGTTTGAACTTTTTTATTTAGGTTTACAATAATTAATAGTCTTTTTGACCAAGTATATAAAATGTTCTTGTTTGGAGAAGTGCTTTCCCAAAAAAAGTATAGCAATTTGTGTTTGATTAATCAGTTTTGCTTGATGTTTGAATAGTTGTTTGTGTAAGCTACTACTCAAACACTTATTTTTGCCTAAAGTCGATATCAAATACCTAACTTTGATAAAATAAGCACTTTTAGCTACCCATATAAGCCTCAGTCTCAACCAAGTTGGAGTCGATTATATAAATCCCAAACCTGATCATGTTTCTCCATTTAAACTCTGATACTAAACAACAACCTTTTATTTTTATTAGTTTCTCAAAGTATAAATTTTGTTGTTTCTTTTGATACCATTTTGTGGACATCGGGATGCATACGAAATGAGTGAATAGCTCATCTGCTAATCAATGTTAATACTTGGAAAAATGCATATTCTTCTTAACGAACAATCTAAGTCTTCCTATATCAGCCACTTTCTAAGTAAATATTATTTGTCCATTTAGTCAATCCCATTATCTGATTGGCTAACTAGTAAGGATGACACGAGAATGGCCATTAGATTACATTCTCAAATCTCAAGTGTATTAATAGCAATAATTTATCATAATGAGGTCTTCTTAGAGTCAAAAGGAATATTGAAAGTTGCTTGATCATCATACAAGTACCCATGGTCATGTGCCTACTGGTCAATGAAGTGGGTTGAGAACCATGAGGTCTCAAGTTCAAATTCATCTTAGACAAATATACTAGCTGATTCTTCCCTAGTGGAAAGAGCTATCCGGTACCTGTCCTGGTGGAGGAGTAGGTACCCGTGGAAATTAGTCCTATTTCAGTACACGAAAATTCCTCCTTTAATTGGAATTACACCTCTGAATAGGAAGTACATCCAATAGGATATTTCCTTGTCTGATACCTTTTGGTGTGTTTGAGGTGTAGTCTGACAAAAGACATTGCTTGTTTACTTTTCTTTCCTGCAGCAATAGATAACCTAAACTGTCCAAGCAGTGTAATGCATCCAGCTTAGTTTTACGTATTATATTTTATGTGGCTGATGTTTTCTCAAAGATTCTTTTTTCCTTCCAAAACATTCCCATTCTTCATGTAATGAGGATTTTTCGTCGGTCCTTGTAGGGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTGCACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTGTACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAGGTTGAATGTTGAGAATGTTAACACCTGAAAAATCACGCCTTCTGTTTTCTGTCTTTTGAAGATATTTTGGGTTACTTGACTCTCGGACACATATACTTGAAGATGTCTTTTTTGGCATAATCTGTCTTTATTCCAAATTATTTCAGGGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAGGTAATTAATTCTTTCAGTTTAAACCAGTGTGACTTTTAGTACTGTACAAAATGTGGGTGGGTTTCTTACATATCAAATGTTTATTGCTGTCACACCTTTAAATTAATGAAATATCCCAACTAAGCAATACCATAATAGGGAGCTGTTAAAGAAGTCCCACATCCGTCAATTATGGGATACATGGTCTCTTTATATGGCCCGGGCAATCCTCACCTCTTGAGCTAGTTTTTGTCGTTGAGTTAGGCTCGAGATCCATTTCTTTACTTGAGCAAATTAGAAAAAAAAACTTTTCCTTTGTACGAAGGCATGGATACAGACACTCCCCTCAGACCTAATATCGGGTCCATTTTCTAAGTATCAAGACTTAGTATGTGAGGATGTTTTAGATAGCATTAGCATAGCCTACAGCTTAAGTAAAAGGGGTACATTGTAGATACATTTTGTAATTACGGATATATGATGTGAACTAGGATTGTTGAATACTTTTGTTGATGTTAGTGCTTGCAGGAGCGGATCTAGTGTACTGTTCATATATGGGTTCATCCAAACCCAGTAGATTTGGCTCGTACCCTGTATATATGTTAAGATGTGCACTAAATAAGTACAGATGATAGATATCAGATCCAACAAATCAAATATTTATGGTATGATCCCAAACTCGAACCTGTAATGTTCAAATCCTGGTTCCGCCTTTGAGTGTTTGAATGTCTAGTATTGTTGTAAGAATGCTGGAAGAGGCATTTGTGATTATAAAAGAAACTTGGCATGATATAGGTTATAACACAGCATAAATCTATATCTAATTCACTTGAACATTACACAAGAAGAAACATCAATTACAACTCTCAAAATTGCTGGAATTTACTTATAGTACATGATTTATCCGACTGACTAACTGATTATGCCTTTTTTCTCTCCTCAAATCAGATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGGAATGCAACAAGCTCTAAACAACCAATTTCCTGATTTAGAGTTGAGACGCCCTGTTCAATTCAACCCATTCACAAGCGTTTTCGAAACTCTCAAGAAACTTGCTGAACTATATTTCAAGTAGTAAATCCACTTGATATATTACTTGTATAGTGCATAGTTCTTATGACTAGTGGCTGTAACACATTGAACTAAAGTTCAACTATGAATGACATACACTCCAGAAAAATTTGTGTGTTACTATTGGGAAAATGGTAGACATATGTGAATGACATGCTTATATTTGGTATGAGTTTAAAATA</genome_strand>
        <mrna_strand>AAAAGTGTTTTAATAATTGGCTTACAGCTGATGTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATG......................................................................................................................................................................................................................GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG..................................................................................................................................................GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGGAATGCAACAAGCTCTAAACAACCAATTTCCTGATTTAGAGTTGAGACGCCCTGTTCAATTCAACCCATTCACAAGCGTTTTCGAAACTCTCAAGAAACTTGCTGAACTATATTTCAAGTAGTAAATCCACTTGATATATTACTTGTATAGTGCATAGTTCTTATGACTAGTGGCTGTAACACATTGAACTAAAGTTCAACTATGAATGACATACACTCCAGAAAAATTTGTGTGTTACTATTGGGAAAATGGTACACATATGTGAATGACATGCTTATATATGGTATGAGTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>34</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5575" PGL_stop="11143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5575" e_stop="6323"/>
            <exon e_start="6932" e_stop="7025"/>
            <exon e_start="7104" e_stop="7137"/>
            <exon e_start="7237" e_stop="7291"/>
            <exon e_start="8084" e_stop="8167"/>
            <exon e_start="8249" e_stop="8536"/>
            <exon e_start="8643" e_stop="9101"/>
            <exon e_start="9456" e_stop="9466"/>
            <exon e_start="9679" e_stop="9760"/>
            <exon e_start="10184" e_stop="10222"/>
            <exon e_start="11063" e_stop="11143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.440" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.917" e_score="0.965"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.818"/>
          <exon-intron don_prob="0.838" acc_prob="0.757" e_score="0.549"/>
          <exon-intron don_prob="0.914" acc_prob="0.000" e_score="0.487"/>
          <exon-only e_score="0.543"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5575" e_stop="6323" e_length="749"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.440">
            <gDNA_intron_boundary i_start="6324" i_stop="6931" i_length="608"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6932" e_stop="7025" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.915">
            <gDNA_intron_boundary i_start="7026" i_stop="7103" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7104" e_stop="7137" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7138" i_stop="7236" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7237" e_stop="7291" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.990">
            <gDNA_intron_boundary i_start="7292" i_stop="8083" i_length="792"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8084" e_stop="8167" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.915">
            <gDNA_intron_boundary i_start="8168" i_stop="8248" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8249" e_stop="8536" e_length="288"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="8537" i_stop="8642" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="0.965">
            <gDNA_exon_boundary e_start="8643" e_stop="9101" e_length="459"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.917">
            <gDNA_intron_boundary i_start="9102" i_stop="9455" i_length="354"/>
          </intron>
          <exon e_serial="8" e_score="0.818">
            <gDNA_exon_boundary e_start="9456" e_stop="9466" e_length="11"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9467" i_stop="9678" i_length="212"/>
          </intron>
          <exon e_serial="9" e_score="0.549">
            <gDNA_exon_boundary e_start="9679" e_stop="9760" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.838" acc_prob="0.757">
            <gDNA_intron_boundary i_start="9761" i_stop="10183" i_length="423"/>
          </intron>
          <exon e_serial="10" e_score="0.487">
            <gDNA_exon_boundary e_start="10184" e_stop="10222" e_length="39"/>
          </exon>
          <intron i_serial="10" don_prob="0.914" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10223" i_stop="11062" i_length="840"/>
          </intron>
          <exon e_serial="11" e_score="0.543">
            <gDNA_exon_boundary e_start="11063" e_stop="11143" e_length="81"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5575" stop="6323"/>
              <exon start="6932" stop="7025"/>
              <exon start="7104" stop="7137"/>
              <exon start="7237" stop="7291"/>
              <exon start="8084" stop="8167"/>
              <exon start="8249" stop="8536"/>
              <exon start="8643" stop="9101"/>
              <exon start="9456" stop="9466"/>
              <exon start="9679" stop="9760"/>
              <exon start="10184" stop="10222"/>
              <exon start="11063" stop="11143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG : GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG : GGACGGCAAGTAACATTGTCACTTACATTGCACG : TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG : GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG : GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG : AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGTATTGATAGTGTTGGATAACTTAAAATATTTCTGCAGATTTACGTATTTA : GCCTAAGAGTA : GTTTTATGTCAAAATATTGGGTTTCGTTTCAGTAGCAGATCAAGAATTTTCATCATTTGGGATTTGAACTTGGAATCTCAAG : ATGGACCAGGATCACAAATAGGACATGTTTGGACCGGAG : TTCTCTTCCAATTTTATTTATTCATTTATATTAAAATTAAATATTTATTTTTATTTAATCAATTAAAAAAATTTAAACAGA</gDNA_template>
            <first_frame> K  Y  F  L  R  *  Q  S  N  K  K  E  L  I  F  L  L  I  Q  S  I  P  K  Q  S  V  K  M  N  E  P  N  L  N  F  K  L  *  K  F  S  N  L  F  Y  I  R  F  T  P  I  S  V  *  R  W  S  M  S  D  N  R  N  S  G  I  I  A  G  I  F  I  S  *  E  K  K  C  R  L  L  C  Q  H  Q  L  A  V  T  S  I  A  Q  E  E  E  D  L  Y  T  I  I  N  M  T  P  P  K  I  T  P  F  L  L  H  Q  L  N  H  F  V  F  Q  A  P  I  C  L  F  N  H  K  I  L  F  C  I  E  N  P  F  H  *  Y  P  E  D  S  F  C  V  Q  I  R  Q  L  P  L  L  L  M  V  M  T  T  R  I  K  A  L  G  I  G  S  K  V  L  G  K  R  F  L  F  C  F  P  C  G  *  L  W  V  A  *  L  G  C  L  N  L  A  R  T  I  G  S  N  L  N  G  L  *  W  A  L  H  S  L  C  L  V  W  E  *  L  L  L  S  M  T  F  V  V  L  *  R  C  L  K  S  C  S  A  D  S  S  F  S  I  R :   *  C  L  Y  R  D  I  L  L  A  S  Y  *  I  C  H  P  I  M  Q  Q  A  *  Y  W  L  A  A  V  L  E  :  G  R  Q  V  T  L  S  L  T  L  H   : V  E  M  W  R  F  Q  F  *  *  L  L  Q  V  P  Y  L  P  W :   *  *  P  L  F  *  Q  R  N  L  Q  G  N  L  L  Q  *  M  Q  L  D  F  S  C  L  L  Y  R :   W  C  F  F  L  Y  *  L  V  H  F  *  I  S  I  S  K  A  *  S  K  S  C  L  H  *  C  H  L  L  L  *  Q  L  L  L  F  F  V  E  M  Q  L  H  R  V  L  L  Q  S  L  C  Q  D  N  R  L  S  *  L  L  L  F  F  M  R  L  A  S  S  L  A  M  Y  S  Q  G  C  L  E  L  I  C  P  P  Q  G  Q  Y  L  L  K  S  E  C  R :   T  R  F  L  E  *  F  *  P  L  S  T  L  V  I  H  L  L  Q  Y  H  V  P  F  L  V  F  A  I  R  Y  L  A  V  P  W  L  A  Y  G  G  V  L  F  Q  I  K  C  R  T  K  S  L  C  W  Q  F  Y  D  G  L  N  I  R  L  *  F  F  A  V  I  I  K  L  G  S  Q  *  I  R  R  S  F  Y  F  F  G  K  F  I  V  M  S  G  E  S  A  L  I  C  L  *  *  N  Q  F  Y  F  V  G  G  G  G  S  K  T  Y  K  H  L  D  H  W  Q  E  F  I  C  I  *  Y  L  I  L  V  L  Y  *  *  C  W  I  T  *  N  I  S  A  D  L  R  I  * :   P  K  S   : S  F  M  S  K  Y  W  V  S  F  Q  *  Q  I  K  N  F  H  H  L  G  F  E  L  G  I  S  R :   W  T  R  I  T  N  R  T  C  L  D  R  S :   S  L  P  I  L  F  I  H  L  Y  *  N  *  I  F  I  F  I  *  S  I  K  K  I  *  T   </first_frame>
            <second_frame>  N  I  S  F  D  N  N  Q  I  R  K  S  L  Y  F  C  *  F  N  Q  F  Q  N  K  V  S  R  *  M  S  P  I  *  I  L  N  C  K  N  F  Q  T  Y  S  T  S  A  S  P  R  L  A  Y  N  D  G  R  *  V  T  T  G  T  V  A  L  L  L  E  Y  S  S  A  R  R  K  N  A  G  S  C  V  S  T  N  *  L  L  H  Q  L  H  K  K  K  K  I  Y  T  Q  *  S  I  *  H  L  Q  R  L  P  L  F  F  F  T  N  *  I  T  L  F  F  K  H  P  F  A  F  S  I  T  K  S  C  S  V  S  K  T  H  F  I  N  I  Q  R  T  A  S  V  F  K  F  V  N  C  H  Y  C  *  W  *  *  Q  Q  E  *  K  L  W  G  L  D  P  K  C  W  G  N  D  F  C  F  V  S  L  V  G  S  F  G  L  L  D  W  A  A  *  T  *  L  V  Q  L  G  Q  T  S  M  D  C  D  G  H  Y  T  H  Y  A  W  Y  G  N  D  S  Y  F  R  *  P  S  W  C  F  S  D  A  *  R  A  V  L  R  I  H  P  S  V  F   : G  D  A  F  I  G  I  F  C  *  Q  A  I  K  F  A  I  P  L  C  S  R  L  D  I  G  W  L  L  S  W  R :   D  G  K  *  H  C  H  L  H  C  T  :  W  K  C  G  A  F  S  F  D  D  C  C  K  Y  P  I  C  R   : G  D  D  P  F  S  N  R  E  T  C  R  A  I  C  C  S  R  C  S  W  T  F  H  V  Y  F  T   : G  G  A  S  S  C  I  S  W  C  I  S  E  S  V  F  Q  R  P  S  Q  N  R  V  S  I  D  A  T  Y  C  C  S  N  C  C  C  S  L  W  K  C  N  C  T  E  F  F  C  N  P  Y  V  R  T  T  G  C  H  S  C  C  S  S  S  C  V  W  L  L  L  W  L  C  T  R  K  D  A  W  S  *  Y  V  L  L  K  D  N  I  Y  *  S  R  N  A   : E  L  G  S  W  S  S  S  S  H  S  A  L  W  *  S  T  Y  C  S  T  M  C  R  F  *  C  L  P  F  D  I  W  Q  C  L  G  W  H  M  E  A  F  Y  S  R  *  S  A  G  L  S  H  S  V  G  N  S  M  M  V  *  I  *  D  C  S  F  S  Q  *  S  S  S  L  V  V  S  E  F  G  D  L  F  I  F  L  G  S  S  *  *  C  L  A  N  Q  H  *  S  V  C  S  K  T  N  F  T  L  L  V  V  A  V  V  K  P  I  N  I  L  I  I  G  R  N  L  S  A  S  D  I  *  F  L  F  C  I  D  S  V  G  *  L  K  I  F  L  Q  I  Y  V  F   : S  L  R  V  :  V  L  C  Q  N  I  G  F  R  F  S  S  R  S  R  I  F  I  I  W  D  L  N  L  E  S  Q   : D  G  P  G  S  Q  I  G  H  V  W  T  G   : V  L  F  Q  F  Y  L  F  I  Y  I  K  I  K  Y  L  F  L  F  N  Q  L  K  K  F  K  Q  </second_frame>
            <third_frame>   I  F  P  S  I  T  I  K  *  E  R  A  Y  I  F  V  N  S  I  N  S  K  T  K  C  Q  D  E  *  A  Q  F  K  F  *  I  V  K  I  F  K  L  I  L  H  P  L  H  P  D  *  R  I  T  M  V  D  E  *  Q  P  E  Q  W  H  Y  C  W  N  I  H  Q  L  G  E  K  M  Q  A  L  V  S  A  P  T  S  C  Y  I  N  C  T  R  R  R  R  F  I  H  N  N  Q  Y  D  T  S  K  D  Y  P  F  S  S  S  P  T  K  S  L  C  F  S  S  T  H  L  P  F  Q  S  Q  N  L  V  L  Y  R  K  P  I  S  L  I  S  R  G  Q  L  L  C  S  N  S  S  T  A  I  T  A  D  G  D  D  N  K  N  K  S  F  G  D  W  I  Q  S  V  G  E  T  I  S  V  L  F  P  L  W  V  A  L  G  C  L  I  G  L  L  K  P  S  S  Y  N  W  V  K  P  Q  W  T  V  M  G  I  T  L  T  M  L  G  M  G  M  T  L  T  F  D  D  L  R  G  A  L  A  M  P  K  E  L  F  C  G  F  I  L  Q  Y  S  :  V  M  P  L  S  G  Y  F  V  S  K  L  L  N  L  P  S  H  Y  A  A  G  L  I  L  V  G  C  C  P  G   : G  T  A  S  N  I  V  T  Y  I  A  R :   G  N  V  A  L  S  V  L  M  T  A  A  S  T  L  S  A  V  :  V  M  T  P  F  L  T  E  K  L  A  G  Q  F  V  A  V  D  A  A  G  L  F  M  S  T  L  Q  :  V  V  L  L  P  V  L  A  G  A  F  L  N  Q  Y  F  K  G  L  V  K  I  V  S  P  L  M  P  P  I  A  V  A  T  V  A  V  L  C  G  N  A  I  A  Q  S  S  S  A  I  L  M  S  G  Q  Q  V  V  I  A  A  A  L  L  H  A  S  G  F  F  F  G  Y  V  L  A  R  M  L  G  V  D  M  S  S  S  R  T  I  S  I  E  V  G  M  Q  :  N  S  V  L  G  V  V  L  A  T  Q  H  F  G  N  P  L  T  A  V  P  C  A  V  S  S  V  C  H  S  I  F  G  S  A  L  A  G  I  W  R  R  S  I  P  D  K  V  Q  D  *  V  T  L  L  A  I  L  *  W  S  E  Y  K  I  V  V  F  R  S  D  H  Q  A  W  *  S  V  N  S  E  I  F  L  F  F  W  E  V  H  S  D  V  W  R  I  S  I  N  L  S  V  V  K  P  I  L  L  C  W  W  W  R  *  *  N  L  *  T  S  *  S  L  A  G  I  Y  L  H  L  I  S  N  S  C  S  V  L  I  V  L  D  N  L  K  Y  F  C  R  F  T  Y  L  :  A  *  E  * :   F  Y  V  K  I  L  G  F  V  S  V  A  D  Q  E  F  S  S  F  G  I  *  T  W  N  L  K  :  M  D  Q  D  H  K  *  D  M  F  G  P  E  :  F  S  S  N  F  I  Y  S  F  I  L  K  L  N  I  Y  F  Y  L  I  N  *  K  N  L  N  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5754" stop="6323"/>
                    <exon start="6932" stop="7025"/>
                    <exon start="7104" stop="7137"/>
                    <exon start="7237" stop="7291"/>
                    <exon start="8084" stop="8167"/>
                    <exon start="8249" stop="8536"/>
                    <exon start="8643" stop="8795"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPEQWHYCWNIHQLGEKMQALVSAPTSCYINCTRRRRFIHNNQYDTSKDYPFSSSPTKSLCFSSTHLPFQSQNLVLYRKPISLISRGQLLCSNSSTAITADGDDNKNKSFGDWIQSVGETISVLFPLWVALGCLIGLLKPSSYNWVKPQWTVMGITLTMLGMGMTLTFDDLRGALAMPKELFCGFILQYSVMPLSGYFVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTEKLAGQFVAVDAAGLFMSTLQVVLLPVLAGAFLNQYFKGLVKIVSPLMPPIAVATVAVLCGNAIAQSSSAILMSGQQVVIAAALLHASGFFFGYVLARMLGVDMSSSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSIFGSALAGIWRRSIPDKVQD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9071" stop="9101"/>
                    <exon start="9456" stop="9466"/>
                    <exon start="9679" stop="9760"/>
                    <exon start="10184" stop="10222"/>
                    <exon start="11063" stop="11142"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKIFLQIYVFSLRVVLCQNIGFRFSSRSRIFIIWDLNLESQDGPGSQIGHVWTGVLFQFYLFIYIKIKYLFLFNQLKKFKQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13612" PGL_stop="14142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13612" e_stop="14142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="13612" e_stop="14142" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13612" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCACAAAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTCTTTTCGTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGCGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTTGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</gDNA_template>
            <first_frame> F  F  L  S  P  Y  P  K  S  I  K  E  K  N  *  H  K  K  K  N  *  W  L  V  I  M  N  L  N  Y  Q  I  I  I  V  I  E  V  T  M  T  W  T  R  T  R  M  S  K  I  T  *  K  R  R  K  K  K  M  I  I  Q  M  T  T  T  F  V  V  V  V  V  E  E  E  D  *  Q  T  S  F  R  G  K  S  *  T  L  E  R  L  G  F  K  N  G  I  E  Y  F  Y  *  Y  V  P  R  G  Y  L  W  I  L  S  F  S  T  L  S  L  S  A  R  L  A  C  A  F  L  S  M  V  G  L  R  *  R  S  P  F  F  D  A  *  P  M  R  C  I  Y  G  T  C  G  Y  D  S  R  C  I  N  Y  V  L  T  M  K  K  W  M  K  I  K  L  L  V  V  V </first_frame>
            <second_frame>  F  F  Y  L  H  I  P  N  P  *  K  K  K  T  S  T  K  K  K  I  N  G  *  S  S  *  T  *  T  I  K  *  L  *  *  S  K  *  R  *  H  G  R  G  R  G  *  A  R  *  H  R  R  G  G  K  R  R  *  *  F  K  *  L  Q  H  L  *  *  S  *  S  R  R  R  I  D  R  L  L  F  V  E  S  H  R  P  *  S  A  L  G  S  R  M  E  S  S  I  F  I  S  M  C  H  G  A  I  C  G  S  S  L  F  L  L  S  L  Y  Q  R  D  L  H  V  P  F  Y  R  W  L  V  C  G  N  G  H  R  S  S  M  H  D  R  C  D  A  F  M  E  H  V  D  T  I  Q  D  A  *  I  T  S  L  Q  *  K  N  G  *  K  S  N  Y  *  *  *   </second_frame>
            <third_frame>   F  F  I  S  I  S  Q  I  H  K  R  K  K  L  A  Q  K  K  K  L  M  A  S  H  H  E  L  E  L  S  N  N  Y  S  D  R  S  D  D  D  M  D  E  D  E  D  E  Q  D  N  I  E  E  E  E  K  E  D  D  N  S  N  D  Y  N  I  C  S  S  R  S  R  G  G  G  L  T  D  F  F  S  W  K  V  I  D  P  R  A  P  W  V  Q  E  W  N  R  V  F  L  L  V  C  A  T  G  L  F  V  D  P  L  F  F  Y  S  L  S  I  S  E  T  C  M  C  L  F  I  D  G  W  F  A  V  T  V  T  V  L  R  C  M  T  D  A  M  H  L  W  N  M  W  I  R  F  K  M  H  K  L  R  P  Y  N  E  K  M  D  E  N  Q  I  T  S  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13614" stop="14141"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFISISQIHKRKKLAQKKKLMASHHELELSNNYSDRSDDDMDEDEDEQDNIEEEEKEDDNSNDYNICSSRSRGGGLTDFFSWKVIDPRAPWVQEWNRVFLLVCATGLFVDPLFFYSLSISETCMCLFIDGWFAVTVTVLRCMTDAMHLWNMWIRFKMHKLRPYNEKMDENQITSSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="15990" PGL_stop="19824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15990" e_stop="16081"/>
            <exon e_start="16460" e_stop="16773"/>
            <exon e_start="16934" e_stop="17042"/>
            <exon e_start="17445" e_stop="17681"/>
            <exon e_start="18633" e_stop="18719"/>
            <exon e_start="18841" e_stop="18983"/>
            <exon e_start="19234" e_stop="19649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.018" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15990" e_stop="16081" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16082" i_stop="16459" i_length="378"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16460" e_stop="16773" e_length="314"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="16774" i_stop="16933" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16934" e_stop="17042" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17043" i_stop="17444" i_length="402"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17445" e_stop="17681" e_length="237"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.961">
            <gDNA_intron_boundary i_start="17682" i_stop="18632" i_length="951"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18633" e_stop="18719" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.018">
            <gDNA_intron_boundary i_start="18720" i_stop="18840" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18841" e_stop="18983" e_length="143"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.945">
            <gDNA_intron_boundary i_start="18984" i_stop="19233" i_length="250"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="19234" e_stop="19649" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15990" stop="16081"/>
              <exon start="16460" stop="16773"/>
              <exon start="16934" stop="16949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16761" stop="16773"/>
              <exon start="16934" stop="17042"/>
              <exon start="17445" stop="17681"/>
              <exon start="18633" stop="18719"/>
              <exon start="18841" stop="18983"/>
              <exon start="19234" stop="19649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326304" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGACGCATGCAGAATCTCTCTGGATACATTTTTGGTACTGTTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCAT : GCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAG : TACATTTGGAAACTTGGAGAGCACAACAGATTGGCTGGAAGATGTATTCATAATCATTGTTCTCACTACTGGTCTTCTTCTTGTCACTATGTTGATTGGTAATATCAAG : GTATTCTTGCATGCAACAACATCAAAGAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAG : GTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACA : ATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATG : GTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATG</gDNA_template>
