<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 12:32:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0215O16-A0Mb6/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-FqVF35/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FqVF35/sgn_marker_seqs" ref_id="SGN-M8875" ref_strand="+" ref_description="SGN-M8875 C2_At5g35170 [cosii_markers]">
      <seq>gcaaaatgctgaagcaatattaccagtgtactcagatataatgaataagattgatgggaaccgcggcaaagattcagtatttgcagaaattgattccttattgtcacgtgtgcagaaagaggaacaagatgcaagaaaatcagaagaatcagcaatttccagtactcgagctgatatggcatctttgagcaaggattggagaggaatacctactagactgaataatattcctcactcaagagaaattagggaatatttctacactgatgtgcttcaggctactcaaagagctgtcaatgatgggaaaactcgtttaaagatagaaatcaatatcccggagctgaatccttcaatggatgtttatcgaataggtactctaatggaacttatccgtgtacttgctctttcatttgctgacgatggaaagcgtgtcaaggtttgtgtccaagggtctatgggggaaggtgcacttgcagggatgcctttgcagcttgcaggaagtcgaaagatattagagtacatggattggggtgattatggcgcgttgggaaactttatcaatattggttctataggtggcaaggaggttgaaaaacaagatgacgtgttcattctagtggctccccagaatgctgtcggaaattgcatcatagatgatatgagagctatgactgatgcagccggtaaccgaccgattattctagtcaaccccaaactaaaggatttacctgcttcaagtggtatcatgcaaacaatgggtagagataaaagattggaatatgctgcattgtttgagatatgctatcaattccggctactctactatgcaggaacacaatatcctattatgggggcactcaggatgtcgtacccgtatccttatgagttatacaagagagtcgatgaatcaccggggaaggagaaatacatatccttggcaacatttgcaaagaggccaagtattgatgaaatgaacgatgccttcgaaggaaaatcaagaaatcaagagaaaaaagcagagggattttggggcttcttgagtggtatactataagcatcgatggagaatgcacaaacatcatgatatcttctatgcaacatctacatttgatcatccaaaactgacggtaaatcaatcttctcttcgtttttgaatccttcgaaatgcaatcaagttctggatttgaggatctgattaatgtgttcagtatgaatttagtctcctggcacatatcgatcgtaaagtgtatatacatttcctatatatatctggtgattttggtaagtatttcgacaaaaaggatcgtaacataccttattctatgtgtatatatatatttcttgttcattttctctaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-A0Mb6/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41614" stop="49055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41914" g_stop="41962" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41963" i_stop="42050" i_length="88">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42051" g_stop="42144" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="143" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42145" i_stop="42998" i_length="854">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42999" g_stop="43048" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="193" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43049" i_stop="43128" i_length="80">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43129" g_stop="43254" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="319" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43255" i_stop="44806" i_length="1552">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44807" g_stop="44842" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="355" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44843" i_stop="44909" i_length="67">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44910" g_stop="44990" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="436" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44991" i_stop="45091" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45092" g_stop="45230" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="575" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45231" i_stop="45785" i_length="555">
