<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-10 20:56:56"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327862" ref_strand="+" ref_description="SGN-U327862        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:3831665-3832945 FORWARD | Aliases: F14F18.60, F14F18_60(evalue: 9e-18, score=86.7) genbank/nr: Heavy(evalue: 2e-19, score=97.8)">
      <seq>aaaaatggctgacagagttcacccttcagctaagccaaatggcaacgctgccaatattaccggtgccgctgcggcggccgtcaatcccaaagccgccgcgaagccgccgcaatttcctcctccggcggcgaagaaccaaatgtacaacccgaatcgcatcccttaccgaccaactccaactgcctaccaccgacacaatcgccgccgttgcacctgccgccggtgcttctgcttctgttgtttctggtcactcctcttcatctgcaccgtcctcctcctcgccacaatcgccggcgccggtttctacttcctattccgtccaaaacctccggcattctccgtttcctcactcaaaatcatccaattcaaactcaccactacctccgacgacactacacacctcaccgttaagctcaatctcacactctccactaaaaaccctaacaaaaagctgatttacagttacgatccaatttccttaactgtaaactcgaattcagttctactagctaatggatcgttcacaggattcaacagcggtcctaataacatcacaatcattcactcaactctatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="6363" stop="7542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6663" g_stop="7242" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-U327862" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6663" e_stop="7242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATG</genome_strand>
        <mrna_strand>AAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329444" ref_strand="-" ref_description="SGN-U329444        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G17620.1 | Symbol: None | expressed protein | chr1:6062227-6063284 FORWARD | Aliases: F11A6.25, F1L3.32, F1L3_32 (evalue: 5e-14, score=75.1) genbank/nr: Heavy(evalue: 5e-19, score=97.8)">
      <seq>tgggtacgggcccccctcgagtttttttttttttctttttttttttttttttttttttttttttttttttttattaaaaataatatatcaaacccttttttttttttttgctttttgggatattataattatatcaaacactatttttccccaaaaaaaatctacataaaaccattttccccctcaatttgcctcatctctactaaataaatagtatagtataatattattatgaataaattgcaaaaatcaagcaaataattgataaataaaaataaaaacaacgaaaaataagttaaagagtaaaaaaaaaaaaactacatttaactatctcgattttttgaattttctatccaaattatcacgtgtttgctttttctatccgaattataaccaattatttatcaaaacatacgtaagctatagccattcacgttttctacctgaattattaccgtattaaggtagaaaaaagtgaaaacgtatggttaacgtgtgattcgataaatatttgatcatacttcaaataaaaaaggacctccacaccgataaataattcatcgagataatttagatgtgtttttcgcccttcgctcgtcccgaaaaaatgaatttagaaggtccattttaagatcttcatacgtaaatcagccttacatttagcatttgtagttgaagccaccgccggagttttccccgtcggaattcttccatggattccgtcacaagtaactctgatcccgacttccttacttttcaatttatccattttcgctagcaccattgtatccaacaagatcttcatcggtaatccattttttcttttcagatctgatttcaacgatgaaattgaatccgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42276" stop="6960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9583" g_stop="9515" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.536"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9514" i_stop="8053" i_length="1462">
            <donor d_prob="0.000" d_score="0.58"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8052" g_stop="7260" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="860" r_length="792" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U329444" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329444" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9583" e_stop="9515"/>
          <exon e_start="8052" e_stop="7260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAGATTTATCTAACCAATCATGATTCATGCCGAGTAGGCTCTCTAATCGAGAAATACGAGAAGCAAATTGTTGTGTGGATGAATTAATATCTATACTTAAAAAGAGGTAGATTTTGTATCACTTCATCTAGTCGTATGAAACTCGCGAATACCTATCACTTTTGGAAAGATTTGAAATTCTTCATGTAGGGTCTAAAAATTTGATATTTTTTTGTCTAGTTACTTGTTTTTCAACATTTCTTTGCCTAAATTGTTGACCGAGGTTCCGCGCCTAGTGATTTTCCTTTCAAAAAGTCTACACGTGATTTTCCTTTATCAAGTAGATCCTCAAATATAGAAAGTAAAACTTGCCCGAGTAATTTCGTATAAAAGGTAAAAACCTCTTCAAATCGTTGTTCCTTGCCTAGTCAATCAATTAGAATTCATGTCAGGTAGGTCTTTTAAGATTTGCCCGAACTTACGTTGGGTAGGTCCTCTAATTGAGATCAACTAATTTGGATTCATGCATGTAAGGTCCTCTAATCGAGAAGGTAAAACTTGTTTCTAACCAATCACGATTGTGTAGATCTTCTATTCTAAAGAAGGTACTACGTTTCTAAATAAAGATGAAGAAATCTCATTCATACAATAACTTATGTTGTGTTTAAATAAACCCCTCTATTATAAAGAATATAATACGATTCTGAATAAAAATGAAGAAATCTCATCCACGCAATAACTCTTTAACAATGCTTATACTCAATGTTGTGTTTGAGGTTGATATTATAATGCTTTAGAATGATACATGTAAATGCAAATATACAACGTATGAATTCAATATAACTCAATCGTAAATATACTAAGAATTTCACTAAATACGTACATATTATAAACTATATGAACTCGAAAACATAAATTGATTTCGGCTTTAAATTTTGAACTAGCCTCATAAATACAAAACTATGTGTAAATTAGGAAATAATTAATGACTTAGATTGAGATCCACAATGAAATTAACTAGAGAGTAATTTTCTTTAGTACTTATTAATTATGATTGTCAAATTAACAATAAAGTATCTTATTATAATAAAATAATTATATATAACTGTACTATATCATCAACAAATCTAATGTATCCCCAAATAAGAGTTTGAAAATGCTAGAATATATATTAATTTTACATTTACCATAAAAAGATAAAGATATCTTTAAGATAAATTTTTGAATTAAAGAATATAATAGCAACAAATTGAAATAACAATAAGACAATACGAATAATCGAGACTAAAAAAACAATAATAAAAGTCTAAGTATACAAAATAATAACAAGGATAAAACCACTACTTGGAAAACATAATAAAAATTTACATAAATATAATTATTAAGTCACATTAAAGAAGAATTTATTAAGAATAATATATCAAACTCTTTTTTTTTTTTTTTGCTTTTTGGTATATTATAATTATATCAAACACTATATTTCACCAAAAAAAATCTACATAAAACCATTTTCCCCCTCAATTTGCCTCATCTCTACTAAATAAATAGTATAGTATAATATTATTATGAATAAATTGCAAAAATCAAGCAAATAATTGATAAATAAAAATAAAAACAACGAAAAATAAGTTAAAGAGTAAAAAAAAAAAAACTACATTTAACTATCTCGATTTTTTGAATTTTCTATCCAAATTATCACGTGTTTGCTTTTTCTATCCGAATTATAACCAATTATTTATCAAAACATACGTAAGCTATAGCCATTCACGTTTTCTACCTGAATTATTACCGTATTAAGGTAGAAAAAAGTGAAAACGTATGGTTAACGTGTGATTCGATAAATATTTGATCATACTTCAAATAAAAAAGGACCTCCACACCGATAAATAATTCATCGAGATAATTTAGATGTGTTTTTCGCCCTTCGCTCGTCCCGAAAAAATGAATTTAGAAGGTCCATTTTAAGATCTTCATACGTAAATCAGCCTTACATTTAGCATTTGTAGTTGAAGCCACCGCCGGAGTTTTCCCCGTCGGAATTCTTCCATGGATTCCGTCACAAGTAACTCTGATCCCGACTTCCTTACTTTTCAATTTATCCATTTTCGCTAGCACCATTGTATCCAACAAGATCTTCATCGGTAATCCATTTTTTCTTTTCAGATCTGATTTCAACGATGAAATTGAATCCGCA</genome_strand>
        <mrna_strand>TGGGTACGG-GCCCCCCTCGAGTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTAAAAATAATATATCAAACCCTTTTTTTTTTTTTT-GCTTTTTGGGATATTATAATTATATCAAACACTATTTTTCCCCAAAAAAAATCTACATAAAACCATTTTCCCCCTCAATTTGCCTCATCTCTACTAAATAAATAGTATAGTATAATATTATTATGAATAAATTGCAAAAATCAAGCAAATAATTGATAAATAAAAATAAAAACAACGAAAAATAAGTTAAAGAGTAAAAAAAAAAAAACTACATTTAACTATCTCGATTTTTTGAATTTTCTATCCAAATTATCACGTGTTTGCTTTTTCTATCCGAATTATAACCAATTATTTATCAAAACATACGTAAGCTATAGCCATTCACGTTTTCTACCTGAATTATTACCGTATTAAGGTAGAAAAAAGTGAAAACGTATGGTTAACGTGTGATTCGATAAATATTTGATCATACTTCAAATAAAAAAGGACCTCCACACCGATAAATAATTCATCGAGATAATTTAGATGTGTTTTTCGCCCTTCGCTCGTCCCGAAAAAATGAATTTAGAAGGTCCATTTTAAGATCTTCATACGTAAATCAGCCTTACATTTAGCATTTGTAGTTGAAGCCACCGCCGGAGTTTTCCCCGTCGGAATTCTTCCATGGATTCCGTCACAAGTAACTCTGATCCCGACTTCCTTACTTTTCAATTTATCCATTTTCGCTAGCACCATTGTATCCAACAAGATCTTCATCGGTAATCCATTTTTTCTTTTCAGATCTGATTTCAACGATGAAATTGAATCCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312485" ref_strand="+" ref_description="SGN-U312485        Tomato 200607 #1 [49 ESTs aligned] arabidopsis/peptide: | Symbol: None | eukaryotic translation initiation factor 4A-1 / eIF-4A-1, eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain | chr3:4592263-4594926 REVERSE | Aliases: MDC16.5(evalue: 0, score=771) genbank/nr: gi|19697|emb|CAA43513.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana plumbaginifolia] >gi|1170506|sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 (eIF4A-2) (eIF-4A-2) (evalue: 0, score=811)">
      <seq>tggcggccaaatcggccgaattgctctttcacacaatatcgtcttcctgaactacgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctctgtgagggggaattgttccttccctacaagtagtagtctaatatatttattcagagtgaacaactgcaaattttgtctggtttttgtgttattttgtttttggaagtgtccaaataactttggatttggtggttgttttgaattgtttatttgaactatttttctatgaatgttaggcttttagttaatgttttctaatgtttgatgctatatttatgtcccactgtttcttgctcaatcaatcaaagattcatgttaggttaggtccttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="13622" stop="9129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13319" g_stop="13168" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="177" r_length="155" r_score="0.796"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="246" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="353" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="784" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10353" g_stop="9430" g_length="924"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="1708" r_length="924" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1709" polyA_stop="1724"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U312485" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>1683</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13319" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="9430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCACACAATATTGTCTTCCT-AAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAG</genome_strand>
        <mrna_strand>GCTCTTTCACACAATATCGTCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312489" ref_strand="+" ref_description="SGN-U312489        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | eukaryotic translation initiation factor 4A-1 / eIF-4A-1, eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain | chr3:4592263-4594926 REVERSE | Aliases: MDC16.5(evalue: 7e-75, score=276) genbank/nr: gi|53792733|dbj|BAD53769.1| eukaryotic initiation factor 4A [Oryza sativa (japonica cultivar-group)] >gi|53791892|dbj|BAD54014.1| eukaryotic initiation factor 4A [Oryza sativa (japonica cultivar-group)] (evalue: 2e-74, score=281)">
      <seq>tgatctttacgagaccttggccatcacccagagcgtcatctttgttaacactaggcgaaaggttgactggctcactgataaaatgcgtggacgtgaccacacagtatctgcaactcatggagacatggatcagaacacaagagatatcatcatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctcccttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgtcaccaaggatgatgaaaggatgctttttgacatacagaagttttacaacgtcgtaattgaggagctcccagccaatgttgctgatctcctctaaggcgatttttggtatatttattcttagatttagtatcagtttgtactagacttggaattaggaaatgctggtagccatggtttgccacagcaccagttcctttcctgattcaaatgaaaccttttttttttttttgcaaattttgtttggtttgtcattttatacctttaaagtatccaaataactttgtatttggtgttgtttgaattgtttaattgatctatttccctatggaaggtaaagcttttagttggattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="15991" stop="14704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15691" g_stop="15005" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="727"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U312489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15691" e_stop="15005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGATT</genome_strand>
        <mrna_strand>TGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312488" ref_strand="+" ref_description="SGN-U312488        Tomato 200607 #1 [23 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative [Arabidopsis thaliana] (TAIR:At1g72730.1); similar to eukaryotic translation initiation factor 4A-2 / eIF-4A-2 [Arabidopsis thaliana] (TAIR:At1g54270.1); similar to unnamed protein product [Nicotiana tabacum] (GB:CAA55737.1); similar to translation initiation factor eIF-4A.11 - common tobacco (GB:S52018); similar to unnamed protein product [Nicotiana tabacum] (GB:CAA55742.1); similar to translation initiation factor (eIF-4A) [Nicotiana tabacum] (GB:CAA55641.1); similar to translation initiation factor eIF-4A.14 - common tobacco (GB:S52023); contains InterPro domain ATP-dependent helicase, DEAD-box (InterPro:IPR000629); contains InterPro domain Helicase, C-terminal (InterPro:IPR001650); contains InterPro domain DEAD/DEAH box helicase (InterPro:IPR001410) | chr3:4592263-4594969 REVERSE | Aliases: None(evalue: 2e-140, score=495) genbank/nr: gi|19697|emb|CAA43513.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana plumbaginifolia] >gi|1170506|sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 (eIF4A-2) (eIF-4A-2) (evalue: 3e-149, score=530)">
      <seq>gtagatccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagttttatgtcaatgtcgataaagaagagtggaagcttgaaacactatgtgatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19730" stop="15384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19430" g_stop="19335" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="157" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="264" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17042" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="695" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15897" g_stop="15684" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="909" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U312488" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19430" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17042"/>
          <exon e_start="15897" e_stop="15684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTT</genome_strand>
        <mrna_strand>GTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAAGAAGAGTGGAAGCTTGAAACACTATGTGATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344044" ref_strand="+" ref_description="SGN-U344044        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G12000.1 | Symbol: None | similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:At4g31230.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:At1g16760.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:At1g78940.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:At2g24370.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:At5g26150.1); similar to putative serine threonine kinase [Oryza sativa (japonica cultivar-group)] (GB:XP_468172.1); similar to serine threonine kinase [Zea mays] (GB:AAL59227.1); similar to serine threonine kinase 1 [Zea mays] (GB:AAK73111.1); similar to serine threonine kinase 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53152.1); similar to putative serine threonine kinase [Oryza sativa (japonica cultivar-group)] (GB:XP_463352.1); contains InterPro domain Serine/threonine protein kinase, active site (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase (InterPro:IPR002290); contains InterPro domain Protein kinase (InterPro:IPR000719) | chr5:3873907-3876781 REVERSE | Aliases: F14F18.170, F14F18_170 (evalue: 3e-69, score=259) genbank/nr: kinase(evalue: 2e-67, score=259)">
      <seq>ttgcaaagaagcggtcgtggccaaccaagcggctgatgagcttaataaatggaaaattgaagaagctcgcaagttcgaacaagcgcgttttgctgaagaggcggctcttgcaattgctgagaccgaaaaggcgaaatgcagagctgctatcgaagctgctaagaaagcacaaaagatggctgaaatagaagcgcaaagaaggaagtatgcagagttgaaagctaagcgagaggcagaaaaaaagaaacaagcaattaatgttcgatctcagaatgatatacgttataggaagtatacaatagaagagattgaggcagccaccaaaaagttctcaaatgcacaaaaaattggagaaggtggatatggacctgtttttaagggtaaactagatcacacacctgttgccattaaagttctgagtcctgatgctgcacaagggaagaaacagttccaacaagaggttgaggtcctcagtctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="24776" stop="22819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24476" g_stop="24446" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24445" i_stop="23974" i_length="472">
            <donor d_prob="0.229" d_score="0.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23973" g_stop="23545" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="460" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23544" i_stop="23139" i_length="406">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23138" g_stop="23119" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="480" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U344044" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24476" e_stop="24446"/>
          <exon e_start="23973" e_stop="23545"/>
          <exon e_start="23138" e_stop="23119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAAGAAGCGGTCGTGGCCAACCAAGCGGTAATAGCCCATTTTCTAACTGCCTAGAACCATAAAGATGAACACCATCTAAAACAGCAAAAAAGAGAGAAATTTATGGGCCCAACTATCTGAAATGTATTAAGCAAATCATAATTTCAAGAAACCTTGTTTTATAGTTCAATGATTTAAAAGATATTATAAGGGAACTCATGTGTCTACAAATTTTATCCATGCGTAGAACGAAGCGGCTCCCAACTCCCAAAACTACATGAATGCATTCTGCATTTTTATGGGAAGTTATTCCTCCAAGGAATATATAAGGTCTGAAATAATTGTTATTAGTTAGTACAATTCTCATCTATATGTGAGTAAGAAATAGCATTGCATCAGTTGTTTACGTTTCTGAAAAACAAGTTACAAATTTATGACATCAAGCTTAAGGACCAAGGCTTTCTCCCTCTTCTTATCCAGGAGTAAGTTTTTCATGTGTCATATTTCTACTGAGTTTCAGGCTGATGAGCTTAATAAATGGAAAATTGAAGAAGCTCGCAAGTTCGAACAAGCGCGTTTTGCTGAAGAGGCGGCTCTTGCAATTGCTGAGACCGAAAAGGCGAAATGCAGAGCTGCTATCGAAGCTGCTAAGAAAGCACAAAAGATGGCTGAAATAGAAGCGCAAAGAAGGAAGTATGCAGAGTTGAAAGCTAAGCGAGAGGCAGAAAAAAAGAAACAAGCAATTAATGTTCGATCTCAGAATGATATACGTTATAGGAAGTATACAATAGAAGAGATTGAGGCAGCCACCAAAAAGTTCTCAAATGCACAAAAAATTGGAGAAGGTGGATATGGACCTGTTTTTAAGGGTAAACTAGATCACACACCTGTTGCCATTAAAGTTCTGAGTCCTGATGCTGCACAAGGGAAGAAACAGTTCCAACAAGAGGTAACCGTTTTTATTACTAATTCAATGATAGCCTCTCTTTTACAATATGTATTTAAGATATGAAACATTCTGCATTATGAGGGCTGAACAACTTCATTTTCCGTAGAATTTGTGCATTCATTGAGTCACTTCTGGAGTTAATTACACGCTATGCAATTGAGGGAATTTATGATAAATTGTAGAAAGTGGAAAATGCATTTATACTGATGATTTATTAATGTAAATGGGACATATTTTAACTTGCTATAACTAGAATGTCTAAAAGATGTTGTAGCTTGTACTCTCTCATCTATGCTACACTATTATTAGAATCCCTCTCTCTTAGTTAAATTGTTGATTGGTGTTAGTATGAGTATTTGACAAGCCGCTTACTGATGCACATGAAAAATGTTTTTTTCATTTACAGGTTGAGGTCCTCAGTCTCAT</genome_strand>
        <mrna_strand>TTGCAAAGAAGCGGTCGTGGCCAACCAAGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGAGCTTAATAAATGGAAAATTGAAGAAGCTCGCAAGTTCGAACAAGCGCGTTTTGCTGAAGAGGCGGCTCTTGCAATTGCTGAGACCGAAAAGGCGAAATGCAGAGCTGCTATCGAAGCTGCTAAGAAAGCACAAAAGATGGCTGAAATAGAAGCGCAAAGAAGGAAGTATGCAGAGTTGAAAGCTAAGCGAGAGGCAGAAAAAAAGAAACAAGCAATTAATGTTCGATCTCAGAATGATATACGTTATAGGAAGTATACAATAGAAGAGATTGAGGCAGCCACCAAAAAGTTCTCAAATGCACAAAAAATTGGAGAAGGTGGATATGGACCTGTTTTTAAGGGTAAACTAGATCACACACCTGTTGCCATTAAAGTTCTGAGTCCTGATGCTGCACAAGGGAAGAAACAGTTCCAACAAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGTCCTCAGTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322824" ref_strand="+" ref_description="SGN-U322824        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT5G12000.1 | Symbol: None | similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:At4g31230.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:At1g16760.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:At1g78940.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:At2g24370.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:At5g26150.1); similar to putative serine threonine kinase [Oryza sativa (japonica cultivar-group)] (GB:XP_468172.1); similar to serine threonine kinase [Zea mays] (GB:AAL59227.1); similar to serine threonine kinase 1 [Zea mays] (GB:AAK73111.1); similar to serine threonine kinase 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53152.1); similar to putative serine threonine kinase [Oryza sativa (japonica cultivar-group)] (GB:XP_463352.1); contains InterPro domain Serine/threonine protein kinase, active site (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase (InterPro:IPR002290); contains InterPro domain Protein kinase (InterPro:IPR000719) | chr5:3873907-3876781 REVERSE | Aliases: F14F18.170, F14F18_170 (evalue: 6e-33, score=137) genbank/nr: kinase(evalue: 4e-31, score=137)">
      <seq>tcaaacgtgaaagaaaaactaagaatttttttttcagccaccgttatggtggcggaaaggggcggagcaaagtagcggcagcctctttccgatctgttttaatatataaatatatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattgattcatgttcgggtcaaaaattcaccaaagcctactttagattcaaatggaggtttaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgcacgcaaaaggatagtagtgaaagagattgtcattgagaatactgaagcatcgaagggacttcttgagtacatcaacagtaacagtgtcaccaacattgttcttggtgcatcgtctaggagtgctcttggcaggaaatattggactcatgatgtgccaacattggtaaataaggctgcaccagagttttgttctgtctacgtagtttcaaaaggcaagcaacaatctgtccgaccagcagcaaaatctcttccttcttgtgtaccagcaagacaaccatcttcgtcagcatggtcagcacctaggtcaagtaactctggatcagaagattcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="28314" stop="25324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28014" g_stop="27737" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27736" i_stop="26561" i_length="1176">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26560" g_stop="26475" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="364" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26474" i_stop="26025" i_length="450">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26024" g_stop="25903" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="486" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25902" i_stop="25825" i_length="78">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25824" g_stop="25624" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="687" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U322824" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28014" e_stop="27737"/>
          <exon e_start="26560" e_stop="26475"/>
          <exon e_start="26024" e_stop="25903"/>
          <exon e_start="25824" e_stop="25624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACGTGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGGGTACGTGAATTAATCCATGATAAGTTAGCACTCTCTTTTCCTCTCCAAGCATGGTTTGATCCTTTATTTTCCTTTGTAATCCGTTATGTTTAACACAATACTCCTATATTTGAAAGCTCGTTAACTTTAACCTTCGCATTTTACAATATCGAAGAAGTCTTGATTTGTCTTTTACGTTAGTAACATAGGTTAAGAAGCTTAAACACCACATTGTCCTCTGTATGTTTTTTAAGATCACTAGAATTAGGTGTTTTTGCCTCGTAAAGTCTGTTTTATGTTCTTTTTTCCTTCTAAAACCTCTTATTCTTCTCAAGTGTTTTGCACATTCAAAGTAATTTATAAGTTACCTAGTGTAGCATCATGTAAGTTTAGAATGAAACCGAGCTACTTCCATGATGGAAATTTAACTAAATCCTACTTTATTCTAAATGGTTGTTGAGGTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAGGTTATTATCTCTCAGTGTATCTGTTGCTTATTCTTCATGACAAAGAAAAGAGCTTGGCTTATATTACTTCTGTTGCAGGAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATCAGAAGATTCAAT</genome_strand>
        <mrna_strand>TCAAACGTGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAG..............................................................................GAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATCAGAAGATTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U337697" ref_strand="+" ref_description="SGN-U337697        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr2:10377059-10380143 REVERSE | Aliases: T28I24.10, T28I24_10(evalue: 3e-07, score=52.8) genbank/nr: protein(evalue: 2e-05, score=52.8)">
      <seq>aaaaactaagaattttttttcagccaccgttatggtggcggaaaggggcggagctaagtagcggcagcctctttccgatctgttttaatatataaatttatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattggttcatgttcgggccaaaaattcaccaaagcgtagctactttagattcaaatggaggattaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgcacgcaaaagggttattgcagatagtagtgaaagagattgtcattgagaatactgaagcatcgaagggacttcttgagtacatcaacagtaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="28301" stop="25650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28001" g_stop="27733" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27732" i_stop="26561" i_length="1172">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26560" g_stop="26475" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="354" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26474" i_stop="26035" i_length="440">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26034" g_stop="25950" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="439" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U337697" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28001" e_stop="27733"/>
          <exon e_start="26560" e_stop="26475"/>
          <exon e_start="26034" e_stop="25950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGGGTACGTGAATTAATCCATGATAAGTTAGCACTCTCTTTTCCTCTCCAAGCATGGTTTGATCCTTTATTTTCCTTTGTAATCCGTTATGTTTAACACAATACTCCTATATTTGAAAGCTCGTTAACTTTAACCTTCGCATTTTACAATATCGAAGAAGTCTTGATTTGTCTTTTACGTTAGTAACATAGGTTAAGAAGCTTAAACACCACATTGTCCTCTGTATGTTTTTTAAGATCACTAGAATTAGGTGTTTTTGCCTCGTAAAGTCTGTTTTATGTTCTTTTTTCCTTCTAAAACCTCTTATTCTTCTCAAGTGTTTTGCACATTCAAAGTAATTTATAAGTTACCTAGTGTAGCATCATGTAAGTTTAGAATGAAACCGAGCTACTTCCATGATGGAAATTTAACTAAATCCTACTTTATTCTAAATGGTTGTTGAGGTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGT</genome_strand>
        <mrna_strand>AAAAACTAAGAATTTTT-TTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCTAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATTTATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGGTTCATGTTCGGGCCAAAAATTCACCAAAGCGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGATTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341085" ref_strand="+" ref_description="SGN-U341085        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G72770.1 | Symbol: None | protein phosphatase 2C P2C-HA / PP2C P2C-HA (P2C-HA), identical to protein phosphatase 2C (AtP2C-HA) GB:AJ003119 (Arabidopsis thaliana) (Plant Mol. Biol. 38 (5), 879-883 (1998)) | chr1:27393720-27396943 FORWARD | Aliases: F28P22.4, F28P22_4 (evalue: 9e-37, score=143) genbank/nr: gi|50932989|ref|XP_476022.1| putative protein phosphatase 2C ABI2 [Oryza sativa (japonica cultivar-group)] >gi|48475234|gb|AAT44303.1| putative protein phosphatase 2C ABI2 [Oryza sativa (japonica cultivar-group)] (evalue: 5e-39, score=145)">