            <first_frame> *  D  A  C  R  I  S  L  D  T  F  L  V  L  F  G  G  E  L  L  L  T  *  L  L  I  L  L  P  P  M :   Q  W  E  H  V  G  T  C  *  E  S  K  G  Q  Q  N  V  *  N  N  S  V  E  L  Q  M  V  V  A  *  E  C  W  H  V  K  R  K  Y  F  M  E  Q  V  V  W  *  S  I  E  V  E  S  Y  G  V  S  P  K  L  Q  D  Q  H  V  *  P  L  N  T  I  L  I  M  E  F  I  N  G  L  F  N  L  S  Q  M  R  I  V  L  R  K  Y  Y  F  P  S  S  G  V  S  *  L  S   : V  H  L  E  T  W  R  A  Q  Q  I  G  W  K  M  Y  S  *  S  L  F  S  L  L  V  F  F  L  S  L  C  *  L  V  I  S  R :   Y  S  C  M  Q  Q  H  Q  R  N  K  Q  C  N  *  K  *  E  M  *  N  G  G  *  G  E  E  G  C  L  K  D  T  S  K  G  S  E  I  M  K  G  I  D  L  Q  Q  Q  E  E  L  M  N  M  R  *  *  A  T  F  L  R  D  L  E  E  T  S  N  I  I  F  V  W  T  W  L  D  R :   F  L  C  F  N  I  W  I  I  W  S  W  R  T  Y  V  T  A  *  N  P  *  F  S  L  K  E  K  Q :   *  Q  E  K  V  I  Q  F  K  E  C  C  S  *  *  E  V  I  S  K  A  V  K  N  L  E  M  V  S  K  V  V  A  C  W  A  L  E  T  S  A  A  T  N  F  S  H   : G  A  S  G  N  P  S  W  S  V  Y  R  L  P  P  H  R  *  *  L  S  R  P  Q  K  R  L  A  S  K  Q  M  M  S  S  M  S  L  N  I  S  A  T  H  L  *  M  R  K  *  R  E  A  P  D  I  I  L  Q  D  G  E  L  G  L  P  L  L  F  S  W  P  G  G  D  I  D  T  G  *  L  S  R  R  C  P  S  F  D  Q  D  D  R  C  L  D  L  L  H  *  Q  K  T  D  S  G  Y  I  Q  L  C  S  L  H  Q  S  L  I  R  T  I  L  I  F  K  K  S  N  K  Q  M  E  C  Y  L  L  S  V  M </first_frame>
            <second_frame>  K  T  H  A  E  S  L  W  I  H  F  W  Y  C  L  V  G  N  C  S  *  L  D  C  L  F  C  C  L  P   : C  S  G  S  M  L  V  L  A  R  N  P  K  G  S  K  M  F  E  T  T  V  *  S  Y  K  W  L  *  P  K  N  V  G  M  *  R  E  N  I  L  W  N  K  *  F  G  E  A  *  K  *  S  H  M  G  *  V  Q  N  C  K  I  N  M  S  S  L  *  T  Q  F  *  L  W  S  L  *  M  D  C  S  T  C  H  K  *  E  S  F  *  E  N  I  I  S  H  L  L  G  S  H  D  S  Q  :  Y  I  W  K  L  G  E  H  N  R  L  A  G  R  C  I  H  N  H  C  S  H  Y  W  S  S  S  C  H  Y  V  D  W  *  Y  Q   : G  I  L  A  C  N  N  I  K  E  T  S  N  A  T  K  N  E  K  C  R  M  V  D  E  E  K  K  V  A  S  R  I  Q  A  K  G  Q  K  L  *  K  A  *  I  C  S  N  K  R  S  *  *  I  *  D  D  K  Q  P  S  *  G  T  *  K  R  H  Q  I  S  S  L  F  G  L  G  *  T   : G  S  F  V  S  T  Y  G  *  F  G  P  G  E  H  M  *  P  R  K  I  L  D  F  H  *  R  R  N   : N  N  K  R  R  *  S  S  S  K  N  V  V  H  S  E  R  S  S  P  K  Q  S  R  T  *  R  W  C  Q  K  L  L  H  V  G  P  W  K  L  Q  R  R  R  T  S  L  M  :  V  P  P  E  T  L  R  G  A  S  T  A  F  L  L  I  A  S  D  S  R  D  H  R  S  V  W  P  R  S  R  *  C  Q  V  C  H  S  T  F  P  L  H  I  C  E  *  E  S  E  E  K  R  Q  I  L  F  S  R  M  A  N  L  G  C  R  C  Y  S  V  G  L  E  E  I  *  T  P  A  D  S  H  V  V  V  L  H  S  T  K  T  T  V  V  S  I  F  F  I  N  R  R  Q  T  Q  A  I  Y  S  F  A  H  F  T  K  A  *  S  G  R  F  *  F  L  K  R  A  T  N  K  W  N  V  T  F  F  L  L   </second_frame>
            <third_frame>   R  R  M  Q  N  L  S  G  Y  I  F  G  T  V  W  W  G  I  A  L  N  L  I  A  Y  F  V  A  S  H  :  A  V  G  A  C  W  Y  L  L  G  I  Q  R  A  A  K  C  L  K  Q  Q  C  R  V  T  N  G  C  S  L  R  M  L  A  C  E  E  K  I  F  Y  G  T  S  S  L  V  K  H  R  S  R  V  I  W  G  E  S  K  I  A  R  S  T  C  L  A  S  E  H  N  F  D  Y  G  V  Y  K  W  T  V  Q  L  V  T  N  E  N  R  F  E  K  I  L  F  P  I  F  W  G  L  M  T  L  S :   T  F  G  N  L  E  S  T  T  D  W  L  E  D  V  F  I  I  I  V  L  T  T  G  L  L  L  V  T  M  L  I  G  N  I  K  :  V  F  L  H  A  T  T  S  K  K  Q  A  M  Q  L  K  M  R  N  V  E  W  W  M  R  R  R  R  L  P  Q  G  Y  K  Q  R  V  R  N  Y  E  R  H  R  F  A  A  T  R  G  V  D  E  Y  E  M  I  S  N  L  P  E  G  L  R  R  D  I  K  Y  H  L  C  L  D  L  V  R  Q  :  V  P  L  F  Q  H  M  D  N  L  V  L  E  N  I  C  D  R  V  K  S  L  I  F  T  K  G  E  T  :  I  T  R  E  G  D  P  V  Q  R  M  L  F  I  V  R  G  H  L  Q  S  S  Q  E  L  R  D  G  V  K  S  C  C  M  L  G  P  G  N  F  S  G  D  E  L  L  S  W :   C  L  R  K  P  F  V  E  R  L  P  P  S  S  S  S  L  V  T  L  E  T  T  E  A  F  G  L  E  A  D  D  V  K  Y  V  T  Q  H  F  R  Y  T  F  V  N  E  K  V  K  R  S  A  R  Y  Y  S  P  G  W  R  T  W  A  A  V  A  I  Q  L  A  W  R  R  Y  R  H  R  L  T  L  T  S  L  S  F  I  R  P  R  R  P  L  S  R  S  S  S  L  T  E  D  R  L  R  L  Y  T  A  L  L  T  S  P  K  P  N  Q  D  D  F  D  F  *  K  E  Q  Q  T  N  G  M  L  P  S  F  C  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15992" stop="16081"/>
                    <exon start="16460" stop="16773"/>
                    <exon start="16934" stop="17042"/>
                    <exon start="17445" stop="17681"/>
                    <exon start="18633" stop="18719"/>
                    <exon start="18841" stop="18983"/>
                    <exon start="19234" stop="19606"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1350</number_coding_nucleotides>
                  <number_encoded_amino_acids>450</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRMQNLSGYIFGTVWWGIALNLIAYFVASHAVGACWYLLGIQRAAKCLKQQCRVTNGCSLRMLACEEKIFYGTSSLVKHRSRVIWGESKIARSTCLASEHNFDYGVYKWTVQLVTNENRFEKILFPIFWGLMTLSTFGNLESTTDWLEDVFIIIVLTTGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNVEWWMRRRRLPQGYKQRVRNYERHRFAATRGVDEYEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDNLVLENICDRVKSLIFTKGETITREGDPVQRMLFIVRGHLQSSQELRDGVKSCCMLGPGNFSGDELLSWCLRKPFVERLPPSSSSLVTLETTEAFGLEADDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRSSSLTEDRLRLYTALLTSPKPNQDDFDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18908" e_stop="19824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="18908" e_stop="19824" e_length="917"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18908" stop="19824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATATTTTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATGAGATAGGAGCACATCCCCCTCCCTCTATATGTCCTTCAATTATCCATTCATGTGATATGTAGTAGTCTCTTCGTTTCAATTTATGTGAATTCGTGGACACCGAGTTTAAGAAAGAAAAGAAGATTTTGATCTACAGTCTGTAGATTTTGAGGTCATGTAGAACATCTCAGATCAA</gDNA_template>
            <first_frame> K  N  L  E  M  V  S  K  V  V  A  C  W  A  L  E  T  S  A  A  T  N  F  S  H  G  K  F  R  S  E  S  S  C  L  Y  L  G  N  *  F  E  K  Q  I  *  *  T  R  M  V  V  Y  T  R  L  I  H  S  R  I  D  G  P  I  P  M  I  T  K  I  K  *  *  H  L  W  L  P  R  I  L  G  K  Q  A  F  V  Y  F  D  V  L  I  A  *  I  F  C  V  L  H  S  F  F  P  P  N  R  C  L  R  K  P  F  V  E  R  L  P  P  S  S  S  S  L  V  T  L  E  T  T  E  A  F  G  L  E  A  D  D  V  K  Y  V  T  Q  H  F  R  Y  T  F  V  N  E  K  V  K  R  S  A  R  Y  Y  S  P  G  W  R  T  W  A  A  V  A  I  Q  L  A  W  R  R  Y  R  H  R  L  T  L  T  S  L  S  F  I  R  P  R  R  P  L  S  R  S  S  S  L  T  E  D  R  L  R  L  Y  T  A  L  L  T  S  P  K  P  N  Q  D  D  F  D  F  *  K  E  Q  Q  T  N  G  M  L  P  S  F  C  Y  E  I  G  A  H  P  P  P  S  I  C  P  S  I  I  H  S  C  D  M  *  *  S  L  R  F  N  L  C  E  F  V  D  T  E  F  K  K  E  K  K  I  L  I  Y  S  L  *  I  L  R  S  C  R  T  S  Q  I   </first_frame>
            <second_frame>  R  T  *  R  W  C  Q  K  L  L  H  V  G  P  W  K  L  Q  R  R  R  T  S  L  M  V  S  L  G  V  R  V  V  V  C  I  W  V  I  N  L  K  N  R  S  S  K  L  E  W  *  C  T  Q  G  *  F  T  L  G  L  M  V  P  S  Q  *  S  L  K  *  N  D  N  T  F  G  F  P  E  S  W  V  N  R  L  S  Y  I  L  M  C  *  *  P  E  Y  F  V  F  F  I  H  F  F  P  P  T  G  A  S  G  N  P  S  W  S  V  Y  R  L  P  P  H  R  *  *  L  S  R  P  Q  K  R  L  A  S  K  Q  M  M  S  S  M  S  L  N  I  S  A  T  H  L  *  M  R  K  *  R  E  A  P  D  I  I  L  Q  D  G  E  L  G  L  P  L  L  F  S  W  P  G  G  D  I  D  T  G  *  L  S  R  R  C  P  S  F  D  Q  D  D  R  C  L  D  L  L  H  *  Q  K  T  D  S  G  Y  I  Q  L  C  S  L  H  Q  S  L  I  R  T  I  L  I  F  K  K  S  N  K  Q  M  E  C  Y  L  L  S  V  M  R  *  E  H  I  P  L  P  L  Y  V  L  Q  L  S  I  H  V  I  C  S  S  L  F  V  S  I  Y  V  N  S  W  T  P  S  L  R  K  K  R  R  F  *  S  T  V  C  R  F  *  G  H  V  E  H  L  R  S  </second_frame>
            <third_frame>   E  L  R  D  G  V  K  S  C  C  M  L  G  P  G  N  F  S  G  D  E  L  L  S  W  *  V  *  E  *  E  *  L  F  V  F  G  *  L  I  *  K  T  D  L  V  N  *  N  G  S  V  H  K  V  N  S  L  *  D  *  W  S  H  P  N  D  H  *  N  K  M  I  T  P  L  A  S  Q  N  L  G  *  T  G  F  R  I  F  *  C  V  N  S  L  N  I  L  C  S  S  F  I  F  S  P  Q  Q  V  P  P  E  T  L  R  G  A  S  T  A  F  L  L  I  A  S  D  S  R  D  H  R  S  V  W  P  R  S  R  *  C  Q  V  C  H  S  T  F  P  L  H  I  C  E  *  E  S  E  E  K  R  Q  I  L  F  S  R  M  A  N  L  G  C  R  C  Y  S  V  G  L  E  E  I  *  T  P  A  D  S  H  V  V  V  L  H  S  T  K  T  T  V  V  S  I  F  F  I  N  R  R  Q  T  Q  A  I  Y  S  F  A  H  F  T  K  A  *  S  G  R  F  *  F  L  K  R  A  T  N  K  W  N  V  T  F  F  L  L  *  D  R  S  T  S  P  S  L  Y  M  S  F  N  Y  P  F  M  *  Y  V  V  V  S  S  F  Q  F  M  *  I  R  G  H  R  V  *  E  R  K  E  D  F  D  L  Q  S  V  D  F  E  V  M  *  N  I  S  D  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19196" stop="19606"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFCVLHSFFPPNRCLRKPFVERLPPSSSSLVTLETTEAFGLEADDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRSSSLTEDRLRLYTALLTSPKPNQDDFDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23958" PGL_stop="19857"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23958" e_stop="23729"/>
            <exon e_start="23104" e_stop="23034"/>
            <exon e_start="22683" e_stop="22602"/>
            <exon e_start="22480" e_stop="22362"/>
            <exon e_start="20487" e_stop="20410"/>
            <exon e_start="20326" e_stop="20207"/>
            <exon e_start="20110" e_stop="19857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.876" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23958" e_stop="23729" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.907">
            <gDNA_intron_boundary i_start="23728" i_stop="23105" i_length="624"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23104" e_stop="23034" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.952">
            <gDNA_intron_boundary i_start="23033" i_stop="22684" i_length="350"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22683" e_stop="22602" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="22601" i_stop="22481" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22480" e_stop="22362" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.982">
            <gDNA_intron_boundary i_start="22361" i_stop="20488" i_length="1874"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20487" e_stop="20410" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.797">
            <gDNA_intron_boundary i_start="20409" i_stop="20327" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20326" e_stop="20207" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.876">
            <gDNA_intron_boundary i_start="20206" i_stop="20111" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="0.988">
            <gDNA_exon_boundary e_start="20110" e_stop="19857" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23958" stop="23729"/>
              <exon start="23104" stop="23034"/>
              <exon start="22683" stop="22602"/>
              <exon start="22480" stop="22362"/>
              <exon start="20487" stop="20410"/>
              <exon start="20326" stop="20207"/>
              <exon start="20110" stop="19857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATTAAAGTCAACTTTTAGCTTCACTAAACGACAATATTCATTCCCCTAAATTTGTTTATGGCCTGAAATTGATAGTTATCATCGGAATACCACCATGGCTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCAT : ATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAG : TTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTG : TCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTG : TTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCA : GCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGAAGCTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGG : AAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTCTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAAAAGATACAA</gDNA_template>
            <first_frame> *  I  K  V  N  F  *  L  H  *  T  T  I  F  I  P  L  N  L  F  M  A  *  N  *  *  L  S  S  E  Y  H  H  G  C  R  R  P  P  H  A  T  A  V  Q  R  Q  T  L  V  A  L  P  L  H  *  I  H  I  S  G  *  A  S  A  P  A  *  S  F  *  Q  S  L  L  S  I :   *  T  W  K  A  G  E  E  C  H  K  D  *  E  H  K  Q  I  F  C  S  I  Q   : V  S  N  Y  C  T  K  E  L  L  H  A  T  S  G  R  Y  S  C  T  W  G  K  F  D  C  H  C :   L  Q  V  Y  *  T  T  *  E  Q  *  E  A  Y  R  S  K  D  Q  S  K  V  Q  D  H  K  F  E  G  E  R  R  N  *  L  C  T  *  V   : V  *  *  T  K  G  *  S  L  Y  *  A  Y  S  K  G  G  V  L  G  P  *  T  P  F  S   : S  T  G  *  T  K  T  S  A  G  P  S  *  G  C  N  R  S  *  E  E  T  S  C  *  H  R  S  E  S  C  G  R  R  L  N  S  R  *  M   : E  R  A  E  G  E  V  S  C  S  P  T  S  *  G  S  G  F  S  K  A  V  E  S  V  Y  V  S  A  S  F  S  R  I  A  M  Y  N  Q  I  C  T  S  Y  Y  C  L  S  L  D  *  W  C  R  R  L  M  Q  C  F  M  *  R  R  T  L  S  G  D  L  R  L  Y  K  I  R  N  N  Y  I  Q  E  K  I  Q </first_frame>
            <second_frame>  K  L  K  S  T  F  S  F  T  K  R  Q  Y  S  F  P  *  I  C  L  W  P  E  I  D  S  Y  H  R  N  T  T  M  A  A  V  D  H  R  T  R  Q  Q  S  N  G  K  L  S  W  L  C  P  F  T  K  S  I  F  P  A  K  R  R  L  R  L  D  P  S  N  N  L  Y  F  P   : Y  E  P  G  K  Q  A  K  S  A  I  K  I  K  N  T  S  K  S  F  V  A  F  K  :  F  Q  T  T  A  P  K  S  C  Y  M  R  P  P  G  G  I  L  V  P  G  E  S  L  I  A  T   : V  F  K  F  I  E  Q  P  E  N  N  E  K  P  I  D  Q  K  T  K  V  K  F  K  I  I  S  L  K  V  K  E  G  T  D  Y  V  P  E  L  :  F  D  E  Q  K  D  K  V  C  I  E  R  T  L  K  V  V  F  L  D  P  E  R  P  S  P  :  A  L  D  K  L  K  R  Q  L  A  Q  A  E  A  A  T  E  A  E  K  K  P  P  V  D  T  G  P  K  V  V  G  E  G  L  I  V  D  E  W  :  K  E  R  R  E  R  Y  L  A  R  Q  Q  V  E  A  V  D  S  V  K  Q  *  R  V  F  M  *  V  R  L  F  P  E  *  Q  C  I  I  R  Y  A  L  L  I  I  A  F  L  W  I  D  G  V  E  G  *  C  N  A  S  C  K  E  E  H  *  V  E  I  *  D  Y  I  R  L  E  I  I  I  F  R  K  R  Y   </second_frame>
            <third_frame>   N  *  S  Q  L  L  A  S  L  N  D  N  I  H  S  P  K  F  V  Y  G  L  K  L  I  V  I  I  G  I  P  P  W  L  P  S  T  T  A  R  D  S  S  P  T  A  N  S  R  G  F  A  P  S  L  N  P  Y  F  R  L  S  V  G  S  G  L  I  L  L  T  I  S  T  F  H  :  M  N  L  E  S  R  R  R  V  P  *  R  L  R  T  Q  A  N  L  L  *  H  S  S :   F  K  L  L  H  Q  R  A  A  T  C  D  L  R  E  V  F  L  Y  L  G  K  V  *  L  P  L  :  S  S  S  L  L  N  N  L  R  T  M  R  S  L  *  I  K  R  P  K  *  S  S  R  S  *  V  *  R  *  K  K  E  L  I  M  Y  L  S  C :   L  M  N  K  R  I  K  S  V  L  S  V  L  *  R  W  C  S  W  T  L  N  A  L  L  Q :   H  W  I  N  *  N  V  S  W  P  K  L  R  L  Q  Q  K  L  R  R  N  L  L  L  T  Q  V  R  K  L  W  E  K  A  *  *  *  M  N  G :   K  S  G  G  R  G  I  L  L  A  N  K  L  R  Q  W  I  Q  *  S  S  R  E  C  L  C  K  C  V  F  F  Q  N  S  N  V  *  S  D  M  H  F  L  L  L  P  F  F  G  L  M  V  *  K  V  N  A  M  L  H  V  K  K  N  T  E  W  R  F  K  I  I  *  D  *  K  *  L  Y  S  G  K  D  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23906" stop="23729"/>
                    <exon start="23104" stop="23034"/>
                    <exon start="22683" stop="22602"/>
                    <exon start="22480" stop="22362"/>
                    <exon start="20487" stop="20410"/>
                    <exon start="20326" stop="20207"/>
                    <exon start="20110" stop="20045"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICLWPEIDSYHRNTTMAAVDHRTRQQSNGKLSWLCPFTKSIFPAKRRLRLDPSNNLYFPYEPGKQAKSAIKIKNTSKSFVAFKFQTTAPKSCYMRPPGGILVPGESLIATVFKFIEQPENNEKPIDQKTKVKFKIISLKVKEGTDYVPELFDEQKDKVCIERTLKVVFLDPERPSPALDKLKRQLAQAEAATEAEKKPPVDTGPKVVGEGLIVDEWKERRERYLARQQVEAVDSVKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="29458" PGL_stop="26848"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29458" e_stop="29375"/>
            <exon e_start="29206" e_stop="29083"/>
            <exon e_start="28961" e_stop="28913"/>
            <exon e_start="28524" e_stop="28442"/>
            <exon e_start="28278" e_stop="28211"/>
            <exon e_start="27455" e_stop="27381"/>
            <exon e_start="27302" e_stop="27215"/>
            <exon e_start="27138" e_stop="27022"/>
            <exon e_start="26916" e_stop="26848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.760" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="0.991"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29458" e_stop="29375" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="0.987">
            <gDNA_intron_boundary i_start="29374" i_stop="29207" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29206" e_stop="29083" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="29082" i_stop="28962" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28961" e_stop="28913" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28912" i_stop="28525" i_length="388"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28524" e_stop="28442" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.790">
            <gDNA_intron_boundary i_start="28441" i_stop="28279" i_length="163"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28278" e_stop="28211" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.863">
            <gDNA_intron_boundary i_start="28210" i_stop="27456" i_length="755"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27455" e_stop="27381" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.760">
            <gDNA_intron_boundary i_start="27380" i_stop="27303" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27302" e_stop="27215" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="27214" i_stop="27139" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="27138" e_stop="27022" e_length="117"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27021" i_stop="26917" i_length="105"/>
          </intron>
          <exon e_serial="9" e_score="0.957">
            <gDNA_exon_boundary e_start="26916" e_stop="26848" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29458" stop="29375"/>
              <exon start="29206" stop="29083"/>
              <exon start="28961" stop="28913"/>
              <exon start="28524" stop="28442"/>
              <exon start="28278" stop="28211"/>
              <exon start="27455" stop="27381"/>
              <exon start="27302" stop="27215"/>
              <exon start="27138" stop="27022"/>
              <exon start="26916" stop="26848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAGAATCCTGGTATTAACTGCCAGTCCGTGAAGTCGTTCCTGAATCAAGTGAAAAATGGAAAAGAAATGAAAGTTGACAG : CTGGCATATTGTAATGAAAATGAGGGCTCCTAAAGAAGGTTCTTGTGATCCTATTGCACCTCTTGAGCTACCACATTCATTGCATGCTTTTCGCGGTGCGCCTCAAGCTGATACTTTGAACAAG : GAAGGCTATCATGTATTTCGGGGAGGATTTTGGAACTACTTCAGCATAG : GAATGGATGCTCAAGTTTCACATGCATTTCACAGCAAGAGGAAGCTCCATCCAGAAAAGTTCAAACACCAGTTGGTTAATCAG : AGGAATTATGCAAAGCTTGTCTGTAAACAAGGATGGTTTTGCACTTCTTTCATGCACCCATCGTCAAG : AAACATTGCTCAGTTAGCAAATGTCAAAATAATGAAAAGATCAGGTGAATGGATAGACCTACACATTCCTAGCAG : CATTAGGTCTATTGTCTGCCTTAATTTGCCCAGCTTTTCGGGTGGACTTAATCCTTGGGGAAAACCTAACAAGCAGAAGCTGCATGAG : AGGGATCTTACTCCTCCATATGTTGATGATGGTCTACTTGAAGTTGTTGGTTTTCGCGATGCTTGGCATGGACTTATTTTGTTTACTCCAGGAGGGCACGGAACACGTCTTGCACAG : GCGAATAGAATACGATTTGAGTTTCACAAGGGTGCTAGTGAGCATACATTTATGAGAATGGATGGGGAA</gDNA_template>
            <first_frame> K  K  E  S  W  Y  *  L  P  V  R  E  V  V  P  E  S  S  E  K  W  K  R  N  E  S  *  Q  :  L  A  Y  C  N  E  N  E  G  S  *  R  R  F  L  *  S  Y  C  T  S  *  A  T  T  F  I  A  C  F  S  R  C  A  S  S  *  Y  F  E  Q   : G  R  L  S  C  I  S  G  R  I  L  E  L  L  Q  H  R :   N  G  C  S  S  F  T  C  I  S  Q  Q  E  E  A  P  S  R  K  V  Q  T  P  V  G  *  S   : E  E  L  C  K  A  C  L  *  T  R  M  V  L  H  F  F  H  A  P  I  V  K  :  K  H  C  S  V  S  K  C  Q  N  N  E  K  I  R  *  M  D  R  P  T  H  S  *  Q  :  H  *  V  Y  C  L  P  *  F  A  Q  L  F  G  W  T  *  S  L  G  K  T  *  Q  A  E  A  A  *   : E  G  S  Y  S  S  I  C  *  *  W  S  T  *  S  C  W  F  S  R  C  L  A  W  T  Y  F  V  Y  S  R  R  A  R  N  T  S  C  T   : G  E  *  N  T  I  *  V  S  Q  G  C  *  *  A  Y  I  Y  E  N  G  W  G  </first_frame>
            <second_frame>  K  K  N  P  G  I  N  C  Q  S  V  K  S  F  L  N  Q  V  K  N  G  K  E  M  K  V  D  S :   W  H  I  V  M  K  M  R  A  P  K  E  G  S  C  D  P  I  A  P  L  E  L  P  H  S  L  H  A  F  R  G  A  P  Q  A  D  T  L  N  K  :  E  G  Y  H  V  F  R  G  G  F  W  N  Y  F  S  I   : G  M  D  A  Q  V  S  H  A  F  H  S  K  R  K  L  H  P  E  K  F  K  H  Q  L  V  N  Q  :  R  N  Y  A  K  L  V  C  K  Q  G  W  F  C  T  S  F  M  H  P  S  S  R :   N  I  A  Q  L  A  N  V  K  I  M  K  R  S  G  E  W  I  D  L  H  I  P  S  S :   I  R  S  I  V  C  L  N  L  P  S  F  S  G  G  L  N  P  W  G  K  P  N  K  Q  K  L  H  E  :  R  D  L  T  P  P  Y  V  D  D  G  L  L  E  V  V  G  F  R  D  A  W  H  G  L  I  L  F  T  P  G  G  H  G  T  R  L  A  Q  :  A  N  R  I  R  F  E  F  H  K  G  A  S  E  H  T  F  M  R  M  D  G  E </second_frame>
            <third_frame>   K  R  I  L  V  L  T  A  S  P  *  S  R  S  *  I  K  *  K  M  E  K  K  *  K  L  T   : A  G  I  L  *  *  K  *  G  L  L  K  K  V  L  V  I  L  L  H  L  L  S  Y  H  I  H  C  M  L  F  A  V  R  L  K  L  I  L  *  T  R :   K  A  I  M  Y  F  G  E  D  F  G  T  T  S  A  *  :  E  W  M  L  K  F  H  M  H  F  T  A  R  G  S  S  I  Q  K  S  S  N  T  S  W  L  I  R :   G  I  M  Q  S  L  S  V  N  K  D  G  F  A  L  L  S  C  T  H  R  Q   : E  T  L  L  S  *  Q  M  S  K  *  *  K  D  Q  V  N  G  *  T  Y  T  F  L  A   : A  L  G  L  L  S  A  L  I  C  P  A  F  R  V  D  L  I  L  G  E  N  L  T  S  R  S  C  M  R :   G  I  L  L  L  H  M  L  M  M  V  Y  L  K  L  L  V  F  A  M  L  G  M  D  L  F  C  L  L  Q  E  G  T  E  H  V  L  H  R :   R  I  E  Y  D  L  S  F  T  R  V  L  V  S  I  H  L  *  E  W  M  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29457" stop="29375"/>
