<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-09 23:57:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0211M21-WjRq1/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-7MCeT9/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7MCeT9/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328546" ref_strand="+" ref_description="SGN-U328546        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain, PF03006: Uncharacterised protein family (Hly-III / UPF0073) | chr5:6840835-6842860 REVERSE | Aliases: F5O24.160, F5O24_160(evalue: 9e-25, score=110) genbank/nr: Hly-III(evalue: 4e-29, score=130)">
      <seq>aaaaatcatcaagaaaaaaaaaattctcttcttccttttttttctatgatttaatttcatattaattcagatcaagaaaaagattatcggaatatatcgaagatgaagaataagaagaatattgaaagaaataaaagggaaaaataccctttaatttcttatcaagaattaccagaatatatgaaggataatgagtttattttgaattattatagagctaattggcctctcaaacaagcatttttcagtattttcagttggcataatgaaactcttaatgtttggacgcatttaattggatttattctatttgtggtattaaccatagctaatgcagagcatttatctcaaattgctgattttatgactatgtttatccggaattttccaacaagtggagatgcgaatatatctcacaattttaaggtacttttaagtattgttagtagtaacttaatgaacttataagttatttaatatatcgatacaattcagtcgcttaaaagataattacaggtctaatatactcaataactaaaattagttacttaatataaaataagtaagaagtagacccttcggggtggtctagtggtttgagcttgggacttccatgttggaagtttaagttcaaaaccccttgccagcgaaagcaaaaatttacctctcctgcggatttcccttgtcataaaaaaaagagagtaagaaaatacttattcatactgggatcgagtactaactggaaaataaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0211M21-WjRq1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0211M21.1" temp_strand="+" temp_description="C12HBa0211M21.1  AC217247.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0211M21 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="2059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="237" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="287" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="238" i_stop="534" i_length="297">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="535" g_stop="627" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="380" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="628" i_stop="1414" i_length="787">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1415" g_stop="1790" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="755" r_length="375" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0211M21.1" gen_strand="+" ref_id="SGN-U328546" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0211M21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="237"/>
          <exon e_start="535" e_stop="627"/>
          <exon e_start="1415" e_stop="1790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTCATATTAATTCAGATCAAGAAAAAGATTATCGGAATATATCGAAGATGAAGAATAAGAAGAATATTGAAAGAAATAAAAGGGAAAAATACCCTTTAATTTCTTATCAAGAATTACCAGAATATATGAAGGATAATGAGTTTATTTTGAATTATTATAGAGCTAATTGGCCTCTCAAACAAGCATTTTTCAGTATTTTCAGTTGGCATAATGAAACTCTTAATGTTTGGACGTAAGTATCTCATTTTATTTTTATTTTATTTTGAGTTTTATAAATTCGCTACGAAATTCATCGCTCAATAATTAACTTGTAGTCAACAAAAAATAACAATTTGTTGTTAAATAGAATTAACGATGAATTTTGTTGTTTTACAAAATTTGATAGATAACTTGTCTTAATTTATATTATAATTTTTTTGAATGGCCCTTTTTAGAATAGTTGAAATAATTACTTTGTTTACAATTTATTTTGCTAAAATTTTGAATTTACTTTTCTAAATGGGATCTTGCTTGTTTTGTTTTTTTTCAGGCATTTAATTGGATTTATTCTATTTGTGGTATTAACCATAGCTAATGCAGAGCATTTATCTCAAATTGCTGATTTTATGACTATGTTTATCCGGTATGTAACTAATCAATTTAACGTTTTCGTTAGAAAATTATACTGTATATAAGTTGTATACATAATATTGCATATGAATTTTGAACCTTGTGCCTTTGTTAATTAAAAATCTCAAATTTAAGCTTAATAATTAAGTCGTATTTGATAAAAAAACATTTTAATTTATCCACTTAGAAGGACTTTCAATCGCCAATTAAAATAGTTATCAAACCTTAAAAACTGAATGCAATTTCATAAAAAGACTTTATTTGTATTTATAAATTTGAATTAGTCGAGTCTCGAAGCACAACCAAATTTCTTTGGGTTGGACTTTAGGGATTTAAATTTTCTTTTGATGTGGCAAACTTTAATACGTATACAATTAAAATTATACTAAACCAATGTAATAGAGACATACAGATGTGGTCCATTAATATTTGATGGATATTGAAATGTTAGGTTAAAAAGATACTTTATCAAACTCCCAACTACCATCTTTAAATGTTTGCACATTTATTTCTGTTGATATTCTTTTAGTGATATTTTTTTTTGATGTACGAAATATTTTACGTTAATAATATGGTATAATGTTTAGTGATTATTTTCACTATTTGAGAACTCGTAACCTATTAGATTACATAGAAATAATATAAATAACGTCTTAATTTTCTAAAACATCAAATAATCAATAAATGTGCAAATTTTCATTTAAACCTAGAATTTAAATTTGATTTTCATTTATTATAATTATTATTAATTTTCATAGATTGTCTAAGAAACAAATTTTGTGTTCTCGTTATTTTTACAGGAATTTTCCAACAAGTGGAGATGCGAATATATCTCACAATTTTAAGGTACTTTTAAGTATTGTTAGTAGTAACTTAATGAACTTATAAGTTATTTAATATATCGATACAATTCAGTCGCTTAAAAGATAATTACAGGTCTAATATACTCAATAACTAAAATTAGTTACTTAATATAAAATAAGTAAGAAGTAGACCCTTCGGGGTGGTCTAGTGGTTTGAGCTTGGGACTTCCATGTTGGAGGTTTAAGTTCAAAACCCCTTGCCAGCGAAAGCAAAAATTTACCTCTCCTGCGGATTTCCCTTGTCATAAAAAAAAGAGAGTAAGAAATAACTTATTCATACT--GATCGAGTTACTAAACTGAAAAATAAAATAAA</genome_strand>
        <mrna_strand>TTAATTTCATATTAATTCAGATCAAGAAAAAGATTATCGGAATATATCGAAGATGAAGAATAAGAAGAATATTGAAAGAAATAAAAGGGAAAAATACCCTTTAATTTCTTATCAAGAATTACCAGAATATATGAAGGATAATGAGTTTATTTTGAATTATTATAGAGCTAATTGGCCTCTCAAACAAGCATTTTTCAGTATTTTCAGTTGGCATAATGAAACTCTTAATGTTTGGAC.........................................................................................................................................................................................................................................................................................................GCATTTAATTGGATTTATTCTATTTGTGGTATTAACCATAGCTAATGCAGAGCATTTATCTCAAATTGCTGATTTTATGACTATGTTTATCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTCCAACAAGTGGAGATGCGAATATATCTCACAATTTTAAGGTACTTTTAAGTATTGTTAGTAGTAACTTAATGAACTTATAAGTTATTTAATATATCGATACAATTCAGTCGCTTAAAAGATAATTACAGGTCTAATATACTCAATAACTAAAATTAGTTACTTAATATAAAATAAGTAAGAAGTAGACCCTTCGGGGTGGTCTAGTGGTTTGAGCTTGGGACTTCCATGTTGGAAGTTTAAGTTCAAAACCCCTTGCCAGCGAAAGCAAAAATTTACCTCTCCTGCGGATTTCCCTTGTCATAAAAAAAAGAGAGTAAGAAAATACTTATTCATACTGGGATCGAG-TACT-AACTGGAAAAT-AAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7MCeT9/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313881" ref_strand="+" ref_description="SGN-U313881        Tomato 200607 #1 [58 ESTs aligned] arabidopsis/peptide: | Symbol: None | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, similar to proline-rich cell wall protein (Medicago sativa) GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family | chr2:4317494-4319185 REVERSE | Aliases: F15K19.1, F15K19_1(evalue: 1e-36, score=150) genbank/nr: gi|48375046|gb|AAT42190.1| putative proline-rich protein [Nicotiana tabacum] (evalue: 8e-39, score=164)">
      <seq>ttttctatctatataacaccacaatctttgtaccaaattatttaaccacaaaaaatggagttctctaagataacttcacttcttttcatttctatgcttttcctttcttcattcactcccattcttggatgtggctattgtggtaaaccttctcacaagcccaaaaagcccaaagttcccactcccattgtcaaaccccctgtcgatttgccccctatcggaattccaccaatcgtgaaaccacctgttaatttgccccctatcggaattccaccgatcgtaaaaccaccagtcaaattgccacctatcggaattccaccaatcgtaaaaccgcccgtcatattgccacctgtcggaattccaccaatcgtaaaaccacctgtcaaattgccacctgtcggaattccaccaatcgtaaaaccacctgttgatttgccacctgttgggattccaccggtcacagttccaccaattgtaaaacctccagttgatttgccacctattggaattccaccagtcacagttccaccagtaattaaaccatcacctaaagggaaaaaaccttgtccaccaacaacaaaggcaacatgcccaattgacacattgaaacttggggcttgtgtggatcttttaggtgggcttgttcatattggccttggtgatccagctgttaatgaatgttgtccaatacttagtgggcttgttgaacttgaagctgctgcttgcctttgcacaacacttaaagtcaaattacttaacctcaaaatctatgtacctctagcacttcaactccttgttacttgtggaaagagtccaccacctggctacacttgttccatctaggtttccaatctgaaatttgaagaaattgcatggattgccatgaaaggatgtccaatttatgatttatttaatttctctccaccccaccccacccctcaaaattgtattttatgtattgttttattttggctttgtggaattgttatttaatggaattattattattattatcattattactattattattatttcagtgtatcgtttgaatgtcatgtttcaatgaattgggaaaaaaaaaaacaagtatttttttcaaaaaaaaaaaaaaaaaaaaaaaaaaaagtatttttttcaatgttttagtggtcttatttgaaaattttaattttgtttaattttaaaaaaaaaaaaaaaaaaactcgagacctgcagcccggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0211M21-WjRq1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0211M21.1" temp_strand="+" temp_description="C12HBa0211M21.1  AC217247.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0211M21 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="15139" stop="27919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15439" g_stop="16281" g_length="843"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="843" r_length="843" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16282" i_stop="16872" i_length="591">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16873" g_stop="17129" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="844" r_stop="1101" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17130" i_stop="17644" i_length="515">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17645" g_stop="17658" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1102" r_stop="1115" r_length="14" r_score="0.714"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17659" i_stop="17727" i_length="69">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17728" g_stop="17808" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1116" r_stop="1196" r_length="81" r_score="0.617"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17809" i_stop="18289" i_length="481">
            <donor d_prob="0.000" d_score="0.60"/>
            <acceptor a_prob="0.843" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18290" g_stop="18318" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1197" r_stop="1226" r_length="30" r_score="0.448"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0211M21.1" gen_strand="+" ref_id="SGN-U313881" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>1224</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0211M21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15439" e_stop="16281"/>
          <exon e_start="16873" e_stop="17129"/>
          <exon e_start="17645" e_stop="17658"/>
          <exon e_start="17728" e_stop="17808"/>