      <seq>ccccttcatcatctgtgcctgaagagagcagaagtgaagggactatgtcgcttgatgtgatatctgaaaatgaaagcaactggattgctggtgatgctgttgttagggaaagtgaggatgatgattccttatcactggagggtgatcaaattctcgataattcgtgttccctgtcagtggtgagcgattgtagtagtttatgcgctgatgattttataggctttgagatagcgtctgacatagaaggtcaggatttcgtggattctcagaaaagcatcagccatgatgaacttattggtaagactggggttttggttgagtcagatgttgaggatactttgattagacccgcggcagttcctgagagacttgaggagcagatcactgataaagatttgaatgcaacagtcagccgcagtgtttttgaagtggactacatacccttatggggatatacatctatctgtggaaggagaccagaaatggaagacgcattcgcaactgttcctagattcatgaaaattcctctaccgatgttaattggtgatcgcgtgcttgatggactgtctagacgcttgagtcatttgacgactcatttctttggagtttatgatggccatggtggttctcaggtggcaaattactgccgagaccggattcatgctgtattggctgaggagttggaaacttttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="31933" stop="30549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31639" g_stop="31008" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31007" i_stop="30913" i_length="95">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30912" g_stop="30849" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="696" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U341085" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31639" e_stop="31008"/>
          <exon e_start="30912" e_stop="30849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGCATCATCTGTGCCTGAAGAGAGCAGAAGTGAAGGGACTATGTCGCTTGATGTGATATCTGAAAATGAAAGCAACTGGATTGCTGGTGATGCTGTTGTTAGGGAAAGTGAGGATGATGATTCCTTATCACTGGAGGGTGATCAAATTCTCGATAATTCGTGTTCCCTGTCAGTGGTGAGCGATTGTAGTAGTTTATGCGCTGATGATTTTATAGGCTTTGAGATAGCGTCTGACATAGAAGGTCAGGATTTCGTGGATTCTCAGAAAAGCATCAGCCATGATGAACTTATTGGTAAGACTGGGGTTTTGGTTGAGTCAGATGTTGAGGATACTTTGATTAGACCCGCGGCAGTTCCTGAGAGACTTGAGGAGCAGATCACTGATAAAGATTTGAATGCAACAGTCAGCCGCAGTGTTTTTGAAGTGGACTACATACCCTTATGGGGATATACATCTATCTGTGGAAGGAGACCAGAAATGGAAGACGCATTCGCAACTGTTCCTAGATTCATGAAAATTCCTCTACCGATGTTAATTGGTGATCGCGTGCTTGATGGACTGTCTAGACGCTTGAGTCATTTGACGACTCATTTCTTTGGAGTTTATGATGGCCATGGTGGTTCTCAGGTCTCTGTCTCTCTTTCTGACTTTGGTTCATCCAATTCCTTGTTACCTAAATATGAACAAAAATTAATTGATTCCTTTTTTTTTGTCTCTTTCAGGTGGCAAATTACTGCCGAGACCGGATTCATGCTGTATTGGCTGAGGAGTTGGAAACTTTTATGA</genome_strand>
        <mrna_strand>CCCCTTCATCATCTGTGCCTGAAGAGAGCAGAAGTGAAGGGACTATGTCGCTTGATGTGATATCTGAAAATGAAAGCAACTGGATTGCTGGTGATGCTGTTGTTAGGGAAAGTGAGGATGATGATTCCTTATCACTGGAGGGTGATCAAATTCTCGATAATTCGTGTTCCCTGTCAGTGGTGAGCGATTGTAGTAGTTTATGCGCTGATGATTTTATAGGCTTTGAGATAGCGTCTGACATAGAAGGTCAGGATTTCGTGGATTCTCAGAAAAGCATCAGCCATGATGAACTTATTGGTAAGACTGGGGTTTTGGTTGAGTCAGATGTTGAGGATACTTTGATTAGACCCGCGGCAGTTCCTGAGAGACTTGAGGAGCAGATCACTGATAAAGATTTGAATGCAACAGTCAGCCGCAGTGTTTTTGAAGTGGACTACATACCCTTATGGGGATATACATCTATCTGTGGAAGGAGACCAGAAATGGAAGACGCATTCGCAACTGTTCCTAGATTCATGAAAATTCCTCTACCGATGTTAATTGGTGATCGCGTGCTTGATGGACTGTCTAGACGCTTGAGTCATTTGACGACTCATTTCTTTGGAGTTTATGATGGCCATGGTGGTTCTCAG...............................................................................................GTGGCAAATTACTGCCGAGACCGGATTCATGCTGTATTGGCTGAGGAGTTGGAAACTTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320427" ref_strand="+" ref_description="SGN-U320427        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr5:6939594-6942895 REVERSE | Aliases: F7C8.100, F7C8_100(evalue: 3e-26, score=115) genbank/nr: gi|63028790|gb|AAY27262.1| putative alfin-like transcription factor [Solanum tuberosum] (evalue: 1e-24, score=116)">
      <seq>aaagatgatgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgcggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtgtggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgaacgtgcgttattgaggtccatcctttgtgaagtcatgaaagatctttttgcggtatgagaagtggatttcttatgggaagctctttgatgccatatgttctattctacattacaattatctattatctagttgcaagaatgttgttgtctagtgtctttttctagtatgtcgtgctgtgaatgatgtaggttgccactctaaattagtcgtgtaggttgaagttattgtgtcatgactgttcaaatctcaagtagttgtctctggactgttgagggaagccatttttctcagttatgtgatgttaagaagatgctgttcttccccaaatttgttttgtcaatcttttgtttcctgtggcctgcaatttcttttgttccctctcccctcttatttgattcattctgaagtagctgatacagttcagtgcacgaagcatcttgtgtttacgtgggttcgggaaaggactgtatgcaagggatataatgtggttagtacatcttaattcttgaagtaacaagtctagctgtgtatttgattaagctattgcataggcctatatcttttttggttttctttctcatgtgtcgtgattggtttgaagtttaactaatttggatttacgctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43510" stop="42052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43210" g_stop="42352" g_length="859"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="856" r_length="856" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42351" i_stop="42209" i_length="143">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42208" g_stop="42199" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="857" r_stop="866" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U320427" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43210" e_stop="42352"/>
          <exon e_start="42208" e_stop="42199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTTTTTTGTTCCCTCTCCTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTCGTGTTTACGTGGGTTCGGAAAAGGACTGTATGC-----ATGTAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTGAGGTATTGCCTA----TATAT--TTTTTGGTTTTCTATCTCATGTGTTGTGTTTGTTTTGAAGTTCAACTAATTTGGATTTACGCTTAAAAGTTCCACTTTGGAGGGTAAATTAAGTGTATGGTGACTCCATATCTGAACTCGAATGTAAGACTCCTTTCGATTTTACCATAACCTTTGGTGTAATGAATACCTTGCAATCAAATTTTGCTCTTTTCTCTTTTTGTTTTCGTAGAAGGAAAATA</genome_strand>
        <mrna_strand>AAAGATGATGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGCGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTGTGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGAACGTGCGTTATTGAGGTCCATCCTTTGTGAAGTCATG---A-----AAGATCTTTTTGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTTGATGCCATATGTTCTATTCTACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGTGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCACTCTAAATTAGTC---GTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGGACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTCTTTTGTT-CC-CT-CTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTTGTGTTTACGTGGGTTCGGGAAAGGACTGTATGCAAGGGATATAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTAAGCTATTGCATAGGCCTATATCTTTTTTGGTTTTCTTTCTCATGTGTCGTGATTGGTTTGAAGTTTAACTAATTTGGATTTACGCTAAAAA...............................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320426" ref_strand="+" ref_description="SGN-U320426        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | PHD finger family protein, contains Pfam domain, PF00628: PHD-finger | chr5:9157982-9160357 REVERSE | Aliases: T19G15.60, T19G15_60(evalue: 9e-82, score=300) genbank/nr: nucleic(evalue: 7e-80, score=300)">
      <seq>cccaaaattttcattttccccctctcccttccctccattctctctctctgtctaagctttctctctctaaactttctctctcatcagcaaagccatttctgtgtctcatgatggatggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgttgaagagttttatcaacaatgtgacccagagaaagagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggcataaacttcgcccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcatggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggtacaacgtggttctgaatctcagatcaagtattcaagaccacaaccaaaagatgacgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgtggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtatggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgcacctgcgttattgaggtttatcctttgtgaagtcatgaaaactgttaagatcttttcgcggtatgagaagtggatttcttatgggaagctcttcgatgccatatgttctattcaacattacaattatctattatctagttgcaagaatgttgttgtctagcgtctttttctagtatgtcgtgctgtgaatgatgtaggttgcctctctaaattagtcgttgtgtaggttgaagttattgtgtcatgactgttcaaatctcaagtagttgtctctgcactgttgagggaagccatttttctcagttatgtgatgttaagaagatgctgttcttccccaaatttgttttgtcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51088" stop="42333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50788" g_stop="50582" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50256" g_stop="50224" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="240" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48569" g_stop="48341" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="469" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48340" i_stop="47819" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47818" g_stop="47686" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="602" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47685" i_stop="43262" i_length="4424">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43261" g_stop="42634" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="1230" r_length="628" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1231" polyA_stop="1242"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U320426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1230</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50788" e_stop="50582"/>
          <exon e_start="50256" e_stop="50224"/>
          <exon e_start="48569" e_stop="48341"/>
          <exon e_start="47818" e_stop="47686"/>
          <exon e_start="43261" e_stop="42634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAAATTTTCATTTTCCCCCTCTCCCTTCCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTACGTGAAACCCATATCGTCTAAATATTTATGGCAACTAAAGCCTACAACTAGATTCTTTTTGTATGAGTTTCTCTAAGTTCGCATGGGGAAGTGAATTGAGCCCCACGGCATCATCTCCCTTCATTATACTCATCCCGCTGAACATCCACTGATTGAATTGATCAGTTACATGTCACTTTATGTTGTGGAGTGGTGTGAAACGGCAGAGTAGCACTTCAAGGTGCTGAAGCGAAGCAGTTGAAGAGAAGTGTGTGCTTCAATGGCAGATGTATTGAAGTGGTGCGTAGCGTGAAGGCGCTTTTCTGTTTTAAAAGGTTTAATTTTTAAGAAAAAGGTTTAATTTCTGTGTTGCTGATTTTTTTTATTAACAGTGATTTCTTATTAACAGTGATTATTTTTCCGAAATCTTAGCAGTGATTAAAAAAATGGGTGACCCAGCTTCGAACCATGAGTAACTTTGATTTTGTTTCTCCCAATGGTCTATGGAGGATTTGTGTTATCTACTTTTTATTTTTTAATATAAACTTTACTTATATTTAGTCTCTCTCTATATATTTTGGACTTCTTTTACTTTAAATTGCTCATCACTTCAATGAAGCAAGCACTTCACTTATAGTCTGAAGCAAGGCCTTGTCGCCTTTTTCTCACTTCATGCTTTCCTGAACATTGCCATAGATAGACTGCATAAAGTCAAGCTTCACTTTTTGAGAGGGTCAAGAGTATAATAATTTATCAATTTTCTAAAGTTTTTAGCATCTTCAGGTTCGGTAAATTTTTTAGCAAAAAGGTAACCACCGCATCCGATCTTGATATCTACGAGTGCACATACCTTACAACAACCAATGTGTCATTGATTGAAACTAGGTTGAGTAGTAGTACAGGATGATGGTAATTTGAGCCTTAGAAGATCACTCTCGCACCTCAAGGTTAGGCCTACATGATGAGGACTCACCAACTTCTCAAAGATGCATGGTGAGTCCACATCATGTAAGCTAGTGTTTTATAAAGTGAGAAAAGGAAAGTGATGCATTAAGCAGAACAAACTTTTTCCATCTAAAGCGTGGTTTGATAAAAATATTAAATTTGCATAGACAAATAGCCAAAAACTCAATAGAAATATCATATTAAACAACAACATACTTAGTGAAATCCCACAAAAAGGGTCTACAGGTTCTCTGGTGAGGGTATAGTGTACATTCCTTACTCCAACTTCGTGGAGGTAGAGAGGTTCTTTCCAAAGATCCTGACGCTATTGCAACAATCAGTATGTGCAGTAAAAAGCAGAAGCAAGACAGTAAAAGAATAAAGCTACTACCACGAGACACTAGTAAGTCTAAACTCTACGGGAAGCAAGACAGTTATTCACCAGCTATTGTTTGAGTTCGTCAAGCTCTATGGTGAATTGCTACATGAAATTGCTCAATATAATCCCAACTTATATGTAATATGAAGCATATGACAAAAACAGTTATTGGTGTGGGGCTTGGTTTACTTCCCCTTGTGAGTTTAGAGACACACATGAAAGAAGTTAGTTGTGGGCTTCGATAGCCAAAGATTGGGAAGCTCATGTATATGACCTCTTAATGATGTGTGGCTTTTTGAGGAAAATTATGCGGGCTCAACCCAAAATGGTCAATATCCATCATTTTATGTGGATTTTTGGGTTGTCTTAGCCCATACTCCAAATGTCTACTCACCCCCCCCCCCCCAACACACACACACGTTGGGCATGAGGGTAGCCATTGAAGAATTAAAAAGTCTCACATTGGTGGTTTAAATGAGATGGCTGGTCTCTTTAGAAGACTTGAGCAATCTTGCTCCCTTTGAGCTAACTTTTGGATTTGAGTTAGGCTCAAGATTCATTTTTTACATGGTATCAAGCTCATGTGCATTCCAACCTATGATATACCAATATTGTTGAGCACCCATATTAATTTTTTTTGGACATGAGGCTTGGTGTTAAGTCCCTCATCAATAGGATGATAAAATTTGGACTCCTTTAATGGACTTGGGCAATCCTCTCCTAATGAATTAAGTTTTGGGGTTGAATTAAGCCTAAGATTCATTCCTTTACATGTCATAAATGATATACTTAGATTTTTTAAAATTTTTTGAAAAGAGCCAACTTGTATTATAAACAAATAATACACCGAGTGTTCTAAAGAAGAAAATGCCCCTCACTGAGGACAATGTTCTGCTGGATCTATAGAGGTACTGTAGAATCAGATGTTGGTTTGATAGTTTCTGGCTATTGAGCAGAATTCAATGGAATGGCTTCCTCAACATTTAAGGATCCCACTTCTTTGTTTCCTTGCTCTGCATGTTCATCTAATTCTAATCTACTGTCCACTTGAATGATTGACATAGCATCATCATCCCTTGGTGTCACATCCTGTGGCTCTTGATCAAGTCCTTTTCCATCGATATGTAAATCCATTGATGAGGTTCAAAAGGACTTTCTCCTCTGATATGTTGAAGGATCTGAGCTCCTTTAGTTTGGTTTGCTAGTATCTCAACAATAAAAGGATAAGAGGGCCTTTTGAAGGATGTGTGGGATGAACCCCTCACGTGACACATGTTTGGACAGCTGTATAATTCTTCAGCTTCTCTTACCTTCAATCTGACCCATTTTAGATGATTCTGGAGCTCTGTTTGTATCCATCCACTGCAGAGATCTCCAATATCTTGAAGGATCTTTTAAGACCAAAACAGAGTGGAAGTCCTACCAGTCTGACCCAAACTTCCTTCAGGCTTTCCTAGATGGAGTTTGAGAATGGCATCTACCAGTCTAAGTTGGAATTTCTGAGATTTCTAGAACCATTTCCCTTCAGTTCATGGTCTGCAGCTGTTGTTGGAAACTCAGAGAAACTGATTGCATCCCATCTCATATATTAATGTCATGGTGGTTTTTCCAGGAGCTATTTGCCCGTCAGCAAATCTCAGAAAGATGTACACTCTGTATCTCCTCTGATAGGCGTCCTACCATGCCCTATCCAGTGGTTCATTCTGAGCTTTTTTGGCATCTTCAGGAACAATTAAGGATTTCCCTTTCCTGTTTACGCTAGCAGCATTCATTTCTCTGGTAGACCATTTATTATTCTTGACAGTATCTGCATAAAGGAGCCCTTCCTCTGTGGTTTGATGTAATAGATTGGATGTCCTTACCTTTTTGACATCTATGAAATCGGTTAGCTAAAATATCCAACCACCCTGAATGAAAGTCTATTTTTGGTATTATAACTGTTTTCCTCTTTCCTTGCACATATAATGATACTGAAGTAACAACCAAATTTGTTTTAAGTTTCTTGAAAAGAAAAACTCAAAAGTAATGGTTGTGGAATTTCCATCTCCTGACAGAGTTCCTCTTTGTTTTCGACTCTTCCTTCAGAGTGTGCTGTCCACTCCATTTCTTTTGACTGAAGCTAGCCCTTGTCATCATGTTTCAACCTCTTTTCACCCATTGTACCAAGTCTCAGCCCTTGAGACCTTCCTTGTGATGTCAAAAGATTTAGAGTCTATTGCAAATAAATGACAGCGCCACTCATGGCGAAAATCGAAATGTGAGATTGAAGAAGGGTGAGAGAATTCCGATGACAATTTTACTTGGATTTTATGCCTATTAGATTCTTGAATCATGGGTGTGAGTTTCTTCGGCATTTACCTCTCTATTTCAGCATTGTAATTGTACCCTCCAGTATTTGATACCTTATTTTTCTTATGTAAAATAGCTCCCTATTTGCTTCAAGATTTAGTCTAATGAGGGTTGTCAATGATGTTGCAAGTTTCCTTTTGGTCTTCAAGATGTGGCTGGATATTTCAATGGATTAAATGCACTTTGTTCAATTATGTTCTAGGTTTTTCCTGGCCCTTATCTCACTGGTACATAGGCTGTGTATGTCTTTCAGCTCATGAACCAAATTTTATCAGTTTTTCCAACCAACATTAATGGAGATTGAGTAGGCTAACTTAGCCCACTTAGTCCTTGAAGATTTGTGGGTTATTCCTAATTAAGCCATCCTCAAACTTTTTCTATTCAGGTTTATTGTGGCATTTGACACTTGTTAGTTTTATTGTGTCGATATTATTCTGTAAAAACTGCAAGTGGAATTACCATTTTTAACCTCAAATGATCTGATCACAGGTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCA</genome_strand>
        <mrna_strand>CCCAAAATTTTCATTTTCCCCCTCTCCCTTCCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG.....................................................................................................................................................................................................................................................................................................................................ATGTTGAAGAGTTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320432" ref_strand="+" ref_description="SGN-U320432        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein, contains Pfam profiles PF01852: START domain, PF00169: PH domain | chr4:10431532-10437436 REVERSE | Aliases: F13C5.210, F13C5_210(evalue: 2e-160, score=562) genbank/nr: gi|62321635|dbj|BAD95241.1| hypothetical protein [Arabidopsis thaliana] (evalue: 1e-158, score=562)">
      <seq>gaattgtggtccactacctggatatgttcgagctcatattgagagtggtggattcaatatttccccactcaaacctattaacgggaggcccagaacacaagtgcaacatcttatgcagatcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcagatgttgaacagtgtggctggacttcgtgaatacttttctcaaactgatgaaagaactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttctaagaggaatcaaaaactccaggagactcctcatcatcgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacctagccctgaacgtgaaatgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgcgataatggtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacgaatggaccatgttgctagacgtcctggttgtgcagcacaagttgcttcagaaaaaggactgttttctttaatttttaatgtgcaagttcctggatcaacacactacagcatggttttctattttgtcatgaaagagttaacatctggttctcttttgcaacggtttgttgatggggatgacgagttccgtaatagtagaatgaagctcatcccgtctgtgccaaagggctcatggattgtgcgtcagagtgtcggaagtactccttgtttactggggaaggcagttgactgcacctatatccgcggtcccaagtatttggaaattgatgttgatattggttcttccactgtcgcgaatggagttttggggcttgtgattggtgtaattacgagcctagtagttgacatggcttttcttgtacagggaaactctcccgatgagttgcctgagcaactaataggcgctgtacgtgcatctcatatagaactctcagctgctgttgtaccaaaattggagcctgatactacagagtaggtcaaaccacacacatagttcaccttcttcagaagttgattcttgaaacatacgtatacatagatgtagttcctttctattttcgttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="59193" stop="51939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58893" g_stop="58850" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58849" i_stop="58709" i_length="141">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58708" g_stop="58553" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="200" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58552" i_stop="57822" i_length="731">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57821" g_stop="57592" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="430" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57591" i_stop="57502" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57501" g_stop="57462" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="470" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57461" i_stop="57364" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57363" g_stop="57209" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="625" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57111" g_stop="57010" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="727" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="57009" i_stop="56095" i_length="915">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="56094" g_stop="56050" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="772" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="56049" i_stop="55961" i_length="89">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55960" g_stop="55820" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="913" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="55819" i_stop="55084" i_length="736">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="55083" g_stop="54988" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="914" r_stop="1009" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="54987" i_stop="54898" i_length="90">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="54897" g_stop="54796" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1010" r_stop="1111" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="54795" i_stop="52441" i_length="2355">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="52440" g_stop="52239" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1112" r_stop="1313" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U320432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58893" e_stop="58850"/>
          <exon e_start="58708" e_stop="58553"/>
          <exon e_start="57821" e_stop="57592"/>
          <exon e_start="57501" e_stop="57462"/>
          <exon e_start="57363" e_stop="57209"/>
          <exon e_start="57111" e_stop="57010"/>
          <exon e_start="56094" e_stop="56050"/>
          <exon e_start="55960" e_stop="55820"/>
          <exon e_start="55083" e_stop="54988"/>
          <exon e_start="54897" e_stop="54796"/>
          <exon e_start="52440" e_stop="52239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGAGTAACCTCTATTTCCTTCCACTCATTTAGTTAGATGCTCTGAATACATATGAAAACCATAATTGATGATTCTCTATATATCTTTGGCAGAAGTACTCTGACGGTTTTATCTTAGATACTAACCAATTCTCACCACTCACAGGTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAAGTAAGTAATACATTAGCTTAGTTTCAGGAGATGACTACCCATTTAGGGTATTTCGTGTTGATAATTGAATGTTAACCAGCAATCGAAAACATCACATTGCAGTCAAGATGTTTTCTTCATTTTCATTTGGTTCCAATAGAAAATGTTAAAAGGAAGAAAAGATGTCATAGTCACACACACCGTTAATCAAAATTTTCTATGAAGGTTATACATAGAAATAAGAGACGCACTGAAAGAATGGGAAATGAATAATGTCTTCGCTTTTGCATAACTGTGTTTTTTCTATGGAGAACACTTACACTAAGTATAACTATTTATATACATTGCTACTTAACTACTATATACACATTACTACTTTACTATCGAAAACTCTCTCTCAAGCCGGTGCATACAAGTCATCGTACTGTGCTTGTTATATAGGTGACTAAAGTGGTGACAAGTGACAGATTTCGTGAAGTTCAACGAGCCCCTTTGTATTCTTCCAACTCACTTTAATAAATTAGAAGTATTAGGCTTACATCTTTTCATCAATTTTGTTTCACTCTTAAGCAATAGCTTTTGTACAGATTTATTACACTGAGCATTATAATACTAGTGAACTTTAAAAATCAGAAGTCCATTTTGCCATAGGCTAGTGTTCAAGTCCCAGAGATGGACTGTTAATTTTCACTGGTAATTGGCTTATGTTGGAGTAGGGCTCTCCAGAAGACCTGTATGTTTTTTTAGGTTATGGTTTCTTTACCAAGGACAGAAAAGTCACATTCCTAATAGCACTGTGGTCCTGCTTAAGTCTCCAATTATGTGCTTTAATTTTGTGCATGCTTTCACTTTTAGCTGTAGAACTTAAGCTTACCCTATTTGTAGTCAAGACATCAAGTACCATAATTTAATTTGTTTTGGTGCATTTATTTCCAGGTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAAGTAAGTCATTCCGCAGCTACTTTCTGTTTTGAGTTAAACTTGCAAGTGCTTGGGAAAGAAATAAGTGAATAACATTTGTCTTCTGAAAGGTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAGGTACCTTTGTTTCTATCAACTTTTTAAATGACTTCCGGTAGTAGAATGTTTATTGATGACACTTCTGATACTATGACGAATACAACCATAGAGATGCTTTTAATTACTTATGATTTTATATGATTCTAGGACAAACTTGTTGGTTTTAATTTAAACTCATCTCTTCACAAAAAAATTGTTCTGGATGGGCTGAGATAGATAATTGCTCTCAGGTTCATGCAATTATTATGGGTAGTGGATGACAACGGAGCAGTATAAGTGAGAACTTCACTTTTTGAGATTGAATAAGTGAGATAACTGAACTATTACATTGGAACTTTAACCAATTGCTGAAGATTAAAGATGTCACCAATACAGAATTTTCTTGAGAAATCAGGGACAATATCTTGGAATGAAATGTATAAGACTCCTTTTTCAAGAAGATTTTCTCGGTTGAGATTGTTTTGCACTTTTATTCGTCAGAAAATTTTATTGGTTCTCTGGATTGAAAATTTCTGTTTCTATTCCCTGGTTTGAAGTTGCCAGTGTTTGGTCAATCTCTGCATGGAAAGTAGTTTGATGTCATAACAAGTTTCCTTTTACGACATGCATGTGATCATTAAATGCATATTAAACAGATGCGCATGCTGAAACTTGTGGGCTATCTTTGAGAGATTTTGCTGTGTTCTCCACTTCCTTCTATATTTTTATTACAATGTATATGTGCTTCGAATTGAAAACTGTCATGTACATGAAGGGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAAGTATAGACTTCTGTCCCTTTTCTTTGAGTTATTTAACAAATAGACACAATGTTGTCTCGGATTTGATCATGTGTTGTTTATATTCTGTAGATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAGGTATGTGAATGGACCTTCACCTGCAAGATTTTTTTTTCTTGTTGATATATTTATCTGTACAGTTTGTTGAACTCTGTCAAAGTATGTTGGGTCCAACTATCTTGGAATGTTGGAATAATTTTGAGTTATATAGGTACAAGTATGAGATACGTCTTCTGTCCCATTTTATATTGCTCCATTATTATTTGGAGAAGTCAAAAATGTTTTGCATTGTACGATTTTTAAATACAGTAATAGAAAATTGTGACTTGTAATGCTTTCTATGTAGTTCTTGATTATGTATAAATTCATTTTAAAAACTAAGGAATTGATGTTCGAATAGAGACCTAAAGTCAGATGACTACTCCTCATACTTCTGGTCCTATCATTCATTTTGGGATGAGAAAGTAACAAAATGAATTAATGAAGTTAGTCTAATACTCTAATACATAAAACTTGAAAGTCGGATGTTTTCCGGTATAGACTTGTAAGTTGGATAGCTGGACTCCCATTTAAGTTACCATAAAGCCAGAAATTGATAACTAGATAGATAACAACAACATACACAATTTAAGTGGGGTCTGGGAACGGCAATGAGTACACAGCCTACCATACCTTTGTGAAGGTAGAGAGGTTGTTCCCGATAGACCTTCGGCTCAAGAAAAGGAAATATGGTAGTGAAGAAGTCATGTAGAAATAATAAAGAAAATCTTTACGTAAATTGCAGAGAATTTCCTGACTCAACCAAAAAGCTAGAAAAAGATTTCCTGATAAGAACATAGTAGTACACACCTTTGAATTGAGAAAAAAAGAAAAGGAGGCAGTAGCAACAAGAACAGAGCATCATTATAGTTTTATATTATACTCCCATAATACCTAATTAAATATTAACATTTCTCTGTTTGGTATATCCCAAAATAAGTATTCACTTTCTTAAAAAACAGATATCTATTCAAATATTATATGCGGAAGAAATTATGCACGGGGTACTTTTACACTTTTTGATAAACTTTTTTCCCTTGTAAACAATCTAAAAGTAGTGGCAAGGAACTTAATACTTACTCTTAGTGATAGTCAAAGCAAAACATTGATTTGAAGCAGATGGTTTAATAGGACAATCTCTCCTTCTTTTTCTATAATGATGCCATGGTGTTCGGATCTGCATGCACCTAGACTATTCTACTGGATACTTCTCATCTCCTAAGTCCCACCAACCTAGTTGCTCAGACTCTTCACTTTTGATGCCGCACCCATGTCGACAAGACGTGGGTGTAAGTGTGGGATACGTGTCCGATTTGGTCAACCGATTATGGGTACTTTGACCAAAATCGACGGGAAAAGTCTGGATAGTTTTTATGATTTCTGTAGTCAATACAGAAGCTAAGGTGAAATTGAAGAAAATGGAATACCTTCTATATAGAATTTTTTTTTTATGACAAGGGAAACTGCACCCGTATCCATTCATGGATACTTATCCCCGAATCTTAAAAATTAGATCATGAAGGATCCGACTTCCAAATCCGCACCCCTATCGGACACCCCCACCCGAGTCAGAGCAACTTAGCATCACCAACATAGGGACTAGGTAACTTTGCCCATCAAGGTTTTGTTGATATGAAATCTTTGTTCAAGAATATGGAAATCATGGGAAAACATAAGGAAGATAGGTGGACCATTCATTTCGGTAGGATGGAAATTAATCAACTGTACGATGCTTGATCTTCCAGTGATGGTTTCATCTCACTGCATAGAATATAGAAAGTTTTTCAATGTGGAGTGATTTCTTTATTGGAATGAAATCGTCACAGTGTCAAAAAAGCATTCAGGTTTACAGATAAGGCCTCTAGAACCATTTCACTCACCGCTCAAGTAATTCTCCACAAACACTATACAATATCTTGAACTTTAAGAATATTTAGCAGTGCCTGCATCGTTGTATGTAAAGTGGATTACAGTGCCAAATAAACTATCAAAAGGAAGCATTTGAATTACTAGAGCCTAGAGGGAAATAAAAAAGGGAACTCTTATCTGCTTAGTAATGAAGATGAATTAAAGGAGATATCCCAGTGTACTATTTTAGTTTGGTCATTGTATTTTCAGTGTATGTTCATGATTTTTTTGTAAACATTCATTTCTAGTCGAAAATTTCTGTAATAATAAAACTATATCCCCGCCATCCCCTATGCATCCTCCCTCCCTAATGACAAAAAGAAGATGAAATTGATTCGAAATGATGTGTTTGACATTTTCTTTCTCGAAGTCATGCAAATGTGTTATCCATCTTTTCTCTAAAAACTTCCTTACTAATTGTTACCTCTCAACGAGGTTGCTATGTATATGCTGAATCTGATAATGTCATTCGCTAATTTGTGTTAGGGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTTTCTATTTTCGTTCATC</genome_strand>
        <mrna_strand>GAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGA.............................................................................................................................................GTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAA.........................................................................................GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAA..........................................................................................ATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTTTCTATTTTCGTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315763" ref_strand="+" ref_description="SGN-U315763        Tomato 200607 #1 [19 ESTs aligned] arabidopsis/peptide: | Symbol: None | mob1/phocein family protein, contains Pfam profile: PF03637 Mob1/phocein family | chr5:18479444-18482248 FORWARD | Aliases: MFC19.22, MFC19_22(evalue: 4e-121, score=431) genbank/nr: gi|32470635|gb|AAP45162.1| putative Mob1/phocein family protein [Solanum bulbocastanum](evalue: 2e-121, score=437)">