                    <exon start="29206" stop="29083"/>
                    <exon start="28961" stop="28913"/>
                    <exon start="28524" stop="28442"/>
                    <exon start="28278" stop="28211"/>
                    <exon start="27455" stop="27381"/>
                    <exon start="27302" stop="27215"/>
                    <exon start="27138" stop="27022"/>
                    <exon start="26916" stop="26848"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKNPGINCQSVKSFLNQVKNGKEMKVDSWHIVMKMRAPKEGSCDPIAPLELPHSLHAFRGAPQADTLNKEGYHVFRGGFWNYFSIGMDAQVSHAFHSKRKLHPEKFKHQLVNQRNYAKLVCKQGWFCTSFMHPSSRNIAQLANVKIMKRSGEWIDLHIPSSIRSIVCLNLPSFSGGLNPWGKPNKQKLHERDLTPPYVDDGLLEVVGFRDAWHGLILFTPGGHGTRLAQANRIRFEFHKGASEHTFMRMDGE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="38284" PGL_stop="37204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38284" e_stop="38076"/>
            <exon e_start="37979" e_stop="37820"/>
            <exon e_start="37752" e_stop="37212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.759" acc_prob="0.983" e_score="0.962"/>
          <exon-intron don_prob="0.963" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="38284" e_stop="38076" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.759" acc_prob="0.983">
            <gDNA_intron_boundary i_start="38075" i_stop="37980" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37979" e_stop="37820" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.979">
            <gDNA_intron_boundary i_start="37819" i_stop="37753" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="37752" e_stop="37212" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38284" stop="38076"/>
              <exon start="37979" stop="37820"/>
              <exon start="37752" stop="37212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322501" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGAAGAAAATATGATAGAGCCAGCCATCGAAGGGACCTTGAATGTTCTGAAATCGTGCTTGAAATCCAATTCTGTTAAAAAAGTTGTATTCACATCATCAATCAGTACCATCACAGCCAGAGACAACTTTGGGAGATGGAGACCTTTTGTCGATGAATCTTGCAAAGTACCTATCCAACATGTTAAGCACACAAAACCAACTGGTTGG : GTTTATGTACTACTAAAGGTTTTGACAGAGGATGCAGCATTTCAGTTTGCAAAAGAAAATGGCATTAATTTGGTTTCAACGATAACACCAACTATAGCTGGTCCATTCCTCACTCCTACAGTTCCATCAAGCATTCAAGTTCTCTTGTCACCAATAACAG : ATGATCCTGATATGTTAGCTATACTCACCGCTGTAAACACAAGAATGGGATCAATAGCATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAGGTTATTCCATTCGATTTCTACTGCAATAATTAAATCCACATGAAGTTTATATATAGTCTAATTATCTGTGTTACAGGCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTTTTTAA</gDNA_template>
            <first_frame> S  K  K  I  *  *  S  Q  P  S  K  G  P  *  M  F  *  N  R  A  *  N  P  I  L  L  K  K  L  Y  S  H  H  Q  S  V  P  S  Q  P  E  T  T  L  G  D  G  D  L  L  S  M  N  L  A  K  Y  L  S  N  M  L  S  T  Q  N  Q  L  V  G :   F  M  Y  Y  *  R  F  *  Q  R  M  Q  H  F  S  L  Q  K  K  M  A  L  I  W  F  Q  R  *  H  Q  L  *  L  V  H  S  S  L  L  Q  F  H  Q  A  F  K  F  S  C  H  Q  *  Q  :  M  I  L  I  C  *  L  Y  S  P  L  *  T  Q  E  W  D  Q  *  H  *  L  I  *  R  I  Y  V  A  P  T  Y  S  S  W  R  I  L  K  H  K  D  D  I  Y  V  V  L  R  V  G  H  C  L  K  L  S  I  T  L  K  T  S  I  L  T  L  M  Q  R  G  Y  S  I  R  F  L  L  Q  *  L  N  P  H  E  V  Y  I  *  S  N  Y  L  C  Y  R  R  G  G  H  D  S  V  I  P  S  E  I  S  S  K  K  L  R  G  L  G  F  S  F  K  Y  E  I  N  D  I  I  R  D  T  I  T  S  C  I  H  H  G  F  L  A  S  I  Q  K  *  E  L  Q  I  T  C  T  K  T  L  T  L  T  L  M  Y  Q  Y  T  P  F  N  I  N  E  V  E  N  L  I  I  F  L  </first_frame>
            <second_frame>  R  R  K  Y  D  R  A  S  H  R  R  D  L  E  C  S  E  I  V  L  E  I  Q  F  C  *  K  S  C  I  H  I  I  N  Q  Y  H  H  S  Q  R  Q  L  W  E  M  E  T  F  C  R  *  I  L  Q  S  T  Y  P  T  C  *  A  H  K  T  N  W  L   : G  L  C  T  T  K  G  F  D  R  G  C  S  I  S  V  C  K  R  K  W  H  *  F  G  F  N  D  N  T  N  Y  S  W  S  I  P  H  S  Y  S  S  I  K  H  S  S  S  L  V  T  N  N  R :   *  S  *  Y  V  S  Y  T  H  R  C  K  H  K  N  G  I  N  S  I  S  S  Y  R  G  Y  M  S  R  P  H  I  P  H  G  E  Y  *  S  T  R  T  I  Y  M  L  C  S  E  L  G  I  V  *  S  Y  R  S  P  *  K  R  V  S  L  P  *  C  R  E  V  I  P  F  D  F  Y  C  N  N  *  I  H  M  K  F  I  Y  S  L  I  I  C  V  T  G  A  E  D  M  I  Q  *  S  P  R  R  F  H  Q  R  N  *  E  D  S  D  F  L  S  S  M  K  S  T  I  S  *  E  I  Q  L  L  V  V  Y  I  M  D  S  *  P  Q  F  K  S  K  N  C  K  L  H  V  P  K  P  *  L  L  L  *  C  I  S  I  L  L  L  I  S  M  K  *  K  I  L  L  F  F  * </second_frame>
            <third_frame>   E  E  N  M  I  E  P  A  I  E  G  T  L  N  V  L  K  S  C  L  K  S  N  S  V  K  K  V  V  F  T  S  S  I  S  T  I  T  A  R  D  N  F  G  R  W  R  P  F  V  D  E  S  C  K  V  P  I  Q  H  V  K  H  T  K  P  T  G  W  :  V  Y  V  L  L  K  V  L  T  E  D  A  A  F  Q  F  A  K  E  N  G  I  N  L  V  S  T  I  T  P  T  I  A  G  P  F  L  T  P  T  V  P  S  S  I  Q  V  L  L  S  P  I  T   : D  D  P  D  M  L  A  I  L  T  A  V  N  T  R  M  G  S  I  A  L  A  H  I  E  D  I  C  R  A  H  I  F  L  M  E  N  I  K  A  Q  G  R  Y  I  C  C  A  Q  S  W  A  L  S  E  V  I  D  H  L  K  N  E  Y  P  Y  L  D  A  E  R  L  F  H  S  I  S  T  A  I  I  K  S  T  *  S  L  Y  I  V  *  L  S  V  L  Q  A  R  R  T  *  F  S  D  P  L  G  D  F  I  K  E  I  E  R  T  R  I  F  F  Q  V  *  N  Q  R  Y  H  K  R  Y  N  Y  *  L  Y  T  S  W  I  L  S  L  N  S  K  V  R  I  A  N  Y  M  Y  Q  N  L  N  S  Y  F  D  V  S  V  Y  S  F  *  Y  Q  *  S  R  K  S  Y  Y  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38282" stop="38076"/>
                    <exon start="37979" stop="37820"/>
                    <exon start="37752" stop="37499"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EENMIEPAIEGTLNVLKSCLKSNSVKKVVFTSSISTITARDNFGRWRPFVDESCKVPIQHVKHTKPTGWVYVLLKVLTEDAAFQFAKENGINLVSTITPTIAGPFLTPTVPSSIQVLLSPITDDPDMLAILTAVNTRMGSIALAHIEDICRAHIFLMENIKAQGRYICCAQSWALSEVIDHLKNEYPYLDAERLFHSISTAIIKST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37694" e_stop="37542"/>
            <exon e_start="37465" e_stop="37204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37694" e_stop="37542" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37541" i_stop="37466" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="37465" e_stop="37204" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37694" stop="37542"/>
              <exon start="37465" stop="37204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322500" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAG : GCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTTTTTAAGATCTTAT</gDNA_template>
            <first_frame> I  S  S  Y  R  G  Y  M  S  R  P  H  I  P  H  G  E  Y  *  S  T  R  T  I  Y  M  L  C  S  E  L  G  I  V  *  S  Y  R  S  P  *  K  R  V  S  L  P  *  C  R  E  :  A  R  R  T  *  F  S  D  P  L  G  D  F  I  K  E  I  E  R  T  R  I  F  F  Q  V  *  N  Q  R  Y  H  K  R  Y  N  Y  *  L  Y  T  S  W  I  L  S  L  N  S  K  V  R  I  A  N  Y  M  Y  Q  N  L  N  S  Y  F  D  V  S  V  Y  S  F  *  Y  Q  *  S  R  K  S  Y  Y  F  F  K  I  L  </first_frame>
            <second_frame>  L  A  H  I  E  D  I  C  R  A  H  I  F  L  M  E  N  I  K  A  Q  G  R  Y  I  C  C  A  Q  S  W  A  L  S  E  V  I  D  H  L  K  N  E  Y  P  Y  L  D  A  E  R :   R  G  G  H  D  S  V  I  P  S  E  I  S  S  K  K  L  R  G  L  G  F  S  F  K  Y  E  I  N  D  I  I  R  D  T  I  T  S  C  I  H  H  G  F  L  A  S  I  Q  K  *  E  L  Q  I  T  C  T  K  T  L  T  L  T  L  M  Y  Q  Y  T  P  F  N  I  N  E  V  E  N  L  I  I  F  L  R  S  Y </second_frame>
            <third_frame>   *  L  I  *  R  I  Y  V  A  P  T  Y  S  S  W  R  I  L  K  H  K  D  D  I  Y  V  V  L  R  V  G  H  C  L  K  L  S  I  T  L  K  T  S  I  L  T  L  M  Q  R   : G  A  E  D  M  I  Q  *  S  P  R  R  F  H  Q  R  N  *  E  D  S  D  F  L  S  S  M  K  S  T  I  S  *  E  I  Q  L  L  V  V  Y  I  M  D  S  *  P  Q  F  K  S  K  N  C  K  L  H  V  P  K  P  *  L  L  L  *  C  I  S  I  L  L  L  I  S  M  K  *  K  I  L  L  F  F  *  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37693" stop="37542"/>
                    <exon start="37465" stop="37312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAHIEDICRAHIFLMENIKAQGRYICCAQSWALSEVIDHLKNEYPYLDAERRGGHDSVIPSEISSKKLRGLGFSFKYEINDIIRDTITSCIHHGFLASIQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41512" PGL_stop="45240"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41512" e_stop="41571"/>
            <exon e_start="42224" e_stop="44199"/>
            <exon e_start="45193" e_stop="45240"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.882" e_score="0.971"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41512" e_stop="41571" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41572" i_stop="42223" i_length="652"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="42224" e_stop="44199" e_length="1976"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.882">
            <gDNA_intron_boundary i_start="44200" i_stop="45192" i_length="993"/>
          </intron>
          <exon e_serial="3" e_score="0.562">
            <gDNA_exon_boundary e_start="45193" e_stop="45240" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41512" stop="41571"/>
              <exon start="42224" stop="44099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43659" stop="44199"/>
              <exon start="45193" stop="45240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTCTCCAAATTTTATCAATCTACAAGTTAGATTCCTCCTTCTGCAGATTATATCAG : GTGGATTTCGGTGAAGCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGAAGGCCTCGTAGCAAGAAAGGAGTTATCTGGAACTACCATATACAGGAGTTTAAAGTGTAAGGAGCCGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGCTGTTGGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGAGTTACTGTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTTTATTACTTAACCAGACAATAGGATTGATCAAGTAATTATACTCATGTTATGTAGTTTCAATTTTCTGAAATTTTAGTTGTTTATTTTTCAAGTTATCGTTTGATATTATTTGTTAAAACTTATAAACAATTATATCTCGTCCTTGATGATTTGTTGAGCAACTTTGGAGATTATA : AGAAGAAAAAGAAAACAGAATGAGCCAAGCTAAACACATTTATAAATG</gDNA_template>
            <first_frame> I  F  L  Q  I  L  S  I  Y  K  L  D  S  S  F  C  R  L  Y  Q  :  V  D  F  G  E  A  D  I  K  C  *  *  E  R  V  C  A  *  S  S  *  *  Q  P  Y  S  M  D  S  H  H  L  V  A  Y  G  V  T  G  S  D  L  S  Y  S  S  C  P  T  V  S  P  L  E  N  R  P  F  G  T  S  K  F  D  S  G  N  S  P  L  V  N  Y  F  N  S  E  T  F  N  T  V  S  D  Y  Q  E  Q  P  S  C  T  E  N  L  S  G  A  S  S  S  S  G  S  S  L  D  Y  N  Q  Y  F  H  R  P  S  P  S  E  D  H  L  P  E  A  P  Y  S  R  N  M  K  H  T  L  L  Q  L  E  S  A  L  M  G  P  D  K  E  A  M  K  S  S  P  Y  L  G  E  N  M  G  A  Q  T  S  G  Q  R  Y  K  A  W  N  K  E  A  Q  V  V  R  H  Q  Q  S  V  V  S  I  L  N  G  I  Q  S  D  K  R  D  N  V  M  E  D  L  P  L  Q  G  V  P  S  S  N  L  K  Q  L  L  I  A  C  A  R  A  L  A  E  N  K  L  D  D  F  E  I  L  V  A  K  A  R  S  V  V  S  V  T  G  D  P  I  Q  R  L  G  A  Y  I  V  E  G  L  V  A  R  K  E  L  S  G  T  T  I  Y  R  S  L  K  C  K  E  P  A  G  K  D  L  F  S  Y  M  Y  I  L  Y  E  I  C  P  Y  L  K  F  G  Y  M  A  A  N  G  A  I  V  E  A  C  R  N  E  D  R  I  H  I  I  D  F  Q  I  A  Q  G  T  Q  W  M  T  L  L  Q  A  L  A  A  R  P  G  G  A  P  Y  V  R  I  T  G  I  D  D  P  V  S  Q  Y  A  R  G  D  G  L  A  A  V  A  R  R  L  S  A  I  S  E  E  F  N  I  A  V  E  F  H  A  V  P  V  F  A  P  E  I  T  W  D  M  L  D  V  R  P  G  E  A  L  A  V  N  F  P  L  Q  L  H  H  T  P  D  E  S  V  D  V  N  N  P  R  D  G  L  I  R  M  I  K  S  L  S  P  K  I  V  T  L  V  E  Q  E  S  N  T  N  T  A  P  F  L  P  R  F  V  E  A  L  D  Y  Y  H  A  M  F  E  S  I  D  V  T  L  L  R  D  M  K  E  R  I  N  V  E  Q  H  C  L  A  R  D  I  V  N  V  I  A  C  E  G  K  E  R  V  E  R  H  E  L  L  G  K  W  K  S  R  F  M  M  A  G  F  Q  Q  Y  P  L  S  S  Y  V  N  S  V  I  K  D  L  M  K  R  Y  S  E  H  Y  T  L  V  E  K  D  G  A  M  L  L  G  W  K  E  R  N  L  V  S  A  S  A  W  F  *  R  V  T  V  H  Y  V  E  T  D  G  *  P  S  F  L  L  L  N  Q  T  I  G  L  I  K  *  L  Y  S  C  Y  V  V  S  I  F  *  N  F  S  C  L  F  F  K  L  S  F  D  I  I  C  *  N  L  *  T  I  I  S  R  P  *  *  F  V  E  Q  L  W  R  L  * :   E  E  K  E  N  R  M  S  Q  A  K  H  I  Y  K   </first_frame>
            <second_frame>  F  F  S  K  F  Y  Q  S  T  S  *  I  P  P  S  A  D  Y  I  R :   W  I  S  V  K  Q  I  L  S  V  S  E  K  E  F  A  H  R  A  A  N  D  S  R  I  V  W  T  R  T  I  W  L  L  M  V  *  P  V  V  I  C  R  I  L  H  A  L  L  L  V  L  *  R  I  D  H  L  V  H  R  N  L  I  Q  E  I  R  H  L  *  T  I  L  T  L  R  P  S  T  Q  *  V  I  T  R  S  S  P  A  V  Q  R  I  F  Q  V  L  V  L  Q  V  V  P  H  W  I  I  T  N  I  S  I  D  Q  A  P  R  K  I  I  F  Q  K  L  L  T  V  G  T  *  N  I  L  C  C  S  W  S  L  L  *  W  G  Q  T  K  R  Q  *  N  P  A  L  I  L  V  K  I  W  G  H  K  H  Q  V  R  G  I  K  R  G  T  R  K  P  K  L  C  V  I  N  N  Q  *  F  Q  S  L  M  E  F  K  V  I  S  E  T  M  *  W  R  T  C  P  C  R  V  F  R  L  A  I  *  S  S  C  L  *  H  A  P  E  L  L  L  K  T  S  *  M  I  L  K  Y  W  L  L  R  Q  G  V  L  C  P  L  L  E  I  P  S  S  V  L  V  L  T  L  *  K  A  S  *  Q  E  R  S  Y  L  E  L  P  Y  T  G  V  *  S  V  R  S  R  L  V  R  T  C  S  P  T  C  I  S  S  M  K  Y  V  L  T  *  S  S  A  T  W  L  Q  M  V  P  *  *  K  H  A  E  M  K  I  A  S  T  L  *  T  S  K  L  H  R  G  P  N  G  *  L  S  Y  K  L  L  Q  H  D  P  V  V  P  P  T  Y  V  L  Q  E  L  M  I  Q  F  H  S  T  L  G  E  M  D  W  L  Q  L  P  D  G  Y  Q  Q  F  L  R  N  S  T  L  L  L  S  F  M  Q  C  Q  F  L  L  R  K  S  L  G  I  C  L  M  *  G  L  V  R  L  W  L  *  T  F  L  C  N  F  T  T  P  L  M  R  A  L  T  *  I  T  L  E  M  V  S  L  G  *  *  S  R  L  A  P  R  *  S  L  W  W  S  K  N  Q  T  R  T  Q  L  H  F  S  L  G  L  *  K  L  *  I  T  T  M  Q  C  L  S  P  *  M  *  P  Y  *  G  T  *  R  S  G  S  M  W  N  S  T  V  W  L  G  I  *  *  M  S  *  H  V  R  A  R  K  E  *  N  V  T  S  Y  W  G  S  G  N  P  G  S  *  W  Q  V  F  S  N  I  L  *  A  L  M  *  I  Q  *  L  R  T  S  *  S  V  T  R  S  I  I  H  W  W  R  K  T  E  L  C  C  W  G  G  R  S  G  I  *  S  L  R  L  L  G  F  N  E  L  L  F  I  M  W  K  Q  M  V  S  L  L  F  Y  Y  L  T  R  Q  *  D  *  S  S  N  Y  T  H  V  M  *  F  Q  F  S  E  I  L  V  V  Y  F  S  S  Y  R  L  I  L  F  V  K  T  Y  K  Q  L  Y  L  V  L  D  D  L  L  S  N  F  G  D  Y   : K  K  K  K  K  T  E  *  A  K  L  N  T  F  I  N  </second_frame>
            <third_frame>   F  S  P  N  F  I  N  L  Q  V  R  F  L  L  L  Q  I  I  S   : G  G  F  R  *  S  R  Y  *  V  L  V  R  K  S  L  R  I  E  Q  L  M  T  A  V  *  Y  G  L  A  P  F  G  C  L  W  C  D  R  *  *  F  V  V  F  F  M  P  Y  C  *  S  S  R  E  *  T  I  W  Y  I  E  I  *  F  R  K  F  A  T  C  E  L  F  *  L  *  D  L  Q  H  S  K  *  L  P  G  A  A  Q  L  Y  R  E  S  F  R  C  *  F  F  K  W  F  L  T  G  L  *  P  I  F  P  S  T  K  P  L  G  R  S  S  S  R  S  S  L  Q  S  E  H  E  T  Y  S  A  A  V  G  V  C  F  N  G  A  R  Q  R  G  N  E  I  Q  P  L  S  W  *  K  Y  G  G  T  N  I  R  S  E  V  *  S  V  E  Q  G  S  P  S  C  A  S  S  T  I  S  S  F  N  P  *  W  N  S  K  *  *  A  R  Q  C  N  G  G  L  A  L  A  G  C  S  V  *  Q  S  E  A  A  A  Y  S  M  R  Q  S  S  C  *  K  Q  A  R  *  F  *  N  T  G  C  *  G  K  E  C  C  V  R  Y  W  R  S  H  P  A  S  W  C  L  H  C  R  R  P  R  S  K  K  G  V  I  W  N  Y  H  I  Q  E  F  K  V  *  G  A  G  W  *  G  L  V  L  L  H  V  Y  P  L  *  N  M  S  L  P  K  V  R  L  H  G  C  K  W  C  H  S  R  S  M  Q  K  *  R  S  H  P  H  Y  R  L  P  N  C  T  G  D  P  M  D  D  S  L  T  S  S  C  S  T  T  R  W  C  P  L  R  T  Y  Y  R  N  *  *  S  S  F  T  V  R  S  G  R  W  I  G  C  S  C  Q  T  A  I  S  N  F  *  G  I  Q  H  C  C  *  V  S  C  S  A  S  F  C  S  G  N  H  L  G  Y  A  *  C  K  A  W  *  G  S  G  C  K  L  S  F  A  T  S  P  H  P  *  *  E  R  *  R  E  *  P  *  R  W  S  H  *  D  D  K  V  A  *  P  Q  D  S  H  F  G  G  A  R  I  K  H  E  H  S  S  I  S  P  *  V  C  R  S  S  R  L  L  P  C  N  V  *  V  H  R  C  D  P  T  K  G  H  E  G  A  D  Q  C  G  T  A  L  F  G  *  G  Y  S  E  C  H  S  M  *  G  Q  G  K  S  R  T  S  R  A  I  G  E  V  E  I  Q  V  H  D  G  R  F  S  A  I  S  F  E  L  L  C  E  F  S  D  *  G  P  H  E  A  L  L  G  A  L  Y  T  G  G  E  R  R  S  Y  A  V  G  V  E  G  A  E  S  S  L  C  V  C  L  V  L  T  S  Y  C  S  L  C  G  N  R  W  L  A  F  F  F  I  T  *  P  D  N  R  I  D  Q  V  I  I  L  M  L  C  S  F  N  F  L  K  F  *  L  F  I  F  Q  V  I  V  *  Y  Y  L  L  K  L  I  N  N  Y  I  S  S  L  M  I  C  *  A  T  L  E  I  I  :  R  R  K  R  K  Q  N  E  P  S  *  T  H  L  *  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42290" stop="43978"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1686</number_coding_nucleotides>
                  <number_encoded_amino_acids>562</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPYSMDSHHLVAYGVTGSDLSYSSCPTVSPLENRPFGTSKFDSGNSPLVNYFNSETFNTVSDYQEQPSCTENLSGASSSSGSSLDYNQYFHRPSPSEDHLPEAPYSRNMKHTLLQLESALMGPDKEAMKSSPYLGENMGAQTSGQRYKAWNKEAQVVRHQQSVVSILNGIQSDKRDNVMEDLPLQGVPSSNLKQLLIACARALAENKLDDFEILVAKARSVVSVTGDPIQRLGAYIVEGLVARKELSGTTIYRSLKCKEPAGKDLFSYMYILYEICPYLKFGYMAANGAIVEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPYVRITGIDDPVSQYARGDGLAAVARRLSAISEEFNIAVEFHAVPVFAPEITWDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLIRMIKSLSPKIVTLVEQESNTNTAPFLPRFVEALDYYHAMFESIDVTLLRDMKERINVEQHCLARDIVNVIACEGKERVERHELLGKWKSRFMMAGFQQYPLSSYVNSVIKDLMKRYSEHYTLVEKDGAMLLGWKERNLVSASAWF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="46986" PGL_stop="43264"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46986" e_stop="46453"/>
            <exon e_start="45729" e_stop="45130"/>
            <exon e_start="44664" e_stop="44637"/>
            <exon e_start="43272" e_stop="43264"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.415" acc_prob="0.623" e_score="0.643"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46986" e_stop="46453" e_length="534"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45729" e_stop="45130" e_length="600"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45129" i_stop="44665" i_length="465"/>
          </intron>
          <exon e_serial="3" e_score="0.643">
            <gDNA_exon_boundary e_start="44664" e_stop="44637" e_length="28"/>
          </exon>
          <intron i_serial="3" don_prob="0.415" acc_prob="0.623">
            <gDNA_intron_boundary i_start="44636" i_stop="43273" i_length="1364"/>
          </intron>
          <exon e_serial="4" e_score="0.667">
            <gDNA_exon_boundary e_start="43272" e_stop="43264" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46986" stop="46453"/>
              <exon start="45729" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45423" stop="45130"/>
              <exon start="44664" stop="44637"/>
              <exon start="43272" stop="43264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313009" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTACGGCCCTCCTCCCTCTAAAAACCCTAACTCCCTTTCTTCTTTATTCCATTTCTTCCTCTATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG : GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTCATTCTGTTTTCTTTTTCTTCTCTGTTCAAGTGAAACATAATGACAGCTCAATCTCATTATGTTTCCCTTCAATTTTAAGTTATA : AAAGAGAATACAAAATAAAGATACAATG : GGGGCACCA</gDNA_template>
            <first_frame> V  T  A  L  L  P  L  K  T  L  T  P  F  L  L  Y  S  I  S  S  S  I  P  K  N  L  D  R  R  R  R  N  G  S  C  D  Q  S  T  T  *  G  S  R  L  R  L  Q  I  S  H  S  S  P  Q  G  T  C  K  V  P  F  T  *  F  R  *  T  *  W  L  S  Q  R  C  C  Y  R  N  Y  S  *  S  R  *  G  C  T  I  G  K  D  D  I  P  S  S  F  P  L  Q  A  S  E  G  V  V  R  C  C  R  R  D  V  Y  W  S  V  Y  L  L  W  E  K  S  *  S  N  G  W  *  C  A  C  T  Q  I  Y  P  *  R  S  C  C  L  *  C  *  A  *  S  W  *  P  W  C  F  C  *  M  L  W  *  L  C  Y  C  Y  Q  S  *  P  *  *  R  N  N  *  :  D  *  A  S  I  W  I  Q  E  D  C  A  *  W  M  S  S  H  D  W  S  G  C  W  W  R  K  N  *  E  T  N  A  *  S  W  *  R  I  S  Q  I  P  C  *  E  E  L  L  A  *  G  S  W  C  C  Y  E  S  C  G  A  S  S  W  W  W  *  P  S  T  Y  W  S  C  Q  Y  C  A  S  *  C  T  T  W  A  K  G  W  S  Y  R  S  K  E  D  W  S  S  S  W  A  S  C  C  Y  C  C  Q  S  *  Q  G  L  R  Y  *  F  C  V  T  V  F  L  V  V  F  G  F  *  V  F  S  Y  C  H  L  Y  T  K  L  S  L  S  F  V  G  I  L  F  *  K  F  C  *  G  P  L  L  T  Q  L  C  H  L  *  M  C  L  A  W  L  I  L  F  S  F  S  S  L  F  K  *  N  I  M  T  A  Q  S  H  Y  V  S  L  Q  F  *  V  I  :  K  E  N  T  K  *  R  Y  N   : G  G  T  </first_frame>
            <second_frame>  L  R  P  S  S  L  *  K  P  *  L  P  F  F  F  I  P  F  L  P  L  F  P  K  T  *  T  E  G  A  E  M  G  R  V  I  R  A  Q  R  K  G  A  G  S  V  F  K  S  H  T  H  H  R  K  G  P  A  R  F  R  S  L  D  F  G  E  R  N  G  Y  L  K  G  V  V  T  E  I  I  H  D  P  G  R  G  A  P  L  A  R  M  T  F  R  H  P  F  R  Y  K  H  Q  K  E  L  F  V  A  A  E  G  M  Y  T  G  Q  F  I  Y  C  G  K  K  A  N  L  M  V  G  N  V  L  A  L  R  S  I  P  E  G  A  V  V  C  N  V  E  H  K  V  G  D  R  G  V  F  A  R  C  S  G  D  Y  A  I  V  I  S  H  N  P  D  N  G  T  T  R :   I  K  L  P  S  G  S  K  K  I  V  P  S  G  C  R  A  M  I  G  Q  V  A  G  G  G  R  T  E  K  P  M  L  K  A  G  N  A  Y  H  K  Y  R  V  K  R  N  C  W  P  K  V  R  G  V  A  M  N  P  V  E  H  P  H  G  G  G  N  H  Q  H  I  G  H  A  S  T  V  R  R  D  A  P  P  G  Q  K  V  G  L  I  A  A  R  R  T  G  R  L  R  G  Q  A  A  A  T  A  A  K  A  D  K  A  *  D  I  S  F  V  L  L  F  S  L  L  C  L  D  F  E  Y  S  A  T  V  I  F  I  L  S  *  V  *  V  L  L  G  Y  Y  F  R  S  F  V  K  D  P  C  L  H  N  F  A  I  Y  K  C  V  *  L  G  S  F  C  F  L  F  L  L  C  S  S  E  T  *  *  Q  L  N  L  I  M  F  P  F  N  F  K  L  * :   K  R  I  Q  N  K  D  T  M  :  G  A  P </second_frame>