          <exon e_start="18290" e_stop="18318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTATCTATATAACACCACAATCTTTGTACCAAATTATTTAACCACAAAAAATGGAGTTCTCTAAGATAACTTCACTTCTTTTCATTTCTATGCTTTTCCTTTCTTCATTCACTCCCATTCTTGGATGTGGCTATTGTGGTAAACCTTCTCACAAGCCCAAAAAGCCCAAAGTTCCCACTCCCATTGTCAAACCCCCTGTCGATTTGCCCCCTATCGGAATTCCACCAATCGTGAAACCACCTGTTAATTTGCCCCCTATCGGAATTCCACCGATCGTAAAACCACCAGTCAAATTGCCACCTATCGGAATTCCACCAATCGTAAAACCGCCCGTCATATTGCCACCTGTCGGAATTCCACCAATCGTAAAACCACCTGTCAAATTGCCACCTGTCGGAATTCCACCAATCGTAAAACCACCTGTTGATTTGCCACCTGTTGGGATTCCACCGGTCACAGTTCCACCAATTGTAAAACCTCCAGTTGATTTGCCACCTATTGGAATTCCACCAGTCACAGTTCCACCAGTAATTAAACCATCACCTAAAGGGAAAAAACCTTGTCCACCAACAACAAAGGCAACATGCCCAATTGACACATTGAAACTTGGGGCTTGTGTGGATCTTTTAGGTGGGCTTGTTCATATTGGCCTTGGTGATCCAGCTGTTAATGAATGTTGTCCAATACTTAGTGGGCTTGTTGAACTTGAAGCTGCTGCTTGCCTTTGCACAACACTTAAAGTCAAATTACTTAACCTCAAAATCTATGTACCTCTAGCACTTCAACTCCTTGTTACTTGTGGAAAGAGTCCACCACCTGGCTACACTTGTTCCATCTAGGTAATTATAACTTTTCCTCCTCTATTTTTTCACTCGGTATCTGGTACTCGCTTTGCTACCCAACCAATGATCGATAAAGCCTCAAAAAAACGAAGGGTGCTTAGTTATTAAACACCCGTCGTACTACTGTTTAAACATGCTTAGTAAAATTTATGATTTTCACCATCTGACCTGACTAATTTAAATTAGAGGTGAGGTAACGCGACTTCATTTTTAGTGTCGAATATGAAGTCTATAGTTACTTAGGTCCCCATCTTTATTGGTTATTAAGTAAATTTATGTATAGATATTAATTGATAACCTGATAAAAATGATATATATAATTAGTTACTTGTTATTACATATTAACAAATATAGATAATATAGAAATATATTAAACCTGATTTTACCTTGAATTTTAAATCTAAACTTGCGTTGTTATTCATTTGGTCTCTCAGAAAGGGAAAAAAAAGAATAAGATACGAAATTTGCTGCTAATCTATCGCGAAATGAAACATATATTTTTTAATAATTCGTTAGTAACTAGGATTAGCTACGTATTTTTATTGTTAATTAAACTTATTATTAATTTAAATTCTGATTAAATTGCAGGTTTCCAATCTGAAATTTGAAGAAATTGCATGGATTGCCATGAAAGGATGTCCAATTTATGATTTATTTAATTTCTCTCCACCCCACCCCACCCCTCAAAATTGTATTTTATGTATTGTTTTATTTTGGCTTTGTGGAATTGTTATTTAATGGAATTATTATTATTATTATCATTATTACTATTATTATTATTTCAGTGTATCGTTTGAATGTCATGTTTCAATGAATTGGG-AAAAAAAAAACAAGTATTTTTTTCAATGTTTTAGTGGTCTTATTTGAAAATTTTAATTTTGTTTAATTTTAAAAGTTTATTGTATTAATCATTGGTTTGGTTTGTATTTTTAGGGAAATTATATGGACAAATTGTTCATAGAGTTGTTTATGAGTCATCTACCCCGTATCGATCTACATAAACCTAAACAAATCTCATCTTGTTCCCGTCCTGTTGCCATTTCTACTGATGACACAAAATTTAATTGATTATTATTGTACAATTTTTTATTTTTTATTTTATTTAAGTCAAATACACGTAAAATAACAAAATCATCTTTTTTAAGAACTGATATGAAATTTAGGGCAACTATATGGTCTTATTGTTTATAAAGTTGCTAAAAATATTTTGACTCATCCAAGCCTAAACTCATCTTGCTCCGGAAAAAATTTTAATGTATTTTTTATTTATTTTAATAAAAGAATTAACTTTAAATTAAGTTAAGGTGTCGAGAAGTTATAATATTAAAGGATAAAATATGAATGCCAAGATTAATTTTTAAAAAAAAAGTATCAATATTCTTTGGGAATAAATTAAAAGAAAAACATATCGCATAAAATGAGATATTTTTTATTTATTTTTTTAAAAAAAAAGATATTAATGATTTGAAAATCGTAACTTCATTATAACAAACTTGGATTTTTTTTTAAAAAAAAAAAAGATAAATTGGACCATAACATTTTGAAGATATTATTGACTGAACCAAACAATATAGTCCATATAATATTTCCAAATACTCGAATAAGGAATCACTAAGTAAAACTGTAGAAACCTTGAGTATCGAATATTTATATTGAGGTCTGATGAGTAAAATTATAGAAATCTTGAGTATCGAATATTTATATTGAAGTCTGATGAAATTCATATTTATGGTACGAAATTTGATATTAGGATAAAGTTCTCACAACAAAAGCAATTTTATACTCGAAACTCAAATCTATGATCATTTAATTAATAATGAAGAAGTATTTATCATTCTGCTTTTAATCGTTATTAGTTTGATGAGCACTTCCAGTTTCCATATCATGTCACTTCATATTGCAATTGACAAGAATGTTAACTTTTATCTTGTTTAAATCCTAAAAGAGTTCAACTTTTGTAGACATTATAAAAGAAAATTTACTAAAATTATTGATACGATACTAGTATCAATGGTTGATTCC-ACAGCCTCGAGC</genome_strand>
        <mrna_strand>TTTTCTATCTATATAACACCACAATCTTTGTACCAAATTATTTAACCACAAAAAATGGAGTTCTCTAAGATAACTTCACTTCTTTTCATTTCTATGCTTTTCCTTTCTTCATTCACTCCCATTCTTGGATGTGGCTATTGTGGTAAACCTTCTCACAAGCCCAAAAAGCCCAAAGTTCCCACTCCCATTGTCAAACCCCCTGTCGATTTGCCCCCTATCGGAATTCCACCAATCGTGAAACCACCTGTTAATTTGCCCCCTATCGGAATTCCACCGATCGTAAAACCACCAGTCAAATTGCCACCTATCGGAATTCCACCAATCGTAAAACCGCCCGTCATATTGCCACCTGTCGGAATTCCACCAATCGTAAAACCACCTGTCAAATTGCCACCTGTCGGAATTCCACCAATCGTAAAACCACCTGTTGATTTGCCACCTGTTGGGATTCCACCGGTCACAGTTCCACCAATTGTAAAACCTCCAGTTGATTTGCCACCTATTGGAATTCCACCAGTCACAGTTCCACCAGTAATTAAACCATCACCTAAAGGGAAAAAACCTTGTCCACCAACAACAAAGGCAACATGCCCAATTGACACATTGAAACTTGGGGCTTGTGTGGATCTTTTAGGTGGGCTTGTTCATATTGGCCTTGGTGATCCAGCTGTTAATGAATGTTGTCCAATACTTAGTGGGCTTGTTGAACTTGAAGCTGCTGCTTGCCTTTGCACAACACTTAAAGTCAAATTACTTAACCTCAAAATCTATGTACCTCTAGCACTTCAACTCCTTGTTACTTGTGGAAAGAGTCCACCACCTGGCTACACTTGTTCCATCTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAATCTGAAATTTGAAGAAATTGCATGGATTGCCATGAAAGGATGTCCAATTTATGATTTATTTAATTTCTCTCCACCCCACCCCACCCCTCAAAATTGTATTTTATGTATTGTTTTATTTTGGCTTTGTGGAATTGTTATTTAATGGAATTATTATTATTATTATCATTATTACTATTATTATTATTTCAGTGTATCGTTTGAATGTCATGTTTCAATGAATTGGGAAAAAAAAAAACAAGTATTTTTTTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA.....................................................................AAAAAAAAAAAAAGTATTTTTTTCAATGTTTTAGTGGTCTTATTTGAAAATTTTAATTTTGTTTAATTTTAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAACTCGAGACCTGCAGCCCGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7MCeT9/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334649" ref_strand="-" ref_description="SGN-U334649        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, similar to proline-rich cell wall protein (Medicago sativa) GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family | chr2:4317494-4319185 REVERSE | Aliases: F15K19.1, F15K19_1(evalue: 2e-28, score=116) genbank/nr: gi|48375046|gb|AAT42190.1| putative proline-rich protein [Nicotiana tabacum] (evalue: 2e-30, score=130)">
      <seq>gtaatttgactttaagtgttgtgcaaaggcaagcagcagcttcaagttcatcaagcccactaagtattggacaacattcattaacagctggatcaccaaggccaatatgaacaagcccacctaaaagatccacacaagccccaagtttcaatgtgtcaattgggcatgttgcctttgttgttggtggacaaggttttttccctttaggtgatggtttaattactggtggaactgtgactggtggaattccaataggtggcaaatcaactggaggttttacaattggtggaactgtgaccggtggaattccgatagggggcaaatcgacagggggtttgacaatgggagtgggaactttgggctttttgggcttgtgagaaggtttaccacaatagccgcatccaagaatgggagtgaatgcacaaaggaaaagcatagaaatgaaacgaagtgaagttatcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0211M21-WjRq1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0211M21.1" temp_strand="-" temp_description="C12HBa0211M21.1  AC217247.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0211M21 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="16492" stop="15201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16192" g_stop="15893" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15892" i_stop="15668" i_length="225">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15667" g_stop="15500" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="468" r_length="168" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0211M21.1" gen_strand="-" ref_id="SGN-U334649" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0211M21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334649" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16192" e_stop="15893"/>
          <exon e_start="15667" e_stop="15500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTTGACTTTAAGTGTTGTGCAAAGGCAAGCAGCAGCTTCAAGTTCAACAAGCCCACTAAGTATTGGACAACATTCATTAACAGCTGGATCACCAAGGCCAATATGAACAAGCCCACCTAAAAGATCCACACAAGCCCCAAGTTTCAATGTGTCAATTGGGCATGTTGCCTTTGTTGTTGGTGGACAAGGTTTTTTCCCTTTAGGTGATGGTTTAATTACTGGTGGAACTGTGACTGGTGGAATTCCAATAGGTGGCAAATCAACTGGAGGTTTTACAATTGGTGGAACTGTGACCGGTGGAATCCCAACAGGTGGCAAATCAACAGGTGGTTTTACGATTGGTGGAATTCCGACAGGTGGCAATTTGACAGGTGGTTTTACGATTGGTGGAATTCCGACAGGTGGCAATATGACGGGCGGTTTTACGATTGGTGGAATTCCGATAGGTGGCAATTTGACTGGTGGTTTTACGATCGGTGGAATTCCGATAGGGGGCAAATTAACAGGTGGTTTCACGATTGGTGGAATTCCGATAGGGGGCAAATCGACAGGGGGTTTGACAATGGGAGTGGGAACTTTGGGCTTTTTGGGCTTGTGAGAAGGTTTACCACAATAGCCACATCCAAGAATGGGAGTGAATGAAGAAAGGAAAAGCATAGAAATGAAAAGAAGTGAAGTTATCTTAGAGA</genome_strand>
        <mrna_strand>GTAATTTGACTTTAAGTGTTGTGCAAAGGCAAGCAGCAGCTTCAAGTTCATCAAGCCCACTAAGTATTGGACAACATTCATTAACAGCTGGATCACCAAGGCCAATATGAACAAGCCCACCTAAAAGATCCACACAAGCCCCAAGTTTCAATGTGTCAATTGGGCATGTTGCCTTTGTTGTTGGTGGACAAGGTTTTTTCCCTTTAGGTGATGGTTTAATTACTGGTGGAACTGTGACTGGTGGAATTCCAATAGGTGGCAAATCAACTGGAGGTTTTACAATTGGTGGAACTGTGACCG.................................................................................................................................................................................................................................GTGGAATTCCGATAGGGGGCAAATCGACAGGGGGTTTGACAATGGGAGTGGGAACTTTGGGCTTTTTGGGCTTGTGAGAAGGTTTACCACAATAGCCGCATCCAAGAATGGGAGTGAATGCACAAAGGAAAAGCATAGAAATGAAACGAAGTGAAGTTATCCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7MCeT9/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334646" ref_strand="-" ref_description="SGN-U334646        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, similar to proline-rich cell wall protein (Medicago sativa) GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family | chr2:4317494-4319185 REVERSE | Aliases: F15K19.1, F15K19_1(evalue: 6e-20, score=94.7) genbank/nr: gi|48375046|gb|AAT42190.1| putative proline-rich protein [Nicotiana tabacum] (evalue: 5e-21, score=104)">
      <seq>tcaactccatgttacttgtggaaaaagtcccccccctggctacacttgttccatctaggtttcccatctgaaatttgaaaaaaatgcatggattgccatgaaaggatgtcccaattatgatttatttaatttctttccaccccaccccacccctcaaaaatggattttatggattgttttaatttggctttgtggaattgttatttaatggaattattattattattatcattattactattattattatttcagtggatcgtttgaatgtcatgtttcaatgaattggaaaaaaaaaaaacaagtatttttttccaaaaaaccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0211M21-WjRq1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0211M21.1" temp_strand="+" temp_description="C12HBa0211M21.1  AC217247.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0211M21 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="15924" stop="27918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16224" g_stop="16281" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16282" i_stop="16872" i_length="591">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16873" g_stop="17131" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="318" r_length="260" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17132" i_stop="18605" i_length="1474">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.517" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18606" g_stop="18631" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="344" r_length="26" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0211M21.1" gen_strand="+" ref_id="SGN-U334646" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0211M21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334646" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16224" e_stop="16281"/>
          <exon e_start="16873" e_stop="17131"/>
          <exon e_start="18606" e_stop="18631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCCTTGTTACTTGTGGAAAGAGTCCACCACCTGGCTACACTTGTTCCATCTAGGTAATTATAACTTTTCCTCCTCTATTTTTTCACTCGGTATCTGGTACTCGCTTTGCTACCCAACCAATGATCGATAAAGCCTCAAAAAAACGAAGGGTGCTTAGTTATTAAACACCCGTCGTACTACTGTTTAAACATGCTTAGTAAAATTTATGATTTTCACCATCTGACCTGACTAATTTAAATTAGAGGTGAGGTAACGCGACTTCATTTTTAGTGTCGAATATGAAGTCTATAGTTACTTAGGTCCCCATCTTTATTGGTTATTAAGTAAATTTATGTATAGATATTAATTGATAACCTGATAAAAATGATATATATAATTAGTTACTTGTTATTACATATTAACAAATATAGATAATATAGAAATATATTAAACCTGATTTTACCTTGAATTTTAAATCTAAACTTGCGTTGTTATTCATTTGGTCTCTCAGAAAGGGAAAAAAAAGAATAAGATACGAAATTTGCTGCTAATCTATCGCGAAATGAAACATATATTTTTTAATAATTCGTTAGTAACTAGGATTAGCTACGTATTTTTATTGTTAATTAAACTTATTATTAATTTAAATTCTGATTAAATTGCAGGTTTCCAATCTGAAATTTGAAGAAATTGCATGGATTGCCATGAAAGGATGTCCAATTTATGATTTATTTAATTTCTCTCCACCCCACCCCACCCCTCAAAATTGTATTTTATGTATTGTTTTATTTTGGCTTTGTGGAATTGTTATTTAATGGAATTATTATTATTATTATCATTATTACTATTATTATTATTTCAGTGTATCGTTTGAATGTCATGTTTCAATGAATTGG-GAAAAAAAAAACAAGTATTTTTTTCAATGTTTTAGTGGTCTTATTTGAAAATTTTAATTTTGTTTAATTTTAAAAGTTTATTGTATTAATCATTGGTTTGGTTTGTATTTTTAGGGAAATTATATGGACAAATTGTTCATAGAGTTGTTTATGAGTCATCTACCCCGTATCGATCTACATAAACCTAAACAAATCTCATCTTGTTCCCGTCCTGTTGCCATTTCTACTGATGACACAAAATTTAATTGATTATTATTGTACAATTTTTTATTTTTTATTTTATTTAAGTCAAATACACGTAAAATAACAAAATCATCTTTTTTAAGAACTGATATGAAATTTAGGGCAACTATATGGTCTTATTGTTTATAAAGTTGCTAAAAATATTTTGACTCATCCAAGCCTAAACTCATCTTGCTCCGGAAAAAATTTTAATGTATTTTTTATTTATTTTAATAAAAGAATTAACTTTAAATTAAGTTAAGGTGTCGAGAAGTTATAATATTAAAGGATAAAATATGAATGCCAAGATTAATTTTTAAAAAAAAAGTATCAATATTCTTTGGGAATAAATTAAAAGAAAAACATATCGCATAAAATGAGATATTTTTTATTTATTTTTTTAAAAAAAAAGATATTAATGATTTGAAAATCGTAACTTCATTATAACAAACTTGGATTTTTTTTTAAAAAAAAAAAAGATAAATTGGACCATAACATTTTGAAGATATTATTGACTGAACCAAACAATATAGTCCATATAATATTTCCAAATACTCGAATAAGGAATCACTAAGTAAAACTGTAGAAACCTTGAGTATCGAATATTTATATTGAGGTCTGATGAGTAAAATTATAGAAATCTTGAGTATCGAATATTTATATTGAAGTCTGATGAAATTCATATTTATGGTACGAAATTTGATATTAGGATAAAGTTCTCACAACAAAAGCAATTTTATACTCGAAACTCAAATCTATGATCATTTAATTAATAATGAAGAAGTATTTATCATTCTGCTTTTAATCGTTATTAGTTTGATGAGCACTTCCAGTTTCCATATCATGTCACTTCATATTGCAATTGACAAGAATGTTAACTTTTATCTTGTTTAAATCCTAAAAGAGTTCAACTTTTGTAGACATTATAAAAGAAAATTTACTAAAATTATTGATACGATACTAGTATCAATGGTTGATTCCACAGCCTCGAGCCTCAATGACCCAAGCACAAAACTAAAATGACCCTAGATGGGAAAATATTAACAGCATGTTATCATATCGCAAAAGTAAAAATTCCTATGTTGAACCCAGACATGTTTTGAATTGAGGCATAGTTATCGTTAAAAAACATAACATAAAAAATGCAGCTAAAATAACAATTTTATACCAAGAAAATAAACTCTATAATGCAAGGCAATATAGAACATAGATAGGCAATACAACTGTATAAACATATACTCATATCATGCACCAGATTAAAACTGCTTTCATGCATTCAGACATCAACGAAAAAAGACATCGAAAA</genome_strand>