      <seq>cgaaaaatcattttttagaaatccatttttcatatatataatttttttaaaatgagtctatttggtcttggaaggaatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaaggagctagctccactccaagatctcatagattctattattgtgccttactaatcatcttctttcagtttttgcttttaacctatttttaataggaaattaatgagtatggtgtgataaaaatgtatttttaccattctataataagtatgtagtctaaaagtttgacattttaatatcattattgatattgtgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73927" stop="67478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73627" g_stop="73554" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73553" i_stop="71872" i_length="1682">
            <donor d_prob="0.421" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71871" g_stop="71823" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="123" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="232" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="326" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="460" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68537" g_stop="68374" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="624" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68373" i_stop="67996" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67995" g_stop="67779" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="841" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="842" polyA_stop="856"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U315763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73627" e_stop="73554"/>
          <exon e_start="71871" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68374"/>
          <exon e_start="67995" e_stop="67779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAGGTAAAATTAATCACTTTTTTTTTTAATTTTTGGTATGATTTTGAATTGATGCATGATATGTAGAATATTTTTGTTTCTAAATATATGATTTTTTGTTGTTGTTGTTGTTGTTTCATTGATGTTTTATTGGTTGTAGAATTTTAGGTTTGTTTTATTTTCTCCTTTGAATGAGTTTTTAGAAGATTTTAATTTCATTCACTATATTTGGATGTGCATTATATGAGATTGAAATTTGTTAGGAGTTCAGTTTTTTAGGTTTACAACTTTTACATGTGGGATTGGGGATACTTTACATGTATATATTTAGAGGCGGATTCAGGATTTGAGGTTTATGTATTCGTATAAATTATTGCTCAAGTTAATAGATAAATAACTTTGTTTTGCGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGATCTGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGGTCTGAGGAGGGTAAAGTGTATGCAGAGCTACTACCTTGGAGGTAGAGAGAGACTGTTCTGTTTCTGATAGATCCTTAGCTCATAGAAATACAATCGACGTAGTACTATAGAGAAAGGTATATGAAAATGGAGAAAGTCTGGGCAAAACACTATAGAAAACTGATTGAATCATCCTAAACAATAGTTTGTGACTGTGAAACCAGTTACTATAGGGATCGTTTGGTTCGTGGACTAAGTTATCCTGCAGACTAATTTAATAACACCAACTTTGATGGGGTAAGGTGGGATATCTAAGATTAAGTTTGTGATTAAACTTATACTTTGTTTGGTTGAAGGTCCTGGGATATCCACTTTTATCCATGAACTAAATAACCCCTTAGTGGTCCATGTTTGATAGTAGTCTTTTATCAAACTCATAAGCTAGCTCCGCCGCTGATGTATATTACCATTATACTGTTAGTTTCACTTGTTTTGGGCAAGAAATCTAGTACATTTAGGTATTACTATTTCAAGATCAAATATTTGATCTGGTGTTGTATTCAGTGAATAGTCGCCAGCCCTTTTTTTTTTTTGATTGGAGATGAACTTGTCAAAACAGAAGGATAGCTTGCATATATTTGTCTACTGTACAGATTGTTTGTACTTTGTAGAATGATCAAACTTTACCACATAGTTTTTATTTGACGAGATCAAATGGGAGGTTGGATGTTCTGTTGTGTATAAGAAGAGAGAATAATGCTTCATAACTTATCTCCTTTTCTGATCCATAGAAAGTTTCACATGTCACAGAAAACATGACCAAAGTCTTCTCTATCTCTTTATCTCTATGTGTCCTCACGGTTTTGTTTTAATGCCCGACTTGGCTTTGTTTTAACGTCCAACGTACTCGAAAATTGTAATCATGGTCTGAATATAAAAGGGTAACACATTCTCTTAGCAAGTTTGCGCTTCTAAGGCTTTAGCTCAATGAAGATAATGATATTTCTGCTATTCGTATCTCACATATAAATTATATCTTTTAACAGGTGACTATCACATTAATTCTCTAGTTTAGTAGTTCCATTTAACCTTCTTGTAGAATATTGCATACTTCGCATTATGTTTCTTGTCATTATTTTAGCTTCATTTTAAAAGTGTGTTTTGCTATCCTATTTGGCGTTTTGGGACATAAGCATTATTCATCTGATGTCTTACTTCTTATTGGTTTATAGGAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</genome_strand>
        <mrna_strand>CGAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322774" ref_strand="+" ref_description="SGN-U322774        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, identical to transcription activator GRL5 (Arabidopsis thaliana) GI:21539888 (unpublished); supporting cDNA gi:21539887:gb:AY102638.1: | chr3:4608390-4610406 FORWARD | Aliases: MDC16.8(evalue: 4e-41, score=164) genbank/nr: hypothetical(evalue: 3e-63, score=244)">
      <seq>atgtcccaatgcttccttttagcttaatctctcaattaactcatccaaatttgtactaaatcaacctcaaaaatctccatttttaagctaatggaggtactaatcaaacttaatcaacccccttaatgataattatccaaaaccctagatctgtccccttattaggtaactccaacaacttttgctctctatatctcatacactgaaagtctgaaacacctttatattaactccagtggtgataataatttctgggtacagctttttttggtgaattgtgaagtgggtatttggggatttttgttttcttttttaggtgggagatgagtatggcggcggagaatgggtacagaccgccgttcacggctgtgcagtggcaggaattggagcatcaagctatgatatataagtatttggtggctggtattccggtgccggcggaccttgttgtgcctatacgacgtagctttgaacccatttcagcaaggttctttcatcatcctagcttggggtactgttcctattatgggaagaagtttgatcctgagccaggaaggtgtagaaggacagatggaaagaagtggaggtgcgccaaagatgcatatcctgactcaaagtattgcgagcggcacatgcatcgaggccgcaaccgttcaagaaagcatgtggaatctcaatcgactgcccagtccttgttgactagtatgtcacataatactactgggagcactactgggagcagcaaaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="75977" stop="78690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76277" g_stop="76783" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76784" i_stop="78146" i_length="1363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78147" g_stop="78390" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="751" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-U322774" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76277" e_stop="76783"/>
          <exon e_start="78147" e_stop="78390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCCCAATGCTTCCTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCTGTATGTATCTCTTTCTAGTTTCTTATGGTTGTCAATATTTTTTATTTGTTTTTCAGTAATTTTGGTATTGGTCAGCTTGCATGCAAAGATGGATTCAGATTTAAGCTTGTTGGGTTGTAATTTTTGAAGTTTTTTAGCATTTTATTCATTGTAATGTTAACATTATGTGTTAAAAATCTTATCTTTATCGAAAAATTTGTGTTTTTTTTTCACTAGATATCATCTTCTAGTCTTAAAAAGATACTGGGTTCCTTGTTCGCATCTGTTCAAATCTTGATAGACAGAGTTATCCGGTACTTGTGCTGGAAAGATTGGCGCAAGTTGGCTCGGACACCACGGTTATCCAAAAGAAAAATACTGTGTTTGGATAAACTAGATCTGCTTCTCACTAGAAAAAGCATATCTTATAATATAGTGTTCAGACCGATAGGAAGAAATCAGATGTTCTTTTTTATCATTGTAAACTGAAAACAATTCCTCTCTTCATTTTGTAAGTTAGCTTGTTTGTTTGTTATAGTTATATATTTCATTTAGCTTCTTTCAGTTAAGTAGTATGATGGAAATGTCTGCATTTCTGAAATGGAAGTTTAGTAAGGTTTGATAATGAATTTGGAGATTGTAGATGAAGTCATAAAGATAACTCTTTTGTCATTGTTTCCTTTTTGGCTCAATATTTTGTAAAGGCAGCATTGGGGAAGGCAAGATTTTTGCCAAAGGGTTCATTGTCTACTATATATACTTAAAAATAGTTGACTTTGTATATACAATGTGATTTTCTTGTGAAGCACTTCTTCCCCGCTAGCTCTGTGCCTGTAAGGCAGTTCAATCATTGGTAGCCATTCATTTTGTTTTCATCTCATTCCATTTCCTTGTATGAAGATTTGCTGATCCATTCATTTCAGCATATTTCTGTAATTAGTTATTGTAGGGGAAACATTTATTTCTTTTATTCGTTGGGTAGGACTGCAGGATAAGCCGATTTTGGGTTTAGTAGGTTGCTAATGTATTCTAAATATATGACTTGGTGGACTATACGTTTGCACGTCTTTATTGTACAATAATGTTAATAGGCGGCATATTAGTGCTTTTGTACTGGCTTATCTGGTGTCTGTTTTGGTTTTATGCCATAATTTACAAGTAATTTATATTTCAATGTCTGTGGAGCGGATAAATTTCACTATCTATTCTGGTTAAACTCCTATCTGCTGGAGTTCCAACTGCGGATAACTCAATCAAATGTAGTAAAGTGTTCTCTTTTCGTGCTATAGAGCACTTCCTTTTTAAGGAGTCTGAGGGAGGGGTGTTGCAGCCTTACTGCGTTTGCTAAATATGAAGCTTATTAGTTTGTATCTTGTGCTGTCAGTGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAG</genome_strand>
        <mrna_strand>ATGTCCCAATGCTTCCTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324369" ref_strand="+" ref_description="SGN-U324369        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | cadmium-responsive protein / cadmium induced protein (AS8), identical to cadmium induced protein AS8 SP:P42735 from (Arabidopsis thaliana) | chr4:10446351-10448201 REVERSE | Aliases: T18B16.3(evalue: 3e-28, score=122) genbank/nr: gi|15234117|ref|NP_193642.1| cadmium-induced protein [Arabidopsis thaliana] gi|1168863|sp|P42735|CDI8_ARATH Cadmium induced protein AS8 gi|629507|pir||S47247 cadmium-induced protein F13C5.230 - Arabidopsis thaliana gi|534902|emb|CAA85363.1| cadmium induced protein [Arabidopsis thaliana] gi|2832634|emb|CAA16763.1| cadmium-induced protein [Arabidopsis thaliana] gi|7268702|emb|CAB78909.1| cadmium-induced protein [Arabidopsis thaliana] gi|18176472|gb|AAL60050.1| AT4g19070/F13C5_230 [Arabidopsis thaliana] gi|22655438|gb|AAM98311.1| At4g19070/F13C5_230 [Arabidopsis thaliana](evalue: 2e-26, score=122)">
      <seq>ctactatattaacaaaatttcaatttcaaataatttttccttcgagcttcgcgaacattacactgagcagcaccctttcatggtagagatgattataaagggtctgttcaggagatacgaaagatggaatccagtgcatcctacatatggagccttctggggcatgggaataggcgttggctgtggggtgggatggggtcctggatttggtcctgaggctattggttatgttggagctggatgtggtgttggattcagcgttggcttctctctgctcggcgttggcattggtctacctgccaattacatttacacaggtccttacaatgcattcacagctgccagaagtggtgctattgagatgtctcgatcaactgatattcgaagcatgagaaacattgtggaagagagtcggtgttacctcgattcaaatattgctggcttccaagaaagagtgattcagtctttttcaagcataaggttcaaagaatcagtagggaaggcggtagattcgtctgaaatgccaatcaaaatgtcttttccggatcaatgcatggatcgtctaaaacaaggcatcaatagcttatttcatccttgcaaaggttcaaaggattaagcaacatgttgaggagcacaatcccagaagggttaatatacattgcacacttcacagcattggccttagtttttttgccttcccacagatagtagggagcatataggtagaagaaaaaagagcatttacagttgcagttgttaacatgctttcatttcttttagtttggtaaacattgtttgaatgaaagtgagaatttgaattaatacggaaaagggtcaaaaatgtctctgaactatcgcgaaaggtcataatatacccttcgtctttgtccatctattatgctaataatacttttcggatttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88434" stop="84293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88134" g_stop="88053" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88052" i_stop="86541" i_length="1512">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86540" g_stop="86294" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="329" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86293" i_stop="86137" i_length="157">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86136" g_stop="85864" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="602" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85863" i_stop="84915" i_length="949">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84914" g_stop="84593" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="924" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="925" polyA_stop="935"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U324369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>924</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88134" e_stop="88053"/>
          <exon e_start="86540" e_stop="86294"/>
          <exon e_start="86136" e_stop="85864"/>
          <exon e_start="84914" e_stop="84593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATGGTAGAAACTTAAATCTCTGTATTTTTTTTATTTTTTGTTTCATTTCTATGTGTTGATGCTTGTTTTCATATGATTTCATTATTTGTATAAAGGGTATTTTGTGCTATTTTGTTCTTGGATTTTTGGCTAATTTGTAAGTGCATAACTTGTGTGAATCAATTATATTGAAGTATCCATTTGGTTTCTTGTTGTTGTTGCTTACTTTGAAATTTCATTGTTTTAAAAAAAAGGGGGCTTTTTGGGCTATTTTGATCTTTTGGGTATTTTCTAGTTCCTTAAGAGCACAATTTTGTGTGATTTGTCCATTTCAATTCCAAGTGTTGTGTTTATTTTGAGGTTTCTTTGTATAAAAGAGGGCTATTTTGTTCTTGGGGTTTCTCTAAATTATTGTTTGTTTGGTTCTCCACACGGTATCTGGTACCCACATTAGAGCCCGATTATATCAGATTCGCTCCGGGAAGTCCCACATTGGGGTTAAAGCACTGCCTAACAAAGGCGACTCCGTACCCAAGGAGCTCGAACACGAGACCTCTTGGTTAAGATGGAGGAATACTTACCATGGGGGTTTCTCTAAATTTTAAGAGCATGACTTTGTGTGAATCAAGTATAGTGATTTATCCATTTCAATTCTAAAGTGTTGCTGCTTACTCTGAGATTTCATTGTTTACTCTGAGATTTCATTGTTTAAAAAGAAAGCTTTTTTACCCTCTTTTGTTCTTGGGGTTTTCTCAATTTCTCAAGTGCTTAACTTGTGTGAATGAAGTACAATATACTGAATTGTTCATTTCATTTCTAAGTGTTGCTGGTTACTTTGATGAGCTTTCATTGTTTAAAGTTTGCTAAATTTGCGCTGTTTTTGTTCTTGGGTTTTTTCTATTGTTTTTAAGAGGATAGCTTGTGTGAACCATGTATACTGAAATATTCCTTAGTGTTTCATTTGGTAAGGGAGTAGTTAGCAAAATCTTCTGGTTTGTGAACACAAATAGAACTAGGAATAAAGGGGTTAACTTTCTAGTTGAATTTTCAAGTTATTATAAAATAGCTCCTTTTTTTTCCACAACTTGATGGTTAACTGGGATGAGTGGGGAGAATTAGTACGAAAAGATAGAGAAGGAAAAAACTCATGATCCAACTTATGTGTCGTACTTGCCTTTTTGGCATGTTCAAAAAAGAAAGTCACGTTTATTTAGAAAAAAGAATCAACTTTGAACTTCTCATTGCACCCTTAATGTGATGATTTATAGTCACGTCTATGTCTTGTTATAGACCACAAGTTTTAGACAACTTTCTTGTGTCTTATCAAACACAACAACGTAAACTGGGATGGAGAGAGTAAGACACAGAACCCCTGTGGAAGTAAAATTTGCCTTCCAGACTAAACTGTTAGAAAACTTTGAGAGGACAACTTTCCAAAGGAGTTAAAATTTGCCCTCCGGACTTGGCATTTCCATTTTCGTTATCTTAGGGTATCTCTCAACAGAATTTGATAGACTTATGGGCTTGTGATTGTAGGTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATGGTAAAAATAACCAACTTTTCATATTCAGCTTCTTAATGAATTTGGACGTTACATTTCTGTTACTTTTCGTTTATATTTGATGATTATTGCCAACTTTCTGAGAGTCGAAACTACTGTTGAAGTTGATTTATTGATTTACCCGTATATCCTTTCGTAGCATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAGGTATGCTACAGAGTGCTCACAAATGGAAGTAGTACTGTATTACAGTTAAACCATGATTAGACTTTTCATGCTACTTTGTTCTGATTCTTTAAACAGTGTAATATCGGTGTCATCAAATGTGATTATTGACGGGGAAGGAACTTGATCTACCCTTGGTCAAAATGGTTATTGGTTCGGATTGGTGTGCAATTTGCAACTAAGATTGCTTTTTCATTTTACAATCATATCAACCACTTTTTTCCAACATTGACCATCTCCGACTGTTTTATGTTACTATGATTGAAGAAGTACTCACCAATTATATTCGTTTTTCATGGAGCACAAAGTCAATTCAAGACGACATTTTGGTGATAAAAGTGGGAAGAAGTAAAGAGTGTGTGTTGTGTGGGGGTAGATGGCGGATTAGATAGGACGAGAAACAGGACATAACTCCTACTTTCCTATGTATGAATCTTTTATGTCAAGTTTGTTACATTTATTAGGTGTAATCTGAAGCTAGATAATGATATCGATGTTTTTGTCAACGTTTTAGATTGAACATGAGCACTGTTTCCTTCATGACTTGTTCGGGGATCGTTACTGTTTCCTTCTGGTTCACTGAAACTGTGTTATGTATAGTCTTATCTTGAATCTGTGTTGAACTGTTAAATGTTGTTGAATAACAAAGCCGGTACTCTATCTGCAATCATTTGTTCCCTTTACTGATACTTCCACGCTAATATACAACGCGTTGTCATCTGTGTAGTCTATCGTGCTGTCATTTATAACTGTTCTACAACCATGACATTGCCAGTGTTGAGTACCTCATATGGATACTTGCACACACTCATATATCTGATATATACCATAAATGAATCCGCGTAACGTACATGTATTCAGTATCCACCTCTTACTGCAATTCAGAGAACACAAATAACTTCTCACGTTGTCGTGTATCGATTTCTTGCAGGTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTA</genome_strand>
        <mrna_strand>CTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG.............................................................................................................................................................CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329372" ref_strand="+" ref_description="SGN-U329372        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:10453464-10454370 FORWARD | Aliases: None(evalue: 1e-19, score=92.4) genbank/nr: gi|42572949|ref|NP_974571.1| expressed protein [Arabidopsis thaliana] >gi|7487141|pir||T04431 hypothetical protein T18B16.70 - Arabidopsis thaliana >gi|2828285|emb|CAA16699.1| putative protein [Arabidopsis thaliana] >gi|7268705|emb|CAB78912.1| putative protein [Arabidopsis thaliana] (evalue: 8e-18, score=92.4)">
      <seq>caccaccaaccaattaaaacaatgtgaagagaagttgtaaagcaaatctagtgaagaagttcaaaaaaaaataaaaaaaaaataatggaaacatgttcatttccaaaaattgtattatctcctttaaatccactaatatcaaaaaacaaacactttcaaattcccaaatccaaacaatcacatataaaaatcacacctctttttgcaacactcaattctccaaaaggttttggaccttcccctaaaaaaattaccaaaaaatccaagaaaataccaaaacaagaaaatgaagatcaatacgacgatnacgatgataatgatgatgatgatgaacaagaaagaggagttataccagagatagtaactaatagaatgataagtagaaggggattttcagttggaattcctttgtttatgggtttattgttttttccttttttttattatcttaaggttggtttaaaaattgatgtacctacttgggtaccttttattgtgtcatttgtgttttttgggagtgccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88442" stop="89567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88742" g_stop="89267" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-U329372" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88742" e_stop="89267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTAT</genome_strand>
        <mrna_strand>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAAAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAAAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATNACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAAGGGGATTTTCAGTTGGAATTCCTTTGTTTATGGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339368" ref_strand="+" ref_description="SGN-U339368        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:10453464-10454370 FORWARD | Aliases: None(evalue: 2e-36, score=149) genbank/nr: gi|42572949|ref|NP_974571.1| expressed protein [Arabidopsis thaliana] >gi|7487141|pir||T04431 hypothetical protein T18B16.70 - Arabidopsis thaliana >gi|2828285|emb|CAA16699.1| putative protein [Arabidopsis thaliana] >gi|7268705|emb|CAB78912.1| putative protein [Arabidopsis thaliana] (evalue: 1e-34, score=149)">
      <seq>accaccaaccaattaaaacaatgtgaaaagaagttgtaaagcaaatctagtgaagaagttcaaaaaaaaataaaaaaaaaataatggaaacatgttcatttccaagaattgtattatctcctttaaatccgctaatatcaaaaaacaaacactttcaaattcccaaatccgaacaatcacatataaaaatcacacctctttttgcaacactcaattctccaaaaggttttggaacttcccctaagaaaattaccaaaaaatccaagaaaataccaacactagaaaatgaagatccatacgacgataacgatgattatgatgatgatgatgaaccagaaagatgacggataccagagatagcaactaatacaatgataagtagaatgggattttcagttggaattcccttggttattgggttattgcggtttcctttttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88443" stop="89467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88743" g_stop="89184" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-U339368" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88743" e_stop="89184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTA</genome_strand>
        <mrna_strand>ACCACCAACCAATTAAAACAATGTGAAAAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCGCTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCGAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGAACTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAACACTAGAAAATGAAGATCCATACGACGATAACGATGATTATGATGATGATGATGAACCAGAAAGATGACGGATACCAGAGATAGCAACTAATACAATGATAAGTAGAATGGGATTTTCAGTTGGAATTCCCTTGGTTATTGGGTTATTGCGGTTTCCTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346257" ref_strand="+" ref_description="SGN-U346257        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14948171-14952407 REVERSE | Aliases: T32F12.2, T32F12_2(evalue: 3e-53, score=205) genbank/nr: gi|21593118|gb|AAM65067.1| major intrinsic protein, putative [Arabidopsis thaliana](evalue: 2e-51, score=206)">
      <seq>agaaagggcatggaccatatccatatccttattttgatgcaatctctaagggagttttatataattaccaaacaggaagttcaaattctactccagcttgggattttacaagtactggtcatttccaaacaccaactagaactgatcctagattaagtgatgtgatgttggaagatgaagaggaggctaaagagtggacagcacaagtggagcctggaattcagattacttttgattctcttcctcatggtggaaatgatcttaaaagaatcagatttagtcgggacgtgttcaacaaatggcaagctcaaagatggtggggtgaaaattatgacagaattatggagctttacaatgttcagagatttaataagtatgctcttcacacaccctcacagtctgaggatgggagagattcaaattattcgtcaaggccgggatctgcaagggatttccaacaatacaatgctggattaggtgctcatgtccctagtttcccaaagggcagtggggtatcaagaacgacaacctcctctagagacgaagcttcagtttctgtaagtaatgctagtgatatggagtcagaatggatagaaccagatgaacctggagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99899" stop="101302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100199" g_stop="100478" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100479" i_stop="100589" i_length="111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100590" g_stop="100719" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="410" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100720" i_stop="100797" i_length="78">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100798" g_stop="101002" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="615" r_length="205" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-U346257" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100199" e_stop="100478"/>
          <exon e_start="100590" e_stop="100719"/>
          <exon e_start="100798" e_stop="101002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGGCATGGACCATATCCATATCCAGATTTTGATGCAATCTCTAAGGGAGTTTTATATAATTACCAAACAGGAAGTTCAAATTCTACTCCAGCTTGGGATTTTACAAGTACTGGTCATTTCCAAACACCAACTAGAACTGATCCTAGATTAAGTGATGTGATGTTGGAAGATGAAGAGGAGGCTAAAGAGTGGACAGCACAAGTGGAGCCTGGAATTCAGATTACTTTTGATTCTCTTCCTCATGGTGGAAATGATCTTAAAAGAATCAGATTTAGGTATCTATTCATCATCTCCTTTCATTTTACTCCCCGCGTTTCAATTTTATTTTGTCTAGTTTTGACTTGATACGTCGTTTAAGAAAGTAGATTTGATTTGTTATTTTGAAGTCGGGACGTGTTCAACAAATGGCAAGCTCAAAGATGGTGGGGTGAAAATTATGACAGAATTATGGAGCTTTACAATGTTCAGAGATTTAATAAGTATGCTCTTCACACACCCTCACAGTCTGAGGATGGGGTAAGACTTTCTTTGTCTGGTTTTGATTTGACACAGAGTTTAAGAAAGTAAATGAAATTTAAGGTCTTTTTTCTGCAGAGAGATTCAAATTATTCGTCAAGGCCGGGATCTGCAAGGGATTTCCAACAATACAATGCTGGATTAGGTGCTCATGTCCCTAGTTTCCCAAAGGGCAGTGGGGTATCAAGAACGACAACCTCCTCTAGAGACGAAGCTTCAGTTTCTGTAAGTAATGCTAGTGATATGGAGTCAGAATGGATAGAACAAGATGAACCTGGAGTGT</genome_strand>
        <mrna_strand>AGAAAGGGCATGGACCATATCCATATCCTTATTTTGATGCAATCTCTAAGGGAGTTTTATATAATTACCAAACAGGAAGTTCAAATTCTACTCCAGCTTGGGATTTTACAAGTACTGGTCATTTCCAAACACCAACTAGAACTGATCCTAGATTAAGTGATGTGATGTTGGAAGATGAAGAGGAGGCTAAAGAGTGGACAGCACAAGTGGAGCCTGGAATTCAGATTACTTTTGATTCTCTTCCTCATGGTGGAAATGATCTTAAAAGAATCAGATTTAG...............................................................................................................TCGGGACGTGTTCAACAAATGGCAAGCTCAAAGATGGTGGGGTGAAAATTATGACAGAATTATGGAGCTTTACAATGTTCAGAGATTTAATAAGTATGCTCTTCACACACCCTCACAGTCTGAGGATGGG..............................................................................AGAGATTCAAATTATTCGTCAAGGCCGGGATCTGCAAGGGATTTCCAACAATACAATGCTGGATTAGGTGCTCATGTCCCTAGTTTCCCAAAGGGCAGTGGGGTATCAAGAACGACAACCTCCTCTAGAGACGAAGCTTCAGTTTCTGTAAGTAATGCTAGTGATATGGAGTCAGAATGGATAGAACCAGATGAACCTGGAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319795" ref_strand="+" ref_description="SGN-U319795        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ttcttctataaattctcctcttcgttcttctccaaatatcatctagggttagctcccaattctccagtcgccatcgattcagtggccgccattgataccataccgccggtattgtataatttgcttagttttagttttcatatagtaactgtattctgtttactttgcacttcgcaatcatataagcttcgctaaattctcaagttagtgcagtcttacagcgttagtgcgtataggaaaagctgaatttatcagcggcggccagacaaccgttgagatgaatccacagatgggtttcgtttttgctcctgtctactaatttcttctcacattttgctgttattatatctgtagttttttcaatttgatggtacaatttggaaattggggcgagttatcagtactcgtataacccaaagtatctatatcatcaagctgtctttgttgatgtagcatttgattttttctgttttccttcgggaagatgggaggattctatgttgtaatccgaagatggagatctcatatcctatagccttgtagagcggaatctctgctattactatttgggattgaccatgagaaatacattcaattcaacttaattttcatatcttcatgcctgtgatgaaatctattataaagaacaccatctttcgggactgaatggcccttaaggccttgttgtcaattctgcaattctgaggcttttatatgttatagttttgctttgcttgaactatgtgtaaactgctttgtgatttgagatggaagtgatgaatatttccccagatgatcgaagctgaaattactgagcgcttttcatgtattttctccttattaggagaaaatccaagccagatattctgatccatctccaattttcttccattttttctcttaaatcttcaaaaaaattgattattcagtgtttattatgatttttctgattgatttgaatatggatttgatgaatatttccccagatgatcgaagctgaaataactgagcgctttataatgcattttctcctctttaggggaaaatccaagccagatattctgatccatatgtattaatttcaattgttttctatgttttgattgttcatttgttagttgaatttgttgtatggagttgatgattatttccccagatgatcgaagctgaaattactgagcgctttttcatgtattttctccgttcaggggaaaattcaagccagatattctgatccatatacttacaatatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105965" stop="107820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106265" g_stop="107520" g_length="1256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1256" r_length="1256" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-U319795" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1256</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106265" e_stop="107520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTATAAATTCTCCTCTTCGTTCTTCTCCAAATATCATCTAGGGTTAGCTCCCAATTCTCCAGTCGCCATCGATTCAGTGGCCGCCATTGATACCATACCGCCGGTATTGTATAATTTGCTTAGTTTTAGTTTTCATATAGTAACTGTATTCTGTTTACTTTGCACTTCGCAATCATATAAGCTTCGCTAAATTCTCAAGTTAGTGCAGTCTTACAGCGTTAGTGCGTATAGGAAAAGCTGAATTTATCAGCGGCGGCCAGACAACCGTTGAGATGAATCCACAGATGGGTTTCGTTTTTGCTCCTGTCTACTAATTTCTTCTCACATTTTGCTGTTATTATATCTGTAGTTTTTTCAATTTGATGGTACAATTTGGAAATTGGGGCGAGTTATCAGTACTCGTATAACCCAAAGTATCTATATCATCAAGCTGTCTTTGTTGATGTAGCATTTGATTTTTTCTGTTTTCCTTCGGGAAGATGGGAGGATTCTATGTTGTAATCCGAAGATGGAGATCTCATATCCTATAGCCTTGTAGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGAAATACATTCAATTCAACTTAATTTTCATATCTTCATGCCTGTGATGAAATCTATTATAAAGAACACCATCTTTCGGGACTGAATGGCCCTTAAGGCCTTGTTGTCAATTCTGCAATTCTGAGGCTTTTATATGTTATAGTTTTGCTTTGCTTGAACTATGTGTAAACTGCTTTGTGATTTGAGATGGAAGTGATGAATATTTCCCCAGATGATCGAAGCTGAAATTACTGAGCGCTTTTCATGTATTTTCTCCTTATTAGGAGAAAATCCAAGCCAGATATTCTGATCCATCTCCAATTTTCTTCCATTTTTTCTCTTAAATCTTCAAAAAAATTGATTATTCAGTGTTTATTATGATTTTTCTGATTGATTTGAATATGGATTTGATGAATATTTCCCCAGATGATCGAAGCTGAAATAACTGAGCGCTTTATAATGCATTTTCTCCTCTTTAGGGGAAAATCCAAGCCAGATATTCTGATCCATATGTATTAATTTCAATTGTTTTCTATGTTTTGATTGTTCATTTGTTAGTTGAATTTGTTGTATGGAGTTGATGATTATTTCCCCAGATGATCGAAGCTGAAATTACTGAGCGCTTTTTCATGTATTTTCTCCGTTCAGGGGAAAATTCAAGCCAGATATTCTGATCCATATACTTACAATATGATT</genome_strand>