            <third_frame>   Y  G  P  P  P  S  K  N  P  N  S  L  S  S  L  F  H  F  F  L  Y  S  Q  K  L  R  Q  K  A  P  K  W  V  V  *  S  E  H  N  V  R  E  Q  A  P  S  S  N  L  T  L  I  T  A  R  D  L  Q  G  S  V  H  L  I  S  V  N  V  M  V  I  S  K  V  L  L  Q  K  L  F  M  I  Q  V  G  V  H  H  W  Q  G  *  H  S  V  I  L  S  V  T  S  I  R  R  S  C  S  L  L  Q  K  G  C  I  L  V  S  L  F  T  V  G  K  K  L  I  *  W  L  V  M  C  L  H  S  D  L  S  L  K  E  L  L  F  V  M  L  S  I  K  L  V  T  V  V  F  L  L  D  A  L  V  I  M  L  L  L  S  V  I  T  L  I  T  E  Q  L   : G  L  S  F  H  L  D  P  R  R  L  C  L  V  D  V  E  P  *  L  V  R  L  L  V  E  E  E  L  R  N  Q  C  L  K  L  V  T  H  I  T  N  T  V  L  R  G  T  A  G  L  R  F  V  V  L  L  *  I  L  W  S  I  L  M  V  V  V  T  I  N  I  L  V  M  P  V  L  C  V  V  M  H  H  L  G  K  R  L  V  L  S  Q  Q  G  G  L  V  V  F  V  G  K  L  L  L  L  L  P  K  L  T  R  P  K  I  L  V  L  C  Y  C  F  P  C  C  V  W  I  L  S  I  Q  L  L  S  S  L  Y  *  V  K  F  K  F  C  W  D  I  I  L  E  V  L  L  R  T  L  A  Y  T  T  L  P  F  I  N  V  F  S  L  A  H  S  V  F  F  F  F  S  V  Q  V  K  H  N  D  S  S  I  S  L  C  F  P  S  I  L  S  Y   : K  R  E  Y  K  I  K  I  Q  W :   G  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46907" stop="46453"/>
                    <exon start="45729" stop="45387"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEGAEMGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARMTFRHPFRYKHQKELFVAAEGMYTGQFIYCGKKANLMVGNVLALRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45310" stop="45130"/>
                    <exon start="44664" stop="44637"/>
                    <exon start="43272" stop="43266"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKFKFCWDIILEVLLRTLAYTTLPFINVFSLAHSVFFFFSVQVKHNDSSISLCFPSILSYKREYKIKIQWGH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="52164" PGL_stop="48730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52164" e_stop="52142"/>
            <exon e_start="52032" e_stop="51881"/>
            <exon e_start="51791" e_stop="51709"/>
            <exon e_start="51521" e_stop="51395"/>
            <exon e_start="50776" e_stop="50685"/>
            <exon e_start="50374" e_stop="50288"/>
            <exon e_start="50194" e_stop="50070"/>
            <exon e_start="49971" e_stop="49911"/>
            <exon e_start="49807" e_stop="49754"/>
            <exon e_start="49674" e_stop="49597"/>
            <exon e_start="49507" e_stop="49426"/>
            <exon e_start="49232" e_stop="49093"/>
            <exon e_start="49005" e_stop="48730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.397" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="0.987"/>
          <exon-intron don_prob="0.979" acc_prob="0.995" e_score="0.988"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="0.984"/>
          <exon-intron don_prob="0.987" acc_prob="0.901" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.977"/>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.962" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.974"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.957"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52164" e_stop="52142" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.397" acc_prob="0.942">
            <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="52032" e_stop="51881" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="51791" e_stop="51709" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.995">
            <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="51521" e_stop="51395" e_length="127"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="50776" e_stop="50685" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.901">
            <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310"/>
          </intron>
          <exon e_serial="6" e_score="0.977">
            <gDNA_exon_boundary e_start="50374" e_stop="50288" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="50194" e_stop="50070" e_length="125"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98"/>
          </intron>
          <exon e_serial="8" e_score="0.984">
            <gDNA_exon_boundary e_start="49971" e_stop="49911" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="49807" e_stop="49754" e_length="54"/>
          </exon>
          <intron i_serial="9" don_prob="0.962" acc_prob="0.874">
            <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79"/>
          </intron>
          <exon e_serial="10" e_score="0.974">
            <gDNA_exon_boundary e_start="49674" e_stop="49597" e_length="78"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49596" i_stop="49508" i_length="89"/>
          </intron>
          <exon e_serial="11" e_score="0.988">
            <gDNA_exon_boundary e_start="49507" e_stop="49426" e_length="82"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="49425" i_stop="49233" i_length="193"/>
          </intron>
          <exon e_serial="12" e_score="0.957">
            <gDNA_exon_boundary e_start="49232" e_stop="49093" e_length="140"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49092" i_stop="49006" i_length="87"/>
          </intron>
          <exon e_serial="13" e_score="0.946">
            <gDNA_exon_boundary e_start="49005" e_stop="48730" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52164" stop="52142"/>
              <exon start="52032" stop="51881"/>
              <exon start="51791" stop="51709"/>
              <exon start="51521" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49426"/>
              <exon start="49232" stop="49093"/>
              <exon start="49005" stop="48730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313602" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACATATATATTTTTTAATAAA : GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAG : TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCC : GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG : ATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA : ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAAT : GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT : CAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA : GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG : TGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAG : ACACAATATACTTTAGGAGACGAGAAATATAAAGCCGTTGATGAGGGGTTAGGCCCAGAAAGTATGAATGCATCCCTACGAG : AAATAAGGTCTGTTTTCTTAAACGCAATACCCAAAAGAGACAACCCTAAACACAGAGGAGCTTTTATAGACGCAATGCATCATCATACTAGCCTTTTTCGCCGGTGGTCTCTTGAAGTGGCCCTTGAAATCGATAATGTG : TTGGCCCCAATAGCATTTGCTGATTGGTATTTTGATCGGAAATACTATTATTTGGTAGATGAAAAACATACCATGCCAATCAAAAATACGATCAAAAACACAACTTATTATTATCATGAATAGACTAATCTTCATTTATTCCAAGAAAAGTTATCAAAAATATTTGATTGTTAGACAATCAAATTCTCTATTGTATCATGTAAAAGATTTTCCCTATGTATCCAATCCGGTGACAAAGAGGTCCCTTTGACAAAATTAATAAAAATTTCTATTGTG</gDNA_template>
            <first_frame> Q  H  I  Y  F  L  I  K :   M  M  M  V  T  K  S  V  Q  L  V  V  L  L  V  C  C  L  T  I  I  T  I  Q  C  A  N  A  T  Q  N  P  N  L  F  N  V  E  P  T  I  V  H  S  A  A  S  K  G  A   : V  C  L  D  G  S  P  P  A  Y  Y  F  E  P  G  F  G  D  G  A  E  N  W  I  F  H  L  S  :  G  G  A  W  C  I  N  V  T  D  C  Q  K  R  A  E  G  S  N  G  S  S  K  R  M  G  P  L  Q  F  Q  G  I  H  S  K  N  N  T  Q  N  P   : D  F  Y  N  W  N  K  V  V  V  A  Y  C  D  G  G  S  F  I  G  D  S  E  Y  I  D  P  S  N  N  R  :  T  K  D  L  Q  F  R  G  Q  K  I  F  Y  T  V  L  E  E  V  L  E  K  G  L  K  N  A  K  N  :  A  I  L  A  G  S  S  A  G  G  Y  P  A  I  L  Y  C  D  Y  F  R  D  S  L  P  I  N  S  R  V  K  C  L  V  D  S  G  Y  F  V  H  F :   K  N  P  V  L  E  R  F  W  T  W  R  F  S  G  V  A  A  L  Q  :  G  A  A  K  T  L  P  K  S  C  T  S  K  M  K  A  E  L  :  C  L  Y  S  E  N  I  Q  Q  Y  T  K  T  P  F  F  L  H  M  S  A  F  D  N  I  E  :  T  Q  Y  T  L  G  D  E  K  Y  K  A  V  D  E  G  L  G  P  E  S  M  N  A  S  L  R   : E  I  R  S  V  F  L  N  A  I  P  K  R  D  N  P  K  H  R  G  A  F  I  D  A  M  H  H  H  T  S  L  F  R  R  W  S  L  E  V  A  L  E  I  D  N  V  :  L  A  P  I  A  F  A  D  W  Y  F  D  R  K  Y  Y  Y  L  V  D  E  K  H  T  M  P  I  K  N  T  I  K  N  T  T  Y  Y  Y  H  E  *  T  N  L  H  L  F  Q  E  K  L  S  K  I  F  D  C  *  T  I  K  F  S  I  V  S  C  K  R  F  S  L  C  I  Q  S  G  D  K  E  V  P  L  T  K  L  I  K  I  S  I  V </first_frame>
            <second_frame>  N  I  Y  I  F  *  *   : R  *  *  W  L  Q  N  L  F  N  L  L  S  Y  L  F  A  V  *  P  S  S  Q  F  N  V  Q  M  Q  H  K  T  Q  I  Y  L  M  S  N  Q  Q  *  F  I  V  L  R  Q  R  E  Q  :  C  A  W  M  D  H  L  Q  H  T  I  L  N  Q  D  L  E  M  E  L  K  I  G  F  F  I  Y  P :   E  E  H  G  V  *  M  S  Q  I  A  K  N  V  P  K  A  Q  M  V  H  Q  N  E  W  V  H  Y  N  F  K  E  F  T  V  R  I  I  P  K  I  Q  :  I  F  I  I  G  T  K  *  L  L  H  T  A  M  V  D  R  S  L  E  I  L  N  T  L  I  Q  V  I  I  E :   L  K  I  F  S  L  E  G  K  R  F  F  T  Q  Y  L  R  R  C  W  K  K  D  *  R  M  P  K  M :   Q  S  *  L  A  V  L  Q  E  D  I  Q  Q  Y  Y  I  V  I  I  S  V  I  H  C  Q  L  I  L  E  *  S  V  *  L  I  L  A  T  L  F  I   : S  R  I  L  C  S  K  D  F  G  H  G  D  F  Q  E  L  P  L  Y  K :   E  L  P  K  R  Y  Q  N  H  A  L  Q  K  *  K  Q  N  C :   A  S  T  Q  K  T  S  N  N  I  L  R  H  H  F  F  F  T  C  Q  H  L  I  T  S  R :   H  N  I  L  *  E  T  R  N  I  K  P  L  M  R  G  *  A  Q  K  V  *  M  H  P  Y  E  :  K  *  G  L  F  S  *  T  Q  Y  P  K  E  T  T  L  N  T  E  E  L  L  *  T  Q  C  I  I  I  L  A  F  F  A  G  G  L  L  K  W  P  L  K  S  I  M  C :   W  P  Q  *  H  L  L  I  G  I  L  I  G  N  T  I  I  W  *  M  K  N  I  P  C  Q  S  K  I  R  S  K  T  Q  L  I  I  I  M  N  R  L  I  F  I  Y  S  K  K  S  Y  Q  K  Y  L  I  V  R  Q  S  N  S  L  L  Y  H  V  K  D  F  P  Y  V  S  N  P  V  T  K  R  S  L  *  Q  N  *  *  K  F  L  L   </second_frame>
            <third_frame>   T  Y  I  F  F  N  K  :  D  D  D  G  Y  K  I  C  S  T  C  C  L  T  C  L  L  F  D  H  H  H  N  S  M  C  K  C  N  T  K  P  K  F  I  *  C  R  T  N  N  S  S  *  C  C  V  K  G  S  S :   V  L  G  W  I  T  S  S  I  L  F  *  T  R  I  W  R  W  S  *  K  L  D  F  S  S  I   : R  R  S  M  V  Y  K  C  H  R  L  P  K  T  C  R  R  L  K  W  F  I  K  T  N  G  S  T  T  I  S  R  N  S  Q  *  E  *  Y  P  K  S  R :   F  L  *  L  E  Q  S  S  C  C  I  L  R  W  W  I  V  H  W  R  F  *  I  H  *  S  K  *  *  *   : N  *  R  S  S  V  *  R  A  K  D  F  L  H  S  T  *  G  G  A  G  K  R  I  K  E  C  Q  K   : C  N  P  S  W  Q  F  C  R  R  I  S  S  N  I  I  L  *  L  F  P  *  F  I  A  N  *  F  *  S  E  V  F  S  *  F  W  L  L  C  S  F  :  Q  E  S  C  A  R  K  I  L  D  M  E  I  F  R  S  C  R  F  T   : R  S  C  Q  N  V  T  K  I  M  H  F  K  N  E  S  R  I   : V  P  L  L  R  K  H  P  T  I  Y  *  D  T  I  F  S  S  H  V  S  I  *  *  H  R   : D  T  I  Y  F  R  R  R  E  I  *  S  R  *  *  G  V  R  P  R  K  Y  E  C  I  P  T  R :   N  K  V  C  F  L  K  R  N  T  Q  K  R  Q  P  *  T  Q  R  S  F  Y  R  R  N  A  S  S  Y  *  P  F  S  P  V  V  S  *  S  G  P  *  N  R  *  C   : V  G  P  N  S  I  C  *  L  V  F  *  S  E  I  L  L  F  G  R  *  K  T  Y  H  A  N  Q  K  Y  D  Q  K  H  N  L  L  L  S  *  I  D  *  S  S  F  I  P  R  K  V  I  K  N  I  *  L  L  D  N  Q  I  L  Y  C  I  M  *  K  I  F  P  M  Y  P  I  R  *  Q  R  G  P  F  D  K  I  N  K  N  F  Y  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52164" stop="52142"/>
                    <exon start="52032" stop="51881"/>
                    <exon start="51791" stop="51709"/>
                    <exon start="51521" stop="51395"/>
                    <exon start="50776" stop="50685"/>
                    <exon start="50374" stop="50288"/>
                    <exon start="50194" stop="50070"/>
                    <exon start="49971" stop="49911"/>
                    <exon start="49807" stop="49754"/>
                    <exon start="49674" stop="49597"/>
                    <exon start="49507" stop="49426"/>
                    <exon start="49232" stop="49093"/>
                    <exon start="49005" stop="48883"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1224</number_coding_nucleotides>
                  <number_encoded_amino_acids>408</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHIYFLIKMMMVTKSVQLVVLLVCCLTIITIQCANATQNPNLFNVEPTIVHSAASKGAVCLDGSPPAYYFEPGFGDGAENWIFHLSGGAWCINVTDCQKRAEGSNGSSKRMGPLQFQGIHSKNNTQNPDFYNWNKVVVAYCDGGSFIGDSEYIDPSNNRTKDLQFRGQKIFYTVLEEVLEKGLKNAKNAILAGSSAGGYPAILYCDYFRDSLPINSRVKCLVDSGYFVHFKNPVLERFWTWRFSGVAALQGAAKTLPKSCTSKMKAELCLYSENIQQYTKTPFFLHMSAFDNIETQYTLGDEKYKAVDEGLGPESMNASLREIRSVFLNAIPKRDNPKHRGAFIDAMHHHTSLFRRWSLEVALEIDNVLAPIAFADWYFDRKYYYLVDEKHTMPIKNTIKNTTYYYHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="64525" PGL_stop="65471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64525" e_stop="64906"/>
            <exon e_start="65000" e_stop="65471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64525" e_stop="64906" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64907" i_stop="64999" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="65000" e_stop="65471" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64525" stop="64906"/>
              <exon start="65000" stop="65471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCCTCTGATAACAACTCTTGGCTAAAGCCATCCTATACTCTTTTTCTCTTTAGTCATTACATTATTAACAATGCCTGAGGCACCAAAGAATTCCCCTATTGTTGCTGAAGAAAACAAGAAAACTCTTCATTTCATTGAAGATGTTACCACCAAAGCTGATGAGATCCAAAAGAGAGTCCTTGCTGAAATACTTTGTCGAAATGCCAACGTTGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACTGATAGAGAGACTTTCAAAAAAGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGATATCAACCGCATTGCGAGTGGTGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTGAATTCTTGACAAG : TTCTGGTACGTCAGGAGGGGAGAGGAAATTGATGCCAACAACAGAGGAAGAGCTTGGAAGACGATCGTTGCTTTATAGTCTTCTGATGCCTGTGATGAGTCATTTTGTCCCAGATTTGGAGACGGGCAAAGGAATGTACTTTCTGTTTGTAAAATCTGAATCTAAGACCCCGGGAGGCCTATTAGCTCGTCCTGTTTTAACAAGTTATTACAATAGCCCTCATTTTAAAAACAGACGTCCTGACCCTTACACAAACTACACTAGCCCAAATGAAACTATTCTCTGCCCTGATTCATACCAGAGCATGTATTCCCAAATGCTCTGTGGACTCAGCCAAAATGCACAAGTCCTTCGTGTTGGCGCGGTTTTTGCCTCTGGCTTCATCCGCGCCATCCGCTTCTTAGAGAAGCACTGGTCCCTTCTTTGTACTGATATTCGATCCGGTATCATGAATACTGAATTGATTACTGAT</gDNA_template>
            <first_frame> S  L  *  *  Q  L  L  A  K  A  I  L  Y  S  F  S  L  *  S  L  H  Y  *  Q  C  L  R  H  Q  R  I  P  L  L  L  L  K  K  T  R  K  L  F  I  S  L  K  M  L  P  P  K  L  M  R  S  K  R  E  S  L  L  K  Y  F  V  E  M  P  T  L  S  T  *  S  A  M  L  I  L  M  A  I  L  I  E  R  L  S  K  K  L  C  L  L  S  V  M  K  I  F  S  M  I  S  T  A  L  R  V  V  I  H  L  L  S  C  A  P  N  L  S  L  N  S  *  Q   : V  L  V  R  Q  E  G  R  G  N  *  C  Q  Q  Q  R  K  S  L  E  D  D  R  C  F  I  V  F  *  C  L  *  *  V  I  L  S  Q  I  W  R  R  A  K  E  C  T  F  C  L  *  N  L  N  L  R  P  R  E  A  Y  *  L  V  L  F  *  Q  V  I  T  I  A  L  I  L  K  T  D  V  L  T  L  T  Q  T  T  L  A  Q  M  K  L  F  S  A  L  I  H  T  R  A  C  I  P  K  C  S  V  D  S  A  K  M  H  K  S  F  V  L  A  R  F  L  P  L  A  S  S  A  P  S  A  S  *  R  S  T  G  P  F  F  V  L  I  F  D  P  V  S  *  I  L  N  *  L  L   </first_frame>
            <second_frame>  P  S  D  N  N  S  W  L  K  P  S  Y  T  L  F  L  F  S  H  Y  I  I  N  N  A  *  G  T  K  E  F  P  Y  C  C  *  R  K  Q  E  N  S  S  F  H  *  R  C  Y  H  Q  S  *  *  D  P  K  E  S  P  C  *  N  T  L  S  K  C  Q  R  *  V  L  E  A  L  C  *  S  *  W  Q  Y  *  *  R  D  F  Q  K  S  Y  A  C  Y  Q  L  *  R  Y  S  A  *  Y  Q  P  H  C  E  W  *  Y  I  S  Y  L  V  L  P  T  C  L  *  I  L  D  K  :  F  W  Y  V  R  R  G  E  E  I  D  A  N  N  R  G  R  A  W  K  T  I  V  A  L  *  S  S  D  A  C  D  E  S  F  C  P  R  F  G  D  G  Q  R  N  V  L  S  V  C  K  I  *  I  *  D  P  G  R  P  I  S  S  S  C  F  N  K  L  L  Q  *  P  S  F  *  K  Q  T  S  *  P  L  H  K  L  H  *  P  K  *  N  Y  S  L  P  *  F  I  P  E  H  V  F  P  N  A  L  W  T  Q  P  K  C  T  S  P  S  C  W  R  G  F  C  L  W  L  H  P  R  H  P  L  L  R  E  A  L  V  P  S  L  Y  *  Y  S  I  R  Y  H  E  Y  *  I  D  Y  *  </second_frame>
            <third_frame>   P  L  I  T  T  L  G  *  S  H  P  I  L  F  F  S  L  V  I  T  L  L  T  M  P  E  A  P  K  N  S  P  I  V  A  E  E  N  K  K  T  L  H  F  I  E  D  V  T  T  K  A  D  E  I  Q  K  R  V  L  A  E  I  L  C  R  N  A  N  V  E  Y  L  K  R  Y  A  D  L  N  G  N  T  D  R  E  T  F  K  K  V  M  P  V  I  S  Y  E  D  I  Q  H  D  I  N  R  I  A  S  G  D  T  S  P  I  L  C  S  Q  P  V  S  E  F  L  T  S :   S  G  T  S  G  G  E  R  K  L  M  P  T  T  E  E  E  L  G  R  R  S  L  L  Y  S  L  L  M  P  V  M  S  H  F  V  P  D  L  E  T  G  K  G  M  Y  F  L  F  V  K  S  E  S  K  T  P  G  G  L  L  A  R  P  V  L  T  S  Y  Y  N  S  P  H  F  K  N  R  R  P  D  P  Y  T  N  Y  T  S  P  N  E  T  I  L  C  P  D  S  Y  Q  S  M  Y  S  Q  M  L  C  G  L  S  Q  N  A  Q  V  L  R  V  G  A  V  F  A  S  G  F  I  R  A  I  R  F  L  E  K  H  W  S  L  L  C  T  D  I  R  S  G  I  M  N  T  E  L  I  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64551" stop="64906"/>
                    <exon start="65000" stop="65471"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHPILFFSLVITLLTMPEAPKNSPIVAEENKKTLHFIEDVTTKADEIQKRVLAEILCRNANVEYLKRYADLNGNTDRETFKKVMPVISYEDIQHDINRIASGDTSPILCSQPVSEFLTSSGTSGGERKLMPTTEEELGRRSLLYSLLMPVMSHFVPDLETGKGMYFLFVKSESKTPGGLLARPVLTSYYNSPHFKNRRPDPYTNYTSPNETILCPDSYQSMYSQMLCGLSQNAQVLRVGAVFASGFIRAIRFLEKHWSLLCTDIRSGIMNTELITD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="71487" PGL_stop="68988"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71487" e_stop="71249"/>
            <exon e_start="71169" e_stop="71025"/>
            <exon e_start="70887" e_stop="70375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71487" e_stop="71249" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.989">
            <gDNA_intron_boundary i_start="71248" i_stop="71170" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71169" e_stop="71025" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="71024" i_stop="70888" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70887" e_stop="70375" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71487" stop="71249"/>
              <exon start="71169" stop="71025"/>
              <exon start="70887" stop="70375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323475" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGGAGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAG : TTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAG : GAAGGGCAACCCGAAAACAAAAACAACCCCCTCTCAAAATCTCCGCGCTCCTCGGAATCGATCCAGTTGCTAAAGGCTCCTCTTGTTTCTGCTCTTCCAACATTCTCCAATATATTCCTTACAGTTTCAATCATTCAGTCCCTGTAGCTGTAATTGGTACCGGCTTGTCTAATAGACGAGCCTATGGTGTGTGTCCACCCGATGCACCAAACGGGGTGAATCATGCTGAGTTTTTCAACGAGAGTAAACCCCCTTGTTACTATTTTTTGGCCAAGAATTATGGGCATACTGATATGCTGGATGAAGGGGAAAAAATAATGGGAATTATGAAGAAAAAAGGGAAAAAGGAAACAAAGCACGATCTAAGAAGGACTATAGGAGGACTTTTTGTGGCTTTTTTCAAGGCTTATTTGGAAGGTCAAGCGGATGATTTAATTAATATTATTGAATCGCCTGGGATTCGTTGTCCTATTAAACTTGATCCTGTTATATCTATCGAAGAGTAAGATCATC</gDNA_template>
            <first_frame> *  W  R  R  *  G  M  M  V  *  P  *  I  S  K  *  E  M  K  L  L  R  S  S  T  L  R  A  L  P  C  H  V  H  Y  *  Y  F  H  L  L  L  K  V  P  I  P  F  Y  Y  F  S  M  D  S  A  S  N  P  T  L  T  S  P  S  S  Y  I  F  L  P  I  N  I  S  P  L  L  L  S :   S  L  *  *  H  L  D  A  K  *  K  Q  Q  K  K  *  Q  S  G  Y  Q  L  R  S  S  T  L  C  C  Q  R  K  F  F  Q  T  S  R  K  S  R  C  Q  A  T  A  E  E  :  E  G  Q  P  E  N  K  N  N  P  L  S  K  S  P  R  S  S  E  S  I  Q  L  L  K  A  P  L  V  S  A  L  P  T  F  S  N  I  F  L  T  V  S  I  I  Q  S  L  *  L  *  L  V  P  A  C  L  I  D  E  P  M  V  C  V  H  P  M  H  Q  T  G  *  I  M  L  S  F  S  T  R  V  N  P  L  V  T  I  F  W  P  R  I  M  G  I  L  I  C  W  M  K  G  K  K  *  W  E  L  *  R  K  K  G  K  R  K  Q  S  T  I  *  E  G  L  *  E  D  F  L  W  L  F  S  R  L  I  W  K  V  K  R  M  I  *  L  I  L  L  N  R  L  G  F  V  V  L  L  N  L  I  L  L  Y  L  S  K  S  K  I  I </first_frame>
            <second_frame>  D  G  E  G  K  G  *  W  Y  S  L  R  F  R  S  R  R  *  S  C  *  D  H  Q  R  *  E  L  F  L  A  M  S  I  I  S  I  F  T  Y  Y  *  R  F  L  S  H  S  T  I  F  P  W  I  P  P  P  T  R  L  L  Q  V  P  P  P  T  Y  F  F  P  S  I  Y  R  R  C  S  *   : V  L  S  N  D  I  S  M  R  S  K  N  S  K  K  S  S  R  V  V  I  S  *  E  A  Q  L  C  A  A  R  E  S  F  S  R  H  P  E  S  R  G  V  R  P  Q  Q  R  R :   K  G  N  P  K  T  K  T  T  P  S  Q  N  L  R  A  P  R  N  R  S  S  C  *  R  L  L  L  F  L  L  F  Q  H  S  P  I  Y  S  L  Q  F  Q  S  F  S  P  C  S  C  N  W  Y  R  L  V  *  *  T  S  L  W  C  V  S  T  R  C  T  K  R  G  E  S  C  *  V  F  Q  R  E  *  T  P  L  L  L  F  F  G  Q  E  L  W  A  Y  *  Y  A  G  *  R  G  K  N  N  G  N  Y  E  E  K  R  E  K  G  N  K  A  R  S  K  K  D  Y  R  R  T  F  C  G  F  F  Q  G  L  F  G  R  S  S  G  *  F  N  *  Y  Y  *  I  A  W  D  S  L  S  Y  *  T  *  S  C  Y  I  Y  R  R  V  R  S   </second_frame>
            <third_frame>   M  E  K  V  R  D  D  G  I  A  L  D  F  E  V  G  D  E  V  V  K  I  I  N  V  K  S  S  S  L  P  C  P  L  L  V  F  S  P  T  T  E  G  S  Y  P  I  L  L  F  F  H  G  F  R  L  Q  P  D  S  Y  K  S  L  L  L  H  I  S  S  H  Q  Y  I  A  V  A  P  K  :  F  S  L  M  T  S  R  C  E  V  K  T  A  K  K  V  A  E  W  L  S  A  K  K  L  N  S  V  L  P  E  K  V  F  P  D  I  Q  K  V  A  V  S  G  H  S  R  G   : G  R  A  T  R  K  Q  K  Q  P  P  L  K  I  S  A  L  L  G  I  D  P  V  A  K  G  S  S  C  F  C  S  S  N  I  L  Q  Y  I  P  Y  S  F  N  H  S  V  P  V  A  V  I  G  T  G  L  S  N  R  R  A  Y  G  V  C  P  P  D  A  P  N  G  V  N  H  A  E  F  F  N  E  S  K  P  P  C  Y  Y  F  L  A  K  N  Y  G  H  T  D  M  L  D  E  G  E  K  I  M  G  I  M  K  K  K  G  K  K  E  T  K  H  D  L  R  R  T  I  G  G  L  F  V  A  F  F  K  A  Y  L  E  G  Q  A  D  D  L  I  N  I  I  E  S  P  G  I  R  C  P  I  K  L  D  P  V  I  S  I  E  E  *  D  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71485" stop="71249"/>