        <mrna_strand>TCAACTCCATGTTACTTGTGGAAAAAGTCCCCCCCCTGGCTACACTTGTTCCATCTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCCATCTGAAATTTGAAAAAAATGCATGGATTGCCATGAAAGGATGTCCCAATTATGATTTATTTAATTTCTTTCCACCCCACCCCACCCCTCAAAAATGGATTTTATGGATTGTTTTAATTTGGCTTTGTGGAATTGTTATTTAATGGAATTATTATTATTATTATCATTATTACTATTATTATTATTTCAGTGGATCGTTTGAATGTCATGTTTCAATGAATTGGAAAAAAAAAAAACAAGTATTTTTTTCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7MCeT9/lycopersicum_combined_unigene_seqs" ref_id="SGN-U334648" ref_strand="+" ref_description="SGN-U334648        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gcacgagattgaaacatgacattcaaacgatacactgaaataataataatagtaataatgataataataataataattccattaaataacaattccacaaagccaaaataaaacaatacataaaatacaattttgaggggtggggtggggtggagagaaattaaataaatcataaattggacatcctttcatggcaatccatgcaatttcttcaaatttcagattggaaacctgcaatttaatcagaatttaaattaataataagtttaattaacaataaaaatacgtagctaatcctagttactaacgaattattaaaaaatatatgtttcatttcgcgatagataagcagcaaatatcgtatctaattctttattttccctttctgagagaaccaaatgaataacaacgcaagtttagatttaaaattcaaggtaaaatcaagttcaatatatatctatattaatctatattagttaatatgtaataacaagtaactaaattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0211M21-WjRq1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0211M21.1" temp_strand="-" temp_description="C12HBa0211M21.1  AC217247.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0211M21 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="17396" stop="16299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17103" g_stop="16599" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0211M21.1" gen_strand="-" ref_id="SGN-U334648" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0211M21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17103" e_stop="16599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTCATTGAAACATGACATTCAAACGATACACTGAAATAATAATAATAGTAATAATGATAATAATAATAATAATTCCATTAAATAACAATTCCACAAAGCCAAAATAAAACAATACATAAAATACAATTTTGAGGGGTGGGGTGGGGTGGAGAGAAATTAAATAAATCATAAATTGGACATCCTTTCATGGCAATCCATGCAATTTCTTCAAATTTCAGATTGGAAACCTGCAATTTAATCAGAATTTAAATTAATAATAAGTTTAATTAACAATAAAAATACGTAGCTAATCCTAGTTACTAACGAATTATTAAAAAATATATGTTTCATTTCGCGATAGATTAGCAGCAAATTTCGTATCTTATTCTTTTTTTTCCCTTTCTGAGAG-ACCAAATGAATAACAACGCAAGTTTAGATTTAAAATTCAAGGTAAAATCAGGTTTAATATATTTCTATATT-ATCTATATTTGTTAATATGTAATAACAAGTAACT-AATTATAT</genome_strand>
        <mrna_strand>GCACGAGATTGAAACATGACATTCAAACGATACACTGAAATAATAATAATAGTAATAATGATAATAATAATAATAATTCCATTAAATAACAATTCCACAAAGCCAAAATAAAACAATACATAAAATACAATTTTGAGGGGTGGGGTGGGGTGGAGAGAAATTAAATAAATCATAAATTGGACATCCTTTCATGGCAATCCATGCAATTTCTTCAAATTTCAGATTGGAAACCTGCAATTTAATCAGAATTTAAATTAATAATAAGTTTAATTAACAATAAAAATACGTAGCTAATCCTAGTTACTAACGAATTATTAAAAAATATATGTTTCATTTCGCGATAGATAAGCAGCAAATATCGTATCTAATTCTTTATTTTCCCTTTCTGAGAGAACCAAATGAATAACAACGCAAGTTTAGATTTAAAATTCAAGGTAAAATCAAGTTCAATATATATCTATATTAATCTATATTAGTTAATATGTAATAACAAGTAACTAAATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7MCeT9/lycopersicum_combined_unigene_seqs" ref_id="SGN-U342783" ref_strand="+" ref_description="SGN-U342783        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|56718873|gb|AAW28145.1| hAT-like transposase [Arabidopsis thaliana] (evalue: 1e-14, score=81.6)">
      <seq>tcaattggaactggctcgtgctgcagcaagtgaagatccatccataagcggtcttaccaaaacaatgcaagaggagtttgataaatactggaagagttgttgtctaatattagctattgccgttgtaatggatccacgcttcaaaatgaaacttgtagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0211M21-WjRq1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0211M21.1" temp_strand="-" temp_description="C12HBa0211M21.1  AC217247.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0211M21 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19786" stop="19027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19486" g_stop="19327" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0211M21.1" gen_strand="-" ref_id="SGN-U342783" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0211M21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19486" e_stop="19327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGGAACTGGCTCGTGCTGCAGCAAGTGAAGATCCATCCATAAGCGGTCTTACCAAAACAATGCAAGAGGAGTTTGATAAATACTGGAAGAGTTGTTGTCTAATATTAGCTATTGCCGTTGTAATGGATCCACGCTTCAAAATGAAACTTGTAGAA</genome_strand>
        <mrna_strand>TCAATTGGAACTGGCTCGTGCTGCAGCAAGTGAAGATCCATCCATAAGCGGTCTTACCAAAACAATGCAAGAGGAGTTTGATAAATACTGGAAGAGTTGTTGTCTAATATTAGCTATTGCCGTTGTAATGGATCCACGCTTCAAAATGAAACTTGTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7MCeT9/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319966" ref_strand="+" ref_description="SGN-U319966        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | hAT dimerisation domain-containing protein / BED zinc finger domain-containing protein / transposase-related, weak similarity to Tam3-transposase (Antirrhinum majus) GI:16064; contains Pfam profiles PF02892: BED zinc finger, PF05699: hAT family dimerisation domain | chr1:6385798-6388073 FORWARD | Aliases: F25I16.10, F25I16_10(evalue: 6e-17, score=85.9) genbank/nr: hAT-like(evalue: 2e-161, score=572)">
      <seq>atgagatgatgcatgaacatagtcatgagatgatgccggaacatgagatgatgcatgaacatcatatggtgcttgggcatgagatagtccctagcaatgagatggtcccggatgatgagatgatcccactaaatgagatggtccttgctgaaccacaacccaactatatagaaacacctccaaacaatccagaaacacagcccagcaagcgtaggaagaagaagtcaatagtttgggaacacttcaccattgaaaatgtcggcggtggaactagaagggcacaatgtaagcagtgcaagcaatcatttgcatatagtacaggttcaaaagtagctggcactagtcacctgaaacgccatattgcaaaaggaacctgtccagttgtcctacgtaaccaacagaataatcaattgagcccatatagtacacctcctaagatgagtggatatggtggtagtactgatgcaccaaaacggcgttataggactgcatcttctccttaccttgcttttgatcctgaccggtgccgtcaagagatctctaagatgatcatcatgcacgactatccccttcacatggttgagcatccaggctttcttgcttttgtgcagaatcttcaacctcgttttgatatggtgagcttcaacactgtgcaaggagattgtgtggcaacttatcttagagagaagcaagccattcagaaggtcattgagggagtgcctgggcgtatctgcttaacgctagatatgtggtcctcctgctacactgtgggctatgtgttcataaccgggcagtatattgacagtgagtggaaaattcacaggaaaatactcaatatcattatggaaccatatccagattctgacacggctttcagccatgctgttgctgcttgcctttctgactggagtatggaaggtaagttgttttctgtcactattaatcaaccgttgggtgatgcttctgttgataatcttagagctttactatctgtgaagaaccctcttgtgctcaacggtcagttgttggtcggaagttgtcttgctcgaactttaagcagcattgcccaaggtgcatttaattttttgcatgaaactgttaagaaagtaagagatagcgtcaagtacgtgaaaacatcagaatttcacgaggaaaagtttattgagctcaaacagcagcttcaagtgccaagcacaaagactttggctcttgatgaccagactcaatggaacaccacatatgagatgttgttagctgcatcagagttaaaggaagtgttttcatgcttggatacatctgatcccgattacaaggatgccctgtcaatggatgattggaagcaagttgaggttctttgtacttacttgaagatcctctttgacactgccaatcttctgactgcaccaacaattccaacaaccaacacattcttccatgaagcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0211M21-WjRq1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0211M21.1" temp_strand="-" temp_description="C12HBa0211M21.1  AC217247.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0211M21 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="21236" stop="19191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20936" g_stop="19491" g_length="1446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1446" r_length="1446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0211M21.1" gen_strand="-" ref_id="SGN-U319966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0211M21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20936" e_stop="19491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGATGATGCATGAACATAGTCATGAGATGATGCCGGAACATGAGATGATGCATGAACATCATATGGTGCTTGGGCATGAGATAGTCCCTAGCAATGAGATGGTCCCGGATGATGAGATGATCCCACTAAATGAGATGGTCCTTGCTGAACCACAACCCAACTATATAGAAACACCTCCAAACAATCCAGAAACACAGCCCAGCAAGCGTAGGAAGAAGAAGTCAATAGTTTGGGAACACTTCACCATTGAAAATGTCGGCGGTGGAACTAGAAGGGCACAATGTAAGCAGTGCAAGCAATCATTTGCATATAGTACAGGTTCAAAAGTAGCTGGCACTAGTCACCTGAAACGCCATATTGCAAAAGGAACCTGTCCAGTTGTCCTACGTAACCAACAGAATAATCAATTGAGCCCATATAGTACACCTCCTAAGATGAGTGGATATGGTGGTAGTACTGATGCACCAAAACGGCGTTATAGGACTGCATCTTCTCCTTACCTTGCTTTTGATCCTGACCGGTGCCGTCAAGAGATCTCTAAGATGATCATCATGCACGACTATCCCCTTCACATGGTTGAGCATCCAGGCTTTCTTGCTTTTGTGCAGAATCTTCAACCTCGTTTTGATATGGTGAGCTTCAACACTGTGCAAGGAGATTGTGTGGCAACTTATCTTAGAGAGAAGCAAGCCATTCAGAAGGTCATTGAGGGAGTGCCTGGGCGTATCTGCTTAACGCTAGATATGTGGTCCTCCTGCTACACTGTGGGCTATGTGTTCATAACCGGGCAGTATATTGACAGTGAGTGGAAAATTCACAGGAAAATACTCAATATCATTATGGAACCATATCCAGATTCTGACACGGCTTTCAGCCATGCTGTTGCTGCTTGCCTTTCTGACTGGAGTATGGAAGGTAAGTTGTTTTCTGTCACTATTAATCAACCGTTGGGTGATGCTTCTGTTGATAATCTTAGAGCTTTACTATCTGTGAAGAACCCTCTTGTGCTCAACGGTCAGTTGTTGGTCGGAAGTTGTCTTGCTCGAACTTTAAGCAGCATTGCCCAAGGTGCATTTAATTTTTTGCATGAAACTGTTAAGAAAGTAAGAGATAGCGTCAAGTACGTGAAAACATCAGAATTTCACGAGGAAAAGTTTATTGAGCTCAAACAGCAGCTTCAAGTGCCAAGCACAAAGACTTTGGCTCTTGATGACCAGACTCAATGGAACACCACATATGAGATGTTGTTAGCTGCATCAGAGTTAAAGGAAGTGTTTTCATGCTTGGATACATCTGATCCCGATTACAAGGATGCCCTGTCAATGGATGATTGGAAGCAAGTTGAGGTTCTTTGTACTTACTTGAAGATCCTCTTTGACACTGCCAATCTTCTGACTGCACCAACAATTCCAACAACCAACACATTCTTCCATGAAGCATGGA</genome_strand>