        <mrna_strand>TTCTTCTATAAATTCTCCTCTTCGTTCTTCTCCAAATATCATCTAGGGTTAGCTCCCAATTCTCCAGTCGCCATCGATTCAGTGGCCGCCATTGATACCATACCGCCGGTATTGTATAATTTGCTTAGTTTTAGTTTTCATATAGTAACTGTATTCTGTTTACTTTGCACTTCGCAATCATATAAGCTTCGCTAAATTCTCAAGTTAGTGCAGTCTTACAGCGTTAGTGCGTATAGGAAAAGCTGAATTTATCAGCGGCGGCCAGACAACCGTTGAGATGAATCCACAGATGGGTTTCGTTTTTGCTCCTGTCTACTAATTTCTTCTCACATTTTGCTGTTATTATATCTGTAGTTTTTTCAATTTGATGGTACAATTTGGAAATTGGGGCGAGTTATCAGTACTCGTATAACCCAAAGTATCTATATCATCAAGCTGTCTTTGTTGATGTAGCATTTGATTTTTTCTGTTTTCCTTCGGGAAGATGGGAGGATTCTATGTTGTAATCCGAAGATGGAGATCTCATATCCTATAGCCTTGTAGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGAAATACATTCAATTCAACTTAATTTTCATATCTTCATGCCTGTGATGAAATCTATTATAAAGAACACCATCTTTCGGGACTGAATGGCCCTTAAGGCCTTGTTGTCAATTCTGCAATTCTGAGGCTTTTATATGTTATAGTTTTGCTTTGCTTGAACTATGTGTAAACTGCTTTGTGATTTGAGATGGAAGTGATGAATATTTCCCCAGATGATCGAAGCTGAAATTACTGAGCGCTTTTCATGTATTTTCTCCTTATTAGGAGAAAATCCAAGCCAGATATTCTGATCCATCTCCAATTTTCTTCCATTTTTTCTCTTAAATCTTCAAAAAAATTGATTATTCAGTGTTTATTATGATTTTTCTGATTGATTTGAATATGGATTTGATGAATATTTCCCCAGATGATCGAAGCTGAAATAACTGAGCGCTTTATAATGCATTTTCTCCTCTTTAGGGGAAAATCCAAGCCAGATATTCTGATCCATATGTATTAATTTCAATTGTTTTCTATGTTTTGATTGTTCATTTGTTAGTTGAATTTGTTGTATGGAGTTGATGATTATTTCCCCAGATGATCGAAGCTGAAATTACTGAGCGCTTTTTCATGTATTTTCTCCGTTCAGGGGAAAATTCAAGCCAGATATTCTGATCCATATACTTACAATATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319794" ref_strand="+" ref_description="SGN-U319794        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ctttgagacctgaatttattgattttgatgtcaactacaagcaattcttctgaggattttccccattgtttgaatactgtattctttttaactttttatatcgatgtacaaatgtacttagaaaaacttgatcatgaggttttagagatgtcaatagttggatcttgctattatttatggattcagtcatttgagataaataaatgtcactttttgttttatactttgatatttcattttgatggtaagactattgatattggggcgagttttttggtactcgtataatccgatgtatccatatcatcatagaataagctgtctttgttgatttagcactttgttttttctgttttcctttgggaagattgaagaatcctgtgttgtaatccgaagatggcgatctcatatcctatagccttgtggagcggaatctctgctattactatttgggattgaccatgagatatacattcaattcaacttaattttatatgcttagctaatctttgatgaaatttgatctttttttgtttttatgaactattattgttgaattttgtgtttatggatatgatgattatttccccagatgatcgaagttgaaattactgagcgcttttactgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108105" stop="109333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108405" g_stop="109033" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-U319794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108405" e_stop="109033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAGACCTGAATTTATTGATTTTGATGTCAACTACAAGCAATTCTTCTGAGGATTTTCCCCATTGTTTGAATACTGTATTCTTTTTAACTTTTTATATCGATGTACAAATGTACTTAGAAAAACTTGATCATGAGGTTTTAGAGATGTCAATAGTTGGATCTTGCTATTATTTATGGATTCAGTCATTTGAGATAAATAAATGTCACTTTTTGTTTTATACTTTGATATTTCATTTTGATGGTAAGACTATTGATATTGGGGCGAGTTTTTTGGTACTCGTATAATCCGATGTATCCATATCATCATAGAATAAGCTGTCTTTGTTGATTTAGCACTTTGTTTTTTCTGTTTTCCTTTGGGAAGATTGAAGAATCCTGTGTTGTAATCCGAAGATGGCGATCTCATATCCTATAGCCTTGTGGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGATATACATTCAATTCAACTTAATTTTATATGCTTAGCTAATCTTTGATGAAATTTGATCTTTTTTTGTTTTTATGAACTATTATTGTTGAATTTTGTGTTTATGGATATGATGATTATTTCCCCAGATGATCGAAGTTGAAATTACTGAGCGCTTTTACTGTA</genome_strand>
        <mrna_strand>CTTTGAGACCTGAATTTATTGATTTTGATGTCAACTACAAGCAATTCTTCTGAGGATTTTCCCCATTGTTTGAATACTGTATTCTTTTTAACTTTTTATATCGATGTACAAATGTACTTAGAAAAACTTGATCATGAGGTTTTAGAGATGTCAATAGTTGGATCTTGCTATTATTTATGGATTCAGTCATTTGAGATAAATAAATGTCACTTTTTGTTTTATACTTTGATATTTCATTTTGATGGTAAGACTATTGATATTGGGGCGAGTTTTTTGGTACTCGTATAATCCGATGTATCCATATCATCATAGAATAAGCTGTCTTTGTTGATTTAGCACTTTGTTTTTTCTGTTTTCCTTTGGGAAGATTGAAGAATCCTGTGTTGTAATCCGAAGATGGCGATCTCATATCCTATAGCCTTGTGGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGATATACATTCAATTCAACTTAATTTTATATGCTTAGCTAATCTTTGATGAAATTTGATCTTTTTTTGTTTTTATGAACTATTATTGTTGAATTTTGTGTTTATGGATATGATGATTATTTCCCCAGATGATCGAAGTTGAAATTACTGAGCGCTTTTACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319793" ref_strand="+" ref_description="SGN-U319793        Tomato 200607 #1 [8 ESTs aligned]">
      <seq>agttgaaattactgagcgcttttactgtattttctccttattaggagaaaatccaagccagatattctgatccatcacttatgttttgcatttatagagttgaaatttgtacatttatgtcttccagtgctattattccaatttctgtgtttttttaaaacaatttttgatgaaatatattgataattatggtgtgtaaggatgatgaagaaatcattcggattcccactgatgtttttaatgtgattactacaaccagctacttctgacttcacatcatagcactaccttttcctcttttatctttttttttaacttttatgtattgtttcttgttgttactgatattggcttgaagattgtaatttttggaattgtttaacaatggttgttttgtactctacttatggatttaaatctatttatatgaatcaatcaattgctcttatcttcatttgaatgtagtacaaacatattgacctgttgctacgtgataaccatccttgtaaatggaagaacagtcggcgacaatgcgaagcaatttcagggagcagaacaaggtggttgagggaattgttgaaattttggaacatcaacttttcttcatgttttcagttatagtatagacattttgtgaactatgtaatacttgtttaaactaaataatatgatgtgatgcttcacaatacaatatacatatatttcgatggctatctaatgaagttcaaaattttttatcctatatcaagaagtgcatcgtctcatagttcatatgtagagaaaggtctgtttatatctcatttaaatcttcaataatttggtgatgggagatatggggtnaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108705" stop="110147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109005" g_stop="109840" g_length="836"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="836" r_length="836" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="841" polyA_stop="850"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-U319793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109005" e_stop="109840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAAATTACTGAGCGCTTTTACTGTATTTTCTCCTTATTAGGAGAAAATCCAAGCCAGATATTCTGATCCATCACTTATGTTTTGCATTTATAGAGTTGAAATTTGTACATTTATGTCTTCCAGTGCTATTATTCCAATTTCTGTGTTTTTTTAAAACAATTTTTGATGAAATATATTGATAATTATGGTGTGTAAGGATGATGAAGAAATCATTCGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAATTGCTCTTATCTTCATTTGAATGTAGTACAAACATATTGACCTGTTGCTACGTGATAACCATCCTTGTAAATGGAAGAACAGTCGGCGACAATGCGAAGCAATTTCAGGGAGCAGAACAAGGTGGTTGAGGGAATTGTTGAAATTTTGGAACATCAACTTTTCTTCATGTTTTCAGTTATAGTATAGACATTTTGTGAACTATGTAATACTTGTTTAAACTAAATAATATGATGTGATGCTTCACAATACAATATACATATATTTCGATGGCTATCTAATGAAGTTCAAAATTTTTTATCCTATATCAAGAAGTGCATCGTCTCATAGTTCATATGTAGAGAAAGGTCTGTTTATATCTCATTTAAATCTTCAATAATTTGGTGATGGGAGATATGG</genome_strand>
        <mrna_strand>AGTTGAAATTACTGAGCGCTTTTACTGTATTTTCTCCTTATTAGGAGAAAATCCAAGCCAGATATTCTGATCCATCACTTATGTTTTGCATTTATAGAGTTGAAATTTGTACATTTATGTCTTCCAGTGCTATTATTCCAATTTCTGTGTTTTTTTAAAACAATTTTTGATGAAATATATTGATAATTATGGTGTGTAAGGATGATGAAGAAATCATTCGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAATTGCTCTTATCTTCATTTGAATGTAGTACAAACATATTGACCTGTTGCTACGTGATAACCATCCTTGTAAATGGAAGAACAGTCGGCGACAATGCGAAGCAATTTCAGGGAGCAGAACAAGGTGGTTGAGGGAATTGTTGAAATTTTGGAACATCAACTTTTCTTCATGTTTTCAGTTATAGTATAGACATTTTGTGAACTATGTAATACTTGTTTAAACTAAATAATATGATGTGATGCTTCACAATACAATATACATATATTTCGATGGCTATCTAATGAAGTTCAAAATTTTTTATCCTATATCAAGAAGTGCATCGTCTCATAGTTCATATGTAGAGAAAGGTCTGTTTATATCTCATTTAAATCTTCAATAATTTGGTGATGGGAGATATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340577" ref_strand="+" ref_description="SGN-U340577        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr4:17900603-17902154 REVERSE | Aliases: F20D10.270, F20D10_270(evalue: 2e-14, score=54.7) genbank/nr: At4g38150/F20D10_270(evalue: 1e-12, score=54.7)">
      <seq>cgaattgtgtttcaactcgctgctacggagcattgagcatttgctgccgccggctgtatcgctcgccgccgttcaatccttccgaggatagagccaactttggcgaccttgaaaaataggtagcgctgggtgttattttgaagggaaaagataagcattatgagaacaacattagtgagacagaagggtatcaagatttattggaaatattacagtagtctttgccatcccaaggtgaatgagacacgttcttcaacaaacttgcgttcatttagcagctccaacaaattcagcgattactctgatgaatccgctgaatccaactatcctcctcctcctgagcctataccaaataggcccttacgagctgattccaggaggcccttcaatccatcccaaagacagcatccaagcaacagaagcagccccaatcattctacaacttttagaagatccagtgagaacaatgaaagtcaaatgaaatcccaggatagtgaagattttctgaaaagatttcagcttggatttgatcgtaaagaggaaaacccaaacacaaaccccaaagctgaaagtagagactgtcctgtttcagaggcacctncagctccaccagaagatgctgatgagatattcaagaaaatgaaagaaactggcttaatacctaatgctgtagcaatgcttgatgggctctgcagggacgcttggtacaggaagcgatgaagctctttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="113400" stop="110271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113100" g_stop="113015" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113014" i_stop="111217" i_length="1798">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111216" g_stop="110571" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="731" r_length="645" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U340577" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113100" e_stop="113015"/>
          <exon e_start="111216" e_stop="110571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTGTGTTTCAACTCGCTGCTACGGAGCATTGAGCATTTGCTGCCGCCGGCTGTATCGCTCGCCGCCGTTCAATCCTTCCGAGGTATGTGAACTCGATTTTTCTCTATTTTATGCTTTTATTTCTGAAAAACTGAATTAGATAAACTGATCTGAAGAAGAAGAAGAAGAAATGTGTTCGTTCAGACTGTCTTTGTAATGAGGGAAAACAATGAATTGATTTATTTATTTTTTTGATACCGCACGAAGAAGAAGTATTAATGTGTATTGATAAATTTGTGGTTTTCAGAAGAAGCTAAAATTTGTAGTTTTTTTTTTCTTCTTCTATATTTACCAAATGAATTGGAATTCCTAATTATTTCAATGTTTGAGAATTTGATGTATTTAGTAACTAGGAGAAAATAATTTGCCAGTTTCAAGATTTGTATTATCTTTTGGCTTTTTGAGATACAAGCTAAGTGAACTGAACCATTATTTTGAAATGTTGTATATTTGAAAAAAAAATTTGATATGAGGAGTATTGCTCAGAGAATTAGTCGATTAGTTTTGTACAGTATAGCTCGGAGAATTAGTCGATTCGATTCTTGATAAGCAGAAGTGGTGGTGAACAGTATCTTTTATATGGTACCCTAACATCTACCATCCTCGACTGTTCTCCCTAGGAGTCAATAGTATCACTCTCCGTGTTGCTCTCGTGGTGAGTCGAGCCCCCCAACTTCATAGTTGGAGGTGGAAGGCGTTTTCCGCTTGAGCTAACCCTCTCTTTGTTTAGAAGTGACACACAAAGTGGGACTGAGACAGAAATGTTTAGTGAATGCAATGACTCCCACCCACTCCCCTTTATGTATTGTGGGTGTGGGAATTGCTTCCGGGGAAGAGAGAGGCGGGATGTTTCGACATAAGAGTATGAAGAAGCATATGATAAATATAGAGACTGCTAAATGATTAGGTGATAATTGTTTTTAGTATGACTCCTCTTCTTGGACTTATCTTATATATATACTTCTCTTCTACTTTGGCAATACAAAACAATCAACTCAGACAGTTGAGCGACTAAGATTCTCTATAATTATATTTGCTTAGTTTTGCAAGTCTCACAGACTAAATTTGAAAAACCCGATCAACAAAGTCAAAATTCGTATAGCCAAACAACTGAGCGACTAAAGAGTCCCTTTAGCTATAGTTGCTTAGTTTTGTAAGTCTCATAGGCTGAATTTGATAAACCTGGCCAACAGTGGGTTTAGAAGATCACAAAGAAAGCCCAGTTTAACTCAGCTTCTAGACCTAATTCTCCAAATCTCCTTCTATATATTCTCTCTTTCTTCGTATCAAAAATCCATCTAGGGTTAGCTCCCAATTTTCTACACACTGGGGATTCAGTGGCTGCAATCGCTACTATACTGCCAATCTAGAATTTGCTTCGTTTTGCACTTTGCAATCATATAAGCTTCGCTAAATTCTCAAATTAGTGGTCTTACAGTGTTAGTGCGTATAGGAAAAGCTGAAGTTATCAGCGGCAGCCAGACATCTGTTGAGATGAATCCACAGATGCGTTCTGTTTATGCTCCTGTCTACTAATTTCATCTCACATTTTGTTGCTACTATATCTGTAGTTTTTTTATTTTGATGGTACAATTTTTGAAATTGGGCTGAGTTTTTCAGTACTCGTATAACCCCCAAAGTATCTATATCATCATAGAATAAGCCGTCTTTGTTGATGTAGCATTTGATTTTTTCTGTTTTCCTTTGGGATGATTGAAGATTCATCTGTTTAATTTGTGTGGCTACATGAACTTACACAATAAAAAAGTGTGTTAATATGTCTTTGATTGCACTATATGAAAGTCTATTCAACAGGAGTTTTATCTCGTCTGGAATTACAGGATAGAGCCAACTTTGGCGACCTTGAAAAATAGGTAGCGCTGGGTGTTATTTTGAAGGGAAAAGATAAGCATTATGAGAACAACATTAGTGAGACAGAAGGGTATCAAGATTTATTGGAAATATTACAGTAGTCTTTGCCATCCCAAGGTGAATGAGACACGTTCTTCAACAAACTTGCGTTCATTTAGCAGCTCCAACAAATTCAGCGATTACTCTGATGAATCCGCTGAATCCAACTATCCTCCTCCTCCTGAGCCTATACCAAATAGGCCCTTACGAGCTGATTCCAGGAGGCCCTTCAATCCATCCCAAAGACAGCATCCAAGCAACAGAAGCAGCCCCAATCATTCTACAACTTTTAGAAGATCCAGTGAGAACAATGAAAGTCAAATGAAATCCCAGGATAGTGAAGATTTTCTGAAAAGATTTCAGCTTGGATTTGATCGTAAAGAGGAAAACCCAAACACAAACCCCAAAGCTGAAAGTAGAGACTGTCCTGTTTCAGAGGCACCTCCAGCTCCACCAGAAGATGCTGATGAGATATTCAAGAAAATGAAAGAAACTGGCTTAATACCTAATGCTGTAGCAATGCTTGATGGGCTCTGCAAGGACGGCTTGGTACAGGAAGCGATGAAGCTCTTTGGC</genome_strand>
        <mrna_strand>CGAATTGTGTTTCAACTCGCTGCTACGGAGCATTGAGCATTTGCTGCCGCCGGCTGTATCGCTCGCCGCCGTTCAATCCTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGAGCCAACTTTGGCGACCTTGAAAAATAGGTAGCGCTGGGTGTTATTTTGAAGGGAAAAGATAAGCATTATGAGAACAACATTAGTGAGACAGAAGGGTATCAAGATTTATTGGAAATATTACAGTAGTCTTTGCCATCCCAAGGTGAATGAGACACGTTCTTCAACAAACTTGCGTTCATTTAGCAGCTCCAACAAATTCAGCGATTACTCTGATGAATCCGCTGAATCCAACTATCCTCCTCCTCCTGAGCCTATACCAAATAGGCCCTTACGAGCTGATTCCAGGAGGCCCTTCAATCCATCCCAAAGACAGCATCCAAGCAACAGAAGCAGCCCCAATCATTCTACAACTTTTAGAAGATCCAGTGAGAACAATGAAAGTCAAATGAAATCCCAGGATAGTGAAGATTTTCTGAAAAGATTTCAGCTTGGATTTGATCGTAAAGAGGAAAACCCAAACACAAACCCCAAAGCTGAAAGTAGAGACTGTCCTGTTTCAGAGGCACCTNCAGCTCCACCAGAAGATGCTGATGAGATATTCAAGAAAATGAAAGAAACTGGCTTAATACCTAATGCTGTAGCAATGCTTGATGGGCTCTGCAGGGAC-GCTTGGTACAGGAAGCGATGAAGCTCTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U312445" ref_strand="+" ref_description="SGN-U312445        Tomato 200607 #1 [22 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L13 (RPL13B) / breast basic conserved protein 1-related (BBC1) | chr3:18177772-18179565 REVERSE | Aliases: T2J13.150(evalue: 3e-85, score=311) genbank/nr: gi|76573319|gb|ABA46764.1| unknown [Solanum tuberosum] (evalue: 1e-90, score=336)">
      <seq>aaaaacttcagctttgctcgatttctcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgctaggttgaagagagcagctgaagctgagaaggaagagaagaaataagacatttctaatgtcttatagcccttgcacactagcattgctaaattttttttgcacgagtctaaatgatgaattatttttgagtactattatttcatgtaatttttttttccgtactcgtcgatggagtctgttacgacgagtcaagactataactcccatagtagtatatccttaaaacgtaaggttttggttatattcttgctcttgatgtgtttgatttgttctctgcatcgatatttatccaacgagttgtgttatatacgatctgtagttgttttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="113736" stop="117044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114036" g_stop="114063" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114064" i_stop="115241" i_length="1178">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="150" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="284" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="443" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116239" g_stop="116743" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="948" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="949" polyA_stop="961"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-U312445" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114036" e_stop="114063"/>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTCAGCTTTGCTCGATTTCTCGGTGAGTTTCAGATAGATTTGCTAATGTTTTGATACATTATCGTTTAATTTTGCTTATAGAATTGTTAGTGTAGTTTGAATTTGCTTTCTAATGAGCTTATTGTTATCAAAATGAGTGAATAATTGTGGTTTTCCGGTAGTTTGTTTGGTGTTTTCTGGATTTGAGGCCGGAAATGGTGAGCGGAAGTGTTGAGAGGGTTCTGAGAAACTGTAAAATGAATTTTTTGGTATATTTTGATTGATATGTTGTTTATTGTTTTTGTTTATTTAGGAGTTAGTGTTTTTGCTTAGATGATGATGATTGATTAGTTTAGATTGTTATGGATATAGTTAGATGGAATTTCAGTTAGTGAACCATTGACTGAGTTCGTAATTTCAATTCCGGAGGTGATAGGTGTCCAGTGTGAAAGCTGGACCGGACACCACTGTTGTTGAACACTATCAATTTGGGTTCAATTGGAGAATGATGGCAGGGTGGTGTGGTGGAATGCACTTGTAAATATGAGAGTTGCTTTTGCCTATGTTAGTTTATGTTTTGTTTGGCCTATCTAGTTGGACTGCCTATTTTACTAAGATGTGTTCGTTCTGATCCTCTCAAGACATCCACCTATTTATGTGATTACGCTTTCATTTTGCTCCAGGAATGATATCTTCTATTCATATTGATAGTGTTTGTATGGTGTGGTATTCTGTCGTATTGATGTATGGGTAGATAAATGAAGGTGTTAAATACTGTTTATCTTTGTTTGTGTTTTTGGTTCGGTAAAATTGGTATTCAGTGTCTTGGAAGTTAATGAATGTGCAACTTTAGCATAAATGCTCAGGGACTACTGCTACCCCGGTGTCCTTTGAACTTCTTTGTATTTCATTTTGATAAAATCACAAAATTGAGCTTATTCTTGAAACTTTTCATGCTGTTTGAATCGTAACTACTAGATACTTCTTGTTTTTTATTTTAGTATAAGTTCTTAAAATGCTTACCATATTATTCCTGTGTTATTTCTTGTTTTTAAATCATAATGTTTACATATGCTTTCTCAAATTGCTTTTTGAATTTCATAGACCTACTACTTTAATTGAAAAACTATGTTCCATTGCATGTTGATTGGTGCTTTGTTATCCTCGTCATATATTTCCTTAGGTGTTTCCAACTCTTAGTACCTTAATTCCTTGTGTCAGCATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTTATATTCTTGCTCTTGATGTGTTTGATTTGTTCTCTGCATCGATATTTATCCAACGAGTTGTGTTATATACGATCTGTAGTTGTTTTAG</genome_strand>
        <mrna_strand>AAAAACTTCAGCTTTGCTCGATTTCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTTATATTCTTGCTCTTGATGTGTTTGATTTGTTCTCTGCATCGATATTTATCCAACGAGTTGTGTTATATACGATCTGTAGTTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326875" ref_strand="+" ref_description="SGN-U326875        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | integral membrane family protein, contains Pfam profile:PF00892 integral membrane protein DUF6 | chr4:10489096-10491668 REVERSE | Aliases: None(evalue: 8e-78, score=287) genbank/nr: Protein(evalue: 3e-81, score=291)">
      <seq>agatttggatgtaggtcacttcaattcgttgaaatctcagctaaattcttgattttgaaccaattagcgaaaaccccaattcatgaaaacaactaggtgactgaaattttctgttaaaaatcatactttctgttcattctatagcttaattatcaagaatcttgaaaccccatctcaccaaccatcactattttccaccgattttatcatcacagtcgtttaggggtataaaggggtggtgggggtggggtggattgtgatgaaatgataaaaatggcagctgtatcagtgggaaatgggaatgaggtatggagagctcatggaacaatggcgatgatacagcttttgtatggtggataccatgtgattacaaaagtggcactcaatgtgggaatgaatcaaattgtgttctgtttgtatagggatcttcttgctctatctattcttgcaccagttgcctatgttcgcgaaaagaggtcgaggattcctttgaataggcggcttctgctatccttcttctttctaggattaactggtatttttgggaaccaacttttgtttcttattggtcttggttacacaaatccaacatatgctgcagccgtgcaacctgcaataccagtcttcacattcatatttgcagtattgatgggtacagaaacagtgaagctttttactgtggaaggtcaagcaaaggttggaggtacgattgtttgtgtttctggggcaatcttaatggccatcttccgtggacctgtggtgtttggagacagaagctcagaattcatacacagtgatataagtgctaagggtcagccagagcctactggatggttaatgtcaagtttcgtggaattgggttttgatgatggccacctcggtgttttatgcttaatangaaactgtatgtgcatggcagcatacttagctattcaggctccagttttggcaaataccctgcaagtatatcagtgacggcatattcatacctttttggntgccttttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="123396" stop="118161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123096" g_stop="122624" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122623" i_stop="121393" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121392" g_stop="121330" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="536" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121329" i_stop="121216" i_length="114">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121215" g_stop="121099" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="653" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121098" i_stop="119988" i_length="1111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119987" g_stop="119705" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="936" r_length="283" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119704" i_stop="118536" i_length="1169">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118535" g_stop="118461" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="937" r_stop="1010" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U326875" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1011</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123096" e_stop="122624"/>
          <exon e_start="121392" e_stop="121330"/>
          <exon e_start="121215" e_stop="121099"/>
          <exon e_start="119987" e_stop="119705"/>
          <exon e_start="118535" e_stop="118461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGGATGTAGGTCACTTCAATTCGTTGAAATCTCAGCTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCATGAAAACAACTAGGTGACTGAAATTTTCTGTTAAAAATCATACTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATTGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAAGTTAGTTCTTTTTTTTTCCCCTTTATGTTGCTTTTGAATCTATAATCTTACCATGTATCTGTTTATGAATAGATAGATTTAGTTTTATACTGTGGTGTTTGGGGTCAGCTTGTGATTACTGATCCACTGAGCCTGCTTATAGGTACAAGCTATGTTGCTCGAACTCTTCCTCCGAAAATCCACTGCTTTTGGTGTGTTTTGGAGGATCCGACATGAAACTTGTGAAGTTGTCTTTTGTTTGGGTAAATCTGTCTACCAAGTTTTAGAGCAAATGAACTTACACTAATTGTTGTAGCTAGGATTAGGAGCTGGGATCCCAAAATGTTTAAGCTTGTGCCTGAACTGCTCAGGCATCGTTTTGAGGACATAGATTTACTTTTCTGATTGAGCCAGGGTATATTTGTTAAAGAGATCTGCACTGAATTATTTGTAAGAAGAATGGACTGAGAGATGCATTTCTGAAAAATAGACGTTGCTATGGTTAATTAATGTTGAGTCCGTTCTACATATTAAGTTAGAAATTCTAGATTTACTGAAATTTGTTTGCTACAATGTCTAATAGTATGTGCTTGTGAGAGTCTGGTCAATTGTTTGAGCTTGTTTACCTCATTTCAACCTGTATTTGCATCTTGAGCTGTTGTAGTTGAAGTGATTTTACATTTTTAAAAGTTTGGTTTGTTAATACTTAAATCTTTCATAAATTATTATGTTGTCTTCATGATGGGGTAATATTCTTTCTGTTTCTAATTGATACTTGGTAATCCACTATGATTACACCTCAAATTGTTCTGCTGTTCTCCGATTTGGAGGTTTGAAAACGATTCCTCATAAAAAGTAAGGACTTGCTTATCTTGTTGTGTGAGTTGGATACAAAGAAAAGCTTTTAGATTTAGTAAAATGGAATTACAATACCAATTTAAGAGCAAGATTAAAGGCGTCTATCCATACGTTCTCAAACTTCAGATACAAATACATGTGCATTCTCAAACTTCACATAAGAATTCTTTGTTGATATTCTGACTAGTAGCTTGAAATTGTCACTCATGTCTCTGGCTTTTACTCTTTCTTAGTTGTTACCTTGTATCCTTGTTCGTACATTTTTCCTTAAACCTCTACTTGAAAGGTTTTGGGCTAAACGTATGCATCTAAACTATTGTCTTACTTTTGGAAACTCTTTGAAAAATAGTTTTCAGTATCTGAACTAATAATGTTGCCTTTCCTTTATGTCTAGGAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGGGTAAGTTTGATGTGCCTGCTATTTCTGTGGTTAACTTGCATAGTTCTTACACTGAACTAAAACTGTTCCTTTTTTTTTTAAATGTTTTTTCGTTTTTCTTGGCAACTGCAACAGTATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGGGTAAGTAAGAAATCAACCCCCTTTGTCTTCGATTCTGTCTTTGTATCTGTTTCTCTTTCAAGATATATTCATGTACATTTCTGTACTCAATTGGGAGATTACTTTGCATAGGGTGAAAAGATAGCAGTTCAGTCATACCATTGTTTTCTTTGAGAAAACCTGAAATTGCCTGCGCCTAATTGATTTAGTAGTTCCTACAATGTGAATCAGGATTTCCATCACTATGATACTCCATATCTTCCAAATGTGCAGTGGTGAAGTTAAAACTTCTATTATATGTATTATTTTGGTCATCGACAAATCTGCATTCAGGGTGAAATAATGTTTTGGGTGTTTAGATGAAGTTCCATTATTATAGAACAGTATTGCAGTCGAAGTAATATAAGTGAACCAGTTCAGTAATATCAATATAACCCTTAGATACAGGGAGACTTTACCGAGAAATATGAACATTATTGTTGAGGGTTACTAAAATCTTTAGTTATCAACTGGTTCTTGAAAAGAAAGGAAGCTATGCACATTTTATAACTATCTACATTTTCCACAAGAAGAATTGGGGTCAATCACAAACAAATTATTTGGGGGGTACTTTTTGAAGATATAAGAGAGGACCTGCTAAATTTTTGTCTTTGTTGCTATTCCTATTTTATTTTGATAATCGTGGTGTCTAGGCCAGCTAGCATGCACCTCGAGTAATTCCATGGGATACTATTACCTCCCAGCAACAACTACCAGGTAACTCTATCCACTAAGGCTTAGGTTGATGGGGAGAAATCATCTAGTGATTTTGTTTCCGCTGGTGAACCTGAGACCTCGTACTTCTCCCACTTCATCTACCACCAGACGCACCCTTGGGTGCTATTGCTATTGGCCTGTTTAGTTATGACATTTTTCAGGTCTATAATTTTATTTTAGTAATAAAAGCAGGGCAAGATTGACACTCTTGCTACTTATACAATAGGTTCTTTTTTTCTTTTTCTCTGCTAGGCTTTCTTGTGCCTTAAACTACCAATCTGCCTTCTTTTTGTGTATTTTTCATGTATTTGCACATTCTGTAGTTTGTTGTAGTTGATGATCTGCTCAACTTTACTCTTAAATGTTACTTATGCAGTACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGTTTGTGTTTCTGGGGCAATCTTAATGGCCATCTTCCGTGGACCTGTGGTGTTTGGAGACAGAAGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCGTGGAATTGGGTTTTGATGATTGGCACCTCGGTGTTTTATGCTTAATAGGAAACTGTATGTGCATGGCAGCATACTTAGCTATTCAGGTAATTTGATAATCTTTTTGCTTTCATTGATTTCAATTTACTTGAGGAGAACCAGATTACTGTTCAGTAACTAAACTGAAAGGCTGCACCCAGATATCTAAATACTAAGATATACAACGTGATGGCTGCAAACCTTAGAGACTAGGTTCAACTTTCAGCAGAGTAATAAACGCTAGGCGAATTCTTTCTATCACCTAAGCCTTTGTGGGAGAGTTATCTAGTACCTTTGCTGATGGGAAGTAGTAGGTACTTGATAAGGTATACGCGAGTTGGCCCAAACACAATCACTGTAAAAAAAAGTTTATTGCGCCAATTGATCAATTCCTCAAATGACATGCTGCTAAATGTTAATTGACATATTTTTATTGGGTACATATGCTTGTTCCTAAGATTGACAGTCTGAAACTCAATGAGACAACCTAGCAAGGGAATGAAAGGAGACTTGCCTCAAAATGGAAATGCAAAAATTGATTCCATACATCAATAGAATCGTGAACCTTTGGATGTTCAGAGAGTTTAACTGTAAGAATAAATGGAAAAGTAAAACTTGATTGGTCTTGTTGAGTTATTTTTCAACTTGACCCTCACTATTGACTGTGATGCTAATGGATGAAATATTATTTGTTCATTTTTCTCTGTAAAGTTGTTCAATTGATCCATCAAGGATAGCAGGGGTATAAGTGCCAACAAACTGGCAGGGGGGAGCAGCATGGAAAGCGAGGCTCCACACCCTTCTCCGTGGGCTTTAGGAATCGAAAAGCTCTTAGTCCATAATTCTAATGCCCCAATCATGTCCTCTGACCACATGTTATCACTCTTTTTGTTAAATTCTTTTCCTTGGATCCATTAATTTCTACTGATCAGATCGAAAAATTACTTGAAACCTTCAAGTTTGATTTTAGGCCTTTTTTTTATTATATGAAATGATTCCAAGTGTCAAAGTGTTTGATTATTAGGTGATTTTATAAGAAATGATTTCCTTACTAAAAAACATAACAGCCTATATTTTTCTTGGTGAACGATGTTCTTTTTTGGGATATAGTTGGCAATTTAGATTTTGGCATGTCTTGAACCATTGTCTAAAACATCCTTGACTTTTCCAAATAAACCGTTTCTGTTTGTATTGTTTGGGAATATTCTAACTTGACTGAATTTTAAGAAATTTTCAGGCTCCAGTTTTGGCAAAATACCCTGCAAGTATATCAGTGACGGCATATTCATACCTTTTTGGTTGCCTTTTAATG</genome_strand>
        <mrna_strand>AGATTTGGATGTAGGTCACTTCAATTCGTTGAAATCTCAGCTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCATGAAAACAACTAGGTGACTGAAATTTTCTGTTAAAAATCATACTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATTGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGG..................................................................................................................TATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGTTTGTGTTTCTGGGGCAATCTTAATGGCCATCTTCCGTGGACCTGTGGTGTTTGGAGACAGAAGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCGTGGAATTGGGTTTTGATGATGGCCACCTCGGTGTTTTATGCTTAATANGAAACTGTATGTGCATGGCAGCATACTTAGCTATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAGTTTTGGC-AAATACCCTGCAAGTATATCAGTGACGGCATATTCATACCTTTTTGGNTGCCTTTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vwcK4n/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327317" ref_strand="+" ref_description="SGN-U327317        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: EMB3006 | expressed protein | chr4:10562034-10563768 REVERSE | Aliases: T5K18.130, T5K18_130, EMB3006, EMBRYO DEFECTIVE 3006(evalue: 1e-34, score=143) genbank/nr: gi|18415295|ref|NP_567582.1| expressed protein [Arabidopsis thaliana] gi|21593431|gb|AAM65398.1| unknown [Arabidopsis thaliana] gi|26450673|dbj|BAC42447.1| unknown protein [Arabidopsis thaliana] gi|28372912|gb|AAO39938.1| At4g19350 [Arabidopsis thaliana](evalue: 8e-33, score=143)">
      <seq>aatctttttcaaaaaataacctaattttttcaatctcccgccattgctgaagaaatggagaaaacgaaggaagaaattgcaggaacaaggcagacgaatttgaaaactgcatttgagcttggaattcactctttgttaacttcatgttctaaagagggattttgtaaagctttccctaattttgctccagcagaagttgaacgccttcatcggttgttcattcaggtgattacttctttgcatgaggatatagaggatgaatttgagtctttatgtgtggagacacaggcaggatcaactctcaacatggtggagcagcttgtggaagaacaaaacttggaccctttgtttccagagaaaagcaatgttgaagaagtcaggcacttcctatcagaagcaaaacagaatgagatcaactacttgacgactatgttggagacggcagaagaacagaaacgctccatcacttctcgtcttgaaaccctgaagaaacaaagacatgatttctctgatgctgctgctacagacattgtcaataagatacgaactgggaatcagaagtacaatacgaacaacaatattggcttccataattgatactggcctcgtctgatgcatcctatccgcccttagtcctgcgtctactcgagaagatggattaaactagagactatcagaacttccatttcaatgtgcctgtgaaatctaaagtaaattagttgcatttgctttcaatttcaagcaagtaaacaaggttgtttatttcttgttcacttaaaatgcttgtatatgacatttgtatgtcattaattaaagcactagaataagtgaaaggactactagtttcatctcttttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-h7FQ3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="128560" stop="123833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128260" g_stop="128105" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128104" i_stop="127994" i_length="111">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127993" g_stop="127925" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="225" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127924" i_stop="127624" i_length="301">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127623" g_stop="127594" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="255" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127593" i_stop="126541" i_length="1053">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126540" g_stop="126508" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="288" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126507" i_stop="125701" i_length="807">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125700" g_stop="125630" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="359" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125629" i_stop="124881" i_length="749">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124880" g_stop="124799" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="441" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124798" i_stop="124686" i_length="113">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124685" g_stop="124587" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="540" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="124586" i_stop="124454" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124453" g_stop="124132" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="862" r_length="322" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-U327317" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128260" e_stop="128105"/>