            <donor d_prob="0.315" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45786" g_stop="45865" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="655" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45866" i_stop="45953" i_length="88">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="45954" g_stop="46019" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="721" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="46020" i_stop="46812" i_length="793">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="46813" g_stop="46842" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="751" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="46843" i_stop="46929" i_length="87">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="46930" g_stop="47039" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="861" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="47040" i_stop="48050" i_length="1011">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="48051" g_stop="48188" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="862" r_stop="999" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="48189" i_stop="48303" i_length="115">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="48304" g_stop="48333" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1000" r_stop="1029" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="48334" i_stop="48426" i_length="93">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="48427" g_stop="48759" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1030" r_stop="1361" r_length="332" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-M8875" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1362</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41914" e_stop="41962"/>
          <exon e_start="42051" e_stop="42144"/>
          <exon e_start="42999" e_stop="43048"/>
          <exon e_start="43129" e_stop="43254"/>
          <exon e_start="44807" e_stop="44842"/>
          <exon e_start="44910" e_stop="44990"/>
          <exon e_start="45092" e_stop="45230"/>
          <exon e_start="45786" e_stop="45865"/>
          <exon e_start="45954" e_stop="46019"/>
          <exon e_start="46813" e_stop="46842"/>
          <exon e_start="46930" e_stop="47039"/>
          <exon e_start="48051" e_stop="48188"/>
          <exon e_start="48304" e_stop="48333"/>
          <exon e_start="48427" e_stop="48759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATGCTGAAGCAATATTACCAGTGTACTCAGATATAATGAATAAGGTAGATTTGGCATTTACTCTTATTATAGTATAATTTTGAAATTCTGTATGTTTTCTAGTGATTTGTACTTATGAGGTGTGGCATACAGATTGATGGGAACCGCGGCAAAGATTCAGTATTTGCAGAAATTGATTCCTTATTGTCACGTGTGCAGAAAGAGGAACAAGATGCAAGAAAATCAGGTGTGAACCTTTTTTTTATAGAAGTATCTCTCTTGAGGTTCTTTGTATTCTATGTAGAGCTATGTTTTAACCAAATTGAAATTCCTGCTGATCTCGGCAGCATATAATCCTATAAGAGATGTAAAGATTGCGTAACACATGATTAACCATATGTCTCAATTATCAATCCCCCGCCTTTTGTTCTGCACCCACCTCAATAATTAAACTATATCTCTATTCTTTTTTCTCATATTTGTCATCTTGTTTCTCTTCATGCTGTGAAGCCTGTTTGACTTGAAAAACATTGGAGTAAACTTAATTAAATTAAGATAGGCTTGTCTGATGTTTGCAGTTCAAAGCAAATGGGAACTTAATTAACATGGTATATTTTGTGAAGCTAATATGGATGAAATCAAGATGATAGAGCTTTTGCAGCTTTTCACTTACACTTTATAGTATTCGGAAATTGTTTAAAGCATTTTCTGAGTGTGATCATAGAAGAAACTAAAATACCCATATATAAAACTTGTATAGACTCCAATGTTTCCTTTTCTCTTTTCTTTTTTCTTCTTTTACAATATGCTAAATATACTTTTTAGAGGAAATGTTGCACTCTTGAATATTTGAACAATCATTTATAGCTTTAGGTAATTACATCCTGAAGCAGTGAAATAAAATTTCCTTCAAGCTCATTTCCTTTTGTTTCCCCTAAAAACCAAATACCGAAATAGATGTTCCATTTAACAATAAAAAAGATTTTTTGCTGGACACCTTTTTGAATTTCTTGTATCAACATGCTGACAAACTAAATTAGCAGTCATCACTTAGCTCAATGACACTTTGGACCCTGAAACTCTACCATATTTTGTTTGCAGAAGAATCAGCAATTTCCAGTACTCGAGCTGATATGGCATCTTTGAGCAAGGTAATCATCTGCTAAATCACGAACACAACTTCCCTTCTTTTTTTGAAGGAAAGTTGACCGTTTTCCTTATATCGTTATAGGATTGGAGAGGAATACCTACTAGACTGAATAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTACTCAAAGAGCTGTCAATGATGGGAAAACTCGTTTAAAGGTATGACTCTGCCCTGATTCGAAGGTAACTCAAATATTCAAAAGTAATTCAGATAAGTTTAACATCGAAGTAGTTTGCGTTGGTAGAACTGTTTTACAAGATAATTTTGATTGATTATCATTTTAATTAAGACACCCCCTTCTATCAATCGAAGGGGAGTCTTGTAGCAATGGTGAAGTTGTCTTTGTGTGACCTATAGGTCACGGGCTCAAGCCATGGAAGCGGCCACTAATGCTTGCATTAGGATAGGATGCCTAAATCACAGTGCTTGGGGTGCGGCCCTTCCCCGGACCCTGCTAAAGCTGGATGCTTTGTGCAGTGTGCTGTCTTTTTTATCCCTTCTTTCAACCATTTTATTAAAGTGCCACGTTTTCCAACCACTTTGACTGAGAAGTCGCCTTTCTTAGTGGAAGTAGATACAAGATATTATATTCATATATATGTGGTATACAGTTTTCTGAATATACCATGATATGCCCCCTTGAGTGAGTTGACGAGTTTCTGAGAAGAAAGCCAGTATGTTTCTTCGTCAATCAATGAAGAAATATAACTTGTTATGATACTTTAAATCTGTTGACACATGAGTTTCACTAGATTATTTTACCCTTGAATTTCATATTCAATGGAATCTGGAGACATCTCTTATCTTGTTTCTAAAAATTTATGCTATTGTGAGAACGAACGACTAAGTATTTCAAAAGACTTACGGATAACATGCGATTACTCAGTGGAAATAGTTCCAATGAATAACTCTTCTTATTTGAAGGAAATATGCCATATTCTGGTGTCCACATAACTCGAAACATGGAAAGGTCACCTTTTCTTAATTTTGAGAAAAGAGTAAGAGAGAACTACCAGCTCATGTTCCCACAAACTAGTTTTATAGATAATAAAAGCATGAAAATAGCTAGCTCAAAAGATGAATCTTGTCCCATTCTATTTAATAATATCCTGTAAACTTATAGTATATGCTCTTCGATATTCTATCTAATCTCATATGTTAAGTGTGTTTCGACAACTGTGCTGGTGTCAGAATATGGTGCATAATTTGTTAGGCTTTTTGGGAATAAAATAAGGAAAAGGAGCCCTTGACCCAGTGGCTGAGCTAGAATTTTATCTAAGGTGTGTCAAAATATTAAGAATCAAAATCGTGCAGAAGCCAAGGAGTGACAATATGTAATTTATATACATAAAAAATATTTTTTATTCTAGCAACATAATGTAATTTTCCGACGAAGGGGTGTCGGCCGACACCCCTTAACTATATGTGGCTCCGCCACTGCCTTGACCCACAGGAGGATTTATTCAATAACATAGTTTGGCTCCTATCATATGACACCTTAGGGCTTTCTATTTGATTGTATCTTAAAAATGTGGTTTAATATTGAAAGATCAAATTGCTATGAAATGAGAAAAACTAAGCTGTTCATTTATTTATGCCAGAGAATTAGTTTTATTCTTTATTAAACCTATAGAAGGAATCCAGGCCTTCCCCTATCTACATTTATCGATTTATCCAAGTTATATTAATACCTTTATCTTGATTTAACAGATAGAAATCAATATCCCGGAGCTGAATCCTTCAATGGTGAGAAAACATTTTCTGATCATATGCCCATAGTTTATTTAGGTTTGACAGTATGTTAAATCCACAGGATGTTTATCGAATAGGTACTCTAATGGAACTTATCCGTGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAGGTATGTGTCACTGATGGTTATTCTTTTCCACTCTTAGTTAATCTAGTATCTTTGAAATAAGGCAAATTATACATATTCATTTCTCCAGATCTCATTTGTAGGTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAGGTATTGTAGAGATTAAAATTGCACTGATGACTTTCACTTCCTATCCAATATCATGTTTTTAGAAGCATACTGCAACTATAAATGGTCTTCTAAGACATAATATACAAATCTATCCGTGTGCGTTCGTGCACAACATTTCTCTTTTTTATGAGATAGGGGCAGAGCCACAGTAGAAGTTTTGTGTTCAATAGAACAACTTTGGCTCAAACGCTGTAGTTGTATTAAGAAATTCAATGCATCCCGAACCCAGTAAGCAATAAGAGGTGTTCTAAACCTAAAATCGTAGATCCGCCTCTGTTGTGAGGGGTTTATTTGAGAATGTAGTTCTAATATAGCTGATAGTAGAAACTTCATAGCTTTATAAATGTTTCTGTTGTGTGGTGACTATTTGTGTATGTTGTGCAAGTATACACATGCTAACATGAATGCTTAACCCTCAATTTTTTCTGAGGTTAGCATTGCGATAAAACACAATATAATCACACTCTTGAATTCGCTTCTTTCACGATTGCTGGTCAACTCCATGTTTACTACAAATTTTAATGTGTTTTTCAGGTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGATGTGATTCACTCTGAACCATTTTCTGTATTTTCCTCATACTGCTCTTATTCAGTTTATTAAATTTTTTCTCTCCTGTTGAATAATGCAGGATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAGGTTTGGATCTTAATACCTCGTTAATGAATGTGACTTCCTTTTTAACTAAAAAACAGCTCATGGCTTACCATGAATCTCAATCGCAGCAGCAAAAGTTGTTTGAATGATAAATTAGTCTCACGTCCCTTCCAATACTTAATATCACCTACCAAAGTGAAGCTTGTGGTTGATGCATATACAACAATGCTCATTTTAAATTTCTTTTTGTAGCTTATCGTAAAATACATTTTGATTCTGGCGGTGTCCAAGAACTTAAATGCAACGTCTCATACCCAAGTCCATCTGTCCATGTAACCTAGAGAGTACTGTTTGACATGTAGATATGCAAATGAGACGAATTCATTAATCTACTGAAAGTGTTTATTCTAGAAATTTTTTAAAATTTGAAAACTGTGCTTAAGCCTTCTAATCTGGATAAGGGTGTTTTACCATCTATGTTACTCTGACTTTTCATAAATGTCAGCGGGTGCATGTCGAATTCTCCAAAAGTAGTGTATTTTTGGAGTATCCGTGTGAGTGCGGCATCGAAAGTAGAGAGTCACACAACTTACTTTACCATTATACACTAAAATATTGATTACGAACTCAAACCATCCATGTATTATCCATTTATTCGTCTTGCATTTATACTGATTTTTCTCTCAGAGAAAACAATATTTTTTAGTTGCACTAGAAAACCCGTTAAATAAATTTTGCTTACACTTCCGGTGTTCATAGCTTGACTCAACTTCTCCTCGATGATGAAATGATCATAAATGGCTTGACTTTGATCTATCACATACTAATTGTGCAGGATTTACCTGCTTCAAGTGGTATCATGCAAGTAAGTATCGTAACCATTGAACCATAATGGCCAACAGTAAAGGGAACTTCTTCCTACGTTCTGATTGATTTTCTCTCTGTCTTCAAGACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATTGTTTGAGATATGCTATCAATTCCGGCTACTCTACTATGCAGGAACACAATATCCTATTATGGGGGCACTCAGGTTAGATTTGTTTCTATGCTATTTGATTGGTTTGTCATAACATGATCATGAAGAAGAAGAGCAACTTAAAATGGCATGAAAATGCTTTCGTCTTTTTTCGGTTTGGTGAGATAAAATGTGGATTCACGGATCACTCCTTTGTCATGACTGATGTCACTTTTTTTCCCTGACTTTTCGAGGTCATGAAATAAGAAATTATGTTATTTTGGTATTCTCAGTGTGTTAATCCATAGAATTTTTAGAATTTGTTCGATCATCCCCAAACTTAGCGGCTTCACCTGAAACCTCCTATAGTGACCAATACCCATGGCTTCGTCATGATTGACATCACTTTTTTGGCGTTTCAGCATCATAAAGAAGGAATTCAGGATTGTTTTGGTGTTGTTGTGTGTGTTTGCCCATGGATCTTTTGGAGTTTGTTCGACTGAATCCGTTCTTCCCCAAACTCAGTGGGTCCATCCAAAACCGCCTGGTGACCAATACTCTCATTGTTTCGCCATGACTAAATTCCATCTTTTTTGGCATTTCGGCATCATGACTCATAAAGATGAGATTTAGGGATTTTCTGGAGTTTTTGATGTGTGTTAGTCCATAGATTCTCCGGAATTTGTTCAATCGACTCCATTTCTTTCCTCAAACTTGGTGGTTCCATCGAAAACCACCTGGTGACCAATACTCTCACTGTTTTGCCATGACCAATGCCTCCTTTTTTAGCATTTCGTCGTTAATGAAAGTAGGAATTCAAGATTTTTTGGAGTTTTTGATGTGTGGTAGTCATAGATTTTCCGTAACTTGTTCGATTGACTGTCTTCTGCCCAAACTTAATGGGTCCATTCAAAACCATCGGATGACCAACAATCATTGTTTCACAATGAGCAATCTCATGCCAGCACAGGATGTCGTACCCGTATCCTTATGATAGATTCTTGTTGTGATGGCCTCTGCAAAAAGGAATGGCTGAATATATCCATTGTCAACATTCACTCTCTTGCTAATTATCTCATGTTACAGGATGTCGTACCCGTATCCTTATGAGTTATACAAGAGAGTCGATGAATCACCGGGGAAGGAGAAATACATATCCTTGGCAACATTTGCAAAGAGGCCAAGTATTGATGAAATGAACGATGCCTTCGAAGGAAAATCAAGGTACACTACAAATCATAAACCTGAACTCTTTATAAACTCCTACACCTGCTAAATCTGTTCATTATACCTCTACATCACTGCACTAAAACAATACTTAACGATTATAACTCTGCAGAAATCAAGAGAAAAAAGCAGAGGGATTTTGGTATGTGATTAACTATCCTCCGTTTTATCTATGTTTTGAGTAGTCTAAGCTGGCTTCGCGTTAATTGCTAGACGTATTTTGACATTCTTTTAGGGGCTTCTTGAGTGGTATACTATAAGCATCGATGGAGAATGCACAAACATCATGATATCTTCTATGCAACATCTACATTTGATCATCCAAAACTGACGGTAAATCAATCTTCTCTTCGTTTTTGAATCCTTCGAAATGCAATCAAGTTCTGGATTTGAGGATCTGATTAATGTGTTCAGTATGAATTTAGTCTCCTGGCACATATCGATCGTAAAGTGTATATACATTTCCTATATATATCTGGTGATTTTGGTAAGTATTTCGACAAAAAGGATCGTAACATACCTTATTCTATGTGTATATATATATTTCTTGTTCATTTTTCTCTATTAT</genome_strand>
        <mrna_strand>GCAAAATGCTGAAGCAATATTACCAGTGTACTCAGATATAATGAATAAG........................................................................................ATTGATGGGAACCGCGGCAAAGATTCAGTATTTGCAGAAATTGATTCCTTATTGTCACGTGTGCAGAAAGAGGAACAAGATGCAAGAAAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATCAGCAATTTCCAGTACTCGAGCTGATATGGCATCTTTGAGCAAG................................................................................GATTGGAGAGGAATACCTACTAGACTGAATAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTACTCAAAGAGCTGTCAATGATGGGAAAACTCGTTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAATCAATATCCCGGAGCTGAATCCTTCAATG...................................................................GATGTTTATCGAATAGGTACTCTAATGGAACTTATCCGTGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAG.....................................................................................................GTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGAT........................................................................................GATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACCTGCTTCAAGTGGTATCATGCAA.......................................................................................ACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATTGTTTGAGATATGCTATCAATTCCGGCTACTCTACTATGCAGGAACACAATATCCTATTATGGGGGCACTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTACCCGTATCCTTATGAGTTATACAAGAGAGTCGATGAATCACCGGGGAAGGAGAAATACATATCCTTGGCAACATTTGCAAAGAGGCCAAGTATTGATGAAATGAACGATGCCTTCGAAGGAAAATCAAG...................................................................................................................AAATCAAGAGAAAAAAGCAGAGGGATTTTG.............................................................................................GGGCTTCTTGAGTGGTATACTATAAGCATCGATGGAGAATGCACAAACATCATGATATCTTCTATGCAACATCTACATTTGATCATCCAAAACTGACGGTAAATCAATCTTCTCTTCGTTTTTGAATCCTTCGAAATGCAATCAAGTTCTGGATTTGAGGATCTGATTAATGTGTTCAGTATGAATTTAGTCTCCTGGCACATATCGATCGTAAAGTGTATATACATTTCCTATATATATCTGGTGATTTTGGTAAGTATTTCGACAAAAAGGATCGTAACATACCTTATTCTATGTGTATATATATATTTCTTGTTCA-TTTTCTCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="41914" PGL_stop="48759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41914" e_stop="41962"/>
            <exon e_start="42051" e_stop="42144"/>
            <exon e_start="42999" e_stop="43048"/>
            <exon e_start="43129" e_stop="43254"/>
            <exon e_start="44807" e_stop="44842"/>
            <exon e_start="44910" e_stop="44990"/>
            <exon e_start="45092" e_stop="45230"/>
            <exon e_start="45786" e_stop="45865"/>
            <exon e_start="45954" e_stop="46019"/>
            <exon e_start="46813" e_stop="46842"/>
            <exon e_start="46930" e_stop="47039"/>
            <exon e_start="48051" e_stop="48188"/>
            <exon e_start="48304" e_stop="48333"/>
            <exon e_start="48427" e_stop="48759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.855" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.315" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.895" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41914" e_stop="41962" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41963" i_stop="42050" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42051" e_stop="42144" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.969">
            <gDNA_intron_boundary i_start="42145" i_stop="42998" i_length="854"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42999" e_stop="43048" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="43049" i_stop="43128" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43129" e_stop="43254" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43255" i_stop="44806" i_length="1552"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44807" e_stop="44842" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.855">
            <gDNA_intron_boundary i_start="44843" i_stop="44909" i_length="67"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44910" e_stop="44990" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="44991" i_stop="45091" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45092" e_stop="45230" e_length="139"/>