        <mrna_strand>ATGAGATGATGCATGAACATAGTCATGAGATGATGCCGGAACATGAGATGATGCATGAACATCATATGGTGCTTGGGCATGAGATAGTCCCTAGCAATGAGATGGTCCCGGATGATGAGATGATCCCACTAAATGAGATGGTCCTTGCTGAACCACAACCCAACTATATAGAAACACCTCCAAACAATCCAGAAACACAGCCCAGCAAGCGTAGGAAGAAGAAGTCAATAGTTTGGGAACACTTCACCATTGAAAATGTCGGCGGTGGAACTAGAAGGGCACAATGTAAGCAGTGCAAGCAATCATTTGCATATAGTACAGGTTCAAAAGTAGCTGGCACTAGTCACCTGAAACGCCATATTGCAAAAGGAACCTGTCCAGTTGTCCTACGTAACCAACAGAATAATCAATTGAGCCCATATAGTACACCTCCTAAGATGAGTGGATATGGTGGTAGTACTGATGCACCAAAACGGCGTTATAGGACTGCATCTTCTCCTTACCTTGCTTTTGATCCTGACCGGTGCCGTCAAGAGATCTCTAAGATGATCATCATGCACGACTATCCCCTTCACATGGTTGAGCATCCAGGCTTTCTTGCTTTTGTGCAGAATCTTCAACCTCGTTTTGATATGGTGAGCTTCAACACTGTGCAAGGAGATTGTGTGGCAACTTATCTTAGAGAGAAGCAAGCCATTCAGAAGGTCATTGAGGGAGTGCCTGGGCGTATCTGCTTAACGCTAGATATGTGGTCCTCCTGCTACACTGTGGGCTATGTGTTCATAACCGGGCAGTATATTGACAGTGAGTGGAAAATTCACAGGAAAATACTCAATATCATTATGGAACCATATCCAGATTCTGACACGGCTTTCAGCCATGCTGTTGCTGCTTGCCTTTCTGACTGGAGTATGGAAGGTAAGTTGTTTTCTGTCACTATTAATCAACCGTTGGGTGATGCTTCTGTTGATAATCTTAGAGCTTTACTATCTGTGAAGAACCCTCTTGTGCTCAACGGTCAGTTGTTGGTCGGAAGTTGTCTTGCTCGAACTTTAAGCAGCATTGCCCAAGGTGCATTTAATTTTTTGCATGAAACTGTTAAGAAAGTAAGAGATAGCGTCAAGTACGTGAAAACATCAGAATTTCACGAGGAAAAGTTTATTGAGCTCAAACAGCAGCTTCAAGTGCCAAGCACAAAGACTTTGGCTCTTGATGACCAGACTCAATGGAACACCACATATGAGATGTTGTTAGCTGCATCAGAGTTAAAGGAAGTGTTTTCATGCTTGGATACATCTGATCCCGATTACAAGGATGCCCTGTCAATGGATGATTGGAAGCAAGTTGAGGTTCTTTGTACTTACTTGAAGATCCTCTTTGACACTGCCAATCTTCTGACTGCACCAACAATTCCAACAACCAACACATTCTTCCATGAAGCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7MCeT9/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326499" ref_strand="+" ref_description="SGN-U326499        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | plastocyanin-like domain-containing protein, contains similarity to SP:Q02917 Early nodulin 55-2 precursor {Glycine max}; PF02298: Plastocyanin-like domain | chr5:21887259-21888454 REVERSE | Aliases: K19P17.3, K19P17_3(evalue: 1e-07, score=54.3) genbank/nr: mucin(evalue: 2e-17, score=92.4)">
      <seq>ccctattctcttttcctctctctctcttctttctctctcctccagctacggccgaaaacctagatctgattcactaccggagcctgaaaaactcgtcggcttcgaaattcctatctgggttttgctcagaattgaatttcggtaattgggttcttctcaaaattcaaaatttccaacagccttgagcttctggatattgatggcaaccccagaaaccgcagctcctccagcaacccctactgagaataatgagatggtgccgaaaaatgagatgatacatgagcatggtgatgagatggtgccgcaaaatgagatgatacatgagcatggtgatgagatggtgccgcaaaatgagatgatacatgagcaaagccatgagattgtgccggaaaatgagatgcaaaatgagatgatacatgagattgtgccggaaaatgagatgcaaaatgagatgatacatgagcacagccatgacattgtgcctgaaaatgagatgcaaaatgagcacagccatgagattatgccggaaaatgagatgatacgtgagcacagccatgagattgtgcgggaaaatgagatgatacctgagcacaatcatgagatagtgccggaaaatgagatgatacatgagtgcagtcacgagacagtgccacaaaatgagatggtacatgagcatagtcatgaaatggtgccagataatgagatgacacatgagcacactcacgagatggtgccggaaaatgagatgacacatgatcataatcacgagatggtgcaggaaaatgagatgacacatgagcataatcacgagatggtgccggaaaatgagatgatgcatgaacatggtcatgagatggtgccggaacatgagatgatgcatgaacatagtcatgagatgatgccggaacatgagatgatgcatgaacatcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0211M21-WjRq1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0211M21.1" temp_strand="-" temp_description="C12HBa0211M21.1  AC217247.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0211M21 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="23993" stop="20570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23693" g_stop="23515" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23514" i_stop="21624" i_length="1891">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21623" g_stop="20870" g_length="754"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="933" r_length="754" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0211M21.1" gen_strand="-" ref_id="SGN-U326499" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0211M21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23693" e_stop="23515"/>
          <exon e_start="21623" e_stop="20870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTCTCTTTTCCTCTCTCTCTCTTCTTTCTCTCTCCTCCAGCTACGGCCGAAAACCTAGATCTGATTCACTACCGGAGCCTGAAAAACTCGTCGGCTTCGAAATTCCTATCTGGGTTTTGCTCAGAATTGAATTTCGGTAATTGGGTTCTTCTCAAAATTCAAAATTTCCAACAGGTATGGTAGTAGTACTACCCCCTTTTGTTCAATTCAGATTTGATTTAGTTTTTCATTTTTTTAAATCGATTTTTAGCTATGGATTTACTGTGTTAGTGTGAAGATTTGTGTAAAATGTGTGCTGAATAAGATTTTAAAGGTTTATGTTCTTAGATTTTGATATTTCAGTATCTGTTGTGAGGTATTTGAAGCTTCTTAGGCTCATTTCAAAGTTTAGCTGATGTGTTTTGTTAAAAAAGTTGGGATTTTTTTATCTTTTTATTGATGTTCTGGGCTGGAAGTTTGCAGGTTTAATGAAATTCAAGGCTGTATGTGAAATATTGATGAAGTTTTTGGTTGAATTTTTTGTCTGGGTAGTGTAATAGATCCATTGTTAGTAAAAAAGAGGATTTTGATCTGGGCTTTGTTTAGATTTATCTATAAGCCCATGTTTGATCCATTTTCGGAGTTAGATTTTTGTAAGTTGATGTTTCTATCTTGTTAGCCCATGTGTTGTAAAATGTCCATTTTAGCCCTGACTTCCATTGAAAATAGAGTTTTACTCTCCTTGTTGCCTTAGGAGGACTAGTAGTATTTAGCTTTGGGTTAGGTGTGGGTTCGGGCCGGGCCGGGCCGGTGGAGGTAACACCGGGCTTTCCGAGATGCTCCACGGGCTATATTGTTCTGCTACGAGGAACTAATTTGGTGTAGTTTGTTGGCTAAAGCTTTGAGTCTCATGTACTATTTGTCCGAAGAGTGAGTTTAGGGAGCTGTTTGTCCATTGATTTTGTTTTGAACATTTGAAATAATATATGGAGATTATTTCAAGTAAGTATTTGCTTATCATACTGACCCATTGTTTCAACTTCAAACTTGAAATATGGAATTTGAAGTTTAAATTGTCATTCGTGCACCTGTCCTCAATGGAAGAATGAGTGATTTGTCAACCCTGGACAGGTGGCGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGGGAATTTCCGGTGGAGCAGTGAAATGCGTAGTGAGCGGAGAGTTTTTCAAGTTTAACTCACCAAAACTTCCAACTATGTTTTCATATCTAAATACAATTTCAACTTCAACTTCCAAGTACCATTTGGTTAACTTAACGTCTGATTTTTTCTCCAAATATCAACCAATTCATGCACAAATGCCTACTAAGTATGGTTGAAGCAATGGAGTTGCAGCCTAAGGTTTGCAACTTCATGCGACATTCATTAGGTGCAGGGTTCAATACCTACTGATAGCCATTGGCTGCAACTCAATACTGAATCTCTATGGTGCAAGGTTCAATTCCTACATATGGCTCTCCCTTAATCCAGAAACAGTATAAAACACCGTGTTTACTTTGCAGCTTCATGACAAATCCAAGGAACCACCTTTATTCTGCTTGATAGAAGCTAAGGTGCAACATTAACATTTGTTGTGGACCTAAGCTTACAAAGGATGCAAAGCCCTTACCAGAAATGGATGATGCATTCAGCTCCGCTGTAGCCATTTCTTTCTTTTCAAGGAAAGATCTTGGACTGATAGCCACGGAGGGTTTTCTCTAAAACTGACTGAGGAGTGAATGAGGTGTGATTTTAGACTTATCAAAGATATAATACGTCGAGCTGTGAAGTATATCAAAACAGACACTAGTTTACAGAGGGAGGAGGAAGAAAGAGAATTCGTATTGATTTTTTTAACACAAAAGAATCTTAGTTTCCTGAGAGTCATTACAGAAAATGCACACACACGCACGCATCCATGATGGTGTTCTTTTCGGGCATGTGTTTTGTGTGGTCGCTCTTCTTTTCTTCTGTTCACAATATATACGATTTTTGTTTTCTTTCTCCTTATTTATTGTTATATTATACAGATAATTGATAAGTGTTGTGCTTCTAACAGCCTTGAGCTTCTGGATATTGATGGCAACCCCAGAAACCGCAGCTCCTCCAGCAACCCCTACTGAGAATAATGAGATGGTGCCGAAAAATGAGATGATACATGAGCATGGTGATGAGATGGTGCCGCAAAATGAGATGATACATGAGCATGGTGATGAGATGGTGCCGCAAAATGAGATGATACATGAGCAAAGCCATGAGATTGTGCCGGAAAATGAGATGCAAAATGAGATGATACATGAGATTGTGCCGGAAAATGAGATGCAAAATGAGATGATACATGAGCACAGCCATGACATTGTGCCTGAAAATGAGATGCAAAATGAGCACAGCCATGAGATTATGCCGGAAAATGAGATGATACGTGAGCACAGCCATGAGATTGTGCGGGAAAATGAGATGATACCTGAGCACAATCATGAGATAGTGCCGGAAAATGAGATGATACATGAGTGCAGTCACGAGACAGTGCCACAAAATGAGATGGTACATGAGCATAGTCATGAAATGGTGCCAGATAATGAGATGACACATGAGCACACTCACGAGATGGTGCCGGAAAATGAGATGACACATGATCATAATCACGAGATGGTGCAGGAAAATGAGATGACACATGAGCATAATCACGAGATGGTGCCGGAAAATGAGATGATGCATGAACATGGTCATGAGATGGTGCCGGAACATGAGATGATGCATGAACATAGTCATGAGATGATGCCGGAACATGAGATGATGCATGAACATCATAT</genome_strand>
        <mrna_strand>CCCTATTCTCTTTTCCTCTCTCTCTCTTCTTTCTCTCTCCTCCAGCTACGGCCGAAAACCTAGATCTGATTCACTACCGGAGCCTGAAAAACTCGTCGGCTTCGAAATTCCTATCTGGGTTTTGCTCAGAATTGAATTTCGGTAATTGGGTTCTTCTCAAAATTCAAAATTTCCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGAGCTTCTGGATATTGATGGCAACCCCAGAAACCGCAGCTCCTCCAGCAACCCCTACTGAGAATAATGAGATGGTGCCGAAAAATGAGATGATACATGAGCATGGTGATGAGATGGTGCCGCAAAATGAGATGATACATGAGCATGGTGATGAGATGGTGCCGCAAAATGAGATGATACATGAGCAAAGCCATGAGATTGTGCCGGAAAATGAGATGCAAAATGAGATGATACATGAGATTGTGCCGGAAAATGAGATGCAAAATGAGATGATACATGAGCACAGCCATGACATTGTGCCTGAAAATGAGATGCAAAATGAGCACAGCCATGAGATTATGCCGGAAAATGAGATGATACGTGAGCACAGCCATGAGATTGTGCGGGAAAATGAGATGATACCTGAGCACAATCATGAGATAGTGCCGGAAAATGAGATGATACATGAGTGCAGTCACGAGACAGTGCCACAAAATGAGATGGTACATGAGCATAGTCATGAAATGGTGCCAGATAATGAGATGACACATGAGCACACTCACGAGATGGTGCCGGAAAATGAGATGACACATGATCATAATCACGAGATGGTGCAGGAAAATGAGATGACACATGAGCATAATCACGAGATGGTGCCGGAAAATGAGATGATGCATGAACATGGTCATGAGATGGTGCCGGAACATGAGATGATGCATGAACATAGTCATGAGATGATGCCGGAACATGAGATGATGCATGAACATCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7MCeT9/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312594" ref_strand="+" ref_description="SGN-U312594        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:3830613-3830972 REVERSE | Aliases: F7B19.23, F7B19_23(evalue: 2e-31, score=133) genbank/nr: gi|14586969|gb|AAK70407.1| pol polyprotein [Citrus x paradisi](evalue: 2e-61, score=239)">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0211M21-WjRq1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0211M21.1" temp_strand="-" temp_description="C12HBa0211M21.1  AC217247.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0211M21 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="45263" stop="43437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44964" g_stop="43737" g_length="1228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1222" r_length="1222" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0211M21.1" gen_strand="-" ref_id="SGN-U312594" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>1228</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0211M21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44964" e_stop="43737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTCACTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACGATTATTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTACAAGATGATCTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATACATGATCTCCTTGCTGAAGGATTAATTATGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAATGAGATGACTGTTGA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTC------TGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7MCeT9/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333723" ref_strand="-" ref_description="SGN-U333723        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:3830613-3830972 REVERSE | Aliases: F7B19.23, F7B19_23(evalue: 3e-18, score=84.7) genbank/nr: putative(evalue: 5e-22, score=107)">
      <seq>gaacagatttcacagaacagacacgttccttgctgaaaattgctataaaggaagtcaattttgattttcaaacactgaaaattttccttctcngtattatttttctctaaaaaaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgctgttctgaagtttgctgaagttaaagaagtttgagaaaaaaaaagactaactcaagtcaaacaaatgctggaatagtaagtgctgcaacaacatcggctgcacataatcattcagatgctatcttagcggcggctgagaaacctgcagagttttctggagtcgactttgagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcattaatgagaatgttcctgtttatcagatgaaactccggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgaacaacaatgccaaaacctcaaagaactcttggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggtaaaatttttggactataagatgatagacaataagactgtcgtcacccaagttcaagaattgcaggtcataatccatgatctgtgctgaatgtataaatttatttaatgcctatgttagaaatattaagttttcccttaataaatttatttaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0211M21-WjRq1/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0211M21.1" temp_strand="-" temp_description="C12HBa0211M21.1  AC217247.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0211M21 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="45282" stop="43560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44982" g_stop="44788" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44787" i_stop="44361" i_length="427">