          <exon e_start="127993" e_stop="127925"/>
          <exon e_start="127623" e_stop="127594"/>
          <exon e_start="126540" e_stop="126508"/>
          <exon e_start="125700" e_stop="125630"/>
          <exon e_start="124880" e_stop="124799"/>
          <exon e_start="124685" e_stop="124587"/>
          <exon e_start="124453" e_stop="124132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAGGTACAATTTTTTTTAATTTTTTTTGAAAAATACAGATTTATAGATTGTATAAACCCTAAAAAGCAGCTCTTTGATTGCTTATCTTCCTTTTTTTTTCCGAATTAATTGAAGGGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAGGTTAGCCTTTTGTTTGTTTTTGAAAAAATTCTAACGGATTTGAAATTTGAGAAATTCGGAGTATTTGATCGGGAACTGCGTTTAAAGAAATTGCAATTTTTTTTAAAAAAAAAACTCAAAGGATTTGGGAATTAGGTTTGGAGAAATTGCGATTTTTTAGTTTTCTAAGGGGTTTAGGATTTGAGAAATTGGAATGTTTAATTGGAAATTAGAGCTTGGAGAAATTGTGATTTGTTTTATTTTTAAGCTTAGTTCTAGATATGTAGCATTTTAACTAGTTTAAAATTTATATTTTTTCCAGGTGATTACTTCTTTGCATGAGGATATAGAGGTATGCTGTTAGTACAATTTTAATGTTCTTTTCGTTCTAGATGAAATTTAATGTATGGAAGTATGGTATTGTTATTTCAGAGAGTGAAGGTTTTAGTAAAAAAAAAGTTCTTTTCTTTACAAGAACGTCGTTTTTTTGTGATTAATGTTGAGCTTGTTTAATCGGTGGTTTCAGTGCATATTCCCAAACTCAAGCATCTTTGCTTTTATTCTCCTTATTTAGTAGCATTAGTTAGTATTTGTGTAGTATCCTATTCTTCAATTTTACTACTGTGTGTTGCTTCTTTTGCTTTGTCCATCTTGTTGTTTTGTTGCTATTATTTTCTTTTCAGTCTTGCTTTGATTTCACTTCTTTTGAGCTGAGGGTCTATCAGAGACAACCTTTCTACCTTACAATGGTATGGGTAATGTCCGTGTACATCATACCCTCCCAAGAGGCCACTTGTGAGATTACGTTGGGTAAGTTGTTGTTGTTGCAAATGTGATGTCTGTCCGATATCAGGTGTTTCTATTTCATGAGAAGCCCAACTGCTGGTCAGATTTTACTCCTGAATAAACAGTGGACTGTGATTGATGCTTCTGGTCGGACTCAATATCAGTTAGAACTTAGAAGTTACACAAATAACCAAGGCCATATCCTTCTTACTCTTTCTTTCTTTCTTTCTTTTTGTTTCATGTGCTATCCCCTCTCCATTAAGAGTAATTAGAAGAATTATACTTTACTTCATTTCTTGTATTCTGGTTGGAACTTCTAATTTAAGTCTTCATTTCTTCACAACATGGCTAAGAGGTCATCTGGATAATAGTTCTCGTTTCTGGAAAGATAATACATCTAGAGTGTCACCCAATTAATTTTATTTGTTGACCTGAATATAACTTTATTTTTGCTATGGCTATGGTGATATTTAAATGTATTATTCCATGCTTGCTAGTGAACTTATAGAATTTTAATGAGTTTCTCATTTCAAATTGATCAGATATATTAGTTGTTAGATTTTATTATTCTCTCCTTTTAGGGCATTATTAAAAGTGTTGTCTATTTCAAATGTTGCAGGATGAATTTGAGTCTTTATGTGTGGAGACACAGGTACATATCATATGCTTCTTAGTTTATTGAAGTTATTATAAGAAAAGATGCACTCCTGTTAGATTTTCGTCACATCCATATTTTTAAGGTCAGTAGAACAACCAAGATTTGCAAAAGTTGCACCTTTGGTCTATGAGAACTGCCAAGTGCTTACTGGTCTTCAGTTGAACGCTGCACTAAAATTTTCAGCATGTGGACGTTTTGACCAAGATATAAGTTGTTATTGCACTTGCTCTTCTTCTGGACCAACTCTGAAGAGAGTAAAGCATTGCTGAGGATCCTATGTTGTGGATAAGAGAAGCTCTTGCAAAATATTGAGAATTTCAGATAAATCTTTGTTTTCATATGGATTAAGTGTAGGCTAACCTCCAGATTAGAAGTTCATTTACTGTGATTACTTAGAACAAAAGTTCCATGCATTGGAAACTGTTTGGAGGGGTCTGGCTTGAAAACCTACTTTTTATTGGAGAAGAGATTCATAAGAGAGAAGGTAATAATTAAGCTATATGAGAAATTTTAAGGATGGACCAAAAATATCCATTTAAATTGTTTGGTTCCGATCTGTGTTTGTTTTATTATGTTCTTATAAGAGCACACACAAATCAATGTTATAGAAAGAGATGCCAACAAGTTAATTATGTTCACACTTCTGCTGCTGTGAGACTGATTAATTTTATTTGGAAAAAGTGCATCTGTTAATACCATTTCTTTTGATATGAAACTGGAAAACTTATGTGAGTTCTGGTTGTTAAGTTGAAATAGTGTCTTTGATATGGTTTTCCTTGGGATCATATTTTTTACTTGTAGGCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAAGTATGCTTACTCCAGTCAGATAAATTGCATAGCCAGGATTAAAATGGTTTTCTTTACCACTCAATTGTTTTGGCAAAAGCTTTCTGGAATTCCATTATTTTCTGCCTTGGTCGCATTGCGTGTAGGAAATTTATTTTTATCAAGACTTCTATTTTGTCAAGTAACCACCACCATCATCCTGGTGAATCAGTTTAACTGAAAGAATGTCGATGGTTATCAAGGCTTCTATTTTGTTAAGTATTAATAGGTTCTCTTTAGGTCTTATGTCTTCCATGCTTGTAGAAAACATAGAGAAGTATCTAGTCCTTCCTATTTTTATTTTGTATCGCATTTGTCAGAATGAGCTTAACTGGAGCGCCATGGTTAGTGAGGATTCATATAGCTTGAGCCCAATTTGCATGCTTGTAGAAAATATAGATAAGTATCTAGTACTTCCTATTTTTATTTTGTATAGCATTTGTCCTAAATGAGCTTAATTGGAGCGCCATGGTTAGTAAGGATTCATATAGCTTGAATCCAATTTGTTTAGGATTTGAGGTTCAGTGTACATAGAAATGTCACTGCCTAGTCTATGAGAAGTACTTTGGCAGGATATTATTTTAATCTGAACATATATCCTTCTATTCAAGGATGAGGTATTTCATAACCTCGAAGCTCGATAGAAATTTTCATGATAGAGAAAGCTACAAATTCATGGTTTAAGACTTCCTGATCTTGTTTCTATTAAGTAATATCCAGTAAATTTGCAGAAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACGGTAATCTCTTGTTATTTCGTGCAATCCTTTCATAAACGAAGAGCTTATACATTAAGAGACATGCATATAATTTCTTAGACTGATTGGTTGACATCCTAAAAACGATTTGTTAGGCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAGGTACTACTACAAAGCTTCTTACTAACTATTTCATTCGTGTAATCGTAACACAAATCTCTCAGCTTAAAGTAATCTCTTCGTCTTTCTCCGTGGATCCCTGCTGAAAACAGTTGTTTACCTGCAATTTCTTCAGATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACTCGAGAAGATGGATTAAACTAGAGACTATCAGAACTTCCATTTCAATGTGCCTGTGAAATCTAAAGTAAATTAGTTGCATTTGCTTTCAATTTCAAGCAAGTAAACAAGGTTGTTTATTTCTTGTTCACTTAAAATGCTTGTATATGACATTTGTATGTCATTAATTAAAGCACTAGAATAAGTGAAAGGACTACTAGTTTCATCTCTTTTATACAT</genome_strand>
        <mrna_strand>AATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAG...............................................................................................................GGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAG.............................................................................................................................................................................................................................................................................................................GTGATTACTTCTTTGCATGAGGATATAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATTTGAGTCTTTATGTGTGGAGACACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACG.................................................................................................................GCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAG.....................................................................................................................................ATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACTCGAGAAGATGGATTAAACTAGAGACTATCAGAACTTCCATTTCAATGTGCCTGTGAAATCTAAAGTAAATTAGTTGCATTTGCTTTCAATTTCAAGCAAGTAAACAAGGTTGTTTATTTCTTGTTCACTTAAAATGCTTGTATATGACATTTGTATGTCATTAATTAAAGCACTAGAATAAGTGAAAGGACTACTAGTTTCATCTCTTTTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>25</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6663" PGL_stop="7242"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6663" e_stop="7242"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6663" e_stop="7242" e_length="580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6663" stop="7242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327862" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATG</gDNA_template>
            <first_frame> K  N  G  *  Q  S  S  P  F  S  *  A  K  W  Q  R  C  Q  Y  Y  R  C  R  C  G  G  R  Q  S  Q  S  R  R  E  A  A  A  I  S  S  S  G  G  E  E  P  N  V  Q  P  E  S  H  P  L  P  T  N  S  N  C  L  P  P  T  Q  S  P  P  L  H  L  P  P  V  L  L  L  L  L  F  L  V  T  P  L  H  L  H  R  P  P  P  R  H  N  R  R  R  R  F  L  L  P  I  P  S  K  T  S  G  I  L  R  F  L  T  Q  N  H  P  I  Q  T  H  H  Y  L  R  R  H  Y  T  P  H  R  *  A  Q  S  H  T  L  H  *  K  P  *  Q  K  A  D  L  Q  L  R  S  N  F  L  N  C  K  L  E  F  S  S  T  S  *  W  I  V  H  R  I  Q  Q  R  S  *  *  H  H  N  H  S  L  N  S  I  N  </first_frame>
            <second_frame>  K  M  A  D  R  V  H  P  S  A  K  P  N  G  N  A  A  N  I  T  G  A  A  A  A  A  V  N  P  K  A  A  A  K  P  P  Q  F  P  P  P  A  A  K  N  Q  M  Y  N  P  N  R  I  P  Y  R  P  T  P  T  A  Y  H  R  H  N  R  R  R  C  T  C  R  R  C  F  C  F  C  C  F  W  S  L  L  F  I  C  T  V  L  L  L  A  T  I  A  G  A  G  F  Y  F  L  F  R  P  K  P  P  A  F  S  V  S  S  L  K  I  I  Q  F  K  L  T  T  T  S  D  D  T  T  H  L  T  V  K  L  N  L  T  L  S  T  K  N  P  N  K  K  L  I  Y  S  Y  D  P  I  S  L  T  V  N  S  N  S  V  L  L  A  N  G  S  F  T  G  F  N  S  G  P  N  N  I  T  I  I  H  S  T  L  S  M </second_frame>
            <third_frame>   K  W  L  T  E  F  T  L  Q  L  S  Q  M  A  T  L  P  I  L  P  V  P  L  R  R  P  S  I  P  K  P  P  R  S  R  R  N  F  L  L  R  R  R  R  T  K  C  T  T  R  I  A  S  L  T  D  Q  L  Q  L  P  T  T  D  T  I  A  A  V  A  P  A  A  G  A  S  A  S  V  V  S  G  H  S  S  S  S  A  P  S  S  S  S  P  Q  S  P  A  P  V  S  T  S  Y  S  V  Q  N  L  R  H  S  P  F  P  H  S  K  S  S  N  S  N  S  P  L  P  P  T  T  L  H  T  S  P  L  S  S  I  S  H  S  P  L  K  T  L  T  K  S  *  F  T  V  T  I  Q  F  P  *  L  *  T  R  I  Q  F  Y  *  L  M  D  R  S  Q  D  S  T  A  V  L  I  T  S  Q  S  F  T  Q  L  Y  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6664" stop="7242"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMADRVHPSAKPNGNAANITGAAAAAVNPKAAAKPPQFPPPAAKNQMYNPNRIPYRPTPTAYHRHNRRRCTCRRCFCFCCFWSLLFICTVLLLATIAGAGFYFLFRPKPPAFSVSSLKIIQFKLTTTSDDTTHLTVKLNLTLSTKNPNKKLIYSYDPISLTVNSNSVLLANGSFTGFNSGPNNITIIHSTLSM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="13319" PGL_stop="7260"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13319" e_stop="13168"/>
            <exon e_start="11854" e_stop="11786"/>
            <exon e_start="11660" e_stop="11554"/>
            <exon e_start="11465" e_stop="11035"/>
            <exon e_start="10353" e_stop="9430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.796"/>
          <exon-intron don_prob="0.994" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.339" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.589" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.796">
            <gDNA_exon_boundary e_start="13319" e_stop="13168" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11854" e_stop="11786" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.845">
            <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11660" e_stop="11554" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.339">
            <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11465" e_stop="11035" e_length="431"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.589">
            <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681"/>
          </intron>
          <exon e_serial="5" e_score="0.999">
            <gDNA_exon_boundary e_start="10353" e_stop="9430" e_length="924"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13319" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="9430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTTTCACACAATATTGTCTTCCTAAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTACAACCCCAATTCTAAAAAACCCCCTTTTTCCCAAATTTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAG : TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT : ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG : GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAG</gDNA_template>
            <first_frame> S  L  S  H  N  I  V  F  L  N  S  R  R  K  S  Q  E  F  F  E  K  K  F  R  L  Y  N  P  N  S  K  K  P  P  F  S  Q  I  S  N  L  S  L  K  I  F  L  L  T  S  S :   M  A  G  S  A  P  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  D  F  F  T  S  Y  D  E  V  Y  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  V  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  G  F  G  S  V  R  G  N  C  S  F  P  T  S  S  S  L  I  Y  L  F  R  V  N  N  C  K  F  C  L  V  F  V  L  F  C  F  W  K  C  P  N  N  F  G  F  G  G  C  F  E  L  F  I  *  T  I  F  L  *  M  L  G  F  *  L  M  F  S  N  V  *  C  Y  I  Y  V  P  L  F  L  A  Q  S  I  K  D  S  C  *  V  R  S  F  K </first_frame>
            <second_frame>  L  F  H  T  I  L  S  S  *  I  P  G  V  N  P  K  N  F  L  K  K  S  S  V  F  T  T  P  I  L  K  N  P  L  F  P  K  F  Q  I  F  L  *  K  S  S  C  *  H  Q   : V  W  Q  A  R  H  Q  R  V  L  S  L  M  L  V  N  S  M  R  K  *  R  S   : Y  L  V  L  N  N  K  I  F  S  H  H  M  M  R  F  M  T  A  L  M  P  W  V  C  K  K  T  F  *  E  A  S  M  P  M  :  V  L  R  S  H  Q  L  F  S  K  G  A  S  F  P  F  A  R  A  L  M  L  S  S  R  H  N  R  E  L  E  R  R  Q  L  S  A  L  E  F  S  S  N  L  I  T  V  *  L  N  V  R  L  L  F  L  H  Q  P  V  S  W  H  N  R  L  R  R  L  C  V  R  S  E  T  I  W  A  *  R  F  M  R  V  L  G  V  P  V  S  V  R  I  S  V  S  F  R  V  V  F  M  W  *  L  V  L  Q  A  V  S  L  T  C  C  A  D  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  M  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S  T  P  G  E  R  L  I  G  S  L  T  K  C  V  V  V  I  T  Q  Y  L  Q  L  T  E  T  W  I  R  T  L  G  I  S  L  *  G  S  S  D  L  A  H  L  V  C  L  S  P  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  L  P  R  M  M  K  G  C  F  L  T  F  K  S  F  T  T  S  *  S  R  S  S  Q  P  M  L  L  I  S  F  E  V  V  L  A  L  *  G  G  I  V  P  S  L  Q  V  V  V  *  Y  I  Y  S  E  *  T  T  A  N  F  V  W  F  L  C  Y  F  V  F  G  S  V  Q  I  T  L  D  L  V  V  V  L  N  C  L  F  E  L  F  F  Y  E  C  *  A  F  S  *  C  F  L  M  F  D  A  I  F  M  S  H  C  F  L  L  N  Q  S  K  I  H  V  R  L  G  P  S   </second_frame>
            <third_frame>   S  F  T  Q  Y  C  L  P  K  F  P  A  *  I  P  R  I  F  *  K  K  V  P  S  L  Q  P  Q  F  *  K  T  P  F  F  P  N  F  K  S  F  F  K  N  L  L  V  N  I  K  :  Y  G  R  L  G  T  R  G  F  S  V  *  C  S  S  I  R  C  E  N  D  G  A  :  T  W  Y  *  T  T  R  F  F  H  I  I  *  *  G  L  *  Q  L  *  C  H  G  F  A  R  K  P  S  E  R  H  L  C  L  W :   F  *  E  A  I  S  Y  S  A  K  G  H  R  S  L  L  Q  G  P  *  C  Y  P  A  G  T  I  G  N  W  K  D  G  N  F  L  L  W  S  S  P  A  T  *  L  Q  F  S  *  M  S  G  S  C  S  C  T  N  P  *  A  G  T  T  D  *  E  G  Y  A  C  A  R  R  L  S  G  R  E  G  S  C  V  C  W  G  Y  Q  C  P  *  G  S  A  Y  P  S  E  W  C  S  C  G  S  W  Y  S  R  P  C  L  *  H  V  A  Q  T  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  *  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  H  Q  A  K  G  *  L  A  H  *  Q  N  A  W  S  *  S  H  S  I  C  N  S  R  R  H  G  S  E  H  *  G  Y  H  Y  E  G  V  P  I  W  L  I  S  C  A  Y  H  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  Y  Q  G  *  *  K  D  A  F  *  H  S  K  V  L  Q  R  R  N  R  G  A  P  S  Q  C  C  *  S  P  L  R  W  F  W  L  C  E  G  E  L  F  L  P  Y  K  *  *  S  N  I  F  I  Q  S  E  Q  L  Q  I  L  S  G  F  C  V  I  L  F  L  E  V  S  K  *  L  W  I  W  W  L  F  *  I  V  Y  L  N  Y  F  S  M  N  V  R  L  L  V  N  V  F  *  C  L  M  L  Y  L  C  P  T  V  S  C  S  I  N  Q  R  F  M  L  G  *  V  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13319" stop="13168"/>
                    <exon start="11854" stop="11786"/>
                    <exon start="11660" stop="11554"/>
                    <exon start="11465" stop="11035"/>
                    <exon start="10353" stop="9718"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSHNIVFLNSRRKSQEFFEKKFRLYNPNSKKPPFSQISNLSLKIFLLTSSMAGSAPEGSQFDARQFDAKMTELLGTEQQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9583" e_stop="9515"/>
            <exon e_start="8052" e_stop="7260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.536"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.536">
            <gDNA_exon_boundary e_start="9583" e_stop="9515" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9514" i_stop="8053" i_length="1462"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="8052" e_stop="7260" e_length="793"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9583" stop="9515"/>
              <exon start="8052" stop="7260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329444" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAAT : ATTTATTAAGAATAATATATCAAACTCTTTTTTTTTTTTTTTGCTTTTTGGTATATTATAATTATATCAAACACTATATTTCACCAAAAAAAATCTACATAAAACCATTTTCCCCCTCAATTTGCCTCATCTCTACTAAATAAATAGTATAGTATAATATTATTATGAATAAATTGCAAAAATCAAGCAAATAATTGATAAATAAAAATAAAAACAACGAAAAATAAGTTAAAGAGTAAAAAAAAAAAAACTACATTTAACTATCTCGATTTTTTGAATTTTCTATCCAAATTATCACGTGTTTGCTTTTTCTATCCGAATTATAACCAATTATTTATCAAAACATACGTAAGCTATAGCCATTCACGTTTTCTACCTGAATTATTACCGTATTAAGGTAGAAAAAAGTGAAAACGTATGGTTAACGTGTGATTCGATAAATATTTGATCATACTTCAAATAAAAAAGGACCTCCACACCGATAAATAATTCATCGAGATAATTTAGATGTGTTTTTCGCCCTTCGCTCGTCCCGAAAAAATGAATTTAGAAGGTCCATTTTAAGATCTTCATACGTAAATCAGCCTTACATTTAGCATTTGTAGTTGAAGCCACCGCCGGAGTTTTCCCCGTCGGAATTCTTCCATGGATTCCGTCACAAGTAACTCTGATCCCGACTTCCTTACTTTTCAATTTATCCATTTTCGCTAGCACCATTGTATCCAACAAGATCTTCATCGGTAATCCATTTTTTCTTTTCAGATCTGATTTCAACGATGAAATTGAATCCGCA</gDNA_template>
            <first_frame> W  I  W  W  L  F  *  I  V  Y  L  N  Y  F  S  M  N  V  R  L  L  V  N  :  I  Y  *  E  *  Y  I  K  L  F  F  F  F  F  A  F  W  Y  I  I  I  I  S  N  T  I  F  H  Q  K  K  S  T  *  N  H  F  P  P  Q  F  A  S  S  L  L  N  K  *  Y  S  I  I  L  L  *  I  N  C  K  N  Q  A  N  N  *  *  I  K  I  K  T  T  K  N  K  L  K  S  K  K  K  K  T  T  F  N  Y  L  D  F  L  N  F  L  S  K  L  S  R  V  C  F  F  Y  P  N  Y  N  Q  L  F  I  K  T  Y  V  S  Y  S  H  S  R  F  L  P  E  L  L  P  Y  *  G  R  K  K  *  K  R  M  V  N  V  *  F  D  K  Y  L  I  I  L  Q  I  K  K  D  L  H  T  D  K  *  F  I  E  I  I  *  M  C  F  S  P  F  A  R  P  E  K  M  N  L  E  G  P  F  *  D  L  H  T  *  I  S  L  T  F  S  I  C  S  *  S  H  R  R  S  F  P  R  R  N  S  S  M  D  S  V  T  S  N  S  D  P  D  F  L  T  F  Q  F  I  H  F  R  *  H  H  C  I  Q  Q  D  L  H  R  *  S  I  F  S  F  Q  I  *  F  Q  R  *  N  *  I  R  </first_frame>
            <second_frame>  G  F  G  G  C  F  E  L  F  I  *  T  I  F  L  *  M  L  G  F  *  L  I :   F  I  K  N  N  I  S  N  S  F  F  F  F  L  L  F  G  I  L  *  L  Y  Q  T  L  Y  F  T  K  K  N  L  H  K  T  I  F  P  L  N  L  P  H  L  Y  *  I  N  S  I  V  *  Y  Y  Y  E  *  I  A  K  I  K  Q  I  I  D  K  *  K  *  K  Q  R  K  I  S  *  R  V  K  K  K  K  L  H  L  T  I  S  I  F  *  I  F  Y  P  N  Y  H  V  F  A  F  S  I  R  I  I  T  N  Y  L  S  K  H  T  *  A  I  A  I  H  V  F  Y  L  N  Y  Y  R  I  K  V  E  K  S  E  N  V  W  L  T  C  D  S  I  N  I  *  S  Y  F  K  *  K  R  T  S  T  P  I  N  N  S  S  R  *  F  R  C  V  F  R  P  S  L  V  P  K  K  *  I  *  K  V  H  F  K  I  F  I  R  K  S  A  L  H  L  A  F  V  V  E  A  T  A  G  V  F  P  V  G  I  L  P  W  I  P  S  Q  V  T  L  I  P  T  S  L  L  F  N  L  S  I  F  A  S  T  I  V  S  N  K  I  F  I  G  N  P  F  F  L  F  R  S  D  F  N  D  E  I  E  S  A </second_frame>
            <third_frame>   D  L  V  V  V  L  N  C  L  F  E  L  F  F  Y  E  C  *  A  F  S  *   : Y  L  L  R  I  I  Y  Q  T  L  F  F  F  F  C  F  L  V  Y  Y  N  Y  I  K  H  Y  I  S  P  K  K  I  Y  I  K  P  F  S  P  S  I  C  L  I  S  T  K  *  I  V  *  Y  N  I  I  M  N  K  L  Q  K  S  S  K  *  L  I  N  K  N  K  N  N  E  K  *  V  K  E  *  K  K  K  N  Y  I  *  L  S  R  F  F  E  F  S  I  Q  I  I  T  C  L  L  F  L  S  E  L  *  P  I  I  Y  Q  N  I  R  K  L  *  P  F  T  F  S  T  *  I  I  T  V  L  R  *  K  K  V  K  T  Y  G  *  R  V  I  R  *  I  F  D  H  T  S  N  K  K  G  P  P  H  R  *  I  I  H  R  D  N  L  D  V  F  F  A  L  R  S  S  R  K  N  E  F  R  R  S  I  L  R  S  S  Y  V  N  Q  P  Y  I  *  H  L  *  L  K  P  P  P  E  F  S  P  S  E  F  F  H  G  F  R  H  K  *  L  *  S  R  L  P  Y  F  S  I  Y  P  F  S  L  A  P  L  Y  P  T  R  S  S  S  V  I  H  F  F  F  S  D  L  I  S  T  M  K  L  N  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7502" stop="7260"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVHFKIFIRKSALHLAFVVEATAGVFPVGILPWIPSQVTLIPTSLLFNLSIFASTIVSNKIFIGNPFFLFRSDFNDEIESA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7851" stop="7657"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKIKTTKNKLKSKKKKTTFNYLDFLNFLSKLSRVCFFYPNYNQLFIKTYVSYSHSRFLPELLPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="19430" PGL_stop="15005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19430" e_stop="19335"/>
            <exon e_start="17904" e_stop="17844"/>
            <exon e_start="17667" e_stop="17561"/>
            <exon e_start="17472" e_stop="17042"/>
            <exon e_start="15897" e_stop="15005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.396" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.719" acc_prob="0.033" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.807" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19430" e_stop="19335" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.396">
            <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17904" e_stop="17844" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17667" e_stop="17561" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.719" acc_prob="0.033">
            <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17472" e_stop="17042" e_length="431"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.807">
            <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15897" e_stop="15005" e_length="893"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19430" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15691" stop="15005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312489" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA : TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT : GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG : GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGATT</gDNA_template>
            <first_frame> V  D  P  R  S  F  C  K  T  A  V  F  E  N  P  N  S  Q  I  F  Q  I  F  L  *  Q  T  S  N  H  H  Q  :  S  W  Q  Q  K  V  L  S  L  M  L  V  N  S  M  Q  K  *  Q  N   : C  L  V  L  N  N  R  N  S  S  H  H  M  M  R  F  T  T  V  L  M  P  W  V  C  K  K  I  S  *  G  A  S  M  P  M  :  V  L  R  S  H  L  L  F  S  K  G  A  L  F  L  F  A  R  A  L  M  S  S  S  R  H  N  L  V  L  E  R  R  Q  L  S  A  L  E  F  S  S  S  L  I  T  V  *  L  S  V  R  L  W  F  L  H  Q  P  V  S  L  H  N  R  L  R  R  L  *  E  H  L  V  T  T  W  V  *  R  F  M  L  V  L  G  V  P  V  S  V  R  I  S  A  S  F  R  A  V  F  M  L  W  L  V  L  Q  A  V  S  L  T  C  C  A  G  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  T  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  K  S  K  W  V  F  S  L  R  L  C  H  Q  R  L  L  R  L  L  E  S  S  *  T  S  L  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  S  F  M  S  M  S  I  R  K  S  G  S  L  K  H  Y  V  I  F  T  R  P  W  P  S  P  R  A  S  S  L  L  T  L  G  E  R  L  T  G  S  L  I  K  C  V  D  V  T  T  Q  Y  L  Q  L  M  E  T  W  I  R  T  Q  E  I  S  S  *  G  S  S  D  L  A  H  L  V  C  L  S  Q  P  I  S  L  L  V  V  L  M  S  N  K  S  P  L  L  L  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  S  P  R  M  M  K  G  C  F  L  T  Y  R  S  F  T  T  S  *  L  R  S  S  Q  P  M  L  L  I  S  S  K  A  I  F  G  I  F  I  L  R  F  S  I  S  L  Y  *  T  W  N  *  E  M  L  V  A  M  V  C  H  S  T  S  S  F  P  D  S  N  E  T  F  F  F  F  L  Q  I  L  F  G  L  S  F  Y  T  F  K  V  S  K  *  L  C  I  W  C  C  L  N  C  L  I  D  L  F  P  Y  G  R  *  S  F  *  L  D  </first_frame>
            <second_frame>  *  I  R  G  V  F  V  K  L  Q  S  L  K  T  L  I  L  K  S  F  R  S  F  F  D  K  L  Q  I  T  I  N :   H  G  S  R  R  F  S  V  *  C  S  S  I  R  C  K  N  D  R  T  :  A  W  Y  *  T  T  G  I  L  H  I  I  *  *  G  S  R  Q  F  *  C  H  G  F  A  R  K  S  P  E  G  H  L  C  L  W :   F  *  E  A  I  C  Y  S  A  K  G  H  C  S  F  L  Q  G  P  *  C  H  P  A  G  T  I  W  Y  W  K  D  G  N  F  L  L  W  N  S  P  A  A  *  L  Q  F  S  *  V  S  G  S  G  S  C  T  N  P  *  A  C  T  T  D  *  E  G  Y  E  S  T  W  *  L  P  G  C  E  G  S  C  L  C  W  G  Y  Q  C  P  *  G  S  A  H  P  S  E  R  C  S  C  C  G  W  Y  S  R  P  C  L  *  H  V  A  Q  A  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  R  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  N  P  S  G  C  F  L  C  D  Y  A  T  R  G  S  *  D  Y  *  K  V  H  E  Q  A  C  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  V  L  C  Q  C  R  *  G  R  V  E  A  *  N  T  M  *  S  L  R  D  L  G  H  H  P  E  R  H  L  C  *  H  *  A  K  G  *  L  A  H  *  *  N  A  W  T  *  P  H  S  I  C  N  S  W  R  H  G  S  E  H  K  R  Y  H  H  E  G  V  P  I  W  L  I  S  C  A  Y  H  N  R  S  P  C  S  W  Y  *  C  P  T  S  L  P  C  Y  *  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  H  Q  G  *  *  K  D  A  F  *  H  T  E  V  L  Q  R  R  N  *  G  A  P  S  Q  C  C  *  S  P  L  R  R  F  L  V  Y  L  F  L  D  L  V  S  V  C  T  R  L  G  I  R  K  C  W  *  P  W  F  A  T  A  P  V  P  F  L  I  Q  M  K  P  F  F  F  F  C  K  F  C  L  V  C  H  F  I  P  L  K  Y  P  N  N  F  V  F  G  V  V  *  I  V  *  L  I  Y  F  P  M  E  G  K  A  F  S  W  I </second_frame>