          </exon>
          <intron i_serial="7" don_prob="0.315" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45231" i_stop="45785" i_length="555"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="45786" e_stop="45865" e_length="80"/>
          </exon>
          <intron i_serial="8" don_prob="0.941" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45866" i_stop="45953" i_length="88"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="45954" e_stop="46019" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="46020" i_stop="46812" i_length="793"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="46813" e_stop="46842" e_length="30"/>
          </exon>
          <intron i_serial="10" don_prob="0.868" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46843" i_stop="46929" i_length="87"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="46930" e_stop="47039" e_length="110"/>
          </exon>
          <intron i_serial="11" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="47040" i_stop="48050" i_length="1011"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="48051" e_stop="48188" e_length="138"/>
          </exon>
          <intron i_serial="12" don_prob="0.991" acc_prob="0.953">
            <gDNA_intron_boundary i_start="48189" i_stop="48303" i_length="115"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="48304" e_stop="48333" e_length="30"/>
          </exon>
          <intron i_serial="13" don_prob="0.997" acc_prob="0.895">
            <gDNA_intron_boundary i_start="48334" i_stop="48426" i_length="93"/>
          </intron>
          <exon e_serial="14" e_score="0.988">
            <gDNA_exon_boundary e_start="48427" e_stop="48759" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41914" stop="41962"/>
              <exon start="42051" stop="42144"/>
              <exon start="42999" stop="43048"/>
              <exon start="43129" stop="43254"/>
              <exon start="44807" stop="44842"/>
              <exon start="44910" stop="44990"/>
              <exon start="45092" stop="45230"/>
              <exon start="45786" stop="45865"/>
              <exon start="45954" stop="46019"/>
              <exon start="46813" stop="46842"/>
              <exon start="46930" stop="47039"/>
              <exon start="48051" stop="48188"/>
              <exon start="48304" stop="48333"/>
              <exon start="48427" stop="48759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8875" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAAATGCTGAAGCAATATTACCAGTGTACTCAGATATAATGAATAAG : ATTGATGGGAACCGCGGCAAAGATTCAGTATTTGCAGAAATTGATTCCTTATTGTCACGTGTGCAGAAAGAGGAACAAGATGCAAGAAAATCAG : AAGAATCAGCAATTTCCAGTACTCGAGCTGATATGGCATCTTTGAGCAAG : GATTGGAGAGGAATACCTACTAGACTGAATAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTACTCAAAGAGCTGTCAATGATGGGAAAACTCGTTTAAAG : ATAGAAATCAATATCCCGGAGCTGAATCCTTCAATG : GATGTTTATCGAATAGGTACTCTAATGGAACTTATCCGTGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAG : GTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAG : GTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGAT : GATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAG : GATTTACCTGCTTCAAGTGGTATCATGCAA : ACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATTGTTTGAGATATGCTATCAATTCCGGCTACTCTACTATGCAGGAACACAATATCCTATTATGGGGGCACTCAG : GATGTCGTACCCGTATCCTTATGAGTTATACAAGAGAGTCGATGAATCACCGGGGAAGGAGAAATACATATCCTTGGCAACATTTGCAAAGAGGCCAAGTATTGATGAAATGAACGATGCCTTCGAAGGAAAATCAAG : AAATCAAGAGAAAAAAGCAGAGGGATTTTG : GGGCTTCTTGAGTGGTATACTATAAGCATCGATGGAGAATGCACAAACATCATGATATCTTCTATGCAACATCTACATTTGATCATCCAAAACTGACGGTAAATCAATCTTCTCTTCGTTTTTGAATCCTTCGAAATGCAATCAAGTTCTGGATTTGAGGATCTGATTAATGTGTTCAGTATGAATTTAGTCTCCTGGCACATATCGATCGTAAAGTGTATATACATTTCCTATATATATCTGGTGATTTTGGTAAGTATTTCGACAAAAAGGATCGTAACATACCTTATTCTATGTGTATATATATATTTCTTGTTCATTTTTCTCTATTAT</gDNA_template>
            <first_frame> A  K  C  *  S  N  I  T  S  V  L  R  Y  N  E  *   : D  *  W  E  P  R  Q  R  F  S  I  C  R  N  *  F  L  I  V  T  C  A  E  R  G  T  R  C  K  K  I  R :   R  I  S  N  F  Q  Y  S  S  *  Y  G  I  F  E  Q   : G  L  E  R  N  T  Y  *  T  E  *  Y  S  S  L  K  R  N  *  G  I  F  L  H  *  C  A  S  G  Y  S  K  S  C  Q  *  W  E  N  S  F  K   : D  R  N  Q  Y  P  G  A  E  S  F  N   : G  C  L  S  N  R  Y  S  N  G  T  Y  P  C  T  C  S  F  I  C  *  R  W  K  A  C  Q   : G  L  C  P  R  V  Y  G  G  R  C  T  C  R  D  A  F  A  A  C  R  K  S  K  D  I  R  V  H  G  L  G  *  L  W  R  V  G  K  L  Y  Q  Y  W  F  Y  R :   W  Q  G  G  *  K  T  R  *  R  V  H  S  S  G  S  P  E  C  C  R  K  L  H  H  R   : *  Y  E  S  Y  D  *  C  S  R  *  P  T  D  Y  S  S  Q  P  Q  T  K   : G  F  T  C  F  K  W  Y  H  A   : N  N  G  *  R  *  K  I  G  I  C  C  I  V  *  D  M  L  S  I  P  A  T  L  L  C  R  N  T  I  S  Y  Y  G  G  T  Q  :  D  V  V  P  V  S  L  *  V  I  Q  E  S  R  *  I  T  G  E  G  E  I  H  I  L  G  N  I  C  K  E  A  K  Y  *  *  N  E  R  C  L  R  R  K  I  K  :  K  S  R  E  K  S  R  G  I  L  :  G  L  L  E  W  Y  T  I  S  I  D  G  E  C  T  N  I  M  I  S  S  M  Q  H  L  H  L  I  I  Q  N  *  R  *  I  N  L  L  F  V  F  E  S  F  E  M  Q  S  S  S  G  F  E  D  L  I  N  V  F  S  M  N  L  V  S  W  H  I  S  I  V  K  C  I  Y  I  S  Y  I  Y  L  V  I  L  V  S  I  S  T  K  R  I  V  T  Y  L  I  L  C  V  Y  I  Y  F  L  F  I  F  L  Y  Y </first_frame>
            <second_frame>  Q  N  A  E  A  I  L  P  V  Y  S  D  I  M  N  K  :  I  D  G  N  R  G  K  D  S  V  F  A  E  I  D  S  L  L  S  R  V  Q  K  E  E  Q  D  A  R  K  S   : E  E  S  A  I  S  S  T  R  A  D  M  A  S  L  S  K  :  D  W  R  G  I  P  T  R  L  N  N  I  P  H  S  R  E  I  R  E  Y  F  Y  T  D  V  L  Q  A  T  Q  R  A  V  N  D  G  K  T  R  L  K  :  I  E  I  N  I  P  E  L  N  P  S  M  :  D  V  Y  R  I  G  T  L  M  E  L  I  R  V  L  A  L  S  F  A  D  D  G  K  R  V  K  :  V  C  V  Q  G  S  M  G  E  G  A  L  A  G  M  P  L  Q  L  A  G  S  R  K  I  L  E  Y  M  D  W  G  D  Y  G  A  L  G  N  F  I  N  I  G  S  I   : G  G  K  E  V  E  K  Q  D  D  V  F  I  L  V  A  P  Q  N  A  V  G  N  C  I  I  D  :  D  M  R  A  M  T  D  A  A  G  N  R  P  I  I  L  V  N  P  K  L  K  :  D  L  P  A  S  S  G  I  M  Q  :  T  M  G  R  D  K  R  L  E  Y  A  A  L  F  E  I  C  Y  Q  F  R  L  L  Y  Y  A  G  T  Q  Y  P  I  M  G  A  L  R :   M  S  Y  P  Y  P  Y  E  L  Y  K  R  V  D  E  S  P  G  K  E  K  Y  I  S  L  A  T  F  A  K  R  P  S  I  D  E  M  N  D  A  F  E  G  K  S  R :   N  Q  E  K  K  A  E  G  F  W :   G  F  L  S  G  I  L  *  A  S  M  E  N  A  Q  T  S  *  Y  L  L  C  N  I  Y  I  *  S  S  K  T  D  G  K  S  I  F  S  S  F  L  N  P  S  K  C  N  Q  V  L  D  L  R  I  *  L  M  C  S  V  *  I  *  S  P  G  T  Y  R  S  *  S  V  Y  T  F  P  I  Y  I  W  *  F  W  *  V  F  R  Q  K  G  S  *  H  T  L  F  Y  V  Y  I  Y  I  S  C  S  F  F  S  I   </second_frame>