            <donor d_prob="0.759" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44360" g_stop="43864" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="670" r_length="481" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="748" polyA_stop="757"/>
      <MATCH_line gen_id="C12HBa0211M21.1" gen_strand="-" ref_id="SGN-U333723" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0211M21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333723" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44982" e_stop="44788"/>
          <exon e_start="44360" e_stop="43864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTCACTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAGAAATTTAACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACGATTATTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTACAAGATGATCTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATACATG</genome_strand>
        <mrna_strand>GAACAGATTTCACAGAACAGACACGTTCCTTGCTGAAAATTGCTAT-AAAGGAAGTCAA-TTTTGA-TTTTCAAACACTGAAAA-TTTTCCTTCTCNGTATT-ATTTTTCTCT-AAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTGAAGTTTGCTGAAGTTAAAGAAGTTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAGACTAACTCAAGTCAAACAAATGCTGGAATAGTAAGTGCTGCAACAACATCGGCTGCACATAATCATTCAGATGCTATCTTAGCGGCGGCTGAGAAACCTGCAGAGTTTTCTGGAGTCGACTTTGAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTT-TATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGC-A-A-GA--TG----A-----ACAACAATGCCAAAACCTC-AAAGAACTCTTGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGTAAAATTTTTGGACTATAAGATGATAGACAATAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="1790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="237"/>
            <exon e_start="535" e_stop="627"/>
            <exon e_start="1415" e_stop="1790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1" e_stop="237" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.996">
            <gDNA_intron_boundary i_start="238" i_stop="534" i_length="297"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="535" e_stop="627" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="628" i_stop="1414" i_length="787"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="1415" e_stop="1790" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="237"/>
              <exon start="535" stop="627"/>
              <exon start="1415" stop="1790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328546" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATTTCATATTAATTCAGATCAAGAAAAAGATTATCGGAATATATCGAAGATGAAGAATAAGAAGAATATTGAAAGAAATAAAAGGGAAAAATACCCTTTAATTTCTTATCAAGAATTACCAGAATATATGAAGGATAATGAGTTTATTTTGAATTATTATAGAGCTAATTGGCCTCTCAAACAAGCATTTTTCAGTATTTTCAGTTGGCATAATGAAACTCTTAATGTTTGGAC : GCATTTAATTGGATTTATTCTATTTGTGGTATTAACCATAGCTAATGCAGAGCATTTATCTCAAATTGCTGATTTTATGACTATGTTTATCCG : GAATTTTCCAACAAGTGGAGATGCGAATATATCTCACAATTTTAAGGTACTTTTAAGTATTGTTAGTAGTAACTTAATGAACTTATAAGTTATTTAATATATCGATACAATTCAGTCGCTTAAAAGATAATTACAGGTCTAATATACTCAATAACTAAAATTAGTTACTTAATATAAAATAAGTAAGAAGTAGACCCTTCGGGGTGGTCTAGTGGTTTGAGCTTGGGACTTCCATGTTGGAGGTTTAAGTTCAAAACCCCTTGCCAGCGAAAGCAAAAATTTACCTCTCCTGCGGATTTCCCTTGTCATAAAAAAAAGAGAGTAAGAAATAACTTATTCATACTGATCGAGTTACTAAACTGAAAAATAAAATAAA</gDNA_template>
            <first_frame> L  I  S  Y  *  F  R  S  R  K  R  L  S  E  Y  I  E  D  E  E  *  E  E  Y  *  K  K  *  K  G  K  I  P  F  N  F  L  S  R  I  T  R  I  Y  E  G  *  *  V  Y  F  E  L  L  *  S  *  L  A  S  Q  T  S  I  F  Q  Y  F  Q  L  A  *  *  N  S  *  C  L  D  :  A  F  N  W  I  Y  S  I  C  G  I  N  H  S  *  C  R  A  F  I  S  N  C  *  F  Y  D  Y  V  Y  P  :  E  F  S  N  K  W  R  C  E  Y  I  S  Q  F  *  G  T  F  K  Y  C  *  *  *  L  N  E  L  I  S  Y  L  I  Y  R  Y  N  S  V  A  *  K  I  I  T  G  L  I  Y  S  I  T  K  I  S  Y  L  I  *  N  K  *  E  V  D  P  S  G  W  S  S  G  L  S  L  G  L  P  C  W  R  F  K  F  K  T  P  C  Q  R  K  Q  K  F  T  S  P  A  D  F  P  C  H  K  K  K  R  V  R  N  N  L  F  I  L  I  E  L  L  N  *  K  I  K  *  </first_frame>
            <second_frame>  *  F  H  I  N  S  D  Q  E  K  D  Y  R  N  I  S  K  M  K  N  K  K  N  I  E  R  N  K  R  E  K  Y  P  L  I  S  Y  Q  E  L  P  E  Y  M  K  D  N  E  F  I  L  N  Y  Y  R  A  N  W  P  L  K  Q  A  F  F  S  I  F  S  W  H  N  E  T  L  N  V  W  T :   H  L  I  G  F  I  L  F  V  V  L  T  I  A  N  A  E  H  L  S  Q  I  A  D  F  M  T  M  F  I  R :   N  F  P  T  S  G  D  A  N  I  S  H  N  F  K  V  L  L  S  I  V  S  S  N  L  M  N  L  *  V  I  *  Y  I  D  T  I  Q  S  L  K  R  *  L  Q  V  *  Y  T  Q  *  L  K  L  V  T  *  Y  K  I  S  K  K  *  T  L  R  G  G  L  V  V  *  A  W  D  F  H  V  G  G  L  S  S  K  P  L  A  S  E  S  K  N  L  P  L  L  R  I  S  L  V  I  K  K  R  E  *  E  I  T  Y  S  Y  *  S  S  Y  *  T  E  K  *  N  K </second_frame>
            <third_frame>   N  F  I  L  I  Q  I  K  K  K  I  I  G  I  Y  R  R  *  R  I  R  R  I  L  K  E  I  K  G  K  N  T  L  *  F  L  I  K  N  Y  Q  N  I  *  R  I  M  S  L  F  *  I  I  I  E  L  I  G  L  S  N  K  H  F  S  V  F  S  V  G  I  M  K  L  L  M  F  G   : R  I  *  L  D  L  F  Y  L  W  Y  *  P  *  L  M  Q  S  I  Y  L  K  L  L  I  L  *  L  C  L  S   : G  I  F  Q  Q  V  E  M  R  I  Y  L  T  I  L  R  Y  F  *  V  L  L  V  V  T  *  *  T  Y  K  L  F  N  I  S  I  Q  F  S  R  L  K  D  N  Y  R  S  N  I  L  N  N  *  N  *  L  L  N  I  K  *  V  R  S  R  P  F  G  V  V  *  W  F  E  L  G  T  S  M  L  E  V  *  V  Q  N  P  L  P  A  K  A  K  I  Y  L  S  C  G  F  P  L  S  *  K  K  E  S  K  K  *  L  I  H  T  D  R  V  T  K  L  K  N  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0211M21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5" stop="237"/>
                    <exon start="535" stop="627"/>
                    <exon start="1415" stop="1502"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHINSDQEKDYRNISKMKNKKNIERNKREKYPLISYQELPEYMKDNEFILNYYRANWPLKQAFFSIFSWHNETLNVWTHLIGFILFVVLTIANAEHLSQIADFMTMFIRNFPTSGDANISHNFKVLLSIVSSNLMNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15439" PGL_stop="18631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15439" e_stop="16281"/>
            <exon e_start="16873" e_stop="17129"/>
            <exon e_start="17645" e_stop="17658"/>
            <exon e_start="17728" e_stop="17808"/>
            <exon e_start="18290" e_stop="18318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.714"/>
          <exon-intron don_prob="0.000" acc_prob="0.843" e_score="0.617"/>
          <exon-only e_score="0.448"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15439" e_stop="16281" e_length="843"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16282" i_stop="16872" i_length="591"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="16873" e_stop="17129" e_length="257"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17130" i_stop="17644" i_length="515"/>
          </intron>
          <exon e_serial="3" e_score="0.714">
            <gDNA_exon_boundary e_start="17645" e_stop="17658" e_length="14"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17659" i_stop="17727" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="0.617">
            <gDNA_exon_boundary e_start="17728" e_stop="17808" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.843">
            <gDNA_intron_boundary i_start="17809" i_stop="18289" i_length="481"/>
          </intron>
          <exon e_serial="5" e_score="0.448">
            <gDNA_exon_boundary e_start="18290" e_stop="18318" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15439" stop="16281"/>
              <exon start="16873" stop="17129"/>
              <exon start="17645" stop="17658"/>
              <exon start="17728" stop="17808"/>
              <exon start="18290" stop="18318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTATCTATATAACACCACAATCTTTGTACCAAATTATTTAACCACAAAAAATGGAGTTCTCTAAGATAACTTCACTTCTTTTCATTTCTATGCTTTTCCTTTCTTCATTCACTCCCATTCTTGGATGTGGCTATTGTGGTAAACCTTCTCACAAGCCCAAAAAGCCCAAAGTTCCCACTCCCATTGTCAAACCCCCTGTCGATTTGCCCCCTATCGGAATTCCACCAATCGTGAAACCACCTGTTAATTTGCCCCCTATCGGAATTCCACCGATCGTAAAACCACCAGTCAAATTGCCACCTATCGGAATTCCACCAATCGTAAAACCGCCCGTCATATTGCCACCTGTCGGAATTCCACCAATCGTAAAACCACCTGTCAAATTGCCACCTGTCGGAATTCCACCAATCGTAAAACCACCTGTTGATTTGCCACCTGTTGGGATTCCACCGGTCACAGTTCCACCAATTGTAAAACCTCCAGTTGATTTGCCACCTATTGGAATTCCACCAGTCACAGTTCCACCAGTAATTAAACCATCACCTAAAGGGAAAAAACCTTGTCCACCAACAACAAAGGCAACATGCCCAATTGACACATTGAAACTTGGGGCTTGTGTGGATCTTTTAGGTGGGCTTGTTCATATTGGCCTTGGTGATCCAGCTGTTAATGAATGTTGTCCAATACTTAGTGGGCTTGTTGAACTTGAAGCTGCTGCTTGCCTTTGCACAACACTTAAAGTCAAATTACTTAACCTCAAAATCTATGTACCTCTAGCACTTCAACTCCTTGTTACTTGTGGAAAGAGTCCACCACCTGGCTACACTTGTTCCATCTAG : GTTTCCAATCTGAAATTTGAAGAAATTGCATGGATTGCCATGAAAGGATGTCCAATTTATGATTTATTTAATTTCTCTCCACCCCACCCCACCCCTCAAAATTGTATTTTATGTATTGTTTTATTTTGGCTTTGTGGAATTGTTATTTAATGGAATTATTATTATTATTATCATTATTACTATTATTATTATTTCAGTGTATCGTTTGAATGTCATGTTTCAATGAATTGGGAAAAAAAAAACAAGTATTTTTTTCA : AAAAAAAAGTATCA : AAAAAAAAAGATATTAATGATTTGAAAATCGTAACTTCATTATAACAAACTTGGATTTTTTTTTAAAAAAAAAAAAGATAA : TATCAATGGTTGATTCCACAGCCTCGAGC</gDNA_template>
            <first_frame> F  S  I  Y  I  T  P  Q  S  L  Y  Q  I  I  *  P  Q  K  M  E  F  S  K  I  T  S  L  L  F  I  S  M  L  F  L  S  S  F  T  P  I  L  G  C  G  Y  C  G  K  P  S  H  K  P  K  K  P  K  V  P  T  P  I  V  K  P  P  V  D  L  P  P  I  G  I  P  P  I  V  K  P  P  V  N  L  P  P  I  G  I  P  P  I  V  K  P  P  V  K  L  P  P  I  G  I  P  P  I  V  K  P  P  V  I  L  P  P  V  G  I  P  P  I  V  K  P  P  V  K  L  P  P  V  G  I  P  P  I  V  K  P  P  V  D  L  P  P  V  G  I  P  P  V  T  V  P  P  I  V  K  P  P  V  D  L  P  P  I  G  I  P  P  V  T  V  P  P  V  I  K  P  S  P  K  G  K  K  P  C  P  P  T  T  K  A  T  C  P  I  D  T  L  K  L  G  A  C  V  D  L  L  G  G  L  V  H  I  G  L  G  D  P  A  V  N  E  C  C  P  I  L  S  G  L  V  E  L  E  A  A  A  C  L  C  T  T  L  K  V  K  L  L  N  L  K  I  Y  V  P  L  A  L  Q  L  L  V  T  C  G  K  S  P  P  P  G  Y  T  C  S  I  *  :  V  S  N  L  K  F  E  E  I  A  W  I  A  M  K  G  C  P  I  Y  D  L  F  N  F  S  P  P  H  P  T  P  Q  N  C  I  L  C  I  V  L  F  W  L  C  G  I  V  I  *  W  N  Y  Y  Y  Y  Y  H  Y  Y  Y  Y  Y  Y  F  S  V  S  F  E  C  H  V  S  M  N  W  E  K  K  N  K  Y  F  F  Q :   K  K  S  I   : K  K  K  R  Y  *  *  F  E  N  R  N  F  I  I  T  N  L  D  F  F  L  K  K  K  K  I   : I  S  M  V  D  S  T  A  S  S </first_frame>