            <third_frame>   R  S  E  E  F  L  *  N  C  S  L  *  K  P  *  F  S  N  L  S  D  L  S  L  T  N  F  K  S  P  S   : I  M  A  A  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  E  F  F  T  S  Y  D  E  V  H  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  I  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  D  F  W  Y  I  Y  S  *  I  *  Y  Q  F  V  L  D  L  E  L  G  N  A  G  S  H  G  L  P  Q  H  Q  F  L  S  *  F  K  *  N  L  F  F  F  F  A  N  F  V  W  F  V  I  L  Y  L  *  S  I  Q  I  T  L  Y  L  V  L  F  E  L  F  N  *  S  I  S  L  W  K  V  K  L  L  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19383" stop="19335"/>
                    <exon start="17904" stop="17844"/>
                    <exon start="17667" stop="17561"/>
                    <exon start="17472" stop="17042"/>
                    <exon start="15897" stop="15262"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1281</number_coding_nucleotides>
                  <number_encoded_amino_acids>427</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSNLSDLSLTNFKSPSIMAAEGSQFDARQFDAKMTELLGTEQQEFFTSYDEVHDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="24476" PGL_stop="23119"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24476" e_stop="24446"/>
            <exon e_start="23973" e_stop="23545"/>
            <exon e_start="23138" e_stop="23119"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.229" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24476" e_stop="24446" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.229" acc_prob="0.820">
            <gDNA_intron_boundary i_start="24445" i_stop="23974" i_length="472"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23973" e_stop="23545" e_length="429"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23544" i_stop="23139" i_length="406"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23138" e_stop="23119" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24476" stop="24446"/>
              <exon start="23973" stop="23545"/>
              <exon start="23138" stop="23119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344044" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCAAAGAAGCGGTCGTGGCCAACCAAGCG : GCTGATGAGCTTAATAAATGGAAAATTGAAGAAGCTCGCAAGTTCGAACAAGCGCGTTTTGCTGAAGAGGCGGCTCTTGCAATTGCTGAGACCGAAAAGGCGAAATGCAGAGCTGCTATCGAAGCTGCTAAGAAAGCACAAAAGATGGCTGAAATAGAAGCGCAAAGAAGGAAGTATGCAGAGTTGAAAGCTAAGCGAGAGGCAGAAAAAAAGAAACAAGCAATTAATGTTCGATCTCAGAATGATATACGTTATAGGAAGTATACAATAGAAGAGATTGAGGCAGCCACCAAAAAGTTCTCAAATGCACAAAAAATTGGAGAAGGTGGATATGGACCTGTTTTTAAGGGTAAACTAGATCACACACCTGTTGCCATTAAAGTTCTGAGTCCTGATGCTGCACAAGGGAAGAAACAGTTCCAACAAGAG : GTTGAGGTCCTCAGTCTCAT</gDNA_template>
            <first_frame> L  Q  R  S  G  R  G  Q  P  S   : G  *  *  A  *  *  M  E  N  *  R  S  S  Q  V  R  T  S  A  F  C  *  R  G  G  S  C  N  C  *  D  R  K  G  E  M  Q  S  C  Y  R  S  C  *  E  S  T  K  D  G  *  N  R  S  A  K  K  E  V  C  R  V  E  S  *  A  R  G  R  K  K  E  T  S  N  *  C  S  I  S  E  *  Y  T  L  *  E  V  Y  N  R  R  D  *  G  S  H  Q  K  V  L  K  C  T  K  N  W  R  R  W  I  W  T  C  F  *  G  *  T  R  S  H  T  C  C  H  *  S  S  E  S  *  C  C  T  R  E  E  T  V  P  T  R   : G  *  G  P  Q  S  H </first_frame>
            <second_frame>  C  K  E  A  V  V  A  N  Q  A  :  A  D  E  L  N  K  W  K  I  E  E  A  R  K  F  E  Q  A  R  F  A  E  E  A  A  L  A  I  A  E  T  E  K  A  K  C  R  A  A  I  E  A  A  K  K  A  Q  K  M  A  E  I  E  A  Q  R  R  K  Y  A  E  L  K  A  K  R  E  A  E  K  K  K  Q  A  I  N  V  R  S  Q  N  D  I  R  Y  R  K  Y  T  I  E  E  I  E  A  A  T  K  K  F  S  N  A  Q  K  I  G  E  G  G  Y  G  P  V  F  K  G  K  L  D  H  T  P  V  A  I  K  V  L  S  P  D  A  A  Q  G  K  K  Q  F  Q  Q  E  :  V  E  V  L  S  L   </second_frame>
            <third_frame>   A  K  K  R  S  W  P  T  K  R :   L  M  S  L  I  N  G  K  L  K  K  L  A  S  S  N  K  R  V  L  L  K  R  R  L  L  Q  L  L  R  P  K  R  R  N  A  E  L  L  S  K  L  L  R  K  H  K  R  W  L  K  *  K  R  K  E  G  S  M  Q  S  *  K  L  S  E  R  Q  K  K  R  N  K  Q  L  M  F  D  L  R  M  I  Y  V  I  G  S  I  Q  *  K  R  L  R  Q  P  P  K  S  S  Q  M  H  K  K  L  E  K  V  D  M  D  L  F  L  R  V  N  *  I  T  H  L  L  P  L  K  F  *  V  L  M  L  H  K  G  R  N  S  S  N  K  R :   L  R  S  S  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24475" stop="24446"/>
                    <exon start="23973" stop="23545"/>
                    <exon start="23138" stop="23121"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKEAVVANQAADELNKWKIEEARKFEQARFAEEAALAIAETEKAKCRAAIEAAKKAQKMAEIEAQRRKYAELKAKREAEKKKQAINVRSQNDIRYRKYTIEEIEAATKKFSNAQKIGEGGYGPVFKGKLDHTPVAIKVLSPDAAQGKKQFQQEVEVLSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28014" PGL_stop="25624"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28014" e_stop="27737"/>
            <exon e_start="26560" e_stop="26475"/>
            <exon e_start="26024" e_stop="25903"/>
            <exon e_start="25824" e_stop="25624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28014" e_stop="27737" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.959">
            <gDNA_intron_boundary i_start="27736" i_stop="26561" i_length="1176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26560" e_stop="26475" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26474" i_stop="26025" i_length="450"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26024" e_stop="25903" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="25902" i_stop="25825" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25824" e_stop="25624" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28014" stop="27737"/>
              <exon start="26560" stop="26475"/>
              <exon start="26024" stop="25903"/>
              <exon start="25824" stop="25624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322824" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAACGTGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGC : CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG : ATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAG : GAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATCAGAAGATTCAAT</gDNA_template>
            <first_frame> S  N  V  K  E  K  L  R  I  F  F  S  A  T  V  M  V  A  E  R  G  G  A  K  *  R  Q  P  L  S  D  L  F  *  Y  I  N  I  *  T  K  N  G  F  P  K  S  W  R  R  S  Y  C  C  C  R  *  *  R  *  E  *  Q  L  C  G  E  M  G  Y  *  *  S  A  W  K  Q  S  N  P  C  I  D  S  C  S  G  Q  K  F  T  K  A :   Y  F  R  F  K  W  R  F  K  *  *  S  Y  S  K  C  L  H  T  F  Q  G  L  F  C  T  Q  K   : D  S  S  E  R  D  C  H  *  E  Y  *  S  I  E  G  T  S  *  V  H  Q  Q  *  Q  C  H  Q  H  C  S  W  C  I  V  *  E  C  S  W  Q  :  E  I  L  D  S  *  C  A  N  I  G  K  *  G  C  T  R  V  L  F  C  L  R  S  F  K  R  Q  A  T  I  C  P  T  S  S  K  I  S  S  F  L  C  T  S  K  T  T  I  F  V  S  M  V  S  T  *  V  K  *  L  W  I  R  R  F  N </first_frame>
            <second_frame>  Q  T  *  K  K  N  *  E  F  F  F  Q  P  P  L  W  W  R  K  G  A  E  Q  S  S  G  S  L  F  P  I  C  F  N  I  *  I  Y  E  Q  K  M  G  S  Q  N  P  G  E  D  P  I  V  V  A  V  D  K  D  K  N  S  S  S  A  V  K  W  A  I  D  N  L  L  G  N  N  Q  I  L  V  L  I  H  V  R  V  K  N  S  P  K   : P  T  L  D  S  N  G  G  L  S  D  E  A  T  Q  N  V  F  T  P  F  K  A  Y  S  A  R  K  R  :  I  V  V  K  E  I  V  I  E  N  T  E  A  S  K  G  L  L  E  Y  I  N  S  N  S  V  T  N  I  V  L  G  A  S  S  R  S  A  L  G  R :   K  Y  W  T  H  D  V  P  T  L  V  N  K  A  A  P  E  F  C  S  V  Y  V  V  S  K  G  K  Q  Q  S  V  R  P  A  A  K  S  L  P  S  C  V  P  A  R  Q  P  S  S  S  A  W  S  A  P  R  S  S  N  S  G  S  E  D  S   </second_frame>
            <third_frame>   K  R  E  R  K  T  K  N  F  F  F  S  H  R  Y  G  G  G  K  G  R  S  K  V  A  A  A  S  F  R  S  V  L  I  Y  K  Y  M  N  K  K  W  V  P  K  I  L  E  K  I  L  L  L  L  P  L  I  K  I  R  I  A  A  L  R  *  N  G  L  L  I  I  C  L  E  T  I  K  S  L  Y  *  F  M  F  G  S  K  I  H  Q  S  :  L  L  *  I  Q  M  E  V  *  V  M  K  L  L  K  M  S  S  H  L  S  R  L  I  L  H  A  K  G :   *  *  *  K  R  L  S  L  R  I  L  K  H  R  R  D  F  L  S  T  S  T  V  T  V  S  P  T  L  F  L  V  H  R  L  G  V  L  L  A   : G  N  I  G  L  M  M  C  Q  H  W  *  I  R  L  H  Q  S  F  V  L  S  T  *  F  Q  K  A  S  N  N  L  S  D  Q  Q  Q  N  L  F  L  L  V  Y  Q  Q  D  N  H  L  R  Q  H  G  Q  H  L  G  Q  V  T  L  D  Q  K  I  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27905" stop="27737"/>
                    <exon start="26560" stop="26475"/>
                    <exon start="26024" stop="25903"/>
                    <exon start="25824" stop="25626"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYEQKMGSQNPGEDPIVVAVDKDKNSSSAVKWAIDNLLGNNQILVLIHVRVKNSPKPTLDSNGGLSDEATQNVFTPFKAYSARKRIVVKEIVIENTEASKGLLEYINSNSVTNIVLGASSRSALGRKYWTHDVPTLVNKAAPEFCSVYVVSKGKQQSVRPAAKSLPSCVPARQPSSSAWSAPRSSNSGSEDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28001" e_stop="27733"/>
            <exon e_start="26560" e_stop="26475"/>
            <exon e_start="26034" e_stop="25950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.959" e_score="0.981"/>
          <exon-intron don_prob="0.976" acc_prob="0.740" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="28001" e_stop="27733" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.959">
            <gDNA_intron_boundary i_start="27732" i_stop="26561" i_length="1172"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="26560" e_stop="26475" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.740">
            <gDNA_intron_boundary i_start="26474" i_stop="26035" i_length="440"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26034" e_stop="25950" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28001" stop="27733"/>
              <exon start="26560" stop="26475"/>
              <exon start="26034" stop="25950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337697" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAG : CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG : GTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGT</gDNA_template>
            <first_frame> K  N  *  E  F  F  F  Q  P  P  L  W  W  R  K  G  A  E  Q  S  S  G  S  L  F  P  I  C  F  N  I  *  I  Y  E  Q  K  M  G  S  Q  N  P  G  E  D  P  I  V  V  A  V  D  K  D  K  N  S  S  S  A  V  K  W  A  I  D  N  L  L  G  N  N  Q  I  L  V  L  I  H  V  R  V  K  N  S  P  K  R  S :   Y  F  R  F  K  W  R  F  K  *  *  S  Y  S  K  C  L  H  T  F  Q  G  L  F  C  T  Q  K   : G  Y  C  R  *  *  *  K  R  L  S  L  R  I  L  K  H  R  R  D  F  L  S  T  S  T  V  T   </first_frame>
            <second_frame>  K  T  K  N  F  F  F  S  H  R  Y  G  G  G  K  G  R  S  K  V  A  A  A  S  F  R  S  V  L  I  Y  K  Y  M  N  K  K  W  V  P  K  I  L  E  K  I  L  L  L  L  P  L  I  K  I  R  I  A  A  L  R  *  N  G  L  L  I  I  C  L  E  T  I  K  S  L  Y  *  F  M  F  G  S  K  I  H  Q  S  V   : A  T  L  D  S  N  G  G  L  S  D  E  A  T  Q  N  V  F  T  P  F  K  A  Y  S  A  R  K  R  :  V  I  A  D  S  S  E  R  D  C  H  *  E  Y  *  S  I  E  G  T  S  *  V  H  Q  Q  *  Q  </second_frame>
            <third_frame>   K  L  R  I  F  F  S  A  T  V  M  V  A  E  R  G  G  A  K  *  R  Q  P  L  S  D  L  F  *  Y  I  N  I  *  T  K  N  G  F  P  K  S  W  R  R  S  Y  C  C  C  R  *  *  R  *  E  *  Q  L  C  G  E  M  G  Y  *  *  S  A  W  K  Q  S  N  P  C  I  D  S  C  S  G  Q  K  F  T  K  A  *  :  L  L  *  I  Q  M  E  V  *  V  M  K  L  L  K  M  S  S  H  L  S  R  L  I  L  H  A  K  G :   L  L  Q  I  V  V  K  E  I  V  I  E  N  T  E  A  S  K  G  L  L  E  Y  I  N  S  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27905" stop="27733"/>
                    <exon start="26560" stop="26530"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYEQKMGSQNPGEDPIVVAVDKDKNSSSAVKWAIDNLLGNNQILVLIHVRVKNSPKRSYFRFKWRFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="31639" PGL_stop="30849"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31639" e_stop="31008"/>
            <exon e_start="30912" e_stop="30849"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.799" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="31639" e_stop="31008" e_length="632"/>
          </exon>
          <intron i_serial="1" don_prob="0.799" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31007" i_stop="30913" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30912" e_stop="30849" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31639" stop="31008"/>
              <exon start="30912" stop="30849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACAGCATCATCTGTGCCTGAAGAGAGCAGAAGTGAAGGGACTATGTCGCTTGATGTGATATCTGAAAATGAAAGCAACTGGATTGCTGGTGATGCTGTTGTTAGGGAAAGTGAGGATGATGATTCCTTATCACTGGAGGGTGATCAAATTCTCGATAATTCGTGTTCCCTGTCAGTGGTGAGCGATTGTAGTAGTTTATGCGCTGATGATTTTATAGGCTTTGAGATAGCGTCTGACATAGAAGGTCAGGATTTCGTGGATTCTCAGAAAAGCATCAGCCATGATGAACTTATTGGTAAGACTGGGGTTTTGGTTGAGTCAGATGTTGAGGATACTTTGATTAGACCCGCGGCAGTTCCTGAGAGACTTGAGGAGCAGATCACTGATAAAGATTTGAATGCAACAGTCAGCCGCAGTGTTTTTGAAGTGGACTACATACCCTTATGGGGATATACATCTATCTGTGGAAGGAGACCAGAAATGGAAGACGCATTCGCAACTGTTCCTAGATTCATGAAAATTCCTCTACCGATGTTAATTGGTGATCGCGTGCTTGATGGACTGTCTAGACGCTTGAGTCATTTGACGACTCATTTCTTTGGAGTTTATGATGGCCATGGTGGTTCTCAG : GTGGCAAATTACTGCCGAGACCGGATTCATGCTGTATTGGCTGAGGAGTTGGAAACTTTTATGA</gDNA_template>
            <first_frame> L  Q  H  H  L  C  L  K  R  A  E  V  K  G  L  C  R  L  M  *  Y  L  K  M  K  A  T  G  L  L  V  M  L  L  L  G  K  V  R  M  M  I  P  Y  H  W  R  V  I  K  F  S  I  I  R  V  P  C  Q  W  *  A  I  V  V  V  Y  A  L  M  I  L  *  A  L  R  *  R  L  T  *  K  V  R  I  S  W  I  L  R  K  A  S  A  M  M  N  L  L  V  R  L  G  F  W  L  S  Q  M  L  R  I  L  *  L  D  P  R  Q  F  L  R  D  L  R  S  R  S  L  I  K  I  *  M  Q  Q  S  A  A  V  F  L  K  W  T  T  Y  P  Y  G  D  I  H  L  S  V  E  G  D  Q  K  W  K  T  H  S  Q  L  F  L  D  S  *  K  F  L  Y  R  C  *  L  V  I  A  C  L  M  D  C  L  D  A  *  V  I  *  R  L  I  S  L  E  F  M  M  A  M  V  V  L  R :   W  Q  I  T  A  E  T  G  F  M  L  Y  W  L  R  S  W  K  L  L  * </first_frame>
            <second_frame>  Y  S  I  I  C  A  *  R  E  Q  K  *  R  D  Y  V  A  *  C  D  I  *  K  *  K  Q  L  D  C  W  *  C  C  C  *  G  K  *  G  *  *  F  L  I  T  G  G  *  S  N  S  R  *  F  V  F  P  V  S  G  E  R  L  *  *  F  M  R  *  *  F  Y  R  L  *  D  S  V  *  H  R  R  S  G  F  R  G  F  S  E  K  H  Q  P  *  *  T  Y  W  *  D  W  G  F  G  *  V  R  C  *  G  Y  F  D  *  T  R  G  S  S  *  E  T  *  G  A  D  H  *  *  R  F  E  C  N  S  Q  P  Q  C  F  *  S  G  L  H  T  L  M  G  I  Y  I  Y  L  W  K  E  T  R  N  G  R  R  I  R  N  C  S  *  I  H  E  N  S  S  T  D  V  N  W  *  S  R  A  *  W  T  V  *  T  L  E  S  F  D  D  S  F  L  W  S  L  *  W  P  W  W  F  S   : G  G  K  L  L  P  R  P  D  S  C  C  I  G  *  G  V  G  N  F  Y   </second_frame>
            <third_frame>   T  A  S  S  V  P  E  E  S  R  S  E  G  T  M  S  L  D  V  I  S  E  N  E  S  N  W  I  A  G  D  A  V  V  R  E  S  E  D  D  D  S  L  S  L  E  G  D  Q  I  L  D  N  S  C  S  L  S  V  V  S  D  C  S  S  L  C  A  D  D  F  I  G  F  E  I  A  S  D  I  E  G  Q  D  F  V  D  S  Q  K  S  I  S  H  D  E  L  I  G  K  T  G  V  L  V  E  S  D  V  E  D  T  L  I  R  P  A  A  V  P  E  R  L  E  E  Q  I  T  D  K  D  L  N  A  T  V  S  R  S  V  F  E  V  D  Y  I  P  L  W  G  Y  T  S  I  C  G  R  R  P  E  M  E  D  A  F  A  T  V  P  R  F  M  K  I  P  L  P  M  L  I  G  D  R  V  L  D  G  L  S  R  R  L  S  H  L  T  T  H  F  F  G  V  Y  D  G  H  G  G  S  Q  :  V  A  N  Y  C  R  D  R  I  H  A  V  L  A  E  E  L  E  T  F  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31637" stop="31008"/>
                    <exon start="30912" stop="30850"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TASSVPEESRSEGTMSLDVISENESNWIAGDAVVRESEDDDSLSLEGDQILDNSCSLSVVSDCSSLCADDFIGFEIASDIEGQDFVDSQKSISHDELIGKTGVLVESDVEDTLIRPAAVPERLEEQITDKDLNATVSRSVFEVDYIPLWGYTSICGRRPEMEDAFATVPRFMKIPLPMLIGDRVLDGLSRRLSHLTTHFFGVYDGHGGSQVANYCRDRIHAVLAEELETFM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="50788" PGL_stop="42199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50788" e_stop="50582"/>
            <exon e_start="50256" e_stop="50224"/>
            <exon e_start="48569" e_stop="48341"/>
            <exon e_start="47818" e_stop="47686"/>
            <exon e_start="43261" e_stop="42352"/>
            <exon e_start="42208" e_stop="42199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.932" e_score="0.928"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50788" e_stop="50582" e_length="207"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50256" e_stop="50224" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.910">
            <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48569" e_stop="48341" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.829">
            <gDNA_intron_boundary i_start="48340" i_stop="47819" i_length="522"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47818" e_stop="47686" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.964">
            <gDNA_intron_boundary i_start="47685" i_stop="43262" i_length="4424"/>
          </intron>
          <exon e_serial="5" e_score="0.928">
            <gDNA_exon_boundary e_start="43261" e_stop="42352" e_length="910"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.932">
            <gDNA_intron_boundary i_start="42351" i_stop="42209" i_length="143"/>
          </intron>
          <exon e_serial="6" e_score="0.700">
            <gDNA_exon_boundary e_start="42208" e_stop="42199" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50788" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48341"/>
              <exon start="47818" stop="47686"/>
              <exon start="43261" stop="42634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43210" stop="42352"/>
              <exon start="42208" stop="42199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320427" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAAAATTTTCATTTTCCCCCTCTCCCTTCCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG : ATGTTGAAGAGTTTTATCAACAATGTGACCCAG : AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG : GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG : GTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTTTTTTGTTCCCTCTCCTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTCGTGTTTACGTGGGTTCGGAAAAGGACTGTATGCATGTAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTGAGGTATTGCCTATATATTTTTTGGTTTTCTATCTCATGTGTTGTGTTTGTTTTGAAGTTCAACTAATTTGGATTTACGCTTAAAA : AAGGAAAATA</gDNA_template>
            <first_frame> P  K  I  F  I  F  P  L  S  L  P  S  I  L  S  L  C  L  S  F  L  S  L  N  F  L  S  H  Q  Q  S  H  F  C  V  S  *  W  M  E  L  S  S  T  I  L  E  L  L  K  K  C  L  E  I  L  R  V  E  E  L  H  L  S  K  P  L  L  L  :  M  L  K  S  F  I  N  N  V  T  Q  :  R  K  R  T  S  A  F  M  D  F  P  V  K  V  G  K  S  I  Y  Q  L  K  K  C  P  Q  S  F  L  S  L  L  W  A  *  T  S  P  E  M  A  C  K  R  R  T  G  S  P  W  L  L  C  I  V  M  H  G  Y  F  L  L  P  F  I  L  V  L  D  L  G  L  I  E  L  I   : G  E  G  C  S  I  *  *  M  I  S  L  Q  F  S  R  L  C  L  G  Q  P  R  N  N  Q  K  T  S  H  Q  C  Q  I  T  A  A  P  S  L  S  Q  T  Q  R :   W  Y  N  V  V  L  N  L  R  S  S  I  Q  D  H  N  Q  K  M  T  M  K  M  V  W  M  K  M  M  S  K  E  K  H  Y  V  V  L  V  V  K  T  M  H  L  M  N  S  G  S  A  V  T  Y  V  R  Y  G  S  M  G  S  V  L  K  S  L  L  P  G  L  S  I  S  S  S  T  S  A  H  L  A  P  A  A  R  E  H  A  L  D  C  T  C  V  I  E  V  Y  P  L  *  S  H  E  N  C  *  D  L  F  A  V  *  E  V  D  F  L  W  E  A  L  R  C  H  M  F  Y  S  T  L  Q  L  S  I  I  *  L  Q  E  C  C  C  L  A  S  F  S  S  M  S  C  C  E  *  C  R  L  P  L  *  I  S  R  C  V  G  *  S  Y  C  V  M  T  V  Q  I  S  S  S  C  L  C  T  V  E  G  S  H  F  S  Q  L  C  D  V  K  K  M  L  F  F  P  K  F  V  L  S  I  F  C  F  L  W  P  A  I  F  F  V  P  S  P  P  L  L  F  D  S  F  *  S  S  *  Y  S  S  V  H  E  A  S  R  V  Y  V  G  S  E  K  D  C  M  H  V  M  W  L  V  H  L  N  S  *  S  N  K  S  S  C  V  F  D  *  G  I  A  Y  I  F  F  G  F  L  S  H  V  L  C  L  F  *  S  S  T  N  L  D  L  R  L  K  :  K  E  N  </first_frame>
            <second_frame>  P  K  F  S  F  S  P  S  P  F  P  P  F  S  L  S  V  *  A  F  S  L  *  T  F  S  L  I  S  K  A  I  S  V  S  H  D  G  W  S  S  A  V  Q  S  S  N  C  *  R  S  V  *  R  F  *  G  S  K  S  C  T  C  Q  S  P  Y  Y  * :   C  *  R  V  L  S  T  M  *  P  R :   E  R  E  P  L  P  L  W  I  S  Q  *  K  L  G  S  Q  F  T  S  *  R  S  A  P  R  A  S  *  A  C  F  G  H  K  L  R  P  R  W  H  A  R  E  G  L  A  L  L  G  C  C  A  *  *  C  M  V  T  F  C  C  L  L  F  W  C  *  I  W  V  *  *  S  *  *  :  E  K  V  V  Q  Y  D  K  *  S  P  Y  N  F  R  G  C  V  W  D  S  Q  E  T  I  K  R  Q  V  I  N  V  K  S  Q  Q  H  Q  V  *  V  K  L  K   : G  G  T  T  W  F  *  I  S  D  Q  V  F  K  T  T  T  K  R  *  R  *  R  W  F  G  *  R  *  *  A  R  R  N  T  M  W  C  L  W  *  K  L  C  I  *  *  I  L  D  L  L  *  H  M  *  G  M  V  P  W  E  V  C  *  N  H  S  C  Q  G  *  A  Y  Q  A  V  Q  V  P  I  L  H  Q  Q  Q  E  N  T  P  L  I  A  P  A  L  L  R  F  I  L  C  E  V  M  K  T  V  K  I  F  S  R  Y  E  K  W  I  S  Y  G  K  L  F  D  A  I  C  S  I  Q  H  Y  N  Y  L  L  S  S  C  K  N  V  V  V  *  R  L  F  L  V  C  R  A  V  N  D  V  G  C  L  S  K  L  V  V  V  *  V  E  V  I  V  S  *  L  F  K  S  Q  V  V  V  S  A  L  L  R  E  A  I  F  L  S  Y  V  M  L  R  R  C  C  S  S  P  N  L  F  C  Q  S  F  V  S  C  G  L  Q  F  F  L  F  P  L  L  P  S  Y  L  I  H  S  E  V  A  D  T  V  Q  C  T  K  H  L  V  F  T  W  V  R  K  R  T  V  C  M  *  C  G  *  Y  I  L  I  L  E  V  T  S  L  A  V  Y  L  I  E  V  L  P  I  Y  F  L  V  F  Y  L  M  C  C  V  C  F  E  V  Q  L  I  W  I  Y  A  *  K :   R  K  I </second_frame>
            <third_frame>   Q  N  F  H  F  P  P  L  P  S  L  H  S  L  S  L  S  K  L  S  L  S  K  L  S  L  S  S  A  K  P  F  L  C  L  M  M  D  G  A  Q  Q  Y  N  P  R  T  V  E  E  V  F  R  D  F  K  G  R  R  A  A  L  V  K  A  L  T  T   : D  V  E  E  F  Y  Q  Q  C  D  P   : E  K  E  N  L  C  L  Y  G  F  P  S  E  S  W  E  V  N  L  P  A  E  E  V  P  P  E  L  P  E  P  A  L  G  I  N  F  A  R  D  G  M  Q  E  K  D  W  L  S  L  V  A  V  H  S  D  A  W  L  L  S  V  A  F  Y  F  G  A  R  F  G  F  D  R  A  D  R :   R  R  L  F  N  M  I  N  D  L  P  T  I  F  E  V  V  S  G  T  A  K  K  Q  S  K  D  K  S  S  M  S  N  H  S  S  T  K  S  K  S  N  S  K  :  V  V  Q  R  G  S  E  S  Q  I  K  Y  S  R  P  Q  P  K  D  D  D  E  D  G  L  D  E  D  D  E  Q  G  E  T  L  C  G  A  C  G  E  N  Y  A  S  D  E  F  W  I  C  C  D  I  C  E  V  W  F  H  G  K  C  V  K  I  T  P  A  R  A  E  H  I  K  Q  Y  K  C  P  S  C  T  S  S  K  R  T  R  P  *  L  H  L  R  Y  *  G  L  S  F  V  K  S  *  K  L  L  R  S  F  R  G  M  R  S  G  F  L  M  G  S  S  S  M  P  Y  V  L  F  N  I  T  I  I  Y  Y  L  V  A  R  M  L  L  S  S  V  F  F  *  Y  V  V  L  *  M  M  *  V  A  S  L  N  *  S  L  C  R  L  K  L  L  C  H  D  C  S  N  L  K  *  L  S  L  H  C  *  G  K  P  F  F  S  V  M  *  C  *  E  D  A  V  L  P  Q  I  C  F  V  N  L  L  F  P  V  A  C  N  F  F  C  S  L  S  S  P  L  I  *  F  I  L  K  *  L  I  Q  F  S  A  R  S  I  S  C  L  R  G  F  G  K  G  L  Y  A  C  N  V  V  S  T  S  *  F  L  K  *  Q  V  *  L  C  I  *  L  R  Y  C  L  Y  I  F  W  F  S  I  S  C  V  V  F  V  L  K  F  N  *  F  G  F  T  L  K   : K  G  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50786" stop="50582"/>
                    <exon start="50256" stop="50224"/>
                    <exon start="48569" stop="48341"/>
                    <exon start="47818" stop="47686"/>
                    <exon start="43261" stop="42989"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNFHFPPLPSLHSLSLSKLSLSKLSLSSAKPFLCLMMDGAQQYNPRTVEEVFRDFKGRRAALVKALTTDVEEFYQQCDPEKENLCLYGFPSESWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDRADRRRLFNMINDLPTIFEVVSGTAKKQSKDKSSMSNHSSTKSKSNSKVVQRGSESQIKYSRPQPKDDDEDGLDEDDEQGETLCGACGENYASDEFWICCDICEVWFHGKCVKITPARAEHIKQYKCPSCTSSKRTRP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42737" stop="42492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFKSQVVVSALLREAIFLSYVMLRRCCSSPNLFCQSFVSCGLQFFLFPLLPSYLIHSEVADTVQCTKHLVFTWVRKRTVCM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="58893" PGL_stop="52239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58893" e_stop="58850"/>