                    <exon start="71169" stop="71025"/>
                    <exon start="70887" stop="70382"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEKVRDDGIALDFEVGDEVVKIINVKSSSLPCPLLVFSPTTEGSYPILLFFHGFRLQPDSYKSLLLHISSHQYIAVAPKFSLMTSRCEVKTAKKVAEWLSAKKLNSVLPEKVFPDIQKVAVSGHSRGGRATRKQKQPPLKISALLGIDPVAKGSSCFCSSNILQYIPYSFNHSVPVAVIGTGLSNRRAYGVCPPDAPNGVNHAEFFNESKPPCYYFLAKNYGHTDMLDEGEKIMGIMKKKGKKETKHDLRRTIGGLFVAFFKAYLEGQADDLINIIESPGIRCPIKLDPVISIEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71486" e_stop="71249"/>
            <exon e_start="71169" e_stop="70953"/>
            <exon e_start="69180" e_stop="68988"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71486" e_stop="71249" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.989">
            <gDNA_intron_boundary i_start="71248" i_stop="71170" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71169" e_stop="70953" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="70952" i_stop="69181" i_length="1772"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="69180" e_stop="68988" e_length="193"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71486" stop="71249"/>
              <exon start="71169" stop="70953"/>
              <exon start="69180" stop="68988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGGAGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAG : TTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAGGTAAAACAGCATTCGCCTTAGCTTTAGCCTATGGATCAGGAGATAGCAAGGGCGAATCCATCGTCACTTCAG : GTACACTATTTCACATTCGAGTAGCCAAAGATGCATCTGTGGCGGATTTGAAAAAAGAAATAAGTAATCAAGAAAATCTTCCAGAGAATCATTTGATTCTCATGTTGGATACGGGACATGGAGATTCTATCATGTTGAATGACGACGAAATTTCCCTTGTGGATTATGGGGTAACAGATGGATCACATTTTTA</gDNA_template>
            <first_frame> D  G  E  G  K  G  *  W  Y  S  L  R  F  R  S  R  R  *  S  C  *  D  H  Q  R  *  E  L  F  L  A  M  S  I  I  S  I  F  T  Y  Y  *  R  F  L  S  H  S  T  I  F  P  W  I  P  P  P  T  R  L  L  Q  V  P  P  P  T  Y  F  F  P  S  I  Y  R  R  C  S  *   : V  L  S  N  D  I  S  M  R  S  K  N  S  K  K  S  S  R  V  V  I  S  *  E  A  Q  L  C  A  A  R  E  S  F  S  R  H  P  E  S  R  G  V  R  P  Q  Q  R  R  *  N  S  I  R  L  S  F  S  L  W  I  R  R  *  Q  G  R  I  H  R  H  F  R :   Y  T  I  S  H  S  S  S  Q  R  C  I  C  G  G  F  E  K  R  N  K  *  S  R  K  S  S  R  E  S  F  D  S  H  V  G  Y  G  T  W  R  F  Y  H  V  E  *  R  R  N  F  P  C  G  L  W  G  N  R  W  I  T  F  L </first_frame>
            <second_frame>  M  E  K  V  R  D  D  G  I  A  L  D  F  E  V  G  D  E  V  V  K  I  I  N  V  K  S  S  S  L  P  C  P  L  L  V  F  S  P  T  T  E  G  S  Y  P  I  L  L  F  F  H  G  F  R  L  Q  P  D  S  Y  K  S  L  L  L  H  I  S  S  H  Q  Y  I  A  V  A  P  K  :  F  S  L  M  T  S  R  C  E  V  K  T  A  K  K  V  A  E  W  L  S  A  K  K  L  N  S  V  L  P  E  K  V  F  P  D  I  Q  K  V  A  V  S  G  H  S  R  G  G  K  T  A  F  A  L  A  L  A  Y  G  S  G  D  S  K  G  E  S  I  V  T  S   : G  T  L  F  H  I  R  V  A  K  D  A  S  V  A  D  L  K  K  E  I  S  N  Q  E  N  L  P  E  N  H  L  I  L  M  L  D  T  G  H  G  D  S  I  M  L  N  D  D  E  I  S  L  V  D  Y  G  V  T  D  G  S  H  F   </second_frame>
            <third_frame>   W  R  R  *  G  M  M  V  *  P  *  I  S  K  *  E  M  K  L  L  R  S  S  T  L  R  A  L  P  C  H  V  H  Y  *  Y  F  H  L  L  L  K  V  P  I  P  F  Y  Y  F  S  M  D  S  A  S  N  P  T  L  T  S  P  S  S  Y  I  F  L  P  I  N  I  S  P  L  L  L  S :   S  L  *  *  H  L  D  A  K  *  K  Q  Q  K  K  *  Q  S  G  Y  Q  L  R  S  S  T  L  C  C  Q  R  K  F  F  Q  T  S  R  K  S  R  C  Q  A  T  A  E  E  V  K  Q  H  S  P  *  L  *  P  M  D  Q  E  I  A  R  A  N  P  S  S  L  Q  :  V  H  Y  F  T  F  E  *  P  K  M  H  L  W  R  I  *  K  K  K  *  V  I  K  K  I  F  Q  R  I  I  *  F  S  C  W  I  R  D  M  E  I  L  S  C  *  M  T  T  K  F  P  L  W  I  M  G  *  Q  M  D  H  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71485" stop="71249"/>
                    <exon start="71169" stop="70953"/>
                    <exon start="69180" stop="68990"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEKVRDDGIALDFEVGDEVVKIINVKSSSLPCPLLVFSPTTEGSYPILLFFHGFRLQPDSYKSLLLHISSHQYIAVAPKFSLMTSRCEVKTAKKVAEWLSAKKLNSVLPEKVFPDIQKVAVSGHSRGGKTAFALALAYGSGDSKGESIVTSGTLFHIRVAKDASVADLKKEISNQENLPENHLILMLDTGHGDSIMLNDDEISLVDYGVTDGSHF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="77310" PGL_stop="78827"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77310" e_stop="77480"/>
            <exon e_start="77707" e_stop="77944"/>
            <exon e_start="78019" e_stop="78169"/>
            <exon e_start="78250" e_stop="78827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.779" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77310" e_stop="77480" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.971">
            <gDNA_intron_boundary i_start="77481" i_stop="77706" i_length="226"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77707" e_stop="77944" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.821" acc_prob="0.987">
            <gDNA_intron_boundary i_start="77945" i_stop="78018" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78019" e_stop="78169" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.779">
            <gDNA_intron_boundary i_start="78170" i_stop="78249" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78250" e_stop="78827" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77310" stop="77480"/>
              <exon start="77707" stop="77944"/>
              <exon start="78019" stop="78169"/>
              <exon start="78250" stop="78827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCCAGGACTTCCACACAAGGACAAGATGAGTTCATGAATGAAGTGATGTATATTGTGAAACTTCAGCATAGAAATCTTGTGAAGATTCTCGGATGTTGCATCGAAGGAGAAGAAAGAATGTTGATCTATGAGTACATGCCAAGTGGAAGTCTTGATTCATTTATATTTG : ATGACACACGAAGCACGGTATTAGACTGGTCTAAGCGCTTTCACATAATCAACGGGATAGCTCGGGGACTTGTGTATCTGCATCAAGATTCTCAGTTGAGGATCATTCACAGGGACCTGAAAGCTAACAACATTTTACTAGACAATGACATGAATCCAAAGATATCAGACTTCGGTATAGCAAGAAGTTGTGAAGATGACAAGTTTGGAGCCAAGACACACCGAGTAGTTGGAACATA : TGGCTACCTCTCACCGGAATATGCTGTACATGGTGTCTACTCGGTGAAGTCAGATGTATTTAGCTTTGGTGTCTTAGTTCTTGAAATTGTAAGTGGGAAAGGGAACAGAAAATTCTCTCATCCGGATCATAACCTTAACCTCCTTGGACAT : GCATGGACACTCTATAAAGAAGGTAGATCAATGGAATTACTCGGGGATTTCCCCATTGGTGTTTGTTCTACACCTGAAGTTATACGATCAATCCATGTTGGTCTATTGTGTGTGCAACATCGTCCAGAAGATCGTCCAAGTATGTCTTCAGTGGTTATGATGTTAAACAATGAAGGTGTACTGCCACCTGCTAAACAACCAGCTTTCTTCGTAGAAACAAACACACCAGATAGTGAATTCTCTTCTAGTCAACATGCACATAGTACAGTGAATGAGATCACCATCACAACATTAGATCCCAGATAGTAAATTCTTCATTGCAAATAGAAATCCTTCATTCTTTTCTTCTTTGTAGCAATGTAGGGCGAAAGTTCCCACTCCAGCTACTCAAGAAGAGTGCAGTCATCTTCTTGTAACATGGTGCAACACTGCTAACATGTGTTAAAACATTTTCTTTCAACTATTTCACTACAACTTGTTACTTTGTACAAAGGTGAATAGGAAATATTATGTCCTATCCCAAATAGTTTGAGTTTAACGCAGAATTGCCCGATTGATGGACCAATTTTGCTTTCACT</gDNA_template>
            <first_frame> C  P  G  L  P  H  K  D  K  M  S  S  *  M  K  *  C  I  L  *  N  F  S  I  E  I  L  *  R  F  S  D  V  A  S  K  E  K  K  E  C  *  S  M  S  T  C  Q  V  E  V  L  I  H  L  Y  L  :  M  T  H  E  A  R  Y  *  T  G  L  S  A  F  T  *  S  T  G  *  L  G  D  L  C  I  C  I  K  I  L  S  *  G  S  F  T  G  T  *  K  L  T  T  F  Y  *  T  M  T  *  I  Q  R  Y  Q  T  S  V  *  Q  E  V  V  K  M  T  S  L  E  P  R  H  T  E  *  L  E  H   : M  A  T  S  H  R  N  M  L  Y  M  V  S  T  R  *  S  Q  M  Y  L  A  L  V  S  *  F  L  K  L  *  V  G  K  G  T  E  N  S  L  I  R  I  I  T  L  T  S  L  D  M :   H  G  H  S  I  K  K  V  D  Q  W  N  Y  S  G  I  S  P  L  V  F  V  L  H  L  K  L  Y  D  Q  S  M  L  V  Y  C  V  C  N  I  V  Q  K  I  V  Q  V  C  L  Q  W  L  *  C  *  T  M  K  V  Y  C  H  L  L  N  N  Q  L  S  S  *  K  Q  T  H  Q  I  V  N  S  L  L  V  N  M  H  I  V  Q  *  M  R  S  P  S  Q  H  *  I  P  D  S  K  F  F  I  A  N  R  N  P  S  F  F  S  S  L  *  Q  C  R  A  K  V  P  T  P  A  T  Q  E  E  C  S  H  L  L  V  T  W  C  N  T  A  N  M  C  *  N  I  F  F  Q  L  F  H  Y  N  L  L  L  C  T  K  V  N  R  K  Y  Y  V  L  S  Q  I  V  *  V  *  R  R  I  A  R  L  M  D  Q  F  C  F  H  </first_frame>
            <second_frame>  V  Q  D  F  H  T  R  T  R  *  V  H  E  *  S  D  V  Y  C  E  T  S  A  *  K  S  C  E  D  S  R  M  L  H  R  R  R  R  K  N  V  D  L  *  V  H  A  K  W  K  S  *  F  I  Y  I  * :   *  H  T  K  H  G  I  R  L  V  *  A  L  S  H  N  Q  R  D  S  S  G  T  C  V  S  A  S  R  F  S  V  E  D  H  S  Q  G  P  E  S  *  Q  H  F  T  R  Q  *  H  E  S  K  D  I  R  L  R  Y  S  K  K  L  *  R  *  Q  V  W  S  Q  D  T  P  S  S  W  N  I  :  W  L  P  L  T  G  I  C  C  T  W  C  L  L  G  E  V  R  C  I  *  L  W  C  L  S  S  *  N  C  K  W  E  R  E  Q  K  I  L  S  S  G  S  *  P  *  P  P  W  T   : C  M  D  T  L  *  R  R  *  I  N  G  I  T  R  G  F  P  H  W  C  L  F  Y  T  *  S  Y  T  I  N  P  C  W  S  I  V  C  A  T  S  S  R  R  S  S  K  Y  V  F  S  G  Y  D  V  K  Q  *  R  C  T  A  T  C  *  T  T  S  F  L  R  R  N  K  H  T  R  *  *  I  L  F  *  S  T  C  T  *  Y  S  E  *  D  H  H  H  N  I  R  S  Q  I  V  N  S  S  L  Q  I  E  I  L  H  S  F  L  L  C  S  N  V  G  R  K  F  P  L  Q  L  L  K  K  S  A  V  I  F  L  *  H  G  A  T  L  L  T  C  V  K  T  F  S  F  N  Y  F  T  T  T  C  Y  F  V  Q  R  *  I  G  N  I  M  S  Y  P  K  *  F  E  F  N  A  E  L  P  D  *  W  T  N  F  A  F  T </second_frame>
            <third_frame>   S  R  T  S  T  Q  G  Q  D  E  F  M  N  E  V  M  Y  I  V  K  L  Q  H  R  N  L  V  K  I  L  G  C  C  I  E  G  E  E  R  M  L  I  Y  E  Y  M  P  S  G  S  L  D  S  F  I  F   : D  D  T  R  S  T  V  L  D  W  S  K  R  F  H  I  I  N  G  I  A  R  G  L  V  Y  L  H  Q  D  S  Q  L  R  I  I  H  R  D  L  K  A  N  N  I  L  L  D  N  D  M  N  P  K  I  S  D  F  G  I  A  R  S  C  E  D  D  K  F  G  A  K  T  H  R  V  V  G  T  Y :   G  Y  L  S  P  E  Y  A  V  H  G  V  Y  S  V  K  S  D  V  F  S  F  G  V  L  V  L  E  I  V  S  G  K  G  N  R  K  F  S  H  P  D  H  N  L  N  L  L  G  H  :  A  W  T  L  Y  K  E  G  R  S  M  E  L  L  G  D  F  P  I  G  V  C  S  T  P  E  V  I  R  S  I  H  V  G  L  L  C  V  Q  H  R  P  E  D  R  P  S  M  S  S  V  V  M  M  L  N  N  E  G  V  L  P  P  A  K  Q  P  A  F  F  V  E  T  N  T  P  D  S  E  F  S  S  S  Q  H  A  H  S  T  V  N  E  I  T  I  T  T  L  D  P  R  *  *  I  L  H  C  K  *  K  S  F  I  L  F  F  F  V  A  M  *  G  E  S  S  H  S  S  Y  S  R  R  V  Q  S  S  S  C  N  M  V  Q  H  C  *  H  V  L  K  H  F  L  S  T  I  S  L  Q  L  V  T  L  Y  K  G  E  *  E  I  L  C  P  I  P  N  S  L  S  L  T  Q  N  C  P  I  D  G  P  I  L  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77312" stop="77480"/>
                    <exon start="77707" stop="77944"/>
                    <exon start="78019" stop="78169"/>
                    <exon start="78250" stop="78555"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRTSTQGQDEFMNEVMYIVKLQHRNLVKILGCCIEGEERMLIYEYMPSGSLDSFIFDDTRSTVLDWSKRFHIINGIARGLVYLHQDSQLRIIHRDLKANNILLDNDMNPKISDFGIARSCEDDKFGAKTHRVVGTYGYLSPEYAVHGVYSVKSDVFSFGVLVLEIVSGKGNRKFSHPDHNLNLLGHAWTLYKEGRSMELLGDFPIGVCSTPEVIRSIHVGLLCVQHRPEDRPSMSSVVMMLNNEGVLPPAKQPAFFVETNTPDSEFSSSQHAHSTVNEITITTLDPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="78993" PGL_stop="79392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78993" e_stop="79392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="78993" e_stop="79392" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78993" stop="79392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATAACAGTTTATTTTATAGTCAAGCATCCTCAAGAAGCAACAGTACACAGAAAACATAATAAGAGAAGTACCAAAACAAAAAAAATCTTGCAGACAAGGCTTGTGAACTGCTTATACACAACCTCAACGCCTCAAGTAAAGAACTAGAAATCTAAAAACAGAATACAGAACAAGATATTCAACTTAGAAACTCTCATTATAATTTTTCTCCTATATATGCTTTCGATAAAACTCATCTACATCCGAAACTGGGAAAGACACTAACATGTAGTTGTTGACGAAGTCTTCAATTACTCAAACAATAATTACCTATAGAGTTAATTTAGCAAATGCCACTGTCTCAGGCAGAACAAATGATGCACACAACATCCATTTTCCTGGTGCAACAAGGCGAACT</gDNA_template>
            <first_frame> L  I  T  V  Y  F  I  V  K  H  P  Q  E  A  T  V  H  R  K  H  N  K  R  S  T  K  T  K  K  I  L  Q  T  R  L  V  N  C  L  Y  T  T  S  T  P  Q  V  K  N  *  K  S  K  N  R  I  Q  N  K  I  F  N  L  E  T  L  I  I  I  F  L  L  Y  M  L  S  I  K  L  I  Y  I  R  N  W  E  R  H  *  H  V  V  V  D  E  V  F  N  Y  S  N  N  N  Y  L  *  S  *  F  S  K  C  H  C  L  R  Q  N  K  *  C  T  Q  H  P  F  S  W  C  N  K  A  N  </first_frame>
            <second_frame>  L  *  Q  F  I  L  *  S  S  I  L  K  K  Q  Q  Y  T  E  N  I  I  R  E  V  P  K  Q  K  K  S  C  R  Q  G  L  *  T  A  Y  T  Q  P  Q  R  L  K  *  R  T  R  N  L  K  T  E  Y  R  T  R  Y  S  T  *  K  L  S  L  *  F  F  S  Y  I  C  F  R  *  N  S  S  T  S  E  T  G  K  D  T  N  M  *  L  L  T  K  S  S  I  T  Q  T  I  I  T  Y  R  V  N  L  A  N  A  T  V  S  G  R  T  N  D  A  H  N  I  H  F  P  G  A  T  R  R  T </second_frame>
            <third_frame>   Y  N  S  L  F  Y  S  Q  A  S  S  R  S  N  S  T  Q  K  T  *  *  E  K  Y  Q  N  K  K  N  L  A  D  K  A  C  E  L  L  I  H  N  L  N  A  S  S  K  E  L  E  I  *  K  Q  N  T  E  Q  D  I  Q  L  R  N  S  H  Y  N  F  S  P  I  Y  A  F  D  K  T  H  L  H  P  K  L  G  K  T  L  T  C  S  C  *  R  S  L  Q  L  L  K  Q  *  L  P  I  E  L  I  *  Q  M  P  L  S  Q  A  E  Q  M  M  H  T  T  S  I  F  L  V  Q  Q  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0221M09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="83643" PGL_stop="83050"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83643" e_stop="83050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="83643" e_stop="83050" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83643" stop="83050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331616" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAATTTGCAACAGAAAGGGCTAAAATGGCTCTGTATCCATTGCCCACCGCCATTATACTCAACAGAATCACCCCTTTTACTTCCCGCTTCTTCCCCAAACCTCTATCTTCTTCCCTTTCCGCCTCCGTCGCCGCCATTACCTCGACCTTACCACAACACCTTTCCTATGGACCTTCCCTCCACAAAGGCCACAAAACTTCACACCGAAACTCCGATGAAGAAAGCTTCACTAGAGTCTTCGATATCACTGCTTTACGAGTCCCTGCAGAACAATGTTTCTCACTCGAGAGCAGATTACGCGGACACCTTTTAAATTGGCCGCGCATTCGTAACATTGCTAGGGTTGCCGGTGATGATATTGATGACGACTTGAAGGAGTTTATTGGAAATGATAATACTACTGATGATGAAACACAAACAGTATTGGAACGGAGAATCTATGGGAAAGGTGAAGGTGATGGGGAGAAAATGTGTTCGGTATTGTATAGAGATAAGCTTGCAAAGACTTTCAATTCGATAGGATATGTAAAGTTTGAGAATTTGGCTAAAATATCGCGGCCGAAGAAGAAAAAATGGAAGAGAGAGGAAAAAGA</gDNA_template>
            <first_frame> L  I  C  N  R  K  G  *  N  G  S  V  S  I  A  H  R  H  Y  T  Q  Q  N  H  P  F  Y  F  P  L  L  P  Q  T  S  I  F  F  P  F  R  L  R  R  R  H  Y  L  D  L  T  T  T  P  F  L  W  T  F  P  P  Q  R  P  Q  N  F  T  P  K  L  R  *  R  K  L  H  *  S  L  R  Y  H  C  F  T  S  P  C  R  T  M  F  L  T  R  E  Q  I  T  R  T  P  F  K  L  A  A  H  S  *  H  C  *  G  C  R  *  *  Y  *  *  R  L  E  G  V  Y  W  K  *  *  Y  Y  *  *  *  N  T  N  S  I  G  T  E  N  L  W  E  R  *  R  *  W  G  E  N  V  F  G  I  V  *  R  *  A  C  K  D  F  Q  F  D  R  I  C  K  V  *  E  F  G  *  N  I  A  A  E  E  E  K  M  E  E  R  G  K  R </first_frame>
            <second_frame>  *  F  A  T  E  R  A  K  M  A  L  Y  P  L  P  T  A  I  I  L  N  R  I  T  P  F  T  S  R  F  F  P  K  P  L  S  S  S  L  S  A  S  V  A  A  I  T  S  T  L  P  Q  H  L  S  Y  G  P  S  L  H  K  G  H  K  T  S  H  R  N  S  D  E  E  S  F  T  R  V  F  D  I  T  A  L  R  V  P  A  E  Q  C  F  S  L  E  S  R  L  R  G  H  L  L  N  W  P  R  I  R  N  I  A  R  V  A  G  D  D  I  D  D  D  L  K  E  F  I  G  N  D  N  T  T  D  D  E  T  Q  T  V  L  E  R  R  I  Y  G  K  G  E  G  D  G  E  K  M  C  S  V  L  Y  R  D  K  L  A  K  T  F  N  S  I  G  Y  V  K  F  E  N  L  A  K  I  S  R  P  K  K  K  K  W  K  R  E  E  K   </second_frame>
            <third_frame>   N  L  Q  Q  K  G  L  K  W  L  C  I  H  C  P  P  P  L  Y  S  T  E  S  P  L  L  L  P  A  S  S  P  N  L  Y  L  L  P  F  P  P  P  S  P  P  L  P  R  P  Y  H  N  T  F  P  M  D  L  P  S  T  K  A  T  K  L  H  T  E  T  P  M  K  K  A  S  L  E  S  S  I  S  L  L  Y  E  S  L  Q  N  N  V  S  H  S  R  A  D  Y  A  D  T  F  *  I  G  R  A  F  V  T  L  L  G  L  P  V  M  I  L  M  T  T  *  R  S  L  L  E  M  I  I  L  L  M  M  K  H  K  Q  Y  W  N  G  E  S  M  G  K  V  K  V  M  G  R  K  C  V  R  Y  C  I  E  I  S  L  Q  R  L  S  I  R  *  D  M  *  S  L  R  I  W  L  K  Y  R  G  R  R  R  K  N  G  R  E  R  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83639" stop="83052"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FATERAKMALYPLPTAIILNRITPFTSRFFPKPLSSSLSASVAAITSTLPQHLSYGPSLHKGHKTSHRNSDEESFTRVFDITALRVPAEQCFSLESRLRGHLLNWPRIRNIARVAGDDIDDDLKEFIGNDNTTDDETQTVLERRIYGKGEGDGEKMCSVLYRDKLAKTFNSIGYVKFENLAKISRPKKKKWKREEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="87466" PGL_stop="88357"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87466" e_stop="87719"/>
            <exon e_start="87894" e_stop="88357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.996"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="87466" e_stop="87719" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="87894" e_stop="88357" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87466" stop="87719"/>
              <exon start="87894" stop="88357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339151" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCGTTTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG : GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTCGCA</gDNA_template>
            <first_frame> S  P  F  L  S  I  Q  H  K  S  Y  S  Y  F  L  C  V  I  Q  R  F  R  W  Q  E  E  A  R  L  L  V  P  V  Q  Q  R  R  L  N  L  G  V  A  K  P  V  F  N  F  R  S  V  V  L  L  V  F  *  K  P  A  S  M  P  S  V  L  V  L  E  L  P  C  T  L  Q  L  F  S  N  T  L  L  L  R :   C  L  N  *  L  E  M  Q  L  G  I  T  R  R  L  G  *  S  Q  G  I  F  S  W  L  *  G  T  M  K  S  *  A  S  C  L  V  M  *  P  L  L  M  V  V  L  C  P  T  S  I  T  F  C  F  L  R  K  L  A  H  Q  S  P  L  Q  M  K  I  R  W  K  D  K  R  R  F  L  G  L  R  V  K  V  G  F  L  V  I  G  V  S  G  S  *  I  P  *  I  L  G  E  I  N  Y  V  F  L  L  V  *  S  K  L  L  G  F  M  V  V  C  I  Y  K  *  R  D  E  W  K  T  M  F  L  N  C  L  S  L  F  P  F  L  M  K  Y  Q  L  N  E  F  Y  L  R  </first_frame>
            <second_frame>  H  R  F  S  L  Y  S  I  S  P  I  H  I  F  C  V  L  Y  R  D  S  D  G  R  K  R  Q  D  S  W  F  R  C  S  K  E  G  S  I  S  E  *  Q  S  R  S  S  I  S  G  R  S  Y  C  S  F  S  E  S  R  Q  V  C  R  A  C  W  C  W  S  S  R  V  P  C  S  C  S  R  I  P  C  C  *   : G  A  *  I  S  W  K  C  S  *  G  *  Q  E  D  *  D  S  P  K  A  Y  S  V  G  C  E  E  R  *  R  A  E  Q  A  A  W  *  C  D  H  C  *  W  W  C  Y  A  Q  H  P  *  P  F  A  S  *  E  S  W  L  I  K  A  L  C  R  *  R  L  G  G  R  I  R  E  G  F  *  G  *  G  L  K  L  V  F  *  *  L  V  F  L  G  L  R  F  H  R  Y  *  V  K  S  I  M  F  F  C  W  F  S  R  S  F  *  V  L  W  *  S  V  Y  I  N  E  G  M  N  G  R  L  C  S  *  I  V  S  L  C  F  H  F  *  *  N  I  N  S  M  S  S  I  F  A </second_frame>
            <third_frame>   T  V  S  L  Y  T  A  *  V  L  F  I  F  F  V  C  Y  T  E  I  P  M  A  G  R  G  K  T  L  G  S  G  A  A  K  K  A  Q  S  R  S  S  K  A  G  L  Q  F  P  V  G  R  I  A  R  F  L  K  A  G  K  Y  A  E  R  V  G  A  G  A  P  V  Y  L  A  A  V  L  E  Y  L  A  A  E  :  V  L  E  L  A  G  N  A  A  R  D  N  K  K  T  R  I  V  P  R  H  I  Q  L  A  V  R  N  D  E  E  L  S  K  L  L  G  D  V  T  I  A  N  G  G  V  M  P  N  I  H  N  L  L  L  P  K  K  A  G  S  S  K  P  S  A  D  E  D  *  V  E  G  *  E  K  V  S  R  V  E  G  *  S  W  F  F  S  N  W  C  F  W  V  L  D  S  I  D  I  R  *  N  Q  L  C  F  S  V  G  L  V  E  A  S  R  F  Y  G  S  L  Y  I  *  M  K  G  *  M  E  D  Y  V  L  K  L  S  L  F  V  S  I  F  N  E  I  S  T  Q  *  V  L  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87492" stop="87719"/>
                    <exon start="87894" stop="88103"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLFIFFVCYTEIPMAGRGKTLGSGAAKKAQSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKPSADED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="92283" PGL_stop="93321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92283" e_stop="92555"/>
            <exon e_start="92869" e_stop="93321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92283" e_stop="92555" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92556" i_stop="92868" i_length="313"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92869" e_stop="93321" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92283" stop="92555"/>
              <exon start="92869" stop="93321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGAAATTGAATCATTTTCGCCCTTGTTTGCTTTCATACATTAGTTTTGTTTATTGCCGTTTTTCAATCTTTCAGCACCTTTACTGCAAAATTCAAAGCAAACGGTAGTAGATGTAGAAGAATGTTGTTTTGAGTTTCAATTCACGATCCCACATCCATAAATTTCTCCGACATCCCATTCCCCCTTTCTCTCTTTGTTACCATAATTTCAAATGGCTCCTAAGAACCAGAACAAGCCGCCACTTCGTACTCTTTCAGCACTCCCTTCTGAT : AGTAACTACACAGCAGGTGAGGTTTCATTAGAGAAGAGAAGGAGAATAGGGAATCCAAAAATACCGTCCACAGCTACTGGTGCAAGAACCCGGCAGGCATTAGCAGTGGTGAATGAGGTTGCAGATGTGCCTCCCGCTAGTGGTCCGCCAAGTAATGCAGGTTCAGACGGCGGGATAGTTGAGTTTAGCAAAGAAGAAGTTGAAGCTTTACTCACTGAGAAATTGAAAACCAAGAACAAGTATAATACAAAGGTAAGTGGATGAACTATTCTTCAGATTAATGGTAATACTGGTATGAATGTGGTTGTGGTTTTGGTTATTTTGTTAATTAAGGTGCTAACAGTAAAGTTAACAGAAGTAGCCAATTCTGTGCGTGGAAAGTTAACTGTTTTCATATTAACTGAATATGTATCTGCTTAATGTATATTGATGCAAAGATTTCTACTACTTCTA</gDNA_template>