            <second_frame>  F  L  S  I  *  H  H  N  L  C  T  K  L  F  N  H  K  K  W  S  S  L  R  *  L  H  F  F  S  F  L  C  F  S  F  L  H  S  L  P  F  L  D  V  A  I  V  V  N  L  L  T  S  P  K  S  P  K  F  P  L  P  L  S  N  P  L  S  I  C  P  L  S  E  F  H  Q  S  *  N  H  L  L  I  C  P  L  S  E  F  H  R  S  *  N  H  Q  S  N  C  H  L  S  E  F  H  Q  S  *  N  R  P  S  Y  C  H  L  S  E  F  H  Q  S  *  N  H  L  S  N  C  H  L  S  E  F  H  Q  S  *  N  H  L  L  I  C  H  L  L  G  F  H  R  S  Q  F  H  Q  L  *  N  L  Q  L  I  C  H  L  L  E  F  H  Q  S  Q  F  H  Q  *  L  N  H  H  L  K  G  K  N  L  V  H  Q  Q  Q  R  Q  H  A  Q  L  T  H  *  N  L  G  L  V  W  I  F  *  V  G  L  F  I  L  A  L  V  I  Q  L  L  M  N  V  V  Q  Y  L  V  G  L  L  N  L  K  L  L  L  A  F  A  Q  H  L  K  S  N  Y  L  T  S  K  S  M  Y  L  *  H  F  N  S  L  L  L  V  E  R  V  H  H  L  A  T  L  V  P  S  R :   F  P  I  *  N  L  K  K  L  H  G  L  P  *  K  D  V  Q  F  M  I  Y  L  I  S  L  H  P  T  P  P  L  K  I  V  F  Y  V  L  F  Y  F  G  F  V  E  L  L  F  N  G  I  I  I  I  I  I  I  I  T  I  I  I  I  S  V  Y  R  L  N  V  M  F  Q  *  I  G  K  K  K  T  S  I  F  F   : K  K  K  V  S  :  K  K  K  D  I  N  D  L  K  I  V  T  S  L  *  Q  T  W  I  F  F  *  K  K  K  R  *  :  Y  Q  W  L  I  P  Q  P  R   </second_frame>
            <third_frame>   F  Y  L  Y  N  T  T  I  F  V  P  N  Y  L  T  T  K  N  G  V  L  *  D  N  F  T  S  F  H  F  Y  A  F  P  F  F  I  H  S  H  S  W  M  W  L  L  W  *  T  F  S  Q  A  Q  K  A  Q  S  S  H  S  H  C  Q  T  P  C  R  F  A  P  Y  R  N  S  T  N  R  E  T  T  C  *  F  A  P  Y  R  N  S  T  D  R  K  T  T  S  Q  I  A  T  Y  R  N  S  T  N  R  K  T  A  R  H  I  A  T  C  R  N  S  T  N  R  K  T  T  C  Q  I  A  T  C  R  N  S  T  N  R  K  T  T  C  *  F  A  T  C  W  D  S  T  G  H  S  S  T  N  C  K  T  S  S  *  F  A  T  Y  W  N  S  T  S  H  S  S  T  S  N  *  T  I  T  *  R  E  K  T  L  S  T  N  N  K  G  N  M  P  N  *  H  I  E  T  W  G  L  C  G  S  F  R  W  A  C  S  Y  W  P  W  *  S  S  C  *  *  M  L  S  N  T  *  W  A  C  *  T  *  S  C  C  L  P  L  H  N  T  *  S  Q  I  T  *  P  Q  N  L  C  T  S  S  T  S  T  P  C  Y  L  W  K  E  S  T  T  W  L  H  L  F  H  L   : G  F  Q  S  E  I  *  R  N  C  M  D  C  H  E  R  M  S  N  L  *  F  I  *  F  L  S  T  P  P  H  P  S  K  L  Y  F  M  Y  C  F  I  L  A  L  W  N  C  Y  L  M  E  L  L  L  L  L  S  L  L  L  L  L  L  F  Q  C  I  V  *  M  S  C  F  N  E  L  G  K  K  K  Q  V  F  F  S  :  K  K  K  Y  Q :   K  K  K  I  L  M  I  *  K  S  *  L  H  Y  N  K  L  G  F  F  F  K  K  K  K  D  N :   I  N  G  *  F  H  S  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0211M21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15484" stop="16281"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQKMEFSKITSLLFISMLFLSSFTPILGCGYCGKPSHKPKKPKVPTPIVKPPVDLPPIGIPPIVKPPVNLPPIGIPPIVKPPVKLPPIGIPPIVKPPVILPPVGIPPIVKPPVKLPPVGIPPIVKPPVDLPPVGIPPVTVPPIVKPPVDLPPIGIPPVTVPPVIKPSPKGKKPCPPTTKATCPIDTLKLGACVDLLGGLVHIGLGDPAVNECCPILSGLVELEAAACLCTTLKVKLLNLKIYVPLALQLLVTCGKSPPPGYTCSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16224" e_stop="16281"/>
            <exon e_start="16873" e_stop="17131"/>
            <exon e_start="18606" e_stop="18631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.931"/>
          <exon-intron don_prob="0.000" acc_prob="0.517" e_score="0.938"/>
          <exon-only e_score="0.615"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="16224" e_stop="16281" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16282" i_stop="16872" i_length="591"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="16873" e_stop="17131" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.517">
            <gDNA_intron_boundary i_start="17132" i_stop="18605" i_length="1474"/>
          </intron>
          <exon e_serial="3" e_score="0.615">
            <gDNA_exon_boundary e_start="18606" e_stop="18631" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16224" stop="16281"/>
              <exon start="16873" stop="17131"/>
              <exon start="18606" stop="18631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334646" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACTCCTTGTTACTTGTGGAAAGAGTCCACCACCTGGCTACACTTGTTCCATCTAG : GTTTCCAATCTGAAATTTGAAGAAATTGCATGGATTGCCATGAAAGGATGTCCAATTTATGATTTATTTAATTTCTCTCCACCCCACCCCACCCCTCAAAATTGTATTTTATGTATTGTTTTATTTTGGCTTTGTGGAATTGTTATTTAATGGAATTATTATTATTATTATCATTATTACTATTATTATTATTTCAGTGTATCGTTTGAATGTCATGTTTCAATGAATTGGGAAAAAAAAAACAAGTATTTTTTTCAAT : ACATCAACGAAAAAAGACATCGAAAA</gDNA_template>
            <first_frame> S  T  P  C  Y  L  W  K  E  S  T  T  W  L  H  L  F  H  L   : G  F  Q  S  E  I  *  R  N  C  M  D  C  H  E  R  M  S  N  L  *  F  I  *  F  L  S  T  P  P  H  P  S  K  L  Y  F  M  Y  C  F  I  L  A  L  W  N  C  Y  L  M  E  L  L  L  L  L  S  L  L  L  L  L  L  F  Q  C  I  V  *  M  S  C  F  N  E  L  G  K  K  K  Q  V  F  F  S  I :   H  Q  R  K  K  T  S  K  </first_frame>
            <second_frame>  Q  L  L  V  T  C  G  K  S  P  P  P  G  Y  T  C  S  I  *  :  V  S  N  L  K  F  E  E  I  A  W  I  A  M  K  G  C  P  I  Y  D  L  F  N  F  S  P  P  H  P  T  P  Q  N  C  I  L  C  I  V  L  F  W  L  C  G  I  V  I  *  W  N  Y  Y  Y  Y  Y  H  Y  Y  Y  Y  Y  Y  F  S  V  S  F  E  C  H  V  S  M  N  W  E  K  K  N  K  Y  F  F  Q   : Y  I  N  E  K  R  H  R  K </second_frame>
            <third_frame>   N  S  L  L  L  V  E  R  V  H  H  L  A  T  L  V  P  S  R :   F  P  I  *  N  L  K  K  L  H  G  L  P  *  K  D  V  Q  F  M  I  Y  L  I  S  L  H  P  T  P  P  L  K  I  V  F  Y  V  L  F  Y  F  G  F  V  E  L  L  F  N  G  I  I  I  I  I  I  I  I  T  I  I  I  I  S  V  Y  R  L  N  V  M  F  Q  *  I  G  K  K  K  T  S  I  F  F  N  :  T  S  T  K  K  D  I  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0211M21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16192" PGL_stop="15500"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16192" e_stop="15893"/>
            <exon e_start="15667" e_stop="15500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="16192" e_stop="15893" e_length="300"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15892" i_stop="15668" i_length="225"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="15667" e_stop="15500" e_length="168"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16192" stop="15893"/>
              <exon start="15667" stop="15500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334649" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAATTTGACTTTAAGTGTTGTGCAAAGGCAAGCAGCAGCTTCAAGTTCAACAAGCCCACTAAGTATTGGACAACATTCATTAACAGCTGGATCACCAAGGCCAATATGAACAAGCCCACCTAAAAGATCCACACAAGCCCCAAGTTTCAATGTGTCAATTGGGCATGTTGCCTTTGTTGTTGGTGGACAAGGTTTTTTCCCTTTAGGTGATGGTTTAATTACTGGTGGAACTGTGACTGGTGGAATTCCAATAGGTGGCAAATCAACTGGAGGTTTTACAATTGGTGGAACTGTGACCG : GTGGAATTCCGATAGGGGGCAAATCGACAGGGGGTTTGACAATGGGAGTGGGAACTTTGGGCTTTTTGGGCTTGTGAGAAGGTTTACCACAATAGCCACATCCAAGAATGGGAGTGAATGAAGAAAGGAAAAGCATAGAAATGAAAAGAAGTGAAGTTATCTTAGAGA</gDNA_template>
            <first_frame> V  I  *  L  *  V  L  C  K  G  K  Q  Q  L  Q  V  Q  Q  A  H  *  V  L  D  N  I  H  *  Q  L  D  H  Q  G  Q  Y  E  Q  A  H  L  K  D  P  H  K  P  Q  V  S  M  C  Q  L  G  M  L  P  L  L  L  V  D  K  V  F  S  L  *  V  M  V  *  L  L  V  E  L  *  L  V  E  F  Q  *  V  A  N  Q  L  E  V  L  Q  L  V  E  L  *  P  :  V  E  F  R  *  G  A  N  R  Q  G  V  *  Q  W  E  W  E  L  W  A  F  W  A  C  E  K  V  Y  H  N  S  H  I  Q  E  W  E  *  M  K  K  G  K  A  *  K  *  K  E  V  K  L  S  *  R </first_frame>
            <second_frame>  *  F  D  F  K  C  C  A  K  A  S  S  S  F  K  F  N  K  P  T  K  Y  W  T  T  F  I  N  S  W  I  T  K  A  N  M  N  K  P  T  *  K  I  H  T  S  P  K  F  Q  C  V  N  W  A  C  C  L  C  C  W  W  T  R  F  F  P  F  R  *  W  F  N  Y  W  W  N  C  D  W  W  N  S  N  R  W  Q  I  N  W  R  F  Y  N  W  W  N  C  D  R :   W  N  S  D  R  G  Q  I  D  R  G  F  D  N  G  S  G  N  F  G  L  F  G  L  V  R  R  F  T  T  I  A  T  S  K  N  G  S  E  *  R  K  E  K  H  R  N  E  K  K  *  S  Y  L  R   </second_frame>
            <third_frame>   N  L  T  L  S  V  V  Q  R  Q  A  A  A  S  S  S  T  S  P  L  S  I  G  Q  H  S  L  T  A  G  S  P  R  P  I  *  T  S  P  P  K  R  S  T  Q  A  P  S  F  N  V  S  I  G  H  V  A  F  V  V  G  G  Q  G  F  F  P  L  G  D  G  L  I  T  G  G  T  V  T  G  G  I  P  I  G  G  K  S  T  G  G  F  T  I  G  G  T  V  T   : G  G  I  P  I  G  G  K  S  T  G  G  L  T  M  G  V  G  T  L  G  F  L  G  L  *  E  G  L  P  Q  *  P  H  P  R  M  G  V  N  E  E  R  K  S  I  E  M  K  R  S  E  V  I  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0211M21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16082" stop="15893"/>
                    <exon start="15667" stop="15591"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSPPKRSTQAPSFNVSIGHVAFVVGGQGFFPLGDGLITGGTVTGGIPIGGKSTGGFTIGGTVTGGIPIGGKSTGGLTMGVGTLGFLGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0211M21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15981" stop="15893"/>
                    <exon start="15667" stop="15547"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WFNYWWNCDWWNSNRWQINWRFYNWWNCDRWNSDRGQIDRGFDNGSGNFGLFGLVRRFTTIATSKNGSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="17103" PGL_stop="16599"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17103" e_stop="16599"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="17103" e_stop="16599" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17103" stop="16599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAATTCATTGAAACATGACATTCAAACGATACACTGAAATAATAATAATAGTAATAATGATAATAATAATAATAATTCCATTAAATAACAATTCCACAAAGCCAAAATAAAACAATACATAAAATACAATTTTGAGGGGTGGGGTGGGGTGGAGAGAAATTAAATAAATCATAAATTGGACATCCTTTCATGGCAATCCATGCAATTTCTTCAAATTTCAGATTGGAAACCTGCAATTTAATCAGAATTTAAATTAATAATAAGTTTAATTAACAATAAAAATACGTAGCTAATCCTAGTTACTAACGAATTATTAAAAAATATATGTTTCATTTCGCGATAGATTAGCAGCAAATTTCGTATCTTATTCTTTTTTTTCCCTTTCTGAGAGACCAAATGAATAACAACGCAAGTTTAGATTTAAAATTCAAGGTAAAATCAGGTTTAATATATTTCTATATTATCTATATTTGTTAATATGTAATAACAAGTAACTAATTATAT</gDNA_template>
            <first_frame> P  I  H  *  N  M  T  F  K  R  Y  T  E  I  I  I  I  V  I  M  I  I  I  I  I  I  P  L  N  N  N  S  T  K  P  K  *  N  N  T  *  N  T  I  L  R  G  G  V  G  W  R  E  I  K  *  I  I  N  W  T  S  F  H  G  N  P  C  N  F  F  K  F  Q  I  G  N  L  Q  F  N  Q  N  L  N  *  *  *  V  *  L  T  I  K  I  R  S  *  S  *  L  L  T  N  Y  *  K  I  Y  V  S  F  R  D  R  L  A  A  N  F  V  S  Y  S  F  F  S  L  S  E  R  P  N  E  *  Q  R  K  F  R  F  K  I  Q  G  K  I  R  F  N  I  F  L  Y  Y  L  Y  L  L  I  C  N  N  K  *  L  I  I  </first_frame>