            <exon e_start="58708" e_stop="58553"/>
            <exon e_start="57821" e_stop="57592"/>
            <exon e_start="57501" e_stop="57462"/>
            <exon e_start="57363" e_stop="57209"/>
            <exon e_start="57111" e_stop="57010"/>
            <exon e_start="56094" e_stop="56050"/>
            <exon e_start="55960" e_stop="55820"/>
            <exon e_start="55083" e_stop="54988"/>
            <exon e_start="54897" e_stop="54796"/>
            <exon e_start="52440" e_stop="52239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.721" e_score="1.000"/>
          <exon-intron don_prob="0.751" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.558" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.083" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58893" e_stop="58850" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.721">
            <gDNA_intron_boundary i_start="58849" i_stop="58709" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58708" e_stop="58553" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.751" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58552" i_stop="57822" i_length="731"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57821" e_stop="57592" e_length="230"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57591" i_stop="57502" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57501" e_stop="57462" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.558">
            <gDNA_intron_boundary i_start="57461" i_stop="57364" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57363" e_stop="57209" e_length="155"/>
          </exon>
          <intron i_serial="5" don_prob="0.703" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="57111" e_stop="57010" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.865">
            <gDNA_intron_boundary i_start="57009" i_stop="56095" i_length="915"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56094" e_stop="56050" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.787" acc_prob="0.083">
            <gDNA_intron_boundary i_start="56049" i_stop="55961" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55960" e_stop="55820" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="55819" i_stop="55084" i_length="736"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="55083" e_stop="54988" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54987" i_stop="54898" i_length="90"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="54897" e_stop="54796" e_length="102"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54795" i_stop="52441" i_length="2355"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="52440" e_stop="52239" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58893" stop="58850"/>
              <exon start="58708" stop="58553"/>
              <exon start="57821" stop="57592"/>
              <exon start="57501" stop="57462"/>
              <exon start="57363" stop="57209"/>
              <exon start="57111" stop="57010"/>
              <exon start="56094" stop="56050"/>
              <exon start="55960" stop="55820"/>
              <exon start="55083" stop="54988"/>
              <exon start="54897" stop="54796"/>
              <exon start="52440" stop="52239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGA : GTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG : GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG : GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG : CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG : ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA : GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAA : GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG : GGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAA : ATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAG : GGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTTTCTATTTTCGTTCATC</gDNA_template>
            <first_frame> E  L  W  S  T  T  W  I  C  S  S  S  Y  *  E :   W  W  I  Q  Y  F  P  T  Q  T  Y  *  R  E  A  Q  N  T  S  A  T  S  Y  A  D  R  F  K  R  M  G  C  G  L  C  L  V  I  S  A  T  L  S  V  A  D  V  E  Q  C  G  W :   T  S  *  I  L  F  S  N  *  *  K  N  C  C  S  K  N  P  S  Y  G  *  Y  D  I  R  F  S  L  F  *  E  E  S  K  T  P  G  D  S  S  S  S  Y  S  F  I  G  S  N  T  S  C  K  *  K  C  F  N  D  G  *  V  L  *  *  G  G  R  F  P  R  G  *  S  R   : G  N  A  T  *  P  *  T  *  N  E  E  N  C :   T  R  R  R  T  F  G  S  N  *  F  F  H  L  F  G  *  P  S  T  *  *  P  R  *  W  S  *  L  L  E  N  I  *  W  K  *  L  Q  S  S  *  Q  E  L  L  L  *  *  I  K   : D  S  C  W  *  T  S  D  G  S  C  C  C  *  L  V  *  R  Y  K  T  N  G  P  C  C  *  T  S  W  L  C  S  T   : S  C  F  R  K  R  T  V  F  F  N  F  *  C  A   : S  S  W  I  N  T  L  Q  H  G  F  L  F  C  H  E  R  V  N  I  W  F  S  F  A  T  V  C  *  W  G  *  R  V  P  *  *  *  N  E  A  H  P  V  C  A  K   : G  L  M  D  C  A  S  E  C  R  K  Y  S  L  F  T  G  E  G  S  *  L  H  L  Y  P  R  S  Q  V  F  G   : N  *  C  *  Y  W  F  F  H  C  R  E  W  S  F  G  A  C  D  W  C  N  Y  E  P  S  S  *  H  G  F  S  C  T   : G  K  L  S  R  *  V  A  *  A  T  N  R  R  C  T  C  I  S  Y  R  T  L  S  C  C  C  T  K  I  G  A  *  Y  Y  R  V  G  Q  T  T  H  I  V  H  L  L  Q  K  L  I  L  E  T  Y  V  Y  I  D  V  V  P  F  Y  F  R  S   </first_frame>
            <second_frame>  N  C  G  P  L  P  G  Y  V  R  A  H  I  E   : S  G  G  F  N  I  S  P  L  K  P  I  N  G  R  P  R  T  Q  V  Q  H  L  M  Q  I  D  L  K  G  W  G  V  G  Y  V  S  S  F  Q  Q  H  C  L  L  Q  M  L  N  S  V  A   : G  L  R  E  Y  F  S  Q  T  D  E  R  T  A  A  P  R  I  P  V  M  V  N  M  T  S  A  S  V  S  S  K  R  N  Q  K  L  Q  E  T  P  H  H  R  T  R  S  L  D  Q  I  R  A  A  N  R  N  A  S  M  M  D  E  Y  S  D  E  E  E  D  F  Q  G  A  D  Q  E  :  V  M  P  P  S  P  E  R  E  M  K  R  T   : A  L  E  E  E  P  L  D  Q  I  D  F  S  I  F  S  G  N  L  R  R  D  D  R  D  N  G  R  N  C  W  R  I  S  D  G  N  N  F  R  V  R  S  K  N  F  C  Y  D  K  S  K  :  I  P  A  G  K  P  L  M  D  L  V  A  A  D  W  F  K  D  T  K  R  M  D  H  V  A  R  R  P  G  C  A  A  Q  :  V  A  S  E  K  G  L  F  S  L  I  F  N  V  Q  :  V  P  G  S  T  H  Y  S  M  V  F  Y  F  V  M  K  E  L  T  S  G  S  L  L  Q  R  F  V  D  G  D  D  E  F  R  N  S  R  M  K  L  I  P  S  V  P  K  :  G  S  W  I  V  R  Q  S  V  G  S  T  P  C  L  L  G  K  A  V  D  C  T  Y  I  R  G  P  K  Y  L  E  :  I  D  V  D  I  G  S  S  T  V  A  N  G  V  L  G  L  V  I  G  V  I  T  S  L  V  V  D  M  A  F  L  V  Q  :  G  N  S  P  D  E  L  P  E  Q  L  I  G  A  V  R  A  S  H  I  E  L  S  A  A  V  V  P  K  L  E  P  D  T  T  E  *  V  K  P  H  T  *  F  T  F  F  R  S  *  F  L  K  H  T  Y  T  *  M  *  F  L  S  I  F  V  H  </second_frame>
            <third_frame>   I  V  V  H  Y  L  D  M  F  E  L  I  L  R  :  V  V  D  S  I  F  P  H  S  N  L  L  T  G  G  P  E  H  K  C  N  I  L  C  R  S  I  *  K  D  G  V  W  A  M  S  R  H  F  S  N  I  V  C  C  R  C  *  T  V  W  L  :  D  F  V  N  T  F  L  K  L  M  K  E  L  L  L  Q  E  S  Q  L  W  L  I  *  H  P  L  Q  S  L  L  R  G  I  K  N  S  R  R  L  L  I  I  V  L  V  H  W  I  K  Y  E  L  Q  I  E  M  L  Q  *  W  M  S  T  L  M  R  R  K  I  S  K  G  L  I  K  R :   *  C  H  L  A  L  N  V  K  *  R  E  L  :  H  S  K  K  N  L  W  I  K  L  I  F  P  S  F  R  V  T  F  D  V  M  T  A  I  M  V  V  T  A  G  E  Y  L  M  E  I  T  S  E  F  V  A  R  T  F  A  M  I  N  Q  R :   F  L  L  V  N  L  *  W  I  L  L  L  L  T  G  L  K  I  Q  N  E  W  T  M  L  L  D  V  L  V  V  Q  H  K :   L  L  Q  K  K  D  C  F  L  *  F  L  M  C  K :   F  L  D  Q  H  T  T  A  W  F  S  I  L  S  *  K  S  *  H  L  V  L  F  C  N  G  L  L  M  G  M  T  S  S  V  I  V  E  *  S  S  S  R  L  C  Q  R :   A  H  G  L  C  V  R  V  S  E  V  L  L  V  Y  W  G  R  Q  L  T  A  P  I  S  A  V  P  S  I  W  K :   L  M  L  I  L  V  L  P  L  S  R  M  E  F  W  G  L  *  L  V  *  L  R  A  *  *  L  T  W  L  F  L  Y  R :   E  T  L  P  M  S  C  L  S  N  *  *  A  L  Y  V  H  L  I  *  N  S  Q  L  L  L  Y  Q  N  W  S  L  I  L  Q  S  R  S  N  H  T  H  S  S  P  S  S  E  V  D  S  *  N  I  R  I  H  R  C  S  S  F  L  F  S  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58892" stop="58850"/>
                    <exon start="58708" stop="58553"/>
                    <exon start="57821" stop="57592"/>
                    <exon start="57501" stop="57462"/>
                    <exon start="57363" stop="57209"/>
                    <exon start="57111" stop="57010"/>
                    <exon start="56094" stop="56050"/>
                    <exon start="55960" stop="55820"/>
                    <exon start="55083" stop="54988"/>
                    <exon start="54897" stop="54796"/>
                    <exon start="52440" stop="52330"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1218</number_coding_nucleotides>
                  <number_encoded_amino_acids>406</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NCGPLPGYVRAHIESGGFNISPLKPINGRPRTQVQHLMQIDLKGWGVGYVSSFQQHCLLQMLNSVAGLREYFSQTDERTAAPRIPVMVNMTSASVSSKRNQKLQETPHHRTRSLDQIRAANRNASMMDEYSDEEEDFQGADQEVMPPSPEREMKRTALEEEPLDQIDFSIFSGNLRRDDRDNGRNCWRISDGNNFRVRSKNFCYDKSKIPAGKPLMDLVAADWFKDTKRMDHVARRPGCAAQVASEKGLFSLIFNVQVPGSTHYSMVFYFVMKELTSGSLLQRFVDGDDEFRNSRMKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCTYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITSLVVDMAFLVQGNSPDELPEQLIGAVRASHIELSAAVVPKLEPDTTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="73627" PGL_stop="67779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73627" e_stop="73554"/>
            <exon e_start="71871" e_stop="71823"/>
            <exon e_start="70985" e_stop="70877"/>
            <exon e_start="69749" e_stop="69656"/>
            <exon e_start="69048" e_stop="68915"/>
            <exon e_start="68537" e_stop="68374"/>
            <exon e_start="67995" e_stop="67779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.421" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73627" e_stop="73554" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.421" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73553" i_stop="71872" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71871" e_stop="71823" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.863" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70985" e_stop="70877" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69749" e_stop="69656" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69048" e_stop="68915" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68537" e_stop="68374" e_length="164"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68373" i_stop="67996" i_length="378"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67995" e_stop="67779" e_length="217"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73627" stop="73554"/>
              <exon start="71871" stop="71823"/>
              <exon start="70985" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68374"/>
              <exon start="67995" stop="67779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG : GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG : GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA : CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA : GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG : GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT : GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</gDNA_template>
            <first_frame> R  K  I  I  F  *  K  S  I  F  H  I  Y  N  F  F  K  M  S  L  F  G  L  G  R :   N  Q  R  T  F  R  P  K  K  S  A  P  S  G  S  K  :  G  A  Q  L  R  Q  H  I  D  S  T  L  G  S  G  N  L  R  E  A  V  R  L  P  P  G  E  D  I  N  E  W  L  A  V  N   : T  V  D  F  F  N  Q  V  N  L  L  Y  G  T  L  T  E  F  C  T  P  E  N  C  P  T  M  T  A  G  P  K :   Y  E  Y  R  W  A  D  G  V  Q  I  K  K  P  I  E  V  S  A  P  K  Y  V  E  Y  L  M  D  W  I  E  T  Q  L  D  D  E  S  L  F  P  Q  R  L   : G  A  P  F  P  P  N  F  K  D  V  V  K  T  I  F  K  R  L  F  R  V  Y  A  H  I  Y  H  S  H  F  Q  K  I  V  S  L  K  E  E  A  H  L  N  T  C  F  K  H  F  I  L  F  T  H  :  E  F  G  L  I  D  K  K  E  L  A  P  L  Q  D  L  I  D  S  I  I  V  P  Y  *  S  S  S  F  S  F  C  F  *  P  I  F  N  R  K  L  M  S  M  V  *  *  K  C  I  F  T  I  L  *  *  V  C  S  L  K  V  *  H  F  N  I  I  I  D  I  V  </first_frame>
            <second_frame>  E  K  S  F  F  R  N  P  F  F  I  Y  I  I  F  L  K  *  V  Y  L  V  L  E   : G  I  R  E  H  S  V  P  K  R  V  H  P  Q  G  V  R :   V  H  N  *  D  S  T  L  I  L  L  *  A  A  E  T  *  E  R  L  *  G  F  L  L  G  K  I  L  M  N  G  *  L  S  T  :  L  *  I  S  S  T  R  *  I  C  F  M  A  P  S  L  S  S  V  H  Q  K  T  A  Q  Q  *  L  Q  A  P   : S  M  S  I  G  G  L  M  V  Y  K  S  R  S  L  L  K  F  L  L  R  N  M  L  N  I  *  W  T  G  L  K  L  N  W  M  M  N  L  Y  F  L  K  G  L  :  V  H  L  F  H  L  T  S  R  M  L  S  R  R  Y  S  N  V  S  F  V  Y  M  H  I  S  I  T  P  I  F  R  R  S  *  V  L  R  R  K  H  I  *  I  R  A  S  S  I  S  F  S  S  P  M :   N  L  G  *  L  T  K  R  S  *  L  H  S  K  I  S  *  I  L  L  L  C  L  T  N  H  L  L  S  V  F  A  F  N  L  F  L  I  G  N  *  *  V  W  C  D  K  N  V  F  L  P  F  Y  N  K  Y  V  V  *  K  F  D  I  L  I  S  L  L  I  L  C </second_frame>
            <third_frame>   K  N  H  F  L  E  I  H  F  S  Y  I  *  F  F  *  N  E  S  I  W  S  W  K  :  E  S  E  N  I  P  S  Q  K  E  C  T  L  R  E  *   : G  C  T  I  K  T  A  H  *  F  Y  F  R  Q  R  K  L  E  R  G  C  K  A  S  S  W  G  R  Y  *  *  M  A  S  C  Q  H :   C  R  F  L  Q  P  G  E  S  A  L  W  H  P  H  *  V  L  Y  T  R  K  L  P  N  N  D  C  R  P  Q  :  V  *  V  *  V  G  *  W  C  T  N  Q  E  A  Y  *  S  F  C  S  E  I  C  *  I  F  D  G  L  D  *  N  S  I  G  *  *  I  F  I  S  S  K  A  W :   C  T  F  S  T  *  L  Q  G  C  C  Q  D  D  I  Q  T  S  L  S  C  I  C  T  Y  L  S  L  P  F  S  E  D  R  E  S  *  G  G  S  T  F  E  Y  V  L  Q  A  F  H  S  L  H  P   : *  I  W  V  D  *  Q  K  G  A  S  S  T  P  R  S  H  R  F  Y  Y  C  A  L  L  I  I  F  F  Q  F  L  L  L  T  Y  F  *  *  E  I  N  E  Y  G  V  I  K  M  Y  F  Y  H  S  I  I  S  M  *  S  K  S  L  T  F  *  Y  H  Y  *  Y  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73609" stop="73554"/>
                    <exon start="71871" stop="71823"/>
                    <exon start="70985" stop="70877"/>
                    <exon start="69749" stop="69656"/>
                    <exon start="69048" stop="68915"/>
                    <exon start="68537" stop="68374"/>
                    <exon start="67995" stop="67921"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSIFHIYNFFKMSLFGLGRNQRTFRPKKSAPSGSKGAQLRQHIDSTLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQVNLLYGTLTEFCTPENCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIETQLDDESLFPQRLGAPFPPNFKDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTHEFGLIDKKELAPLQDLIDSIIVPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="76277" PGL_stop="78390"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76277" e_stop="76783"/>
            <exon e_start="78147" e_stop="78390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76277" e_stop="76783" e_length="507"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.932">
            <gDNA_intron_boundary i_start="76784" i_stop="78146" i_length="1363"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78147" e_stop="78390" e_length="244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76277" stop="76783"/>
              <exon start="78147" stop="78390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322774" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTCCCAATGCTTCCTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT : TGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAG</gDNA_template>
            <first_frame> M  S  Q  C  F  L  L  A  *  S  L  N  *  L  I  Q  I  C  T  K  S  T  S  K  I  S  I  F  K  L  M  E  V  L  I  K  L  N  Q  P  P  *  *  *  L  S  K  T  L  D  L  S  P  Y  *  V  T  P  T  T  F  A  L  Y  I  S  Y  T  E  S  L  K  H  L  Y  I  N  S  S  G  D  N  N  F  W  V  Q  L  F  L  V  N  C  E  V  G  I  W  G  F  L  F  S  F  L  G  G  R  *  V  W  R  R  R  M  G  T  D  R  R  S  R  L  C  S  G  R  N  W  S  I  K  L  *  Y  I  S  I  W  W  L  V  F  R  C  R  R  T  L  L  C  L  Y  D  V  A  L  N  P  F  Q  Q  G  S  F  I  I  L  A  :  W  G  T  V  P  I  M  G  R  S  L  I  L  S  Q  E  G  V  E  G  Q  M  E  R  S  G  G  A  P  K  M  H  I  L  T  Q  S  I  A  S  G  T  C  I  E  A  A  T  V  Q  E  S  M  W  N  L  N  R  L  P  S  P  C  *  L  V  C  H  I  I  L  L  G  A  L  L  G  A  A  K  Q  </first_frame>
            <second_frame>  C  P  N  A  S  F  *  L  N  L  S  I  N  S  S  K  F  V  L  N  Q  P  Q  K  S  P  F  L  S  *  W  R  Y  *  S  N  L  I  N  P  L  N  D  N  Y  P  K  P  *  I  C  P  L  I  R  *  L  Q  Q  L  L  L  S  I  S  H  T  L  K  V  *  N  T  F  I  L  T  P  V  V  I  I  I  S  G  Y  S  F  F  W  *  I  V  K  W  V  F  G  D  F  C  F  L  F  *  V  G  D  E  Y  G  G  G  E  W  V  Q  T  A  V  H  G  C  A  V  A  G  I  G  A  S  S  Y  D  I  *  V  F  G  G  W  Y  S  G  A  G  G  P  C  C  A  Y  T  T  *  L  *  T  H  F  S  K  V  L  S  S  S  *  L :   G  V  L  F  L  L  W  E  E  V  *  S  *  A  R  K  V  *  K  D  R  W  K  E  V  E  V  R  Q  R  C  I  S  *  L  K  V  L  R  A  A  H  A  S  R  P  Q  P  F  K  K  A  C  G  I  S  I  D  C  P  V  L  V  D  *  Y  V  T  *  Y  Y  W  E  H  Y  W  E  Q  Q  N  K </second_frame>
            <third_frame>   V  P  M  L  P  F  S  L  I  S  Q  L  T  H  P  N  L  Y  *  I  N  L  K  N  L  H  F  *  A  N  G  G  T  N  Q  T  *  S  T  P  L  M  I  I  I  Q  N  P  R  S  V  P  L  L  G  N  S  N  N  F  C  S  L  Y  L  I  H  *  K  S  E  T  P  L  Y  *  L  Q  W  *  *  *  F  L  G  T  A  F  F  G  E  L  *  S  G  Y  L  G  I  F  V  F  F  F  R  W  E  M  S  M  A  A  E  N  G  Y  R  P  P  F  T  A  V  Q  W  Q  E  L  E  H  Q  A  M  I  Y  K  Y  L  V  A  G  I  P  V  P  A  D  L  V  V  P  I  R  R  S  F  E  P  I  S  A  R  F  F  H  H  P  S   : L  G  Y  C  S  Y  Y  G  K  K  F  D  P  E  P  G  R  C  R  R  T  D  G  K  K  W  R  C  A  K  D  A  Y  P  D  S  K  Y  C  E  R  H  M  H  R  G  R  N  R  S  R  K  H  V  E  S  Q  S  T  A  Q  S  L  L  T  S  M  S  H  N  T  T  G  S  T  T  G  S  S  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76558" stop="76783"/>
                    <exon start="78147" stop="78388"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGYLGIFVFFFRWEMSMAAENGYRPPFTAVQWQELEHQAMIYKYLVAGIPVPADLVVPIRRSFEPISARFFHHPSLGYCSYYGKKFDPEPGRCRRTDGKKWRCAKDAYPDSKYCERHMHRGRNRSRKHVESQSTAQSLLTSMSHNTTGSTTGSSKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="88134" PGL_stop="84593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88134" e_stop="88053"/>
            <exon e_start="86540" e_stop="86294"/>
            <exon e_start="86136" e_stop="85864"/>
            <exon e_start="84914" e_stop="84593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88134" e_stop="88053" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="88052" i_stop="86541" i_length="1512"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86540" e_stop="86294" e_length="247"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.951">
            <gDNA_intron_boundary i_start="86293" i_stop="86137" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86136" e_stop="85864" e_length="273"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.985">
            <gDNA_intron_boundary i_start="85863" i_stop="84915" i_length="949"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84914" e_stop="84593" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88134" stop="88053"/>
              <exon start="86540" stop="86294"/>
              <exon start="86136" stop="85864"/>
              <exon start="84914" stop="84593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATG : GTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG : CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAG : GTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTA</gDNA_template>
            <first_frame> L  L  Y  *  Q  N  F  N  F  K  *  F  F  L  R  A  S  R  T  L  H  *  A  A  P  F  H   : G  R  D  D  Y  K  G  S  V  Q  E  I  R  K  M  E  S  S  A  S  Y  I  W  S  L  L  G  H  G  N  R  R  W  L  W  G  G  M  G  S  W  I  W  S  *  G  Y  W  L  C  W  S  W  M  W  C  W  I  Q  R  W  L  L  S  A  R  R  W  H  W  S  T  C  Q  L  H  L  H  R  S  L  Q  C :   I  H  S  C  Q  K  W  C  Y  *  D  V  S  I  N  *  Y  S  K  H  E  K  H  C  G  R  E  S  V  L  P  R  F  K  Y  C  W  L  P  R  K  S  D  S  V  F  F  K  H  K  V  Q  R  I  S  R  E  G  G  R  F  V  *  N  A  N  Q  N  V  F  S  G  S  M  H  G  S  S  K  T  R  H  Q  *  L  I  S  S  L  Q  R :   F  K  G  L  S  N  M  L  R  S  T  I  P  E  G  L  I  Y  I  A  H  F  T  A  L  A  L  V  F  L  P  S  H  R  *  *  G  A  Y  R  *  K  K  K  E  H  L  Q  L  Q  L  L  T  C  F  H  F  F  *  F  G  K  H  C  L  N  E  S  E  N  L  N  *  Y  G  K  G  S  K  M  S  L  N  Y  R  E  R  S  *  Y  T  L  R  L  C  P  S  I  M  L  I  I  L  F  G  F  L </first_frame>
            <second_frame>  Y  Y  I  N  K  I  S  I  S  N  N  F  S  F  E  L  R  E  H  Y  T  E  Q  H  P  F  M  :  V  E  M  I  I  K  G  L  F  R  R  Y  E  R  W  N  P  V  H  P  T  Y  G  A  F  W  G  M  G  I  G  V  G  C  G  V  G  W  G  P  G  F  G  P  E  A  I  G  Y  V  G  A  G  C  G  V  G  F  S  V  G  F  S  L  L  G  V  G  I  G  L  P  A  N  Y  I  Y  T  G  P  Y  N   : A  F  T  A  A  R  S  G  A  I  E  M  S  R  S  T  D  I  R  S  M  R  N  I  V  E  E  S  R  C  Y  L  D  S  N  I  A  G  F  Q  E  R  V  I  Q  S  F  S  S  I  R  F  K  E  S  V  G  K  A  V  D  S  S  E  M  P  I  K  M  S  F  P  D  Q  C  M  D  R  L  K  Q  G  I  N  S  L  F  H  P  C  K   : G  S  K  D  *  A  T  C  *  G  A  Q  S  Q  K  G  *  Y  T  L  H  T  S  Q  H  W  P  *  F  F  C  L  P  T  D  S  R  E  H  I  G  R  R  K  K  S  I  Y  S  C  S  C  *  H  A  F  I  S  F  S  L  V  N  I  V  *  M  K  V  R  I  *  I  N  T  E  K  G  Q  K  C  L  *  T  I  A  K  G  H  N  I  P  F  V  F  V  H  L  L  C  *  *  Y  F  S  D  F   </second_frame>
            <third_frame>   T  I  L  T  K  F  Q  F  Q  I  I  F  P  S  S  F  A  N  I  T  L  S  S  T  L  S  W :   *  R  *  L  *  R  V  C  S  G  D  T  K  D  G  I  Q  C  I  L  H  M  E  P  S  G  A  W  E  *  A  L  A  V  G  W  D  G  V  L  D  L  V  L  R  L  L  V  M  L  E  L  D  V  V  L  D  S  A  L  A  S  L  C  S  A  L  A  L  V  Y  L  P  I  T  F  T  Q  V  L  T  M  :  H  S  Q  L  P  E  V  V  L  L  R  C  L  D  Q  L  I  F  E  A  *  E  T  L  W  K  R  V  G  V  T  S  I  Q  I  L  L  A  S  K  K  E  *  F  S  L  F  Q  A  *  G  S  K  N  Q  *  G  R  R  *  I  R  L  K  C  Q  S  K  C  L  F  R  I  N  A  W  I  V  *  N  K  A  S  I  A  Y  F  I  L  A  K  :  V  Q  R  I  K  Q  H  V  E  E  H  N  P  R  R  V  N  I  H  C  T  L  H  S  I  G  L  S  F  F  A  F  P  Q  I  V  G  S  I  *  V  E  E  K  R  A  F  T  V  A  V  V  N  M  L  S  F  L  L  V  W  *  T  L  F  E  *  K  *  E  F  E  L  I  R  K  R  V  K  N  V  S  E  L  S  R  K  V  I  I  Y  P  S  S  L  S  I  Y  Y  A  N  N  T  F  R  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88133" stop="88053"/>
                    <exon start="86540" stop="86294"/>
                    <exon start="86136" stop="85864"/>
                    <exon start="84914" stop="84901"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYINKISISNNFSFELREHYTEQHPFMVEMIIKGLFRRYERWNPVHPTYGAFWGMGIGVGCGVGWGPGFGPEAIGYVGAGCGVGFSVGFSLLGVGIGLPANYIYTGPYNAFTAARSGAIEMSRSTDIRSMRNIVEESRCYLDSNIAGFQERVIQSFSSIRFKESVGKAVDSSEMPIKMSFPDQCMDRLKQGINSLFHPCKGSKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="88742" PGL_stop="89267"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88742" e_stop="89267"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="88742" e_stop="89267" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88742" stop="89267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88743" stop="89184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTAT</gDNA_template>
            <first_frame> H  H  Q  P  I  K  T  M  *  R  E  V  V  K  Q  I  *  *  R  S  S  K  K  N  K  K  K  I  M  E  T  C  S  F  P  R  I  V  L  S  P  L  N  P  L  I  S  K  N  K  H  F  Q  I  P  K  S  K  Q  S  H  I  K  I  T  P  L  F  A  T  L  N  S  P  K  G  F  G  P  S  P  K  K  I  T  K  K  S  K  K  I  P  K  Q  E  N  E  D  Q  Y  D  D  N  D  D  N  D  D  D  D  E  Q  E  R  G  V  I  P  E  I  V  T  N  R  M  I  S  R  M  G  F  S  V  G  I  P  L  F  I  G  L  L  F  F  P  F  F  Y  Y  L  K  V  G  L  K  I  D  V  P  T  W  V  P  F  I  V  S  F  V  F  F  G  S  A  L  </first_frame>