            <third_frame>   K  M  L  K  Q  Y  Y  Q  C  T  Q  I  *  *  I  R :   L  M  G  T  A  A  K  I  Q  Y  L  Q  K  L  I  P  Y  C  H  V  C  R  K  R  N  K  M  Q  E  N  Q  :  K  N  Q  Q  F  P  V  L  E  L  I  W  H  L  *  A  R :   I  G  E  E  Y  L  L  D  *  I  I  F  L  T  Q  E  K  L  G  N  I  S  T  L  M  C  F  R  L  L  K  E  L  S  M  M  G  K  L  V  *  R :   *  K  S  I  S  R  S  *  I  L  Q  W :   M  F  I  E  *  V  L  *  W  N  L  S  V  Y  L  L  F  H  L  L  T  M  E  S  V  S  R :   F  V  S  K  G  L  W  G  K  V  H  L  Q  G  C  L  C  S  L  Q  E  V  E  R  Y  *  S  T  W  I  G  V  I  M  A  R  W  E  T  L  S  I  L  V  L  *  :  V  A  R  R  L  K  N  K  M  T  C  S  F  *  W  L  P  R  M  L  S  E  I  A  S  *  M :   I  *  E  L  *  L  M  Q  P  V  T  D  R  L  F  *  S  T  P  N  *  R :   I  Y  L  L  Q  V  V  S  C  K :   Q  W  V  E  I  K  D  W  N  M  L  H  C  L  R  Y  A  I  N  S  G  Y  S  T  M  Q  E  H  N  I  L  L  W  G  H  S   : G  C  R  T  R  I  L  M  S  Y  T  R  E  S  M  N  H  R  G  R  R  N  T  Y  P  W  Q  H  L  Q  R  G  Q  V  L  M  K  *  T  M  P  S  K  E  N  Q   : E  I  K  R  K  K  Q  R  D  F   : G  A  S  *  V  V  Y  Y  K  H  R  W  R  M  H  K  H  H  D  I  F  Y  A  T  S  T  F  D  H  P  K  L  T  V  N  Q  S  S  L  R  F  *  I  L  R  N  A  I  K  F  W  I  *  G  S  D  *  C  V  Q  Y  E  F  S  L  L  A  H  I  D  R  K  V  Y  I  H  F  L  Y  I  S  G  D  F  G  K  Y  F  D  K  K  D  R  N  I  P  Y  S  M  C  I  Y  I  F  L  V  H  F  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41915" stop="41962"/>
                    <exon start="42051" stop="42144"/>
                    <exon start="42999" stop="43048"/>
                    <exon start="43129" stop="43254"/>
                    <exon start="44807" stop="44842"/>
                    <exon start="44910" stop="44990"/>
                    <exon start="45092" stop="45230"/>
                    <exon start="45786" stop="45865"/>
                    <exon start="45954" stop="46019"/>
                    <exon start="46813" stop="46842"/>
                    <exon start="46930" stop="47039"/>
                    <exon start="48051" stop="48188"/>
                    <exon start="48304" stop="48333"/>
                    <exon start="48427" stop="48451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNAEAILPVYSDIMNKIDGNRGKDSVFAEIDSLLSRVQKEEQDARKSEESAISSTRADMASLSKDWRGIPTRLNNIPHSREIREYFYTDVLQATQRAVNDGKTRLKIEINIPELNPSMDVYRIGTLMELIRVLALSFADDGKRVKVCVQGSMGEGALAGMPLQLAGSRKILEYMDWGDYGALGNFINIGSIGGKEVEKQDDVFILVAPQNAVGNCIIDDMRAMTDAAGNRPIILVNPKLKDLPASSGIMQTMGRDKRLEYAALFEICYQFRLLYYAGTQYPIMGALRMSYPYPYELYKRVDESPGKEKYISLATFAKRPSIDEMNDAFEGKSRNQEKKAEGFWGFLSGIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48529" stop="48759"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INLLFVFESFEMQSSSGFEDLINVFSMNLVSWHISIVKCIYISYIYLVILVSISTKRIVTYLILCVYIYFLFIFLYY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 2920 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2920 bytes was the average size of a spliced alignment
$ 5944 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5944 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 26 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 12:32:05
-->