            <second_frame>  Q  F  I  E  T  *  H  S  N  D  T  L  K  *  *  *  *  *  *  *  *  *  *  *  *  F  H  *  I  T  I  P  Q  S  Q  N  K  T  I  H  K  I  Q  F  *  G  V  G  W  G  G  E  K  L  N  K  S  *  I  G  H  P  F  M  A  I  H  A  I  S  S  N  F  R  L  E  T  C  N  L  I  R  I  *  I  N  N  K  F  N  *  Q  *  K  Y  V  A  N  P  S  Y  *  R  I  I  K  K  Y  M  F  H  F  A  I  D  *  Q  Q  I  S  Y  L  I  L  F  F  P  F  L  R  D  Q  M  N  N  N  A  S  L  D  L  K  F  K  V  K  S  G  L  I  Y  F  Y  I  I  Y  I  C  *  Y  V  I  T  S  N  *  L  Y </second_frame>
            <third_frame>   N  S  L  K  H  D  I  Q  T  I  H  *  N  N  N  N  S  N  N  D  N  N  N  N  N  S  I  K  *  Q  F  H  K  A  K  I  K  Q  Y  I  K  Y  N  F  E  G  W  G  G  V  E  R  N  *  I  N  H  K  L  D  I  L  S  W  Q  S  M  Q  F  L  Q  I  S  D  W  K  P  A  I  *  S  E  F  K  L  I  I  S  L  I  N  N  K  N  T  *  L  I  L  V  T  N  E  L  L  K  N  I  C  F  I  S  R  *  I  S  S  K  F  R  I  L  F  F  F  F  P  F  *  E  T  K  *  I  T  T  Q  V  *  I  *  N  S  R  *  N  Q  V  *  Y  I  S  I  L  S  I  F  V  N  M  *  *  Q  V  T  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0211M21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="19486" PGL_stop="19327"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19486" e_stop="19327"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19486" e_stop="19327" e_length="160"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19486" stop="19327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTGGAACTGGCTCGTGCTGCAGCAAGTGAAGATCCATCCATAAGCGGTCTTACCAAAACAATGCAAGAGGAGTTTGATAAATACTGGAAGAGTTGTTGTCTAATATTAGCTATTGCCGTTGTAATGGATCCACGCTTCAAAATGAAACTTGTAGAA</gDNA_template>
            <first_frame> S  I  G  T  G  S  C  C  S  K  *  R  S  I  H  K  R  S  Y  Q  N  N  A  R  G  V  *  *  I  L  E  E  L  L  S  N  I  S  Y  C  R  C  N  G  S  T  L  Q  N  E  T  C  R  </first_frame>
            <second_frame>  Q  L  E  L  A  R  A  A  A  S  E  D  P  S  I  S  G  L  T  K  T  M  Q  E  E  F  D  K  Y  W  K  S  C  C  L  I  L  A  I  A  V  V  M  D  P  R  F  K  M  K  L  V  E </second_frame>
            <third_frame>   N  W  N  W  L  V  L  Q  Q  V  K  I  H  P  *  A  V  L  P  K  Q  C  K  R  S  L  I  N  T  G  R  V  V  V  *  Y  *  L  L  P  L  *  W  I  H  A  S  K  *  N  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0211M21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="23693" PGL_stop="19491"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23693" e_stop="23515"/>
            <exon e_start="21623" e_stop="19491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="23693" e_stop="23515" e_length="179"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23514" i_stop="21624" i_length="1891"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21623" e_stop="19491" e_length="2133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23693" stop="23515"/>
              <exon start="21623" stop="20870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20936" stop="19491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319966" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAATTCTCTTTTCCTCTCTCTCTCTTCTTTCTCTCTCCTCCAGCTACGGCCGAAAACCTAGATCTGATTCACTACCGGAGCCTGAAAAACTCGTCGGCTTCGAAATTCCTATCTGGGTTTTGCTCAGAATTGAATTTCGGTAATTGGGTTCTTCTCAAAATTCAAAATTTCCAACAG : CCTTGAGCTTCTGGATATTGATGGCAACCCCAGAAACCGCAGCTCCTCCAGCAACCCCTACTGAGAATAATGAGATGGTGCCGAAAAATGAGATGATACATGAGCATGGTGATGAGATGGTGCCGCAAAATGAGATGATACATGAGCATGGTGATGAGATGGTGCCGCAAAATGAGATGATACATGAGCAAAGCCATGAGATTGTGCCGGAAAATGAGATGCAAAATGAGATGATACATGAGATTGTGCCGGAAAATGAGATGCAAAATGAGATGATACATGAGCACAGCCATGACATTGTGCCTGAAAATGAGATGCAAAATGAGCACAGCCATGAGATTATGCCGGAAAATGAGATGATACGTGAGCACAGCCATGAGATTGTGCGGGAAAATGAGATGATACCTGAGCACAATCATGAGATAGTGCCGGAAAATGAGATGATACATGAGTGCAGTCACGAGACAGTGCCACAAAATGAGATGGTACATGAGCATAGTCATGAAATGGTGCCAGATAATGAGATGACACATGAGCACACTCACGAGATGGTGCCGGAAAATGAGATGACACATGATCATAATCACGAGATGGTGCAGGAAAATGAGATGACACATGAGCATAATCACGAGATGGTGCCGGAAAATGAGATGATGCATGAACATGGTCATGAGATGGTGCCGGAACATGAGATGATGCATGAACATAGTCATGAGATGATGCCGGAACATGAGATGATGCATGAACATCATATGGTGCTTGGGCATGAGATAGTCCCTAGCAATGAGATGGTCCCGGATGATGAGATGATCCCACTAAATGAGATGGTCCTTGCTGAACCACAACCCAACTATATAGAAACACCTCCAAACAATCCAGAAACACAGCCCAGCAAGCGTAGGAAGAAGAAGTCAATAGTTTGGGAACACTTCACCATTGAAAATGTCGGCGGTGGAACTAGAAGGGCACAATGTAAGCAGTGCAAGCAATCATTTGCATATAGTACAGGTTCAAAAGTAGCTGGCACTAGTCACCTGAAACGCCATATTGCAAAAGGAACCTGTCCAGTTGTCCTACGTAACCAACAGAATAATCAATTGAGCCCATATAGTACACCTCCTAAGATGAGTGGATATGGTGGTAGTACTGATGCACCAAAACGGCGTTATAGGACTGCATCTTCTCCTTACCTTGCTTTTGATCCTGACCGGTGCCGTCAAGAGATCTCTAAGATGATCATCATGCACGACTATCCCCTTCACATGGTTGAGCATCCAGGCTTTCTTGCTTTTGTGCAGAATCTTCAACCTCGTTTTGATATGGTGAGCTTCAACACTGTGCAAGGAGATTGTGTGGCAACTTATCTTAGAGAGAAGCAAGCCATTCAGAAGGTCATTGAGGGAGTGCCTGGGCGTATCTGCTTAACGCTAGATATGTGGTCCTCCTGCTACACTGTGGGCTATGTGTTCATAACCGGGCAGTATATTGACAGTGAGTGGAAAATTCACAGGAAAATACTCAATATCATTATGGAACCATATCCAGATTCTGACACGGCTTTCAGCCATGCTGTTGCTGCTTGCCTTTCTGACTGGAGTATGGAAGGTAAGTTGTTTTCTGTCACTATTAATCAACCGTTGGGTGATGCTTCTGTTGATAATCTTAGAGCTTTACTATCTGTGAAGAACCCTCTTGTGCTCAACGGTCAGTTGTTGGTCGGAAGTTGTCTTGCTCGAACTTTAAGCAGCATTGCCCAAGGTGCATTTAATTTTTTGCATGAAACTGTTAAGAAAGTAAGAGATAGCGTCAAGTACGTGAAAACATCAGAATTTCACGAGGAAAAGTTTATTGAGCTCAAACAGCAGCTTCAAGTGCCAAGCACAAAGACTTTGGCTCTTGATGACCAGACTCAATGGAACACCACATATGAGATGTTGTTAGCTGCATCAGAGTTAAAGGAAGTGTTTTCATGCTTGGATACATCTGATCCCGATTACAAGGATGCCCTGTCAATGGATGATTGGAAGCAAGTTGAGGTTCTTTGTACTTACTTGAAGATCCTCTTTGACACTGCCAATCTTCTGACTGCACCAACAATTCCAACAACCAACACATTCTTCCATGAAGCATGGA</gDNA_template>
            <first_frame> P  N  S  L  F  L  S  L  S  S  F  S  L  L  Q  L  R  P  K  T  *  I  *  F  T  T  G  A  *  K  T  R  R  L  R  N  S  Y  L  G  F  A  Q  N  *  I  S  V  I  G  F  F  S  K  F  K  I  S  N  S :   L  E  L  L  D  I  D  G  N  P  R  N  R  S  S  S  S  N  P  Y  *  E  *  *  D  G  A  E  K  *  D  D  T  *  A  W  *  *  D  G  A  A  K  *  D  D  T  *  A  W  *  *  D  G  A  A  K  *  D  D  T  *  A  K  P  *  D  C  A  G  K  *  D  A  K  *  D  D  T  *  D  C  A  G  K  *  D  A  K  *  D  D  T  *  A  Q  P  *  H  C  A  *  K  *  D  A  K  *  A  Q  P  *  D  Y  A  G  K  *  D  D  T  *  A  Q  P  *  D  C  A  G  K  *  D  D  T  *  A  Q  S  *  D  S  A  G  K  *  D  D  T  *  V  Q  S  R  D  S  A  T  K  *  D  G  T  *  A  *  S  *  N  G  A  R  *  *  D  D  T  *  A  H  S  R  D  G  A  G  K  *  D  D  T  *  S  *  S  R  D  G  A  G  K  *  D  D  T  *  A  *  S  R  D  G  A  G  K  *  D  D  A  *  T  W  S  *  D  G  A  G  T  *  D  D  A  *  T  *  S  *  D  D  A  G  T  *  D  D  A  *  T  S  Y  G  A  W  A  *  D  S  P  *  Q  *  D  G  P  G  *  *  D  D  P  T  K  *  D  G  P  C  *  T  T  T  Q  L  Y  R  N  T  S  K  Q  S  R  N  T  A  Q  Q  A  *  E  E  E  V  N  S  L  G  T  L  H  H  *  K  C  R  R  W  N  *  K  G  T  M  *  A  V  Q  A  I  I  C  I  *  Y  R  F  K  S  S  W  H  *  S  P  E  T  P  Y  C  K  R  N  L  S  S  C  P  T  *  P  T  E  *  S  I  E  P  I  *  Y  T  S  *  D  E  W  I  W  W  *  Y  *  C  T  K  T  A  L  *  D  C  I  F  S  L  P  C  F  *  S  *  P  V  P  S  R  D  L  *  D  D  H  H  A  R  L  S  P  S  H  G  *  A  S  R  L  S  C  F  C  A  E  S  S  T  S  F  *  Y  G  E  L  Q  H  C  A  R  R  L  C  G  N  L  S  *  R  E  A  S  H  S  E  G  H  *  G  S  A  W  A  Y  L  L  N  A  R  Y  V  V  L  L  L  H  C  G  L  C  V  H  N  R  A  V  Y  *  Q  *  V  E  N  S  Q  E  N  T  Q  Y  H  Y  G  T  I  S  R  F  *  H  G  F  Q  P  C  C  C  C  L  P  F  *  L  E  Y  G  R  *  V  V  F  C  H  Y  *  S  T  V  G  *  C  F  C  *  *  S  *  S  F  T  I  C  E  E  P  S  C  A  Q  R  S  V  V  G  R  K  L  S  C  S  N  F  K  Q  H  C  P  R  C  I  *  F  F  A  *  N  C  *  E  S  K  R  *  R  Q  V  R  E  N  I  R  I  S  R  G  K  V  Y  *  A  Q  T  A  A  S  S  A  K  H  K  D  F  G  S  *  *  P  D  S  M  E  H  H  I  *  D  V  V  S  C  I  R  V  K  G  S  V  F  M  L  G  Y  I  *  S  R  L  Q  G  C  P  V  N  G  *  L  E  A  S  *  G  S  L  Y  L  L  E  D  P  L  *  H  C  Q  S  S  D  C  T  N  N  S  N  N  Q  H  I  L  P  *  S  M   </first_frame>
            <second_frame>  P  I  L  F  S  S  L  S  L  L  S  L  S  S  S  Y  G  R  K  P  R  S  D  S  L  P  E  P  E  K  L  V  G  F  E  I  P  I  W  V  L  L  R  I  E  F  R  *  L  G  S  S  Q  N  S  K  F  P  T   : A  L  S  F  W  I  L  M  A  T  P  E  T  A  A  P  P  A  T  P  T  E  N  N  E  M  V  P  K  N  E  M  I  H  E  H  G  D  E  M  V  P  Q  N  E  M  I  H  E  H  G  D  E  M  V  P  Q  N  E  M  I  H  E  Q  S  H  E  I  V  P  E  N  E  M  Q  N  E  M  I  H  E  I  V  P  E  N  E  M  Q  N  E  M  I  H  E  H  S  H  D  I  V  P  E  N  E  M  Q  N  E  H  S  H  E  I  M  P  E  N  E  M  I  R  E  H  S  H  E  I  V  R  E  N  E  M  I  P  E  H  N  H  E  I  V  P  E  N  E  M  I  H  E  C  S  H  E  T  V  P  Q  N  E  M  V  H  E  H  S  H  E  M  V  P  D  N  E  M  T  H  E  H  T  H  E  M  V  P  E  N  E  M  T  H  D  H  N  H  E  M  V  Q  E  N  E  M  T  H  E  H  N  H  E  M  V  P  E  N  E  M  M  H  E  H  G  H  E  M  V  P  E  H  E  M  M  H  E  H  S  H  E  M  M  P  E  H  E  M  M  H  E  H  H  M  V  L  G  H  E  I  V  P  S  N  E  M  V  P  D  D  E  M  I  P  L  N  E  M  V  L  A  E  P  Q  P  N  Y  I  E  T  P  P  N  N  P  E  T  Q  P  S  K  R  R  K  K  K  S  I  V  W  E  H  F  T  I  E  N  V  G  G  G  T  R  R  A  Q  C  K  Q  C  K  Q  S  F  A  Y  S  T  G  S  K  V  A  G  T  S  H  L  K  R  H  I  A  K  G  T  C  P  V  V  L  R  N  Q  Q  N  N  Q  L  S  P  Y  S  T  P  P  K  M  S  G  Y  G  G  S  T  D  A  P  K  R  R  Y  R  T  A  S  S  P  Y  L  A  F  D  P  D  R  C  R  Q  E  I  S  K  M  I  I  M  H  D  Y  P  L  H  M  V  E  H  P  G  F  L  A  F  V  Q  N  L  Q  P  R  F  D  M  V  S  F  N  T  V  Q  G  D  C  V  A  T  Y  L  R  E  K  Q  A  I  Q  K  V  I  E  G  V  P  G  R  I  C  L  T  L  D  M  W  S  S  C  Y  T  V  G  Y  V  F  I  T  G  Q  Y  I  D  S  E  W  K  I  H  R  K  I  L  N  I  I  M  E  P  Y  P  D  S  D  T  A  F  S  H  A  V  A  A  C  L  S  D  W  S  M  E  G  K  L  F  S  V  T  I  N  Q  P  L  G  D  A  S  V  D  N  L  R  A  L  L  S  V  K  N  P  L  V  L  N  G  Q  L  L  V  G  S  C  L  A  R  T  L  S  S  I  A  Q  G  A  F  N  F  L  H  E  T  V  K  K  V  R  D  S  V  K  Y  V  K  T  S  E  F  H  E  E  K  F  I  E  L  K  Q  Q  L  Q  V  P  S  T  K  T  L  A  L  D  D  Q  T  Q  W  N  T  T  Y  E  M  L  L  A  A  S  E  L  K  E  V  F  S  C  L  D  T  S  D  P  D  Y  K  D  A  L  S  M  D  D  W  K  Q  V  E  V  L  C  T  Y  L  K  I  L  F  D  T  A  N  L  L  T  A  P  T  I  P  T  T  N  T  F  F  H  E  A  W  </second_frame>