            <first_frame> *  E  I  E  S  F  S  P  L  F  A  F  I  H  *  F  C  L  L  P  F  F  N  L  S  A  P  L  L  Q  N  S  K  Q  T  V  V  D  V  E  E  C  C  F  E  F  Q  F  T  I  P  H  P  *  I  S  P  T  S  H  S  P  F  L  S  L  L  P  *  F  Q  M  A  P  K  N  Q  N  K  P  P  L  R  T  L  S  A  L  P  S  D  :  S  N  Y  T  A  G  E  V  S  L  E  K  R  R  R  I  G  N  P  K  I  P  S  T  A  T  G  A  R  T  R  Q  A  L  A  V  V  N  E  V  A  D  V  P  P  A  S  G  P  P  S  N  A  G  S  D  G  G  I  V  E  F  S  K  E  E  V  E  A  L  L  T  E  K  L  K  T  K  N  K  Y  N  T  K  V  S  G  *  T  I  L  Q  I  N  G  N  T  G  M  N  V  V  V  V  L  V  I  L  L  I  K  V  L  T  V  K  L  T  E  V  A  N  S  V  R  G  K  L  T  V  F  I  L  T  E  Y  V  S  A  *  C  I  L  M  Q  R  F  L  L  L  L </first_frame>
            <second_frame>  E  K  L  N  H  F  R  P  C  L  L  S  Y  I  S  F  V  Y  C  R  F  S  I  F  Q  H  L  Y  C  K  I  Q  S  K  R  *  *  M  *  K  N  V  V  L  S  F  N  S  R  S  H  I  H  K  F  L  R  H  P  I  P  P  F  S  L  C  Y  H  N  F  K  W  L  L  R  T  R  T  S  R  H  F  V  L  F  Q  H  S  L  L  I :   V  T  T  Q  Q  V  R  F  H  *  R  R  E  G  E  *  G  I  Q  K  Y  R  P  Q  L  L  V  Q  E  P  G  R  H  *  Q  W  *  M  R  L  Q  M  C  L  P  L  V  V  R  Q  V  M  Q  V  Q  T  A  G  *  L  S  L  A  K  K  K  L  K  L  Y  S  L  R  N  *  K  P  R  T  S  I  I  Q  R  *  V  D  E  L  F  F  R  L  M  V  I  L  V  *  M  W  L  W  F  W  L  F  C  *  L  R  C  *  Q  *  S  *  Q  K  *  P  I  L  C  V  E  S  *  L  F  S  Y  *  L  N  M  Y  L  L  N  V  Y  *  C  K  D  F  Y  Y  F   </second_frame>
            <third_frame>   R  N  *  I  I  F  A  L  V  C  F  H  T  L  V  L  F  I  A  V  F  Q  S  F  S  T  F  T  A  K  F  K  A  N  G  S  R  C  R  R  M  L  F  *  V  S  I  H  D  P  T  S  I  N  F  S  D  I  P  F  P  L  S  L  F  V  T  I  I  S  N  G  S  *  E  P  E  Q  A  A  T  S  Y  S  F  S  T  P  F  *   : *  *  L  H  S  R  *  G  F  I  R  E  E  K  E  N  R  E  S  K  N  T  V  H  S  Y  W  C  K  N  P  A  G  I  S  S  G  E  *  G  C  R  C  A  S  R  *  W  S  A  K  *  C  R  F  R  R  R  D  S  *  V  *  Q  R  R  S  *  S  F  T  H  *  E  I  E  N  Q  E  Q  V  *  Y  K  G  K  W  M  N  Y  S  S  D  *  W  *  Y  W  Y  E  C  G  C  G  F  G  Y  F  V  N  *  G  A  N  S  K  V  N  R  S  S  Q  F  C  A  W  K  V  N  C  F  H  I  N  *  I  C  I  C  L  M  Y  I  D  A  K  I  S  T  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92490" stop="92555"/>
                    <exon start="92869" stop="93132"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQMAPKNQNKPPLRTLSALPSDSNYTAGEVSLEKRRRIGNPKIPSTATGARTRQALAVVNEVADVPPASGPPSNAGSDGGIVEFSKEEVEALLTEKLKTKNKYNTKVSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="98553" PGL_stop="99181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98553" e_stop="98596"/>
            <exon e_start="98771" e_stop="99181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.807" e_score="0.977"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="98553" e_stop="98596" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.807">
            <gDNA_intron_boundary i_start="98597" i_stop="98770" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="98771" e_stop="99181" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98553" stop="98596"/>
              <exon start="98771" stop="99181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345467" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCATGTGCCTTTTAGGAATTCAAAGCTCACATACCTTCTCCAG : CCCTGTCTAGGTGGTAACTCGAAGACATTAATGTTTGTTAATGTTTCACCGGATCCTCCATCTGTGGGTGAATCCCTGTGTTCACTCCGATTTGCTGCACGGGTTAATGCTTGTGAGATTGGGATCCCAAGGCGTCAAACTAGCTTGCGTCCCATAGATTCTCGCCTAAGCATTGGCTAACATTTTAGCGGAACACTCGTTCTAGCTTTTAGAATTGTTTTGTCTGTAATTCTGTATGGCAGTTTGATATTTAACTGAGAAACTATATTACCTCTAACAACATCCACCTCCAATTTGTATAGTGGATAAAGTATTTTCTTTGTATCAGTAATAGCATATGGGGCTTTGTATTACTATACTTGTCATTTTTTATGAGGAGTTACCTGTGTGATAATTTACCTCTTCTTTTTT</gDNA_template>
            <first_frame> S  M  C  L  L  G  I  Q  S  S  H  T  F  S  S :   P  V  *  V  V  T  R  R  H  *  C  L  L  M  F  H  R  I  L  H  L  W  V  N  P  C  V  H  S  D  L  L  H  G  L  M  L  V  R  L  G  S  Q  G  V  K  L  A  C  V  P  *  I  L  A  *  A  L  A  N  I  L  A  E  H  S  F  *  L  L  E  L  F  C  L  *  F  C  M  A  V  *  Y  L  T  E  K  L  Y  Y  L  *  Q  H  P  P  P  I  C  I  V  D  K  V  F  S  L  Y  Q  *  *  H  M  G  L  C  I  T  I  L  V  I  F  Y  E  E  L  P  V  *  *  F  T  S  S  F   </first_frame>
            <second_frame>  A  C  A  F  *  E  F  K  A  H  I  P  S  P   : A  L  S  R  W  *  L  E  D  I  N  V  C  *  C  F  T  G  S  S  I  C  G  *  I  P  V  F  T  P  I  C  C  T  G  *  C  L  *  D  W  D  P  K  A  S  N  *  L  A  S  H  R  F  S  P  K  H  W  L  T  F  *  R  N  T  R  S  S  F  *  N  C  F  V  C  N  S  V  W  Q  F  D  I  *  L  R  N  Y  I  T  S  N  N  I  H  L  Q  F  V  *  W  I  K  Y  F  L  C  I  S  N  S  I  W  G  F  V  L  L  Y  L  S  F  F  M  R  S  Y  L  C  D  N  L  P  L  L  F  </second_frame>
            <third_frame>   H  V  P  F  R  N  S  K  L  T  Y  L  L  Q  :  P  C  L  G  G  N  S  K  T  L  M  F  V  N  V  S  P  D  P  P  S  V  G  E  S  L  C  S  L  R  F  A  A  R  V  N  A  C  E  I  G  I  P  R  R  Q  T  S  L  R  P  I  D  S  R  L  S  I  G  *  H  F  S  G  T  L  V  L  A  F  R  I  V  L  S  V  I  L  Y  G  S  L  I  F  N  *  E  T  I  L  P  L  T  T  S  T  S  N  L  Y  S  G  *  S  I  F  F  V  S  V  I  A  Y  G  A  L  Y  Y  Y  T  C  H  F  L  *  G  V  T  C  V  I  I  Y  L  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98555" stop="98596"/>
                    <exon start="98771" stop="98950"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVPFRNSKLTYLLQPCLGGNSKTLMFVNVSPDPPSVGESLCSLRFAARVNACEIGIPRRQTSLRPIDSRLSIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="99583" PGL_stop="100808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99583" e_stop="100808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="99583" e_stop="100808" e_length="1226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99583" stop="100808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTGCAAGTATTTTCTTTGCAAAAACTCTATTCCCTTGGACAAGAATTGACTTCAAATGGCTTCTAATCTTGTAAAATTTCATTCTTCATTCCAGTTCAAGCTGAACACAACAAGTTCCTTAAGTTTTTTAGGATCAAAACAACAACTTAACAATCTTTATCACTCTATTTTCTTCACAAAACCCAAGTCAGATTTTTCACCTCTTCAATGTTCACTATCTTCTCCTACTCCACCTATAACTAAAGAAGATGCCGTTTCTCAAGCAAAATTCTCTCTGTCAACTACTTTAGAGAAACCCCTTAACAATCCCAAACTCATAGGGAAAATCAAGAAACTCAAACAACCAAGATTTCGTGTCGAAATTCCAGTTGTTGATGACTCCCCATCTGCATTAGCCCAACTTGCTTTTGACATTTTTGGAGAAATGCCCATCAAAAGAAAAGCCCCAAACATCAAGATTCTACTTTTATGGCCTAACCAAACCTTAACCCAAGCTGCACAAGCAGAATTTGAAAAGAAGAAATCTTCAAACCCCATCATTGAAAATTTAGATATTTCATCAAGAATTGAAATTTCTGCTGATGTGGTAGTGTTTATGGCTCCAGAGGCTTCAATATTGACTGTAATGAAGGAGATTTCTGATACATTGTACCCAATGCCTGTCGTGATTTTTAATCCTAAATGGGGTTTTGATGAAGAGAGTAGTTTTGGTGAGTTGAGTGGATTTGTAGGTTCATTTGAGGTTGTGTATTCATTTATGGGATTGGAAGTTAGAGGGATATTGAGTAATAGAAAAGGGGTGATGTTTAAATGTGTTAAAGATGGTGTTTTGAGTGGTGAGAAATGGTATGTGTTCGTCGAAGAAGATGGAGAGTTGAAAGTGGTTTCAAGGTTTAAAGCAAGGCCATCAATTGTTGAAGTTGAGAATGTTTTGTATAACTTGATGGCCGTGAATTCGCCAATCACGAAATCAGCTAAGTTCTTGAAAGATTTGGTGTCAAATGTTAGGGGGAAAAAGTAAAGCACAAGCAATTCAAGGTATTACAACTCACATCATTTCAACTTTAGGATAGCTATCCTTTGCAATGATATTATTGTTTTTTCGAGATTTTGTTCTTCCTAGAACAGTTACAGTATGAAGTCCATGTACTAGCTTTGCCAGGTTCAAAACTTTAACATGGAAGAACAAATAATAACCTATTGGCTGCATGAACTAAGCATC</gDNA_template>
            <first_frame> K  I  A  S  I  F  F  A  K  T  L  F  P  W  T  R  I  D  F  K  W  L  L  I  L  *  N  F  I  L  H  S  S  S  S  *  T  Q  Q  V  P  *  V  F  *  D  Q  N  N  N  L  T  I  F  I  T  L  F  S  S  Q  N  P  S  Q  I  F  H  L  F  N  V  H  Y  L  L  L  L  H  L  *  L  K  K  M  P  F  L  K  Q  N  S  L  C  Q  L  L  *  R  N  P  L  T  I  P  N  S  *  G  K  S  R  N  S  N  N  Q  D  F  V  S  K  F  Q  L  L  M  T  P  H  L  H  *  P  N  L  L  L  T  F  L  E  K  C  P  S  K  E  K  P  Q  T  S  R  F  Y  F  Y  G  L  T  K  P  *  P  K  L  H  K  Q  N  L  K  R  R  N  L  Q  T  P  S  L  K  I  *  I  F  H  Q  E  L  K  F  L  L  M  W  *  C  L  W  L  Q  R  L  Q  Y  *  L  *  *  R  R  F  L  I  H  C  T  Q  C  L  S  *  F  L  I  L  N  G  V  L  M  K  R  V  V  L  V  S  *  V  D  L  *  V  H  L  R  L  C  I  H  L  W  D  W  K  L  E  G  Y  *  V  I  E  K  G  *  C  L  N  V  L  K  M  V  F  *  V  V  R  N  G  M  C  S  S  K  K  M  E  S  *  K  W  F  Q  G  L  K  Q  G  H  Q  L  L  K  L  R  M  F  C  I  T  *  W  P  *  I  R  Q  S  R  N  Q  L  S  S  *  K  I  W  C  Q  M  L  G  G  K  S  K  A  Q  A  I  Q  G  I  T  T  H  I  I  S  T  L  G  *  L  S  F  A  M  I  L  L  F  F  R  D  F  V  L  P  R  T  V  T  V  *  S  P  C  T  S  F  A  R  F  K  T  L  T  W  K  N  K  *  *  P  I  G  C  M  N  *  A   </first_frame>
            <second_frame>  K  L  Q  V  F  S  L  Q  K  L  Y  S  L  G  Q  E  L  T  S  N  G  F  *  S  C  K  I  S  F  F  I  P  V  Q  A  E  H  N  K  F  L  K  F  F  R  I  K  T  T  T  *  Q  S  L  S  L  Y  F  L  H  K  T  Q  V  R  F  F  T  S  S  M  F  T  I  F  S  Y  S  T  Y  N  *  R  R  C  R  F  S  S  K  I  L  S  V  N  Y  F  R  E  T  P  *  Q  S  Q  T  H  R  E  N  Q  E  T  Q  T  T  K  I  S  C  R  N  S  S  C  *  *  L  P  I  C  I  S  P  T  C  F  *  H  F  W  R  N  A  H  Q  K  K  S  P  K  H  Q  D  S  T  F  M  A  *  P  N  L  N  P  S  C  T  S  R  I  *  K  E  E  I  F  K  P  H  H  *  K  F  R  Y  F  I  K  N  *  N  F  C  *  C  G  S  V  Y  G  S  R  G  F  N  I  D  C  N  E  G  D  F  *  Y  I  V  P  N  A  C  R  D  F  *  S  *  M  G  F  *  *  R  E  *  F  W  *  V  E  W  I  C  R  F  I  *  G  C  V  F  I  Y  G  I  G  S  *  R  D  I  E  *  *  K  R  G  D  V  *  M  C  *  R  W  C  F  E  W  *  E  M  V  C  V  R  R  R  R  W  R  V  E  S  G  F  K  V  *  S  K  A  I  N  C  *  S  *  E  C  F  V  *  L  D  G  R  E  F  A  N  H  E  I  S  *  V  L  E  R  F  G  V  K  C  *  G  E  K  V  K  H  K  Q  F  K  V  L  Q  L  T  S  F  Q  L  *  D  S  Y  P  L  Q  *  Y  Y  C  F  F  E  I  L  F  F  L  E  Q  L  Q  Y  E  V  H  V  L  A  L  P  G  S  K  L  *  H  G  R  T  N  N  N  L  L  A  A  *  T  K  H  </second_frame>
            <third_frame>   N  C  K  Y  F  L  C  K  N  S  I  P  L  D  K  N  *  L  Q  M  A  S  N  L  V  K  F  H  S  S  F  Q  F  K  L  N  T  T  S  S  L  S  F  L  G  S  K  Q  Q  L  N  N  L  Y  H  S  I  F  F  T  K  P  K  S  D  F  S  P  L  Q  C  S  L  S  S  P  T  P  P  I  T  K  E  D  A  V  S  Q  A  K  F  S  L  S  T  T  L  E  K  P  L  N  N  P  K  L  I  G  K  I  K  K  L  K  Q  P  R  F  R  V  E  I  P  V  V  D  D  S  P  S  A  L  A  Q  L  A  F  D  I  F  G  E  M  P  I  K  R  K  A  P  N  I  K  I  L  L  L  W  P  N  Q  T  L  T  Q  A  A  Q  A  E  F  E  K  K  K  S  S  N  P  I  I  E  N  L  D  I  S  S  R  I  E  I  S  A  D  V  V  V  F  M  A  P  E  A  S  I  L  T  V  M  K  E  I  S  D  T  L  Y  P  M  P  V  V  I  F  N  P  K  W  G  F  D  E  E  S  S  F  G  E  L  S  G  F  V  G  S  F  E  V  V  Y  S  F  M  G  L  E  V  R  G  I  L  S  N  R  K  G  V  M  F  K  C  V  K  D  G  V  L  S  G  E  K  W  Y  V  F  V  E  E  D  G  E  L  K  V  V  S  R  F  K  A  R  P  S  I  V  E  V  E  N  V  L  Y  N  L  M  A  V  N  S  P  I  T  K  S  A  K  F  L  K  D  L  V  S  N  V  R  G  K  K  *  S  T  S  N  S  R  Y  Y  N  S  H  H  F  N  F  R  I  A  I  L  C  N  D  I  I  V  F  S  R  F  C  S  S  *  N  S  Y  S  M  K  S  M  Y  *  L  C  Q  V  Q  N  F  N  M  E  E  Q  I  I  T  Y  W  L  H  E  L  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99636" stop="100607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQMASNLVKFHSSFQFKLNTTSSLSFLGSKQQLNNLYHSIFFTKPKSDFSPLQCSLSSPTPPITKEDAVSQAKFSLSTTLEKPLNNPKLIGKIKKLKQPRFRVEIPVVDDSPSALAQLAFDIFGEMPIKRKAPNIKILLLWPNQTLTQAAQAEFEKKKSSNPIIENLDISSRIEISADVVVFMAPEASILTVMKEISDTLYPMPVVIFNPKWGFDEESSFGELSGFVGSFEVVYSFMGLEVRGILSNRKGVMFKCVKDGVLSGEKWYVFVEEDGELKVVSRFKARPSIVEVENVLYNLMAVNSPITKSAKFLKDLVSNVRGKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="102632" PGL_stop="101676"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102632" e_stop="102193"/>
            <exon e_start="102101" e_stop="101676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102632" e_stop="102193" e_length="440"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="102192" i_stop="102102" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="102101" e_stop="101676" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102632" stop="102193"/>
              <exon start="102101" stop="101676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAGACAATATGCAGATTCAGGCCTTCTAAAAGCAAATCATTGCCTGCTTGTTTTTTCATCTCCGGGCTGTATGACACAGTATGCATTGCGCATGTGTTCTGAGCTAGATTCTATTGCAACCTTTCCTGCTATGGGCTCAACTTATGAGGAAGATCTTGAAACAAAATTAGTGGTAGAGGCAATCCAAAAGTGGAATATTTTCCAGAAACAAAATTACAAAGAACGAGTTGATAATGCTGATATATATGGTGAATTTGGATGTTCTGATAGCAGTAAAGTATTTCCTGAAGGAATAACCAAGGGAAACAGTCTCTCTTCAGAGACTAGGGACACATTTATTAAAGAAAAGATAAGATCTGAGCTAGGACATCATATATACATATCCGAAGCAGAACTCCAAATGCATAAACCTCATAATCAAGTGTGGGCAAAACCTGAG : GTAAGTTTTCGATCATTTGTCATGGATAGGATTCACTTGGATGACGAAGGTCGTGGAGAGGCTGAGGTTGAAGTAATACCAACTCGTATGGTTGAGGCCAAGTCAAAACGTTTATTTCCAGCATTGAACTTCACCATGGCAGAGGAACCGAGAAGGATAATGTTGGAACGACATGCCAAACGAGTAGTGCCTTTGTAAATGGTAGTGACAACACTAGCCTATATTATGTAAATGATATAAGAAGCTCCATGGAGACTACACAATCTAAGTGTGTAAATACTAACCTAGATATTACAGAAACTGTCACTCATTTAGAAGATGAAGCAGGTTAGTTGTTTATTTGAATTTGAAGGCAACGAAATGAATTGCAACTTTAATTTTTTTTTGCTTTTGTTAGTTGTTATCTATTTTGTTCTGAATTCAGTA</gDNA_template>
            <first_frame> L  D  N  M  Q  I  Q  A  F  *  K  Q  I  I  A  C  L  F  F  H  L  R  A  V  *  H  S  M  H  C  A  C  V  L  S  *  I  L  L  Q  P  F  L  L  W  A  Q  L  M  R  K  I  L  K  Q  N  *  W  *  R  Q  S  K  S  G  I  F  S  R  N  K  I  T  K  N  E  L  I  M  L  I  Y  M  V  N  L  D  V  L  I  A  V  K  Y  F  L  K  E  *  P  R  E  T  V  S  L  Q  R  L  G  T  H  L  L  K  K  R  *  D  L  S  *  D  I  I  Y  T  Y  P  K  Q  N  S  K  C  I  N  L  I  I  K  C  G  Q  N  L  R :   *  V  F  D  H  L  S  W  I  G  F  T  W  M  T  K  V  V  E  R  L  R  L  K  *  Y  Q  L  V  W  L  R  P  S  Q  N  V  Y  F  Q  H  *  T  S  P  W  Q  R  N  R  E  G  *  C  W  N  D  M  P  N  E  *  C  L  C  K  W  *  *  Q  H  *  P  I  L  C  K  *  Y  K  K  L  H  G  D  Y  T  I  *  V  C  K  Y  *  P  R  Y  Y  R  N  C  H  S  F  R  R  *  S  R  L  V  V  Y  L  N  L  K  A  T  K  *  I  A  T  L  I  F  F  C  F  C  *  L  L  S  I  L  F  *  I  Q   </first_frame>
            <second_frame>  *  T  I  C  R  F  R  P  S  K  S  K  S  L  P  A  C  F  F  I  S  G  L  Y  D  T  V  C  I  A  H  V  F  *  A  R  F  Y  C  N  L  S  C  Y  G  L  N  L  *  G  R  S  *  N  K  I  S  G  R  G  N  P  K  V  E  Y  F  P  E  T  K  L  Q  R  T  S  *  *  C  *  Y  I  W  *  I  W  M  F  *  *  Q  *  S  I  S  *  R  N  N  Q  G  K  Q  S  L  F  R  D  *  G  H  I  Y  *  R  K  D  K  I  *  A  R  T  S  Y  I  H  I  R  S  R  T  P  N  A  *  T  S  *  S  S  V  G  K  T  *   : G  K  F  S  I  I  C  H  G  *  D  S  L  G  *  R  R  S  W  R  G  *  G  *  S  N  T  N  S  Y  G  *  G  Q  V  K  T  F  I  S  S  I  E  L  H  H  G  R  G  T  E  K  D  N  V  G  T  T  C  Q  T  S  S  A  F  V  N  G  S  D  N  T  S  L  Y  Y  V  N  D  I  R  S  S  M  E  T  T  Q  S  K  C  V  N  T  N  L  D  I  T  E  T  V  T  H  L  E  D  E  A  G  *  L  F  I  *  I  *  R  Q  R  N  E  L  Q  L  *  F  F  F  A  F  V  S  C  Y  L  F  C  S  E  F  S  </second_frame>
            <third_frame>   R  Q  Y  A  D  S  G  L  L  K  A  N  H  C  L  L  V  F  S  S  P  G  C  M  T  Q  Y  A  L  R  M  C  S  E  L  D  S  I  A  T  F  P  A  M  G  S  T  Y  E  E  D  L  E  T  K  L  V  V  E  A  I  Q  K  W  N  I  F  Q  K  Q  N  Y  K  E  R  V  D  N  A  D  I  Y  G  E  F  G  C  S  D  S  S  K  V  F  P  E  G  I  T  K  G  N  S  L  S  S  E  T  R  D  T  F  I  K  E  K  I  R  S  E  L  G  H  H  I  Y  I  S  E  A  E  L  Q  M  H  K  P  H  N  Q  V  W  A  K  P  E  :  V  S  F  R  S  F  V  M  D  R  I  H  L  D  D  E  G  R  G  E  A  E  V  E  V  I  P  T  R  M  V  E  A  K  S  K  R  L  F  P  A  L  N  F  T  M  A  E  E  P  R  R  I  M  L  E  R  H  A  K  R  V  V  P  L  *  M  V  V  T  T  L  A  Y  I  M  *  M  I  *  E  A  P  W  R  L  H  N  L  S  V  *  I  L  T  *  I  L  Q  K  L  S  L  I  *  K  M  K  Q  V  S  C  L  F  E  F  E  G  N  E  M  N  C  N  F  N  F  F  L  L  L  L  V  V  I  Y  F  V  L  N  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102630" stop="102193"/>
                    <exon start="102101" stop="101904"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQYADSGLLKANHCLLVFSSPGCMTQYALRMCSELDSIATFPAMGSTYEEDLETKLVVEAIQKWNIFQKQNYKERVDNADIYGEFGCSDSSKVFPEGITKGNSLSSETRDTFIKEKIRSELGHHIYISEAELQMHKPHNQVWAKPEVSFRSFVMDRIHLDDEGRGEAEVEVIPTRMVEAKSKRLFPALNFTMAEEPRRIMLERHAKRVVPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="108604" PGL_stop="107905"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108604" e_stop="107905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="108604" e_stop="107905" e_length="700"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108604" stop="107905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328138" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATTAATGTCATCGTTCTCCAATTGCTGAAAACCCCAAAACATGTCTGACCATACATGTTGTTATCGTTGCACCAAATTCATATTAACTGCAGGCTTAACAGCTCTCTTTATCTGGCTAAGTCTAAGAACCTCAAAACCATCATGCTCTTTACATAATTTTTACTTACCTGCCCTTAACATATCTGATCATTCGAACACCACAAGATCCAATCATACTCTGTATTTTCAGCTCAATTTGAACAACAAGATGAAGGACAAAGGTGTTCGTTACGACGAGATTATATTAAGCTTCTTCTACTATGGTACAAATACAAGTATCCCAATTGGTAATAGCACAATAAATGGATTTTACCAAGGCCATGACAAGAAAGCAAAGAAAAAAGGGAAACTGGAAATTCAGAAAATGGCTTGGGATGCTGCTTTTAAGAATGTTACAAATACATCAAAAGTGATTTTTAGGGTGGATTTGGCTACAAGAATAAGCTACAAGACTATTTTTTGGTTTAGCAAGAAACATAATTTTACTGTGGAAAATAGAACAATGGAAGTGGATAGTACAGGTAAATCAAGTGCACAACACATTCATTGCTATTTTATGGTTTTAGGTTTTCCTCTAATTGTTTTGGTTAGCTTGATTCTTTTGTTGTAAATAAATGACTGGCACTATTCAACTCAATATTTTCTTCCTTTTGGTTTC</gDNA_template>
            <first_frame> N  I  N  V  I  V  L  Q  L  L  K  T  P  K  H  V  *  P  Y  M  L  L  S  L  H  Q  I  H  I  N  C  R  L  N  S  S  L  Y  L  A  K  S  K  N  L  K  T  I  M  L  F  T  *  F  L  L  T  C  P  *  H  I  *  S  F  E  H  H  K  I  Q  S  Y  S  V  F  S  A  Q  F  E  Q  Q  D  E  G  Q  R  C  S  L  R  R  D  Y  I  K  L  L  L  L  W  Y  K  Y  K  Y  P  N  W  *  *  H  N  K  W  I  L  P  R  P  *  Q  E  S  K  E  K  R  E  T  G  N  S  E  N  G  L  G  C  C  F  *  E  C  Y  K  Y  I  K  S  D  F  *  G  G  F  G  Y  K  N  K  L  Q  D  Y  F  L  V  *  Q  E  T  *  F  Y  C  G  K  *  N  N  G  S  G  *  Y  R  *  I  K  C  T  T  H  S  L  L  F  Y  G  F  R  F  S  S  N  C  F  G  *  L  D  S  F  V  V  N  K  *  L  A  L  F  N  S  I  F  S  S  F  W  F  </first_frame>
            <second_frame>  I  L  M  S  S  F  S  N  C  *  K  P  Q  N  M  S  D  H  T  C  C  Y  R  C  T  K  F  I  L  T  A  G  L  T  A  L  F  I  W  L  S  L  R  T  S  K  P  S  C  S  L  H  N  F  Y  L  P  A  L  N  I  S  D  H  S  N  T  T  R  S  N  H  T  L  Y  F  Q  L  N  L  N  N  K  M  K  D  K  G  V  R  Y  D  E  I  I  L  S  F  F  Y  Y  G  T  N  T  S  I  P  I  G  N  S  T  I  N  G  F  Y  Q  G  H  D  K  K  A  K  K  K  G  K  L  E  I  Q  K  M  A  W  D  A  A  F  K  N  V  T  N  T  S  K  V  I  F  R  V  D  L  A  T  R  I  S  Y  K  T  I  F  W  F  S  K  K  H  N  F  T  V  E  N  R  T  M  E  V  D  S  T  G  K  S  S  A  Q  H  I  H  C  Y  F  M  V  L  G  F  P  L  I  V  L  V  S  L  I  L  L  L  *  I  N  D  W  H  Y  S  T  Q  Y  F  L  P  F  G  F </second_frame>
            <third_frame>   Y  *  C  H  R  S  P  I  A  E  N  P  K  T  C  L  T  I  H  V  V  I  V  A  P  N  S  Y  *  L  Q  A  *  Q  L  S  L  S  G  *  V  *  E  P  Q  N  H  H  A  L  Y  I  I  F  T  Y  L  P  L  T  Y  L  I  I  R  T  P  Q  D  P  I  I  L  C  I  F  S  S  I  *  T  T  R  *  R  T  K  V  F  V  T  T  R  L  Y  *  A  S  S  T  M  V  Q  I  Q  V  S  Q  L  V  I  A  Q  *  M  D  F  T  K  A  M  T  R  K  Q  R  K  K  G  N  W  K  F  R  K  W  L  G  M  L  L  L  R  M  L  Q  I  H  Q  K  *  F  L  G  W  I  W  L  Q  E  *  A  T  R  L  F  F  G  L  A  R  N  I  I  L  L  W  K  I  E  Q  W  K  W  I  V  Q  V  N  Q  V  H  N  T  F  I  A  I  L  W  F  *  V  F  L  *  L  F  W  L  A  *  F  F  C  C  K  *  M  T  G  T  I  Q  L  N  I  F  F  L  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108573" stop="107953"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPQNMSDHTCCYRCTKFILTAGLTALFIWLSLRTSKPSCSLHNFYLPALNISDHSNTTRSNHTLYFQLNLNNKMKDKGVRYDEIILSFFYYGTNTSIPIGNSTINGFYQGHDKKAKKKGKLEIQKMAWDAAFKNVTNTSKVIFRVDLATRISYKTIFWFSKKHNFTVENRTMEVDSTGKSSAQHIHCYFMVLGFPLIVLVSLILLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="110282" PGL_stop="108648"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110282" e_stop="110184"/>
            <exon e_start="110069" e_stop="109815"/>
            <exon e_start="109632" e_stop="109549"/>
            <exon e_start="109449" e_stop="109112"/>
            <exon e_start="108677" e_stop="108648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.609" e_score="0.980"/>
          <exon-intron don_prob="0.988" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.988"/>
          <exon-only e_score="0.633"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="110282" e_stop="110184" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.609">
            <gDNA_intron_boundary i_start="110183" i_stop="110070" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110069" e_stop="109815" e_length="255"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.959">
            <gDNA_intron_boundary i_start="109814" i_stop="109633" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109632" e_stop="109549" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.950">
            <gDNA_intron_boundary i_start="109548" i_stop="109450" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="109449" e_stop="109112" e_length="338"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109111" i_stop="108678" i_length="434"/>
          </intron>
          <exon e_serial="5" e_score="0.633">
            <gDNA_exon_boundary e_start="108677" e_stop="108648" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110282" stop="110184"/>
              <exon start="110069" stop="109815"/>
              <exon start="109632" stop="109549"/>
              <exon start="109449" stop="109112"/>
              <exon start="108677" stop="108648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGACATTAGGTGGAGGAAATTACGTGTTTGCTTTTCGGATGCTCATGGTTATGTTCCGTCGAGAATTTTCTTTCTCTGATTCGTTATATCTTTGGGAG : ATGATGTGGTCTCTGGAATATGATCCTGAGTTATTTTCCATGTATGAAGAAGACCCTGACTTGACTGCTGAAAATTCTAGACGAGCAAAAGTTAAGTCGATACGTCAGTATGGGAAATATGAGAGAGAAAACATGAGAAGTGGAGGTAAAGATACAGAAGCTCCCCTCCCAATTTCTGTTTTCCTAGTAGCCAGCGTCCTGAAGGACAAGAGTGCGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAG : ATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGCTATGAAGCTTCACAAGAAGTATCTTAAGAAG : GCAGCCAACACTAATAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCACTGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTTATATATTTTGGGCTGGTCGATGAACATTAGCTGCTTTTGCTATTGTAGTTATGTTATGATGTGCTAAGACGTAATTGTTGTATTCAATCCAAATGTAATGTACAAGGACACACTTCCAAAGTTTGTACTATAATCTCAGGAACAAAACAATGTTCCATATTTGTAAGGGATAGCTTCAAATATATTATAATAAATATACTCATGTTTTTATAGACATTATAA : AAAAAGCAAAAAAAAATGGATTTTTCCCAG</gDNA_template>
            <first_frame> E  T  L  G  G  G  N  Y  V  F  A  F  R  M  L  M  V  M  F  R  R  E  F  S  F  S  D  S  L  Y  L  W  E  :  M  M  W  S  L  E  Y  D  P  E  L  F  S  M  Y  E  E  D  P  D  L  T  A  E  N  S  R  R  A  K  V  K  S  I  R  Q  Y  G  K  Y  E  R  E  N  M  R  S  G  G  K  D  T  E  A  P  L  P  I  S  V  F  L  V  A  S  V  L  K  D  K  S  A  K  L  T  E  A  R  G  L  D  E  V  V  K  :  I  L  N  N  I  T  G  H  L  D  A  R  K  A  C  S  S  A  M  K  L  H  K  K  Y  L  K  K  :  A  A  N  T  N  R  *  S  S  R  G  E  Y  Y  V  I  F  S  L  N  L  T  T  T  S  S  R  C  W  P  R  R  Y  D  K  N  L  Y  L  Y  I  L  G  W  S  M  N  I  S  C  F  C  Y  C  S  Y  V  M  M  C  *  D  V  I  V  V  F  N  P  N  V  M  Y  K  D  T  L  P  K  F  V  L  *  S  Q  E  Q  N  N  V  P  Y  L  *  G  I  A  S  N  I  L  *  *  I  Y  S  C  F  Y  R  H  Y  K :   K  S  K  K  K  W  I  F  P   </first_frame>
            <second_frame>  R  H  *  V  E  E  I  T  C  L  L  F  G  C  S  W  L  C  S  V  E  N  F  L  S  L  I  R  Y  I  F  G  R :   *  C  G  L  W  N  M  I  L  S  Y  F  P  C  M  K  K  T  L  T  *  L  L  K  I  L  D  E  Q  K  L  S  R  Y  V  S  M  G  N  M  R  E  K  T  *  E  V  E  V  K  I  Q  K  L  P  S  Q  F  L  F  S  *  *  P  A  S  *  R  T  R  V  R  S  *  Q  K  L  E  D  W  T  K  L  L  R :   S  *  I  I  L  L  D  T  W  M  P  E  R  L  A  V  A  L  *  S  F  T  R  S  I  L  R  R :   Q  P  T  L  I  G  S  R  A  E  A  S  T  M  *  Y  S  H  *  T  *  R  Q  H  L  L  V  A  G  Q  E  G  M  T  R  I  Y  I  Y  I  F  W  A  G  R  *  T  L  A  A  F  A  I  V  V  M  L  *  C  A  K  T  *  L  L  Y  S  I  Q  M  *  C  T  R  T  H  F  Q  S  L  Y  Y  N  L  R  N  K  T  M  F  H  I  C  K  G  *  L  Q  I  Y  Y  N  K  Y  T  H  V  F  I  D  I  I   : K  K  A  K  K  N  G  F  F  P  </second_frame>
            <third_frame>   D  I  R  W  R  K  L  R  V  C  F  S  D  A  H  G  Y  V  P  S  R  I  F  F  L  *  F  V  I  S  L  G   : D  D  V  V  S  G  I  *  S  *  V  I  F  H  V  *  R  R  P  *  L  D  C  *  K  F  *  T  S  K  S  *  V  D  T  S  V  W  E  I  *  E  R  K  H  E  K  W  R  *  R  Y  R  S  S  P  P  N  F  C  F  P  S  S  Q  R  P  E  G  Q  E  C  E  A  N  R  S  *  R  T  G  R  S  C  *   : D  P  E  *  Y  Y  W  T  L  G  C  Q  K  G  L  Q  *  R  Y  E  A  S  Q  E  V  S  *  E   : G  S  Q  H  *  *  V  V  E  Q  R  R  V  L  C  N  I  L  T  E  L  N  D  N  I  F  S  L  L  A  K  K  V  *  Q  E  S  I  F  I  Y  F  G  L  V  D  E  H  *  L  L  L  L  L  *  L  C  Y  D  V  L  R  R  N  C  C  I  Q  S  K  C  N  V  Q  G  H  T  S  K  V  C  T  I  I  S  G  T  K  Q  C  S  I  F  V  R  D  S  F  K  Y  I  I  I  N  I  L  M  F  L  *  T  L  *  :  K  K  Q  K  K  M  D  F  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110282" stop="110184"/>
                    <exon start="110069" stop="109815"/>
                    <exon start="109632" stop="109549"/>
                    <exon start="109449" stop="109429"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETLGGGNYVFAFRMLMVMFRREFSFSDSLYLWEMMWSLEYDPELFSMYEEDPDLTAENSRRAKVKSIRQYGKYERENMRSGGKDTEAPLPISVFLVASVLKDKSAKLTEARGLDEVVKILNNITGHLDARKACSSAMKLHKKYLKKAANTNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="114796" PGL_stop="110411"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114796" e_stop="114672"/>
            <exon e_start="114595" e_stop="114545"/>
            <exon e_start="112755" e_stop="112660"/>
            <exon e_start="112431" e_stop="112328"/>
            <exon e_start="111969" e_stop="111800"/>
            <exon e_start="111680" e_stop="111603"/>
            <exon e_start="111384" e_stop="111262"/>
            <exon e_start="110808" e_stop="110720"/>
            <exon e_start="110502" e_stop="110411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.556" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.678" e_score="0.994"/>
          <exon-intron don_prob="0.685" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.957" e_score="0.992"/>
          <exon-intron don_prob="0.992" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114796" e_stop="114672" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114671" i_stop="114596" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114595" e_stop="114545" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="114544" i_stop="112756" i_length="1789"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112755" e_stop="112660" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.915" acc_prob="0.556">
            <gDNA_intron_boundary i_start="112659" i_stop="112432" i_length="228"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112431" e_stop="112328" e_length="104"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.956">
            <gDNA_intron_boundary i_start="112327" i_stop="111970" i_length="358"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="111969" e_stop="111800" e_length="170"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.678">
            <gDNA_intron_boundary i_start="111799" i_stop="111681" i_length="119"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="111680" e_stop="111603" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.685" acc_prob="0.972">
            <gDNA_intron_boundary i_start="111602" i_stop="111385" i_length="218"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="111384" e_stop="111262" e_length="123"/>
          </exon>
          <intron i_serial="7" don_prob="0.949" acc_prob="0.957">
            <gDNA_intron_boundary i_start="111261" i_stop="110809" i_length="453"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="110808" e_stop="110720" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.961">
            <gDNA_intron_boundary i_start="110719" i_stop="110503" i_length="217"/>
          </intron>
          <exon e_serial="9" e_score="0.978">
            <gDNA_exon_boundary e_start="110502" e_stop="110411" e_length="92"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114796" stop="114672"/>
              <exon start="114595" stop="114545"/>
              <exon start="112755" stop="112660"/>
              <exon start="112431" stop="112328"/>
              <exon start="111969" stop="111800"/>
              <exon start="111680" stop="111603"/>
              <exon start="111384" stop="111262"/>
              <exon start="110808" stop="110720"/>
              <exon start="110502" stop="110411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322957" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTTGTTGAAATTCTTGATCAAAGTTGTTGGTATTGAATTTTAGATTTTTGAGGAGTTTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAG : GTCCGTCCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAG : GTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGG : GGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAG : GGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTGGTCGGTTTATTTCTGCACCTGTAATCACTGAAGATGGTGACCCTATTCTAGATCCTATAGTTCTTCAAGAGTTGAATGCGGCAAAAGAACCAACTTCAGCTGGTCAAGTTG : GTCCATCTGATGGTTTTGAATTGGTGAAGGAGCATGACAAAAAAGTAATCCAGTGGAAACTCTCATTACACCAGATAG : GATTGGATGTGATTCGTACTGACCGGACACTTGTCTTTTATGAGAAACAAGAGAATCTATCAAAGCTTTGGGATATTTTGGCTGTTTATGCTTGGTTTGACAAAGAAGTTAGTTATTGTCAAG : GAATGAGTGATCTTTGTTCTCCCATGATTATTCTACTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAACGTATGATGAAGAGACTG : AGAAAAAATTTCAGAGCTACTGGGAACTCTGTTGGAGTGGAGGCGCAGCTAAGTTATCTAGCATCAATAACTCAAGTTATCGATCCCAAACT</gDNA_template>
            <first_frame> L  V  V  E  I  L  D  Q  S  C  W  Y  *  I  L  D  F  *  G  V  S  K  V  T  K  F  E  A  C  G  G  T  M  E  L  L  L  I  H  F  I  R :   S  V  L  N  V  L  M  M  F  L  K  P  S  L  E  S  R :   L  G  K  L  *  V  Q  E  D  G  M  L  H  L  P  P  K  V  I  L  I  *  A  K  Y  L  V  E  F  V  V  G :   E  S  I  H  Q  L  E  V  K  F  G  S  S  Y  W  A  V  M  I  Q  R  A  H  L  R  N  E  S  N  Y  D  N  V  G   : G  Y  S  M  Q  H  *  K  K  N  V  V  G  C  F  P  *  L  E  V  V  G  L  F  L  H  L  *  S  L  K  M  V  T  L  F  *  I  L  *  F  F  K  S  *  M  R  Q  K  N  Q  L  Q  L  V  K  L  :  V  H  L  M  V  L  N  W  *  R  S  M  T  K  K  *  S  S  G  N  S  H  Y  T  R  *  :  D  W  M  *  F  V  L  T  G  H  L  S  F  M  R  N  K  R  I  Y  Q  S  F  G  I  F  W  L  F  M  L  G  L  T  K  K  L  V  I  V  K  :  E  *  V  I  F  V  L  P  *  L  F  Y  L  M  M  K  Q  M  H  F  G  A  L  N  V  *  *  R  D  * :   E  K  I  S  E  L  L  G  T  L  L  E  W  R  R  S  *  V  I  *  H  Q  *  L  K  L  S  I  P  N  </first_frame>
            <second_frame>  L  L  L  K  F  L  I  K  V  V  G  I  E  F  *  I  F  E  E  F  P  K  *  Q  S  L  K  H  V  E  E  L  W  S  F  C  *  F  I  L  S   : G  P  S  *  M  C  *  *  C  S  *  N  Q  V  *  N  Q   : G  W  E  N  F  K  F  K  K  M  A  C  C  I  Y  P  R  R  L  S  *  Y  R  Q  N  T  W  S  S  L  S  W   : G  N  P  S  I  N  *  R  *  S  L  G  V  L  T  G  L  L  *  F  K  E  H  I  *  G  T  R  A  I  T  T  T  S  E  :  G  T  V  C  S  I  E  R  R  M  S  W  D  V  S  L  N  W  K  W  S  V  Y  F  C  T  C  N  H  *  R  W  *  P  Y  S  R  S  Y  S  S  S  R  V  E  C  G  K  R  T  N  F  S  W  S  S  W :   S  I  *  W  F  *  I  G  E  G  A  *  Q  K  S  N  P  V  E  T  L  I  T  P  D  R :   I  G  C  D  S  Y  *  P  D  T  C  L  L  *  E  T  R  E  S  I  K  A  L  G  Y  F  G  C  L  C  L  V  *  Q  R  S  *  L  L  S  R :   N  E  *  S  L  F  S  H  D  Y  S  T  *  *  *  S  R  C  I  L  V  L  *  T  Y  D  E  E  T   : E  K  K  F  Q  S  Y  W  E  L  C  W  S  G  G  A  A  K  L  S  S  I  N  N  S  S  Y  R  S  Q  T </second_frame>
            <third_frame>   C  C  *  N  S  *  S  K  L  L  V  L  N  F  R  F  L  R  S  F  Q  S  N  K  V  *  S  M  W  R  N  Y  G  A  S  A  D  S  F  Y  Q  :  V  R  P  E  C  A  D  D  V  P  E  T  K  F  R  I  K  :  V  G  K  T  L  S  S  R  R  W  H  A  A  F  T  P  E  G  Y  L  D  I  G  K  I  L  G  R  V  C  R  G  :  G  I  H  P  S  I  R  G  E  V  W  E  F  L  L  G  C  Y  D  S  K  S  T  F  E  E  R  E  Q  L  R  Q  R  R  R :   V  Q  Y  A  A  L  K  E  E  C  R  G  M  F  P  L  I  G  S  G  R  F  I  S  A  P  V  I  T  E  D  G  D  P  I  L  D  P  I  V  L  Q  E  L  N  A  A  K  E  P  T  S  A  G  Q  V   : G  P  S  D  G  F  E  L  V  K  E  H  D  K  K  V  I  Q  W  K  L  S  L  H  Q  I   : G  L  D  V  I  R  T  D  R  T  L  V  F  Y  E  K  Q  E  N  L  S  K  L  W  D  I  L  A  V  Y  A  W  F  D  K  E  V  S  Y  C  Q   : G  M  S  D  L  C  S  P  M  I  I  L  L  D  D  E  A  D  A  F  W  C  F  E  R  M  M  K  R  L  :  R  K  N  F  R  A  T  G  N  S  V  G  V  E  A  Q  L  S  Y  L  A  S  I  T  Q  V  I  D  P  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114716" stop="114672"/>
                    <exon start="114595" stop="114545"/>
                    <exon start="112755" stop="112660"/>
                    <exon start="112431" stop="112328"/>
                    <exon start="111969" stop="111800"/>
                    <exon start="111680" stop="111603"/>
                    <exon start="111384" stop="111262"/>
                    <exon start="110808" stop="110720"/>
                    <exon start="110502" stop="110413"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMWRNYGASADSFYQVRPECADDVPETKFRIKVGKTLSSRRWHAAFTPEGYLDIGKILGRVCRGGIHPSIRGEVWEFLLGCYDSKSTFEEREQLRQRRRVQYAALKEECRGMFPLIGSGRFISAPVITEDGDPILDPIVLQELNAAKEPTSAGQVGPSDGFELVKEHDKKVIQWKLSLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWFDKEVSYCQGMSDLCSPMIILLDDEADAFWCFERMMKRLRKNFRATGNSVGVEAQLSYLASITQVIDPK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="119634" PGL_stop="124637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119634" e_stop="119949"/>
            <exon e_start="120959" e_stop="121141"/>
            <exon e_start="121983" e_stop="122194"/>
            <exon e_start="122745" e_stop="122908"/>
            <exon e_start="123059" e_stop="123220"/>
            <exon e_start="123394" e_stop="123446"/>
            <exon e_start="123766" e_stop="123906"/>
            <exon e_start="124432" e_stop="124614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.955" e_score="0.997"/>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.572" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.021" acc_prob="0.203" e_score="1.000"/>
          <exon-intron don_prob="0.684" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="119634" e_stop="119949" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.955">
            <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120959" e_stop="121141" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="121142" i_stop="121982" i_length="841"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121983" e_stop="122194" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.572" acc_prob="0.994">
            <gDNA_intron_boundary i_start="122195" i_stop="122744" i_length="550"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122745" e_stop="122908" e_length="164"/>
          </exon>
          <intron i_serial="4" don_prob="0.021" acc_prob="0.203">
            <gDNA_intron_boundary i_start="122909" i_stop="123058" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123059" e_stop="123220" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.684" acc_prob="0.998">
            <gDNA_intron_boundary i_start="123221" i_stop="123393" i_length="173"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123394" e_stop="123446" e_length="53"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123447" i_stop="123765" i_length="319"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="123766" e_stop="123906" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="123907" i_stop="124431" i_length="525"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="124432" e_stop="124614" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119634" stop="119949"/>
              <exon start="120959" stop="121141"/>
              <exon start="121983" stop="122194"/>
              <exon start="122745" stop="122908"/>
              <exon start="123059" stop="123220"/>
              <exon start="123394" stop="123446"/>
              <exon start="123766" stop="123906"/>
              <exon start="124432" stop="124614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319608" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTATGGAATAAAGAAGGTTTCTAATTGAGAGAGAGTAGACGATAATGGAGTTGCTGGGAGGAAGAAGAGCAATCAATTGATAGGTTTTGGTGTGAGAAAGATAGAGACGCCACGCTGAAGAGATATATACAGACACGGCAGACGCCATTATTAATTTATATTAGTAGTAATAATCTTTAATACTCCATAAGGACTGACATTTTTGACCCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT : CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAG : GTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAG : GCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAG : ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAG : TTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG : GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAG : GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATTTCA</gDNA_template>
            <first_frame> C  Y  G  I  K  K  V  S  N  *  E  R  V  D  D  N  G  V  A  G  R  K  K  S  N  Q  L  I  G  F  G  V  R  K  I  E  T  P  R  *  R  D  I  Y  R  H  G  R  R  H  Y  *  F  I  L  V  V  I  I  F  N  T  P  *  G  L  T  F  L  T  Q  N  T  T  S  *  S  E  R  T  G  Y  G  H  W  N  D  A  L  L  I  Q  K  T  L  *  Y  F  T  D  N  P  F  S  I   : S  *  Y  I  G  F  S  *  T  *  R  R  I  N  Q  K  L  I  I  K  C  C  G  G  C  K  I  L  R  W  G  Q  F  D  I  V  A  T  C  R  I  W  S  F  P  E  G  S  C  G  T  C  C  F  I  P  P  F  R  F  S   : G  P  Y  C  *  F  *  Q  I  Y  I  P  F  G  *  T  M  G  Q  I  S  P  S  C  S  A  E  W  W  L  F  T  H  N  C  C  I  R  F  I  W  E  K  Y  I  T  A  C  S  S  S  S  G  Y  F  S  N  Y  *  C  H  K  D  F  W  I  K  P  L  Y  *  :  A  N  I  C  R  K  C  S  F  H  C  S  L  H  R  F  Q  P  M  Y  V  E  H  *  S  Y  I  F  S  C  C  F  R  N  S  *  F  E  I  *  C  C  V  N  R  S  S  *  S  F  N  L  G  *  R :   *  V  S  C  *  V  D  I  C  K  A  F  R  A  N  F  G  A  P  R  S  W  K  C  T  Y  C  S  N  W  W  T  R  C  K  E  C  *  E  L  Q  N  D  R  *  A  C  R  E  N  R  C  R  S :   W  C  H  S  C  C  S  G  C  W  I  C  S  Q  R  S  P   : G  W  P  N  W  E  N  C  C  P  R  I  V  Y  G  I  W  C  F  W  C  N  S  T  H  S  R  H  E  R  F  Q  D  H  C  C  C  K  *  R  C  R  C  P  H  I  P   : G  C  *  L  W  T  R  G  *  S  L  R  C  H  S  G  V  V  R  E  T  S  *  E  K  V  E  N  T  Q  V  S  V  I  Q  *  R  *  R  *  C  M  W  W  M  T  F  V  I  Q  E  *  Y  N  T  N  I  I  H  Y  F  </first_frame>
            <second_frame>  V  M  E  *  R  R  F  L  I  E  R  E  *  T  I  M  E  L  L  G  G  R  R  A  I  N  *  *  V  L  V  *  E  R  *  R  R  H  A  E  E  I  Y  T  D  T  A  D  A  I  I  N  L  Y  *  *  *  *  S  L  I  L  H  K  D  *  H  F  *  P  K  I  P  Q  V  E  A  S  E  L  D  M  A  I  G  T  M  L  S  L  F  R  K  L  S  N  T  S  R  I  T  P  F  R  S  :  L  S  T  L  V  L  A  E  H  E  G  G  L  I  K  N  S  S  L  S  A  V  E  A  A  K  S  L  G  G  D  N  S  I  S  L  L  L  A  G  S  G  H  S  L  K  E  A  A  E  H  A  A  S  S  H  P  S  V  S  Q  :  V  L  I  A  D  S  D  K  F  T  Y  P  L  A  E  P  W  A  K  L  V  H  L  V  Q  Q  S  G  G  Y  S  H  I  I  A  A  S  G  S  F  G  K  N  I  L  P  R  A  A  A  L  L  D  I  S  P  I  T  D  V  T  K  I  S  G  S  N  L  F  I  R :   P  I  Y  A  G  N  A  L  S  T  V  R  Y  T  G  S  S  P  C  M  L  S  I  R  A  T  S  F  P  V  A  S  E  T  A  D  L  K  S  N  A  A  S  I  D  Q  V  D  L  S  T  L  D  E   : D  E  S  V  A  K  S  T  Y  V  K  L  S  A  Q  I  S  E  R  P  D  L  G  N  A  R  I  V  V  T  G  G  R  G  V  K  S  A  E  N  F  K  M  I  D  K  L  A  E  K  I  G  A  A   : V  G  A  T  R  A  A  V  D  A  G  F  V  P  N  D  L  Q  :  V  G  Q  T  G  K  I  V  A  P  E  L  Y  M  A  F  G  V  S  G  A  I  Q  H  I  A  G  M  R  D  S  K  I  I  V  A  V  N  K  D  A  D  A  P  I  F  Q  :  V  A  D  Y  G  L  V  G  D  L  F  D  V  I  P  E  L  L  E  K  L  P  E  K  K  *  K  I  H  R  S  L  *  S  N  K  D  E  D  D  V  C  G  G  *  H  L  L  S  R  N  N  I  I  L  I  S  F  I  I  S </second_frame>
            <third_frame>   L  W  N  K  E  G  F  *  L  R  E  S  R  R  *  W  S  C  W  E  E  E  E  Q  S  I  D  R  F  W  C  E  K  D  R  D  A  T  L  K  R  Y  I  Q  T  R  Q  T  P  L  L  I  Y  I  S  S  N  N  L  *  Y  S  I  R  T  D  I  F  D  P  K  Y  H  K  L  K  R  A  N  W  I  W  P  L  E  R  C  S  P  Y  S  E  N  S  L  I  L  H  G  *  P  L  F  D  L :   L  V  H  W  F  *  L  N  M  K  E  D  *  S  K  T  H  H  *  V  L  W  R  L  Q  N  P  *  V  G  T  I  R  Y  R  C  Y  L  P  D  L  V  I  P  *  R  K  L  R  N  M  L  L  H  P  T  L  P  F  L  R :   S  L  L  L  I  L  T  N  L  H  T  L  W  L  N  H  G  P  N  *  S  I  L  F  S  R  V  V  A  I  H  T  *  L  L  H  Q  V  H  L  G  K  I  Y  Y  R  V  Q  Q  L  F  W  I  F  L  Q  L  L  M  S  Q  R  F  L  D  Q  T  S  L  L   : G  Q  Y  M  Q  E  M  L  F  P  L  F  V  T  Q  V  P  A  H  V  C  *  A  L  E  L  H  L  F  L  L  L  Q  K  Q  L  I  *  N  L  M  L  R  Q  *  I  K  L  I  F  Q  P  W  M  K  :  M  S  Q  L  L  S  R  H  M  *  S  F  P  R  K  F  R  S  A  Q  I  L  E  M  H  V  L  *  *  L  V  D  E  V  *  R  V  L  R  T  S  K  *  *  I  S  L  Q  R  K  S  V  P  Q  :  L  V  P  L  V  L  Q  W  M  L  D  L  F  P  T  I  S  R :   L  A  K  L  G  K  L  L  P  Q  N  C  I  W  H  L  V  F  L  V  Q  F  N  T  *  Q  A  *  E  I  P  R  S  L  L  L  *  I  K  M  Q  M  P  P  Y  S  R :   L  L  I  M  D  S  W  V  I  S  S  M  S  F  R  S  C  *  R  N  F  L  R  K  S  R  K  Y  T  G  L  C  D  P  I  K  M  K  M  M  Y  V  V  D  D  I  C  Y  P  G  I  I  *  Y  *  Y  H  S  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119842" stop="119949"/>
                    <exon start="120959" stop="121141"/>
                    <exon start="121983" stop="122194"/>
                    <exon start="122745" stop="122908"/>
                    <exon start="123059" stop="123220"/>
                    <exon start="123394" stop="123446"/>
                    <exon start="123766" stop="123906"/>
                    <exon start="124432" stop="124509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKIPQVEASELDMAIGTMLSLFRKLSNTSRITPFRSLSTLVLAEHEGGLIKNSSLSAVEAAKSLGGDNSISLLLAGSGHSLKEAAEHAASSHPSVSQVLIADSDKFTYPLAEPWAKLVHLVQQSGGYSHIIAASGSFGKNILPRAAALLDISPITDVTKISGSNLFIRPIYAGNALSTVRYTGSSPCMLSIRATSFPVASETADLKSNAASIDQVDLSTLDEDESVAKSTYVKLSAQISERPDLGNARIVVTGGRGVKSAENFKMIDKLAEKIGAAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHIAGMRDSKIIVAVNKDADAPIFQVADYGLVGDLFDVIPELLEKLPEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="122898" e_stop="122908"/>
            <exon e_start="123059" e_stop="123446"/>
            <exon e_start="123766" e_stop="123906"/>
            <exon e_start="124432" e_stop="124637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.021" acc_prob="0.203" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122898" e_stop="122908" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.021" acc_prob="0.203">