            <third_frame>   Q  F  S  F  P  L  S  L  F  F  L  S  P  P  A  T  A  E  N  L  D  L  I  H  Y  R  S  L  K  N  S  S  A  S  K  F  L  S  G  F  C  S  E  L  N  F  G  N  W  V  L  L  K  I  Q  N  F  Q  Q  :  P  *  A  S  G  Y  *  W  Q  P  Q  K  P  Q  L  L  Q  Q  P  L  L  R  I  M  R  W  C  R  K  M  R  *  Y  M  S  M  V  M  R  W  C  R  K  M  R  *  Y  M  S  M  V  M  R  W  C  R  K  M  R  *  Y  M  S  K  A  M  R  L  C  R  K  M  R  C  K  M  R  *  Y  M  R  L  C  R  K  M  R  C  K  M  R  *  Y  M  S  T  A  M  T  L  C  L  K  M  R  C  K  M  S  T  A  M  R  L  C  R  K  M  R  *  Y  V  S  T  A  M  R  L  C  G  K  M  R  *  Y  L  S  T  I  M  R  *  C  R  K  M  R  *  Y  M  S  A  V  T  R  Q  C  H  K  M  R  W  Y  M  S  I  V  M  K  W  C  Q  I  M  R  *  H  M  S  T  L  T  R  W  C  R  K  M  R  *  H  M  I  I  I  T  R  W  C  R  K  M  R  *  H  M  S  I  I  T  R  W  C  R  K  M  R  *  C  M  N  M  V  M  R  W  C  R  N  M  R  *  C  M  N  I  V  M  R  *  C  R  N  M  R  *  C  M  N  I  I  W  C  L  G  M  R  *  S  L  A  M  R  W  S  R  M  M  R  *  S  H  *  M  R  W  S  L  L  N  H  N  P  T  I  *  K  H  L  Q  T  I  Q  K  H  S  P  A  S  V  G  R  R  S  Q  *  F  G  N  T  S  P  L  K  M  S  A  V  E  L  E  G  H  N  V  S  S  A  S  N  H  L  H  I  V  Q  V  Q  K  *  L  A  L  V  T  *  N  A  I  L  Q  K  E  P  V  Q  L  S  Y  V  T  N  R  I  I  N  *  A  H  I  V  H  L  L  R  *  V  D  M  V  V  V  L  M  H  Q  N  G  V  I  G  L  H  L  L  L  T  L  L  L  I  L  T  G  A  V  K  R  S  L  R  *  S  S  C  T  T  I  P  F  T  W  L  S  I  Q  A  F  L  L  L  C  R  I  F  N  L  V  L  I  W  *  A  S  T  L  C  K  E  I  V  W  Q  L  I  L  E  R  S  K  P  F  R  R  S  L  R  E  C  L  G  V  S  A  *  R  *  I  C  G  P  P  A  T  L  W  A  M  C  S  *  P  G  S  I  L  T  V  S  G  K  F  T  G  K  Y  S  I  S  L  W  N  H  I  Q  I  L  T  R  L  S  A  M  L  L  L  L  A  F  L  T  G  V  W  K  V  S  C  F  L  S  L  L  I  N  R  W  V  M  L  L  L  I  I  L  E  L  Y  Y  L  *  R  T  L  L  C  S  T  V  S  C  W  S  E  V  V  L  L  E  L  *  A  A  L  P  K  V  H  L  I  F  C  M  K  L  L  R  K  *  E  I  A  S  S  T  *  K  H  Q  N  F  T  R  K  S  L  L  S  S  N  S  S  F  K  C  Q  A  Q  R  L  W  L  L  M  T  R  L  N  G  T  P  H  M  R  C  C  *  L  H  Q  S  *  R  K  C  F  H  A  W  I  H  L  I  P  I  T  R  M  P  C  Q  W  M  I  G  S  K  L  R  F  F  V  L  T  *  R  S  S  L  T  L  P  I  F  *  L  H  Q  Q  F  Q  Q  P  T  H  S  S  M  K  H  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0211M21.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23548" stop="23515"/>
                    <exon start="21623" stop="19492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2166</number_coding_nucleotides>
                  <number_encoded_amino_acids>722</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGSSQNSKFPTALSFWILMATPETAAPPATPTENNEMVPKNEMIHEHGDEMVPQNEMIHEHGDEMVPQNEMIHEQSHEIVPENEMQNEMIHEIVPENEMQNEMIHEHSHDIVPENEMQNEHSHEIMPENEMIREHSHEIVRENEMIPEHNHEIVPENEMIHECSHETVPQNEMVHEHSHEMVPDNEMTHEHTHEMVPENEMTHDHNHEMVQENEMTHEHNHEMVPENEMMHEHGHEMVPEHEMMHEHSHEMMPEHEMMHEHHMVLGHEIVPSNEMVPDDEMIPLNEMVLAEPQPNYIETPPNNPETQPSKRRKKKSIVWEHFTIENVGGGTRRAQCKQCKQSFAYSTGSKVAGTSHLKRHIAKGTCPVVLRNQQNNQLSPYSTPPKMSGYGGSTDAPKRRYRTASSPYLAFDPDRCRQEISKMIIMHDYPLHMVEHPGFLAFVQNLQPRFDMVSFNTVQGDCVATYLREKQAIQKVIEGVPGRICLTLDMWSSCYTVGYVFITGQYIDSEWKIHRKILNIIMEPYPDSDTAFSHAVAACLSDWSMEGKLFSVTINQPLGDASVDNLRALLSVKNPLVLNGQLLVGSCLARTLSSIAQGAFNFLHETVKKVRDSVKYVKTSEFHEEKFIELKQQLQVPSTKTLALDDQTQWNTTYEMLLAASELKEVFSCLDTSDPDYKDALSMDDWKQVEVLCTYLKILFDTANLLTAPTIPTTNTFFHEAW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44982" PGL_stop="43737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44982" e_stop="44788"/>
            <exon e_start="44360" e_stop="43864"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.759" acc_prob="0.970" e_score="0.903"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="44982" e_stop="44788" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.759" acc_prob="0.970">
            <gDNA_intron_boundary i_start="44787" i_stop="44361" i_length="427"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="44360" e_stop="43864" e_length="497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44982" stop="44788"/>
              <exon start="44360" stop="43864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333723" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTCACTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAG : AAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACGATTATTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTACAAGATGATCTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATACATG</gDNA_template>
            <first_frame> E  Q  I  S  L  N  R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  N  H  *  K  F  F  T  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  :  K  K  K  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  V  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  R  E  C  S  C  Y  V  R  *  N  F  G  *  *  T  I  I  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  T  R  *  S  V  Q  C  V  Q  Q  C  K  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  T   </first_frame>
            <second_frame>  N  R  F  H  *  T  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  L  I  T  E  N  F  S  L  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R :   K  K  K  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  V  A  L  A  L  A  K  K  P  A  K  F  S  G  V  D  F  K  R  W  *  Q  K  M  F  F  Y  L  T  M  L  S  L  Q  K  F  I  K  E  N  V  P  V  M  S  D  E  T  L  A  D  E  R  L  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  N  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  </second_frame>
            <third_frame>   T  D  F  T  E  Q  T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  *  S  L  K  I  F  H  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  E  V  *   : E  K  K  R  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  W  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  C  *  V  C  R  S  S  S  K  R  M  F  L  L  C  Q  M  K  L  W  L  M  N  D  Y  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  Y  K  M  I  C  T  M  C  T  T  M  Q  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  Y  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0211M21.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44215" stop="43865"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKMFFYLTMLSLQKFIKENVPVMSDETLADERLLVTEAWTHSDFLCKNYILSGLQDDLYNVYNNAKTSKELWDALEKKYKTEDAGMKKFIVAKFLDFKMIDSKTVVTQVQELQVIIH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44964" e_stop="43737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="44964" e_stop="43737" e_length="1228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44964" stop="43737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTCACTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTTTGTTTATTAACTTTATAAATACAAGTTGTTGTAAGAATAACAATCTTAAGAAATTTAACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAACCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGTTGCCTTAGCACTGGCTAAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGTAGCAAAAGATGTTCTTCTATCTCACTATGTTGAGTCTGCAGAAGTTCATCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTTTGGCTGATGAACGATTATTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTACAAGATGATCTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATACATGATCTCCTTGCTGAAGGATTAATTATGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAATGAGATGACTGTTGA</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  N  H  *  K  F  F  T  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  C  I  L  Y  Y  F  L  L  H  L  I  S  V  S  V  F  V  Y  *  L  Y  K  Y  K  L  L  *  E  *  Q  S  *  E  I  *  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  V  F  Y  S  A  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  C  *  Y  F  K  Y  L  I  Y  L  P  F  V  T  E  K  K  R  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  W  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  C  *  V  C  R  S  S  S  K  R  M  F  L  L  C  Q  M  K  L  W  L  M  N  D  Y  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  Y  K  M  I  C  T  M  C  T  T  M  Q  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  Y  M  I  S  L  L  K  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  M  R  *  L  L  </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  L  I  T  E  N  F  S  L  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  I  L  V  F  Y  I  I  F  C  F  I  L  F  L  F  L  F  L  F  I  N  F  I  N  T  S  C  C  K  N  N  N  L  K  K  F  N  S  F  C  I  *  G  F  W  R  L  K  P  L  W  F  S  T  L  L  E  F  L  K  F  I  R  L  T  I  K  R  T  *  K  L  Y  R  *  T  R  N  S  L  C  K  D  L  F  F  T  V  S  I  L  N  T  *  F  I  C  H  L  *  Q  K  K  K  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  V  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  R  E  C  S  C  Y  V  R  *  N  F  G  *  *  T  I  I  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  T  R  *  S  V  Q  C  V  Q  Q  C  K  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  T  *  S  P  C  *  R  I  N  Y  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  T  Q  T  Q  *  D  D  C  * </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  *  S  L  K  I  F  H  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  L  Y  S  I  L  F  S  A  S  S  Y  F  C  F  C  F  C  L  L  T  L  *  I  Q  V  V  V  R  I  T  I  L  R  N  L  T  V  S  V  F  E  V  S  G  D  *  N  L  Y  G  F  L  L  C  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  N  F  I  V  K  P  E  T  V  C  V  K  I  C  S  L  L  L  V  F  *  I  L  N  L  S  A  I  C  D  R  K  K  K  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  V  A  L  A  L  A  K  K  P  A  K  F  S  G  V  D  F  K  R  W  *  Q  K  M  F  F  Y  L  T  M  L  S  L  Q  K  F  I  K  E  N  V  P  V  M  S  D  E  T  L  A  D  E  R  L  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  N  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E  G  L  I  M  N  D  A  F  Q  V  A  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  H  K  R  N  E  M  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0211M21.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44215" stop="43739"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKMFFYLTMLSLQKFIKENVPVMSDETLADERLLVTEAWTHSDFLCKNYILSGLQDDLYNVYNNAKTSKELWDALEKKYKTEDAGMKKFIVAKFLDFKMIDSKTVVTQVQELQVIIHDLLAEGLIMNDAFQVAAIIEKLPPLWKDFKNYLKHKRNEMTV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0211M21.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44735" stop="44538"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITLGTVRGLNFLRTHSSFCGLGLILVFYIIFCFILFLFLFLFINFINTSCCKNNNLKKFNSFCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 58448 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 5844 bytes was the average size of a spliced alignment
$ 13112 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1873 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 47 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-09 23:58:23
-->