            <gDNA_intron_boundary i_start="122909" i_stop="123058" i_length="150"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123059" e_stop="123446" e_length="388"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123447" i_stop="123765" i_length="319"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123766" e_stop="123906" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="123907" i_stop="124431" i_length="525"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="124432" e_stop="124637" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122898" stop="122908"/>
              <exon start="123059" stop="123446"/>
              <exon start="123766" stop="123906"/>
              <exon start="124432" stop="124637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336879" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGGATGAAG : ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG : GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAG : GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATTTCAATTCTCCAACCTTATTCACAGAC</gDNA_template>
            <first_frame> L  G  *  R :   *  V  S  C  *  V  D  I  C  K  A  F  R  A  N  F  G  A  P  R  S  W  K  C  T  Y  C  S  N  W  W  T  R  C  K  E  C  *  E  L  Q  N  D  R  *  A  C  R  E  N  R  C  R  R  F  S  L  S  R  D  F  C  C  I  H  L  V  L  F  S  A  T  S  L  S  F  I  N  L  S  L  T  Y  F  K  F  L  A  I  T  C  I  I  L  I  S  I  C  F  D  L  I  I  K  L  D  Y  L  C  S  A  V  G  A  T  R  A  A  V  D  A  G  F  V  P  N  D  L  Q  :  V  G  Q  T  G  K  I  V  A  P  E  L  Y  M  A  F  G  V  S  G  A  I  Q  H  I  A  G  M  R  D  S  K  I  I  V  A  V  N  K  D  A  D  A  P  I  F  Q  :  V  A  D  Y  G  L  V  G  D  L  F  D  V  I  P  E  L  L  E  K  L  P  E  K  K  *  K  I  H  R  S  L  *  S  N  K  D  E  D  D  V  C  G  G  *  H  L  L  S  R  N  N  I  I  L  I  S  F  I  I  S  I  L  Q  P  Y  S  Q   </first_frame>
            <second_frame>  L  D  E   : D  E  S  V  A  K  S  T  Y  V  K  L  S  A  Q  I  S  E  R  P  D  L  G  N  A  R  I  V  V  T  G  G  R  G  V  K  S  A  E  N  F  K  M  I  D  K  L  A  E  K  I  G  A  A  G  F  P  S  P  V  T  S  A  V  F  T  L  C  F  F  L  L  L  L  Y  P  L  S  I  S  P  *  H  I  S  N  S  *  Q  *  L  A  *  F  *  F  Q  S  A  L  I  *  S  L  N  W  I  T  S  V  L  Q  L  V  P  L  V  L  Q  W  M  L  D  L  F  P  T  I  S  R :   L  A  K  L  G  K  L  L  P  Q  N  C  I  W  H  L  V  F  L  V  Q  F  N  T  *  Q  A  *  E  I  P  R  S  L  L  L  *  I  K  M  Q  M  P  P  Y  S  R :   L  L  I  M  D  S  W  V  I  S  S  M  S  F  R  S  C  *  R  N  F  L  R  K  S  R  K  Y  T  G  L  C  D  P  I  K  M  K  M  M  Y  V  V  D  D  I  C  Y  P  G  I  I  *  Y  *  Y  H  S  L  F  Q  F  S  N  L  I  H  R  </second_frame>
            <third_frame>   W  M  K  :  M  S  Q  L  L  S  R  H  M  *  S  F  P  R  K  F  R  S  A  Q  I  L  E  M  H  V  L  *  *  L  V  D  E  V  *  R  V  L  R  T  S  K  *  *  I  S  L  Q  R  K  S  V  P  Q  V  F  P  L  P  *  L  L  L  Y  S  P  C  A  F  F  C  Y  F  F  I  L  Y  Q  S  L  L  N  I  F  Q  I  L  S  N  N  L  H  N  S  D  F  N  L  L  *  F  D  H  *  T  G  L  P  L  F  C  S  W  C  H  S  C  C  S  G  C  W  I  C  S  Q  R  S  P   : G  W  P  N  W  E  N  C  C  P  R  I  V  Y  G  I  W  C  F  W  C  N  S  T  H  S  R  H  E  R  F  Q  D  H  C  C  C  K  *  R  C  R  C  P  H  I  P   : G  C  *  L  W  T  R  G  *  S  L  R  C  H  S  G  V  V  R  E  T  S  *  E  K  V  E  N  T  Q  V  S  V  I  Q  *  R  *  R  *  C  M  W  W  M  T  F  V  I  Q  E  *  Y  N  T  N  I  I  H  Y  F  N  S  P  T  L  F  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123195" stop="123446"/>
                    <exon start="123766" stop="123906"/>
                    <exon start="124432" stop="124509"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACRENRCRRFSLSRDFCCIHLVLFSATSLSFINLSLTYFKFLAITCIILISICFDLIIKLDYLCSAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHIAGMRDSKIIVAVNKDADAPIFQVADYGLVGDLFDVIPELLEKLPEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="119844" e_stop="119949"/>
            <exon e_start="120959" e_stop="121568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119844" e_stop="119949" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.955">
            <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120959" e_stop="121568" e_length="610"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119844" stop="119949"/>
              <exon start="120959" stop="121568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT : CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTT</gDNA_template>
            <first_frame> Q  N  T  T  S  *  S  E  R  T  G  Y  G  H  W  N  D  A  L  L  I  Q  K  T  L  *  Y  F  T  D  N  P  F  S  I   : S  *  Y  I  G  F  S  *  T  *  R  R  I  N  Q  K  L  I  I  K  C  C  G  G  C  K  I  L  R  W  G  Q  F  D  I  V  A  T  C  R  I  W  S  F  P  E  G  S  C  G  T  C  C  F  I  P  P  F  R  F  S  G  N  S  S  L  D  A  G  L  F  C  F  T  M  F  P  T  E  Y  *  P  Y  A  P  T  G  F  A  I  *  F  A  R  F  S  V  T  S  W  L  G  H  P  *  F  S  V  K  K  S  S  C  I  L  L  T  Y  L  S  D  C  V  K  H  I  Y  N  V  H  F  V  T  E  R  E  *  S  S  E  E  E  K  R  E  D  D  I  A  F  S  L  S  S  C  T  K  I  L  G  N  A  I  F  N  *  V  L  N  F  G  K  Q  A  I  E  Q  N  P  G  T  M  I  G  D  L  V  K  S  I  Q  S  I  P  V  N  S  Y  S  Q  Y  Y  H   </first_frame>
            <second_frame>  K  I  P  Q  V  E  A  S  E  L  D  M  A  I  G  T  M  L  S  L  F  R  K  L  S  N  T  S  R  I  T  P  F  R  S  :  L  S  T  L  V  L  A  E  H  E  G  G  L  I  K  N  S  S  L  S  A  V  E  A  A  K  S  L  G  G  D  N  S  I  S  L  L  L  A  G  S  G  H  S  L  K  E  A  A  E  H  A  A  S  S  H  P  S  V  S  Q  V  T  P  L  W  M  L  D  C  F  V  S  P  C  F  P  R  N  T  N  L  M  L  L  L  V  L  Q  F  S  L  L  A  F  Q  *  H  L  G  *  D  I  P  S  S  V  *  K  R  V  V  V  F  Y  *  H  T  *  V  I  V  *  N  T  F  T  M  F  T  S  L  Q  R  E  N  D  L  P  R  R  R  K  E  R  M  I  L  L  F  L  C  L  L  V  L  K  F  L  E  M  P  F  S  T  E  C  *  T  L  A  S  K  P  *  N  K  I  Q  E  R  *  *  V  I  L  S  R  V  S  K  V  Y  L  L  T  L  T  H  N  I  I  T  </second_frame>
            <third_frame>   K  Y  H  K  L  K  R  A  N  W  I  W  P  L  E  R  C  S  P  Y  S  E  N  S  L  I  L  H  G  *  P  L  F  D  L :   L  V  H  W  F  *  L  N  M  K  E  D  *  S  K  T  H  H  *  V  L  W  R  L  Q  N  P  *  V  G  T  I  R  Y  R  C  Y  L  P  D  L  V  I  P  *  R  K  L  R  N  M  L  L  H  P  T  L  P  F  L  R  *  L  L  F  G  C  W  T  V  L  F  H  H  V  S  H  G  I  L  T  L  C  S  Y  W  F  C  N  L  V  C  S  L  F  S  N  I  L  A  R  T  S  L  V  Q  C  E  K  E  *  L  Y  S  I  D  I  L  K  *  L  C  K  T  H  L  Q  C  S  L  R  Y  R  E  R  M  I  F  R  G  G  E  K  R  G  *  Y  C  F  F  S  V  F  L  Y  *  N  S  W  K  C  H  F  Q  L  S  A  E  L  W  Q  A  S  H  R  T  K  S  R  N  D  D  R  *  S  C  Q  E  Y  P  K  Y  T  C  *  L  L  L  T  I  L  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119845" stop="119949"/>
                    <exon start="120959" stop="121249"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIPQVEASELDMAIGTMLSLFRKLSNTSRITPFRSLSTLVLAEHEGGLIKNSSLSAVEAAKSLGGDNSISLLLAGSGHSLKEAAEHAASSHPSVSQVTPLWMLDCFVSPCFPRNTNLMLLLVLQFSLLAFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="125294" PGL_stop="124781"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125294" e_stop="124885"/>
            <exon e_start="124811" e_stop="124781"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.782" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.581"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="125294" e_stop="124885" e_length="410"/>
          </exon>
          <intron i_serial="1" don_prob="0.782" acc_prob="0.000">
            <gDNA_intron_boundary i_start="124884" i_stop="124812" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.581">
            <gDNA_exon_boundary e_start="124811" e_stop="124781" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125294" stop="124885"/>
              <exon start="124811" stop="124781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343202" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGTTGTGATTCATGCTGTGGAAGCTGGCTTTGGGCCACAAATGACAGCTAAAAAGATAGCAGCATTGGCACAGCAAAGAGCAATGGACACAACTAAGCCGTCACCTTTCTCTGATGCAGCCAAAGAGGCCGGATTTGAGTACCAAGGGGGGAAACTTGATGACATAACTGTAGTTGTTTCTTATGTAACTAACAATGCCAATCCATTGGCAAATTGAGCCACAAACTTTAATGTTTTTGAAGTAGGACTGTGACTAGCAATTCGCCTAGTGATGCCTCCTTGATCCGTCAAGTGTTTTAGTTAATAGATTTACAGTACGGAGGCATGTCTATATGTTGTATACGATGACCTAATTGATACATTGTTCTTGTTGACATTGATGGATACAAAGACACTGTTCTTTGAAA : ATAAAAAAAAAAAATAGTAGAAAAAGAATTT</gDNA_template>
            <first_frame> G  S  C  D  S  C  C  G  S  W  L  W  A  T  N  D  S  *  K  D  S  S  I  G  T  A  K  S  N  G  H  N  *  A  V  T  F  L  *  C  S  Q  R  G  R  I  *  V  P  R  G  E  T  *  *  H  N  C  S  C  F  L  C  N  *  Q  C  Q  S  I  G  K  L  S  H  K  L  *  C  F  *  S  R  T  V  T  S  N  S  P  S  D  A  S  L  I  R  Q  V  F  *  L  I  D  L  Q  Y  G  G  M  S  I  C  C  I  R  *  P  N  *  Y  I  V  L  V  D  I  D  G  Y  K  D  T  V  L  *  K :   *  K  K  K  I  V  E  K  E  F </first_frame>
            <second_frame>  E  V  V  I  H  A  V  E  A  G  F  G  P  Q  M  T  A  K  K  I  A  A  L  A  Q  Q  R  A  M  D  T  T  K  P  S  P  F  S  D  A  A  K  E  A  G  F  E  Y  Q  G  G  K  L  D  D  I  T  V  V  V  S  Y  V  T  N  N  A  N  P  L  A  N  *  A  T  N  F  N  V  F  E  V  G  L  *  L  A  I  R  L  V  M  P  P  *  S  V  K  C  F  S  *  *  I  Y  S  T  E  A  C  L  Y  V  V  Y  D  D  L  I  D  T  L  F  L  L  T  L  M  D  T  K  T  L  F  F  E   : N  K  K  K  K  *  *  K  K  N   </second_frame>
            <third_frame>   K  L  *  F  M  L  W  K  L  A  L  G  H  K  *  Q  L  K  R  *  Q  H  W  H  S  K  E  Q  W  T  Q  L  S  R  H  L  S  L  M  Q  P  K  R  P  D  L  S  T  K  G  G  N  L  M  T  *  L  *  L  F  L  M  *  L  T  M  P  I  H  W  Q  I  E  P  Q  T  L  M  F  L  K  *  D  C  D  *  Q  F  A  *  *  C  L  L  D  P  S  S  V  L  V  N  R  F  T  V  R  R  H  V  Y  M  L  Y  T  M  T  *  L  I  H  C  S  C  *  H  *  W  I  Q  R  H  C  S  L  K  :  I  K  K  K  N  S  R  K  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125293" stop="125075"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVVIHAVEAGFGPQMTAKKIAALAQQRAMDTTKPSPFSDAAKEAGFEYQGGKLDDITVVVSYVTNNANPLAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="127362" PGL_stop="125575"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127362" e_stop="127286"/>
            <exon e_start="126273" e_stop="125575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127362" e_stop="127286" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="127285" i_stop="126274" i_length="1012"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="126273" e_stop="125575" e_length="699"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127362" stop="127286"/>
              <exon start="126273" stop="125575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333036" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGTTCCTCTGTGTTCTTGCACCCAAAAGTAAACAAAACGGAAAAGTTGTCCGCCGTCAACGAAAATATTTTCAG : GCTTTACCTCCTGAACTACTTGCAGCAAGCAGAGTTTCTCTCGTTATTGATTGTTACAGCGGATAATGGCTGTTTGTGGTTCAAGAACTTCTCATATTGGCCATTTTGTTGGTAAGATGGCTGCTAGGCGCCTGCATTATGCATTGGCGGTAAATAATAGTAGCGTCTCTTATAGCAATAGGAGCATTGAGAATGTTAGAAAAGCCAACATTAGTTTGAGAAATAAAGGCCAACCTCACAACTTCATGTTATCTCAATATTTTAAAACTAGTGTTGCAAAGAGGAAGGGACATGAAGGATTTGGATTAGAAGGTTTTCGCGTTTTATCACTTGCACGTTTCTCTTCTGGAACTACTGCTCCCAGCAGCCTGTCTTCTGATAATACTAAGGAAAAGGAACAGACTGCAGATACTGTTGATTCTTCTGAGGGAAAGATACACCTGAAGCTGAATTCGGGATCATTTTATCTGCCTCATCCTGCGAAAGCAAAAACTGGTGGAGAGGATGCTCATTTCATTTATGATCCTGCACAAGCTATAGGTGTAGCTGATGGGGTCGGTGGATGGGCTGATCTTGGTATTGATGCAGGGGAATATGCCCGTGAATTAATGTCTAACTGTATGTCTGTGATACAAGAGGAACCTAAGGATTCCGTAGACCTTATTAGGGTCCTGGAGAAAGCTTACATGAGAACAAAAG</gDNA_template>
            <first_frame> G  S  S  S  V  F  L  H  P  K  V  N  K  T  E  K  L  S  A  V  N  E  N  I  F  R :   L  Y  L  L  N  Y  L  Q  Q  A  E  F  L  S  L  L  I  V  T  A  D  N  G  C  L  W  F  K  N  F  S  Y  W  P  F  C  W  *  D  G  C  *  A  P  A  L  C  I  G  G  K  *  *  *  R  L  L  *  Q  *  E  H  *  E  C  *  K  S  Q  H  *  F  E  K  *  R  P  T  S  Q  L  H  V  I  S  I  F  *  N  *  C  C  K  E  E  G  T  *  R  I  W  I  R  R  F  S  R  F  I  T  C  T  F  L  F  W  N  Y  C  S  Q  Q  P  V  F  *  *  Y  *  G  K  G  T  D  C  R  Y  C  *  F  F  *  G  K  D  T  P  E  A  E  F  G  I  I  L  S  A  S  S  C  E  S  K  N  W  W  R  G  C  S  F  H  L  *  S  C  T  S  Y  R  C  S  *  W  G  R  W  M  G  *  S  W  Y  *  C  R  G  I  C  P  *  I  N  V  *  L  Y  V  C  D  T  R  G  T  *  G  F  R  R  P  Y  *  G  P  G  E  S  L  H  E  N  K   </first_frame>
            <second_frame>  E  V  P  L  C  S  C  T  Q  K  *  T  K  R  K  S  C  P  P  S  T  K  I  F  S   : G  F  T  S  *  T  T  C  S  K  Q  S  F  S  R  Y  *  L  L  Q  R  I  M  A  V  C  G  S  R  T  S  H  I  G  H  F  V  G  K  M  A  A  R  R  L  H  Y  A  L  A  V  N  N  S  S  V  S  Y  S  N  R  S  I  E  N  V  R  K  A  N  I  S  L  R  N  K  G  Q  P  H  N  F  M  L  S  Q  Y  F  K  T  S  V  A  K  R  K  G  H  E  G  F  G  L  E  G  F  R  V  L  S  L  A  R  F  S  S  G  T  T  A  P  S  S  L  S  S  D  N  T  K  E  K  E  Q  T  A  D  T  V  D  S  S  E  G  K  I  H  L  K  L  N  S  G  S  F  Y  L  P  H  P  A  K  A  K  T  G  G  E  D  A  H  F  I  Y  D  P  A  Q  A  I  G  V  A  D  G  V  G  G  W  A  D  L  G  I  D  A  G  E  Y  A  R  E  L  M  S  N  C  M  S  V  I  Q  E  E  P  K  D  S  V  D  L  I  R  V  L  E  K  A  Y  M  R  T  K  </second_frame>
            <third_frame>   K  F  L  C  V  L  A  P  K  S  K  Q  N  G  K  V  V  R  R  Q  R  K  Y  F  Q  :  A  L  P  P  E  L  L  A  A  S  R  V  S  L  V  I  D  C  Y  S  G  *  W  L  F  V  V  Q  E  L  L  I  L  A  I  L  L  V  R  W  L  L  G  A  C  I  M  H  W  R  *  I  I  V  A  S  L  I  A  I  G  A  L  R  M  L  E  K  P  T  L  V  *  E  I  K  A  N  L  T  T  S  C  Y  L  N  I  L  K  L  V  L  Q  R  G  R  D  M  K  D  L  D  *  K  V  F  A  F  Y  H  L  H  V  S  L  L  E  L  L  L  P  A  A  C  L  L  I  I  L  R  K  R  N  R  L  Q  I  L  L  I  L  L  R  E  R  Y  T  *  S  *  I  R  D  H  F  I  C  L  I  L  R  K  Q  K  L  V  E  R  M  L  I  S  F  M  I  L  H  K  L  *  V  *  L  M  G  S  V  D  G  L  I  L  V  L  M  Q  G  N  M  P  V  N  *  C  L  T  V  C  L  *  Y  K  R  N  L  R  I  P  *  T  L  L  G  S  W  R  K  L  T  *  E  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126223" stop="125576"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLQRIMAVCGSRTSHIGHFVGKMAARRLHYALAVNNSSVSYSNRSIENVRKANISLRNKGQPHNFMLSQYFKTSVAKRKGHEGFGLEGFRVLSLARFSSGTTAPSSLSSDNTKEKEQTADTVDSSEGKIHLKLNSGSFYLPHPAKAKTGGEDAHFIYDPAQAIGVADGVGGWADLGIDAGEYARELMSNCMSVIQEEPKDSVDLIRVLEKAYMRTK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="127850" PGL_stop="131755"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127850" e_stop="127971"/>
            <exon e_start="129363" e_stop="129486"/>
            <exon e_start="129701" e_stop="129934"/>
            <exon e_start="130081" e_stop="130371"/>
            <exon e_start="131299" e_stop="131755"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.926" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127850" e_stop="127971" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.945">
            <gDNA_intron_boundary i_start="127972" i_stop="129362" i_length="1391"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="129363" e_stop="129486" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="129487" i_stop="129700" i_length="214"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="129701" e_stop="129934" e_length="234"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="129935" i_stop="130080" i_length="146"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="130081" e_stop="130371" e_length="291"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.926">
            <gDNA_intron_boundary i_start="130372" i_stop="131298" i_length="927"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="131299" e_stop="131755" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127850" stop="127971"/>
              <exon start="129363" stop="129486"/>
              <exon start="129701" stop="129934"/>
              <exon start="130081" stop="130371"/>
              <exon start="131299" stop="131755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGTGTTTTAATAATTGGCTTACAGCTGATGTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAG : GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATG : GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG : GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAG : ATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGGAATGCAACAAGCTCTAAACAACCAATTTCCTGATTTAGAGTTGAGACGCCCTGTTCAATTCAACCCATTCACAAGCGTTTTCGAAACTCTCAAGAAACTTGCTGAACTATATTTCAAGTAGTAAATCCACTTGATATATTACTTGTATAGTGCATAGTTCTTATGACTAGTGGCTGTAACACATTGAACTAAAGTTCAACTATGAATGACATACACTCCAGAAAAATTTGTGTGTTACTATTGGGAAAATGGTAGACATATGTGAATGACATGCTTATATTTGGTATGAGTTTAAAATA</gDNA_template>
            <first_frame> K  S  V  L  I  I  G  L  Q  L  M  *  S  K  N  T  M  V  C  Y  N  L  V  A  Q  Q  S  P  P  I  L  V  Q  S  Q  Y  P  S  K  P  R :   G  L  S  V  K  V  V  S  S  C  C  T  E  C  P  I  F  G  K  V  E  V  K  H  V  I  S  G  L  A  A  S  I  L  F  L  S  Q  S  S  M  :  A  F  A  A  D  L  P  H  Y  N  S  V  F  Q  L  A  N  V  A  D  S  M  P  T  L  P  L  E  K  G  N  D  G  G  K  L  M  M  M  R  G  M  T  A  K  D  F  D  P  I  R  Y  S  G  R  W  F  E  V  A  S  L  K  R  G  F  A  G  Q  G  Q  E  D  C  H  C  T  Q  :  G  I  Y  T  V  D  M  N  A  P  A  I  Q  V  D  T  F  C  V  H  G  G  P  D  G  Y  I  T  G  I  R  G  R  V  Q  C  L  N  E  E  D  K  E  K  D  E  T  D  L  E  R  Q  E  M  I  R  E  K  C  Y  L  R  F  P  T  L  P  F  I  P  K  E  P  Y  D  V  I  A  T  D  Y  D  N  F  A  L  V  S  G  A  K  D  K  S  F  V  Q  :  I  Y  S  R  T  P  N  P  G  P  E  F  I  D  R  Y  K  N  Y  L  A  S  F  G  Y  D  P  S  K  I  N  D  T  P  Q  D  C  E  V  K  T  T  S  Q  L  S  A  M  M  S  M  S  G  M  Q  Q  A  L  N  N  Q  F  P  D  L  E  L  R  R  P  V  Q  F  N  P  F  T  S  V  F  E  T  L  K  K  L  A  E  L  Y  F  K  *  *  I  H  L  I  Y  Y  L  Y  S  A  *  F  L  *  L  V  A  V  T  H  *  T  K  V  Q  L  *  M  T  Y  T  P  E  K  F  V  C  Y  Y  W  E  N  G  R  H  M  *  M  T  C  L  Y  L  V  *  V  *  N  </first_frame>
            <second_frame>  K  V  F  *  *  L  A  Y  S  *  C  E  V  R  T  Q  W  F  A  T  I  W  W  P  N  N  H  L  Q  F  W  F  N  H  N  I  R  Q  N  P   : G  G  C  L  *  K  W  C  L  P  A  A  L  N  V  Q  Y  L  V  R  L  R  L  N  M  S  F  L  V  L  R  H  Q  S  Y  F  S  L  K  V  A  W :   L  L  Q  Q  T  S  L  I  T  T  V  Y  F  N  L  Q  M  S  R  T  A  C  Q  H  F  L  W  R  R  E  M  M  V  E  S  *  *  *  C  E  A  *  Q  R  K  T  L  I  Q  S  G  I  L  E  D  G  S  K  *  L  P  L  N  V  D  L  L  D  K  V  K  K  I  V  I  A  H  R :   A  F  T  L  L  I  *  M  H  L  L  S  K  *  T  H  F  A  F  M  E  D  L  M  A  T  S  Q  A  *  G  E  G  F  N  A  L  M  R  R  I  R  R  K  T  R  L  I  *  K  G  K  K  *  L  G  R  S  V  T  L  G  F  L  H  C  R  S  S  L  R  S  L  M  M  *  L  Q  L  I  M  I  T  S  H  W  F  L  E  L  K  I  K  A  S  F  R :   Y  T  R  G  R  L  I  Q  D  Q  N  L  S  T  G  T  R  T  T  *  Q  V  S  D  M  I  Q  A  K  S  M  T  L  H  K  T  V  R  *  R  L  P  V  S  Y  Q  Q  *  C  P  C  P  E  C  N  K  L  *  T  T  N  F  L  I  *  S  *  D  A  L  F  N  S  T  H  S  Q  A  F  S  K  L  S  R  N  L  L  N  Y  I  S  S  S  K  S  T  *  Y  I  T  C  I  V  H  S  S  Y  D  *  W  L  *  H  I  E  L  K  F  N  Y  E  *  H  T  L  Q  K  N  L  C  V  T  I  G  K  M  V  D  I  C  E  *  H  A  Y  I  W  Y  E  F  K  I </second_frame>
            <third_frame>   K  C  F  N  N  W  L  T  A  D  V  K  *  E  H  N  G  L  L  Q  F  G  G  P  T  I  T  S  N  F  G  S  I  T  I  S  V  K  T  Q  :  G  V  V  C  E  S  G  V  F  L  L  H  *  M  S  N  I  W  *  G  *  G  *  T  C  H  F  W  S  C  G  I  N  P  I  S  L  S  K  *  H   : G  F  C  S  R  P  P  S  L  Q  Q  C  I  S  T  C  K  C  R  G  Q  H  A  N  T  S  F  G  E  G  K  *  W  W  K  A  D  D  D  A  R  H  D  S  E  R  L  *  S  N  Q  V  F  W  K  M  V  R  S  S  F  P  *  T  W  I  C  W  T  R  S  R  R  L  S  L  H  T   : G  H  L  H  C  *  Y  E  C  T  C  Y  P  S  R  H  I  L  R  S  W  R  T  *  W  L  H  H  R  H  K  G  K  G  S  M  P  *  *  G  G  *  G  E  R  R  D  *  S  R  K  A  R  N  D  *  G  E  V  L  P  *  V  S  Y  T  A  V  H  P  *  G  A  L  *  C  N  C  N  *  L  *  *  L  R  T  G  F  W  S  *  R  *  K  L  R  S   : D  I  L  E  D  A  *  S  R  T  R  I  Y  R  Q  V  Q  E  L  L  S  K  F  R  I  *  S  K  Q  N  Q  *  H  S  T  R  L  *  G  K  D  Y  Q  S  A  I  S  N  D  V  H  V  R  N  A  T  S  S  K  Q  P  I  S  *  F  R  V  E  T  P  C  S  I  Q  P  I  H  K  R  F  R  N  S  Q  E  T  C  *  T  I  F  Q  V  V  N  P  L  D  I  L  L  V  *  C  I  V  L  M  T  S  G  C  N  T  L  N  *  S  S  T  M  N  D  I  H  S  R  K  I  C  V  L  L  L  G  K  W  *  T  Y  V  N  D  M  L  I  F  G  M  S  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127886" stop="127971"/>
                    <exon start="129363" stop="129486"/>
                    <exon start="129701" stop="129934"/>
                    <exon start="130081" stop="130371"/>
                    <exon start="131299" stop="131577"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKNTMVCYNLVAQQSPPILVQSQYPSKPRGLSVKVVSSCCTECPIFGKVEVKHVISGLAASILFLSQSSMAFAADLPHYNSVFQLANVADSMPTLPLEKGNDGGKLMMMRGMTAKDFDPIRYSGRWFEVASLKRGFAGQGQEDCHCTQGIYTVDMNAPAIQVDTFCVHGGPDGYITGIRGRVQCLNEEDKEKDETDLERQEMIREKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSFVQIYSRTPNPGPEFIDRYKNYLASFGYDPSKINDTPQDCEVKTTSQLSAMMSMSGMQQALNNQFPDLELRRPVQFNPFTSVFETLKKLAELYFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 50 chains have been computed
$ 
$ memory statistics:
$ 645952 bytes spliced alignments in total
$ 34 spliced alignments have been stored
$ 18998 bytes was the average size of a spliced alignment
$ 38280 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 1472 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 59 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-27 02:51:32
-->