            <second_frame>  T  T  N  Q  L  K  Q  C  E  E  K  L  *  S  K  S  S  E  E  V  Q  K  K  I  K  K  K  *  W  K  H  V  H  F  Q  E  L  Y  Y  L  L  *  I  H  *  Y  Q  K  T  N  T  F  K  F  P  N  P  N  N  H  I  *  K  S  H  L  F  L  Q  H  S  I  L  Q  K  V  L  D  L  P  L  R  K  L  P  K  N  P  R  K  Y  Q  N  K  K  M  K  I  N  T  T  I  T  M  I  M  M  M  M  M  N  K  K  E  E  L  Y  Q  R  *  *  L  I  E  *  *  V  E  W  D  F  Q  L  V  F  L  C  L  L  V  Y  C  F  F  L  F  F  I  I  L  R  L  V  *  K  L  M  Y  L  L  G  Y  L  L  L  C  H  L  C  F  L  G  V  P  Y </second_frame>
            <third_frame>   P  P  T  N  *  N  N  V  K  R  S  C  K  A  N  L  V  K  K  F  K  K  K  *  K  K  N  N  G  N  M  F  I  S  K  N  C  I  I  S  F  K  S  T  N  I  K  K  Q  T  L  S  N  S  Q  I  Q  T  I  T  Y  K  N  H  T  S  F  C  N  T  Q  F  S  K  R  F  W  T  F  P  *  E  N  Y  Q  K  I  Q  E  N  T  K  T  R  K  *  R  S  I  R  R  *  R  *  *  *  *  *  *  *  T  R  K  R  S  Y  T  R  D  S  N  *  *  N  D  K  *  N  G  I  F  S  W  Y  S  F  V  Y  W  F  I  V  F  S  F  F  L  L  S  *  G  W  F  K  N  *  C  T  Y  L  G  T  F  Y  C  V  I  C  V  F  W  E  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88796" stop="89266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKKNKKKIMETCSFPRIVLSPLNPLISKNKHFQIPKSKQSHIKITPLFATLNSPKGFGPSPKKITKKSKKIPKQENEDQYDDNDDNDDDDEQERGVIPEIVTNRMISRMGFSVGIPLFIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFVFFGSAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="100199" PGL_stop="101002"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100199" e_stop="100478"/>
            <exon e_start="100590" e_stop="100719"/>
            <exon e_start="100798" e_stop="101002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.933" e_score="0.993"/>
          <exon-intron don_prob="0.991" acc_prob="0.801" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="100199" e_stop="100478" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.933">
            <gDNA_intron_boundary i_start="100479" i_stop="100589" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100590" e_stop="100719" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.801">
            <gDNA_intron_boundary i_start="100720" i_stop="100797" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="100798" e_stop="101002" e_length="205"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100199" stop="100478"/>
              <exon start="100590" stop="100719"/>
              <exon start="100798" stop="101002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGGGCATGGACCATATCCATATCCAGATTTTGATGCAATCTCTAAGGGAGTTTTATATAATTACCAAACAGGAAGTTCAAATTCTACTCCAGCTTGGGATTTTACAAGTACTGGTCATTTCCAAACACCAACTAGAACTGATCCTAGATTAAGTGATGTGATGTTGGAAGATGAAGAGGAGGCTAAAGAGTGGACAGCACAAGTGGAGCCTGGAATTCAGATTACTTTTGATTCTCTTCCTCATGGTGGAAATGATCTTAAAAGAATCAGATTTAG : TCGGGACGTGTTCAACAAATGGCAAGCTCAAAGATGGTGGGGTGAAAATTATGACAGAATTATGGAGCTTTACAATGTTCAGAGATTTAATAAGTATGCTCTTCACACACCCTCACAGTCTGAGGATGGG : AGAGATTCAAATTATTCGTCAAGGCCGGGATCTGCAAGGGATTTCCAACAATACAATGCTGGATTAGGTGCTCATGTCCCTAGTTTCCCAAAGGGCAGTGGGGTATCAAGAACGACAACCTCCTCTAGAGACGAAGCTTCAGTTTCTGTAAGTAATGCTAGTGATATGGAGTCAGAATGGATAGAACAAGATGAACCTGGAGTGT</gDNA_template>
            <first_frame> R  K  G  M  D  H  I  H  I  Q  I  L  M  Q  S  L  R  E  F  Y  I  I  T  K  Q  E  V  Q  I  L  L  Q  L  G  I  L  Q  V  L  V  I  S  K  H  Q  L  E  L  I  L  D  *  V  M  *  C  W  K  M  K  R  R  L  K  S  G  Q  H  K  W  S  L  E  F  R  L  L  L  I  L  F  L  M  V  E  M  I  L  K  E  S  D  L   : V  G  T  C  S  T  N  G  K  L  K  D  G  G  V  K  I  M  T  E  L  W  S  F  T  M  F  R  D  L  I  S  M  L  F  T  H  P  H  S  L  R  M  G :   E  I  Q  I  I  R  Q  G  R  D  L  Q  G  I  S  N  N  T  M  L  D  *  V  L  M  S  L  V  S  Q  R  A  V  G  Y  Q  E  R  Q  P  P  L  E  T  K  L  Q  F  L  *  V  M  L  V  I  W  S  Q  N  G  *  N  K  M  N  L  E  C </first_frame>
            <second_frame>  E  R  A  W  T  I  S  I  S  R  F  *  C  N  L  *  G  S  F  I  *  L  P  N  R  K  F  K  F  Y  S  S  L  G  F  Y  K  Y  W  S  F  P  N  T  N  *  N  *  S  *  I  K  *  C  D  V  G  R  *  R  G  G  *  R  V  D  S  T  S  G  A  W  N  S  D  Y  F  *  F  S  S  S  W  W  K  *  S  *  K  N  Q  I  *  :  S  G  R  V  Q  Q  M  A  S  S  K  M  V  G  *  K  L  *  Q  N  Y  G  A  L  Q  C  S  E  I  *  *  V  C  S  S  H  T  L  T  V  *  G  W   : E  R  F  K  L  F  V  K  A  G  I  C  K  G  F  P  T  I  Q  C  W  I  R  C  S  C  P  *  F  P  K  G  Q  W  G  I  K  N  D  N  L  L  *  R  R  S  F  S  F  C  K  *  C  *  *  Y  G  V  R  M  D  R  T  R  *  T  W  S   </second_frame>
            <third_frame>   K  G  H  G  P  Y  P  Y  P  D  F  D  A  I  S  K  G  V  L  Y  N  Y  Q  T  G  S  S  N  S  T  P  A  W  D  F  T  S  T  G  H  F  Q  T  P  T  R  T  D  P  R  L  S  D  V  M  L  E  D  E  E  E  A  K  E  W  T  A  Q  V  E  P  G  I  Q  I  T  F  D  S  L  P  H  G  G  N  D  L  K  R  I  R  F  S :   R  D  V  F  N  K  W  Q  A  Q  R  W  W  G  E  N  Y  D  R  I  M  E  L  Y  N  V  Q  R  F  N  K  Y  A  L  H  T  P  S  Q  S  E  D  G  :  R  D  S  N  Y  S  S  R  P  G  S  A  R  D  F  Q  Q  Y  N  A  G  L  G  A  H  V  P  S  F  P  K  G  S  G  V  S  R  T  T  T  S  S  R  D  E  A  S  V  S  V  S  N  A  S  D  M  E  S  E  W  I  E  Q  D  E  P  G  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100201" stop="100478"/>
                    <exon start="100590" stop="100719"/>
                    <exon start="100798" stop="101001"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGHGPYPYPDFDAISKGVLYNYQTGSSNSTPAWDFTSTGHFQTPTRTDPRLSDVMLEDEEEAKEWTAQVEPGIQITFDSLPHGGNDLKRIRFSRDVFNKWQAQRWWGENYDRIMELYNVQRFNKYALHTPSQSEDGRDSNYSSRPGSARDFQQYNAGLGAHVPSFPKGSGVSRTTTSSRDEASVSVSNASDMESEWIEQDEPGV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="106265" PGL_stop="107520"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106265" e_stop="107520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="106265" e_stop="107520" e_length="1256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106265" stop="107520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTTCTATAAATTCTCCTCTTCGTTCTTCTCCAAATATCATCTAGGGTTAGCTCCCAATTCTCCAGTCGCCATCGATTCAGTGGCCGCCATTGATACCATACCGCCGGTATTGTATAATTTGCTTAGTTTTAGTTTTCATATAGTAACTGTATTCTGTTTACTTTGCACTTCGCAATCATATAAGCTTCGCTAAATTCTCAAGTTAGTGCAGTCTTACAGCGTTAGTGCGTATAGGAAAAGCTGAATTTATCAGCGGCGGCCAGACAACCGTTGAGATGAATCCACAGATGGGTTTCGTTTTTGCTCCTGTCTACTAATTTCTTCTCACATTTTGCTGTTATTATATCTGTAGTTTTTTCAATTTGATGGTACAATTTGGAAATTGGGGCGAGTTATCAGTACTCGTATAACCCAAAGTATCTATATCATCAAGCTGTCTTTGTTGATGTAGCATTTGATTTTTTCTGTTTTCCTTCGGGAAGATGGGAGGATTCTATGTTGTAATCCGAAGATGGAGATCTCATATCCTATAGCCTTGTAGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGAAATACATTCAATTCAACTTAATTTTCATATCTTCATGCCTGTGATGAAATCTATTATAAAGAACACCATCTTTCGGGACTGAATGGCCCTTAAGGCCTTGTTGTCAATTCTGCAATTCTGAGGCTTTTATATGTTATAGTTTTGCTTTGCTTGAACTATGTGTAAACTGCTTTGTGATTTGAGATGGAAGTGATGAATATTTCCCCAGATGATCGAAGCTGAAATTACTGAGCGCTTTTCATGTATTTTCTCCTTATTAGGAGAAAATCCAAGCCAGATATTCTGATCCATCTCCAATTTTCTTCCATTTTTTCTCTTAAATCTTCAAAAAAATTGATTATTCAGTGTTTATTATGATTTTTCTGATTGATTTGAATATGGATTTGATGAATATTTCCCCAGATGATCGAAGCTGAAATAACTGAGCGCTTTATAATGCATTTTCTCCTCTTTAGGGGAAAATCCAAGCCAGATATTCTGATCCATATGTATTAATTTCAATTGTTTTCTATGTTTTGATTGTTCATTTGTTAGTTGAATTTGTTGTATGGAGTTGATGATTATTTCCCCAGATGATCGAAGCTGAAATTACTGAGCGCTTTTTCATGTATTTTCTCCGTTCAGGGGAAAATTCAAGCCAGATATTCTGATCCATATACTTACAATATGATT</gDNA_template>
            <first_frame> S  F  Y  K  F  S  S  S  F  F  S  K  Y  H  L  G  L  A  P  N  S  P  V  A  I  D  S  V  A  A  I  D  T  I  P  P  V  L  Y  N  L  L  S  F  S  F  H  I  V  T  V  F  C  L  L  C  T  S  Q  S  Y  K  L  R  *  I  L  K  L  V  Q  S  Y  S  V  S  A  Y  R  K  S  *  I  Y  Q  R  R  P  D  N  R  *  D  E  S  T  D  G  F  R  F  C  S  C  L  L  I  S  S  H  I  L  L  L  L  Y  L  *  F  F  Q  F  D  G  T  I  W  K  L  G  R  V  I  S  T  R  I  T  Q  S  I  Y  I  I  K  L  S  L  L  M  *  H  L  I  F  S  V  F  L  R  E  D  G  R  I  L  C  C  N  P  K  M  E  I  S  Y  P  I  A  L  *  S  G  I  S  A  I  T  I  W  D  *  P  *  E  I  H  S  I  Q  L  N  F  H  I  F  M  P  V  M  K  S  I  I  K  N  T  I  F  R  D  *  M  A  L  K  A  L  L  S  I  L  Q  F  *  G  F  Y  M  L  *  F  C  F  A  *  T  M  C  K  L  L  C  D  L  R  W  K  *  *  I  F  P  Q  M  I  E  A  E  I  T  E  R  F  S  C  I  F  S  L  L  G  E  N  P  S  Q  I  F  *  S  I  S  N  F  L  P  F  F  L  L  N  L  Q  K  N  *  L  F  S  V  Y  Y  D  F  S  D  *  F  E  Y  G  F  D  E  Y  F  P  R  *  S  K  L  K  *  L  S  A  L  *  C  I  F  S  S  L  G  E  N  P  S  Q  I  F  *  S  I  C  I  N  F  N  C  F  L  C  F  D  C  S  F  V  S  *  I  C  C  M  E  L  M  I  I  S  P  D  D  R  S  *  N  Y  *  A  L  F  H  V  F  S  P  F  R  G  K  F  K  P  D  I  L  I  H  I  L  T  I  *   </first_frame>
            <second_frame>  P  S  I  N  S  P  L  R  S  S  P  N  I  I  *  G  *  L  P  I  L  Q  S  P  S  I  Q  W  P  P  L  I  P  Y  R  R  Y  C  I  I  C  L  V  L  V  F  I  *  *  L  Y  S  V  Y  F  A  L  R  N  H  I  S  F  A  K  F  S  S  *  C  S  L  T  A  L  V  R  I  G  K  A  E  F  I  S  G  G  Q  T  T  V  E  M  N  P  Q  M  G  F  V  F  A  P  V  Y  *  F  L  L  T  F  C  C  Y  Y  I  C  S  F  F  N  L  M  V  Q  F  G  N  W  G  E  L  S  V  L  V  *  P  K  V  S  I  S  S  S  C  L  C  *  C  S  I  *  F  F  L  F  S  F  G  K  M  G  G  F  Y  V  V  I  R  R  W  R  S  H  I  L  *  P  C  R  A  E  S  L  L  L  L  F  G  I  D  H  E  K  Y  I  Q  F  N  L  I  F  I  S  S  C  L  *  *  N  L  L  *  R  T  P  S  F  G  T  E  W  P  L  R  P  C  C  Q  F  C  N  S  E  A  F  I  C  Y  S  F  A  L  L  E  L  C  V  N  C  F  V  I  *  D  G  S  D  E  Y  F  P  R  *  S  K  L  K  L  L  S  A  F  H  V  F  S  P  Y  *  E  K  I  Q  A  R  Y  S  D  P  S  P  I  F  F  H  F  F  S  *  I  F  K  K  I  D  Y  S  V  F  I  M  I  F  L  I  D  L  N  M  D  L  M  N  I  S  P  D  D  R  S  *  N  N  *  A  L  Y  N  A  F  S  P  L  *  G  K  I  Q  A  R  Y  S  D  P  Y  V  L  I  S  I  V  F  Y  V  L  I  V  H  L  L  V  E  F  V  V  W  S  *  *  L  F  P  Q  M  I  E  A  E  I  T  E  R  F  F  M  Y  F  L  R  S  G  E  N  S  S  Q  I  F  *  S  I  Y  L  Q  Y  D  </second_frame>
            <third_frame>   L  L  *  I  L  L  F  V  L  L  Q  I  S  S  R  V  S  S  Q  F  S  S  R  H  R  F  S  G  R  H  *  Y  H  T  A  G  I  V  *  F  A  *  F  *  F  S  Y  S  N  C  I  L  F  T  L  H  F  A  I  I  *  A  S  L  N  S  Q  V  S  A  V  L  Q  R  *  C  V  *  E  K  L  N  L  S  A  A  A  R  Q  P  L  R  *  I  H  R  W  V  S  F  L  L  L  S  T  N  F  F  S  H  F  A  V  I  I  S  V  V  F  S  I  *  W  Y  N  L  E  I  G  A  S  Y  Q  Y  S  Y  N  P  K  Y  L  Y  H  Q  A  V  F  V  D  V  A  F  D  F  F  C  F  P  S  G  R  W  E  D  S  M  L  *  S  E  D  G  D  L  I  S  Y  S  L  V  E  R  N  L  C  Y  Y  Y  L  G  L  T  M  R  N  T  F  N  S  T  *  F  S  Y  L  H  A  C  D  E  I  Y  Y  K  E  H  H  L  S  G  L  N  G  P  *  G  L  V  V  N  S  A  I  L  R  L  L  Y  V  I  V  L  L  C  L  N  Y  V  *  T  A  L  *  F  E  M  E  V  M  N  I  S  P  D  D  R  S  *  N  Y  *  A  L  F  M  Y  F  L  L  I  R  R  K  S  K  P  D  I  L  I  H  L  Q  F  S  S  I  F  S  L  K  S  S  K  K  L  I  I  Q  C  L  L  *  F  F  *  L  I  *  I  W  I  *  *  I  F  P  Q  M  I  E  A  E  I  T  E  R  F  I  M  H  F  L  L  F  R  G  K  S  K  P  D  I  L  I  H  M  Y  *  F  Q  L  F  S  M  F  *  L  F  I  C  *  L  N  L  L  Y  G  V  D  D  Y  F  P  R  *  S  K  L  K  L  L  S  A  F  S  C  I  F  S  V  Q  G  K  I  Q  A  R  Y  S  D  P  Y  T  Y  N  M  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106265" stop="106459"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFYKFSSSFFSKYHLGLAPNSPVAIDSVAAIDTIPPVLYNLLSFSFHIVTVFCLLCTSQSYKLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="108405" PGL_stop="109840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108405" e_stop="109840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108405" e_stop="109840" e_length="1436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108405" stop="109033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109005" stop="109840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319793" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTGAGACCTGAATTTATTGATTTTGATGTCAACTACAAGCAATTCTTCTGAGGATTTTCCCCATTGTTTGAATACTGTATTCTTTTTAACTTTTTATATCGATGTACAAATGTACTTAGAAAAACTTGATCATGAGGTTTTAGAGATGTCAATAGTTGGATCTTGCTATTATTTATGGATTCAGTCATTTGAGATAAATAAATGTCACTTTTTGTTTTATACTTTGATATTTCATTTTGATGGTAAGACTATTGATATTGGGGCGAGTTTTTTGGTACTCGTATAATCCGATGTATCCATATCATCATAGAATAAGCTGTCTTTGTTGATTTAGCACTTTGTTTTTTCTGTTTTCCTTTGGGAAGATTGAAGAATCCTGTGTTGTAATCCGAAGATGGCGATCTCATATCCTATAGCCTTGTGGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGATATACATTCAATTCAACTTAATTTTATATGCTTAGCTAATCTTTGATGAAATTTGATCTTTTTTTGTTTTTATGAACTATTATTGTTGAATTTTGTGTTTATGGATATGATGATTATTTCCCCAGATGATCGAAGTTGAAATTACTGAGCGCTTTTACTGTATTTTCTCCTTATTAGGAGAAAATCCAAGCCAGATATTCTGATCCATCACTTATGTTTTGCATTTATAGAGTTGAAATTTGTACATTTATGTCTTCCAGTGCTATTATTCCAATTTCTGTGTTTTTTTAAAACAATTTTTGATGAAATATATTGATAATTATGGTGTGTAAGGATGATGAAGAAATCATTCGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAATTGCTCTTATCTTCATTTGAATGTAGTACAAACATATTGACCTGTTGCTACGTGATAACCATCCTTGTAAATGGAAGAACAGTCGGCGACAATGCGAAGCAATTTCAGGGAGCAGAACAAGGTGGTTGAGGGAATTGTTGAAATTTTGGAACATCAACTTTTCTTCATGTTTTCAGTTATAGTATAGACATTTTGTGAACTATGTAATACTTGTTTAAACTAAATAATATGATGTGATGCTTCACAATACAATATACATATATTTCGATGGCTATCTAATGAAGTTCAAAATTTTTTATCCTATATCAAGAAGTGCATCGTCTCATAGTTCATATGTAGAGAAAGGTCTGTTTATATCTCATTTAAATCTTCAATAATTTGGTGATGGGAGATATGG</gDNA_template>
            <first_frame> L  *  D  L  N  L  L  I  L  M  S  T  T  S  N  S  S  E  D  F  P  H  C  L  N  T  V  F  F  L  T  F  Y  I  D  V  Q  M  Y  L  E  K  L  D  H  E  V  L  E  M  S  I  V  G  S  C  Y  Y  L  W  I  Q  S  F  E  I  N  K  C  H  F  L  F  Y  T  L  I  F  H  F  D  G  K  T  I  D  I  G  A  S  F  L  V  L  V  *  S  D  V  S  I  S  S  *  N  K  L  S  L  L  I  *  H  F  V  F  S  V  F  L  W  E  D  *  R  I  L  C  C  N  P  K  M  A  I  S  Y  P  I  A  L  W  S  G  I  S  A  I  T  I  W  D  *  P  *  D  I  H  S  I  Q  L  N  F  I  C  L  A  N  L  *  *  N  L  I  F  F  C  F  Y  E  L  L  L  L  N  F  V  F  M  D  M  M  I  I  S  P  D  D  R  S  *  N  Y  *  A  L  L  L  Y  F  L  L  I  R  R  K  S  K  P  D  I  L  I  H  H  L  C  F  A  F  I  E  L  K  F  V  H  L  C  L  P  V  L  L  F  Q  F  L  C  F  F  K  T  I  F  D  E  I  Y  *  *  L  W  C  V  R  M  M  K  K  S  F  G  F  P  L  M  F  L  M  *  L  L  Q  P  A  T  S  D  F  T  S  *  H  Y  L  F  L  F  Y  L  F  F  *  L  L  C  I  V  S  C  C  Y  *  Y  W  L  E  D  C  N  F  W  N  C  L  T  M  V  V  L  Y  S  T  Y  G  F  K  S  I  Y  M  N  Q  S  I  A  L  I  F  I  *  M  *  Y  K  H  I  D  L  L  L  R  D  N  H  P  C  K  W  K  N  S  R  R  Q  C  E  A  I  S  G  S  R  T  R  W  L  R  E  L  L  K  F  W  N  I  N  F  S  S  C  F  Q  L  *  Y  R  H  F  V  N  Y  V  I  L  V  *  T  K  *  Y  D  V  M  L  H  N  T  I  Y  I  Y  F  D  G  Y  L  M  K  F  K  I  F  Y  P  I  S  R  S  A  S  S  H  S  S  Y  V  E  K  G  L  F  I  S  H  L  N  L  Q  *  F  G  D  G  R  Y   </first_frame>
            <second_frame>  F  E  T  *  I  Y  *  F  *  C  Q  L  Q  A  I  L  L  R  I  F  P  I  V  *  I  L  Y  S  F  *  L  F  I  S  M  Y  K  C  T  *  K  N  L  I  M  R  F  *  R  C  Q  *  L  D  L  A  I  I  Y  G  F  S  H  L  R  *  I  N  V  T  F  C  F  I  L  *  Y  F  I  L  M  V  R  L  L  I  L  G  R  V  F  W  Y  S  Y  N  P  M  Y  P  Y  H  H  R  I  S  C  L  C  *  F  S  T  L  F  F  L  F  S  F  G  K  I  E  E  S  C  V  V  I  R  R  W  R  S  H  I  L  *  P  C  G  A  E  S  L  L  L  L  F  G  I  D  H  E  I  Y  I  Q  F  N  L  I  L  Y  A  *  L  I  F  D  E  I  *  S  F  F  V  F  M  N  Y  Y  C  *  I  L  C  L  W  I  *  *  L  F  P  Q  M  I  E  V  E  I  T  E  R  F  Y  C  I  F  S  L  L  G  E  N  P  S  Q  I  F  *  S  I  T  Y  V  L  H  L  *  S  *  N  L  Y  I  Y  V  F  Q  C  Y  Y  S  N  F  C  V  F  L  K  Q  F  L  M  K  Y  I  D  N  Y  G  V  *  G  *  *  R  N  H  S  D  S  H  *  C  F  *  C  D  Y  Y  N  Q  L  L  L  T  S  H  H  S  T  T  F  S  S  F  I  F  F  F  N  F  Y  V  L  F  L  V  V  T  D  I  G  L  K  I  V  I  F  G  I  V  *  Q  W  L  F  C  T  L  L  M  D  L  N  L  F  I  *  I  N  Q  L  L  L  S  S  F  E  C  S  T  N  I  L  T  C  C  Y  V  I  T  I  L  V  N  G  R  T  V  G  D  N  A  K  Q  F  Q  G  A  E  Q  G  G  *  G  N  C  *  N  F  G  T  S  T  F  L  H  V  F  S  Y  S  I  D  I  L  *  T  M  *  Y  L  F  K  L  N  N  M  M  *  C  F  T  I  Q  Y  T  Y  I  S  M  A  I  *  *  S  S  K  F  F  I  L  Y  Q  E  V  H  R  L  I  V  H  M  *  R  K  V  C  L  Y  L  I  *  I  F  N  N  L  V  M  G  D  M  </second_frame>
            <third_frame>   L  R  P  E  F  I  D  F  D  V  N  Y  K  Q  F  F  *  G  F  S  P  L  F  E  Y  C  I  L  F  N  F  L  Y  R  C  T  N  V  L  R  K  T  *  S  *  G  F  R  D  V  N  S  W  I  L  L  L  F  M  D  S  V  I  *  D  K  *  M  S  L  F  V  L  Y  F  D  I  S  F  *  W  *  D  Y  *  Y  W  G  E  F  F  G  T  R  I  I  R  C  I  H  I  I  I  E  *  A  V  F  V  D  L  A  L  C  F  F  C  F  P  L  G  R  L  K  N  P  V  L  *  S  E  D  G  D  L  I  S  Y  S  L  V  E  R  N  L  C  Y  Y  Y  L  G  L  T  M  R  Y  T  F  N  S  T  *  F  Y  M  L  S  *  S  L  M  K  F  D  L  F  L  F  L  *  T  I  I  V  E  F  C  V  Y  G  Y  D  D  Y  F  P  R  *  S  K  L  K  L  L  S  A  F  T  V  F  S  P  Y  *  E  K  I  Q  A  R  Y  S  D  P  S  L  M  F  C  I  Y  R  V  E  I  C  T  F  M  S  S  S  A  I  I  P  I  S  V  F  F  *  N  N  F  *  *  N  I  L  I  I  M  V  C  K  D  D  E  E  I  I  R  I  P  T  D  V  F  N  V  I  T  T  T  S  Y  F  *  L  H  I  I  A  L  P  F  P  L  L  S  F  F  L  T  F  M  Y  C  F  L  L  L  L  I  L  A  *  R  L  *  F  L  E  L  F  N  N  G  C  F  V  L  Y  L  W  I  *  I  Y  L  Y  E  S  I  N  C  S  Y  L  H  L  N  V  V  Q  T  Y  *  P  V  A  T  *  *  P  S  L  *  M  E  E  Q  S  A  T  M  R  S  N  F  R  E  Q  N  K  V  V  E  G  I  V  E  I  L  E  H  Q  L  F  F  M  F  S  V  I  V  *  T  F  C  E  L  C  N  T  C  L  N  *  I  I  *  C  D  A  S  Q  Y  N  I  H  I  F  R  W  L  S  N  E  V  Q  N  F  L  S  Y  I  K  K  C  I  V  S  *  F  I  C  R  E  R  S  V  Y  I  S  F  K  S  S  I  I  W  *  W  E  I  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108411" stop="108692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLNLLILMSTTSNSSEDFPHCLNTVFFLTFYIDVQMYLEKLDHEVLEMSIVGSCYYLWIQSFEINKCHFLFYTLIFHFDGKTIDIGASFLVLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="113100" PGL_stop="110571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113100" e_stop="113015"/>
            <exon e_start="111216" e_stop="110571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113100" e_stop="113015" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="113014" i_stop="111217" i_length="1798"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="111216" e_stop="110571" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113100" stop="113015"/>
              <exon start="111216" stop="110571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAATTGTGTTTCAACTCGCTGCTACGGAGCATTGAGCATTTGCTGCCGCCGGCTGTATCGCTCGCCGCCGTTCAATCCTTCCGAG : GATAGAGCCAACTTTGGCGACCTTGAAAAATAGGTAGCGCTGGGTGTTATTTTGAAGGGAAAAGATAAGCATTATGAGAACAACATTAGTGAGACAGAAGGGTATCAAGATTTATTGGAAATATTACAGTAGTCTTTGCCATCCCAAGGTGAATGAGACACGTTCTTCAACAAACTTGCGTTCATTTAGCAGCTCCAACAAATTCAGCGATTACTCTGATGAATCCGCTGAATCCAACTATCCTCCTCCTCCTGAGCCTATACCAAATAGGCCCTTACGAGCTGATTCCAGGAGGCCCTTCAATCCATCCCAAAGACAGCATCCAAGCAACAGAAGCAGCCCCAATCATTCTACAACTTTTAGAAGATCCAGTGAGAACAATGAAAGTCAAATGAAATCCCAGGATAGTGAAGATTTTCTGAAAAGATTTCAGCTTGGATTTGATCGTAAAGAGGAAAACCCAAACACAAACCCCAAAGCTGAAAGTAGAGACTGTCCTGTTTCAGAGGCACCTCCAGCTCCACCAGAAGATGCTGATGAGATATTCAAGAAAATGAAAGAAACTGGCTTAATACCTAATGCTGTAGCAATGCTTGATGGGCTCTGCAAGGACGGCTTGGTACAGGAAGCGATGAAGCTCTTTGGC</gDNA_template>
            <first_frame> R  I  V  F  Q  L  A  A  T  E  H  *  A  F  A  A  A  G  C  I  A  R  R  R  S  I  L  P  R :   I  E  P  T  L  A  T  L  K  N  R  *  R  W  V  L  F  *  R  E  K  I  S  I  M  R  T  T  L  V  R  Q  K  G  I  K  I  Y  W  K  Y  Y  S  S  L  C  H  P  K  V  N  E  T  R  S  S  T  N  L  R  S  F  S  S  S  N  K  F  S  D  Y  S  D  E  S  A  E  S  N  Y  P  P  P  P  E  P  I  P  N  R  P  L  R  A  D  S  R  R  P  F  N  P  S  Q  R  Q  H  P  S  N  R  S  S  P  N  H  S  T  T  F  R  R  S  S  E  N  N  E  S  Q  M  K  S  Q  D  S  E  D  F  L  K  R  F  Q  L  G  F  D  R  K  E  E  N  P  N  T  N  P  K  A  E  S  R  D  C  P  V  S  E  A  P  P  A  P  P  E  D  A  D  E  I  F  K  K  M  K  E  T  G  L  I  P  N  A  V  A  M  L  D  G  L  C  K  D  G  L  V  Q  E  A  M  K  L  F  G </first_frame>
            <second_frame>  E  L  C  F  N  S  L  L  R  S  I  E  H  L  L  P  P  A  V  S  L  A  A  V  Q  S  F  R   : G  *  S  Q  L  W  R  P  *  K  I  G  S  A  G  C  Y  F  E  G  K  R  *  A  L  *  E  Q  H  *  *  D  R  R  V  S  R  F  I  G  N  I  T  V  V  F  A  I  P  R  *  M  R  H  V  L  Q  Q  T  C  V  H  L  A  A  P  T  N  S  A  I  T  L  M  N  P  L  N  P  T  I  L  L  L  L  S  L  Y  Q  I  G  P  Y  E  L  I  P  G  G  P  S  I  H  P  K  D  S  I  Q  A  T  E  A  A  P  I  I  L  Q  L  L  E  D  P  V  R  T  M  K  V  K  *  N  P  R  I  V  K  I  F  *  K  D  F  S  L  D  L  I  V  K  R  K  T  Q  T  Q  T  P  K  L  K  V  E  T  V  L  F  Q  R  H  L  Q  L  H  Q  K  M  L  M  R  Y  S  R  K  *  K  K  L  A  *  Y  L  M  L  *  Q  C  L  M  G  S  A  R  T  A  W  Y  R  K  R  *  S  S  L   </second_frame>
            <third_frame>   N  C  V  S  T  R  C  Y  G  A  L  S  I  C  C  R  R  L  Y  R  S  P  P  F  N  P  S  E  :  D  R  A  N  F  G  D  L  E  K  *  V  A  L  G  V  I  L  K  G  K  D  K  H  Y  E  N  N  I  S  E  T  E  G  Y  Q  D  L  L  E  I  L  Q  *  S  L  P  S  Q  G  E  *  D  T  F  F  N  K  L  A  F  I  *  Q  L  Q  Q  I  Q  R  L  L  *  *  I  R  *  I  Q  L  S  S  S  S  *  A  Y  T  K  *  A  L  T  S  *  F  Q  E  A  L  Q  S  I  P  K  T  A  S  K  Q  Q  K  Q  P  Q  S  F  Y  N  F  *  K  I  Q  *  E  Q  *  K  S  N  E  I  P  G  *  *  R  F  S  E  K  I  S  A  W  I  *  S  *  R  G  K  P  K  H  K  P  Q  S  *  K  *  R  L  S  C  F  R  G  T  S  S  S  T  R  R  C  *  *  D  I  Q  E  N  E  R  N  W  L  N  T  *  C  C  S  N  A  *  W  A  L  Q  G  R  L  G  T  G  S  D  E  A  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111161" stop="110571"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REKISIMRTTLVRQKGIKIYWKYYSSLCHPKVNETRSSTNLRSFSSSNKFSDYSDESAESNYPPPPEPIPNRPLRADSRRPFNPSQRQHPSNRSSPNHSTTFRRSSENNESQMKSQDSEDFLKRFQLGFDRKEENPNTNPKAESRDCPVSEAPPAPPEDADEIFKKMKETGLIPNAVAMLDGLCKDGLVQEAMKLFG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="114036" PGL_stop="116743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114036" e_stop="114063"/>
            <exon e_start="115242" e_stop="115363"/>
            <exon e_start="115466" e_stop="115599"/>
            <exon e_start="115980" e_stop="116138"/>
            <exon e_start="116239" e_stop="116743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.772" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.578" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114036" e_stop="114063" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.772">
            <gDNA_intron_boundary i_start="114064" i_stop="115241" i_length="1178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115242" e_stop="115363" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.741">
            <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115466" e_stop="115599" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115980" e_stop="116138" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.578">
            <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="116239" e_stop="116743" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114036" stop="114063"/>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312445" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACTTCAGCTTTGCTCGATTTCTCG : CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG : CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA : GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG : GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTTATATTCTTGCTCTTGATGTGTTTGATTTGTTCTCTGCATCGATATTTATCCAACGAGTTGTGTTATATACGATCTGTAGTTGTTTTAG</gDNA_template>
            <first_frame> K  N  F  S  F  A  R  F  L   : A  Y  T  G  K  P  *  S  I  T  M  L  S  P  T  A  T  L  R  S  I  G  K  T  M  *  G  H  G  L  T  N  L  L  A  K  Q  G  D  V  L  :  L  G  R  R  K  L  Q  Q  S  S  L  G  Q  Q  Q  D  H  S  D  L  L  F  M  D  K  H  *  N  T  T  *  K  S  E  L  A  G  D  S  L  *  K  S  *  K :   Q  L  V  S  P  K  N  L  L  Q  L  S  A  L  L  W  I  T  G  A  G  T  D  P  L  K  V  S  R  P  T  S  R  D  S  R  H  T  K  L  S  S  L  S  S  Q  G  M  L  R  K  S  R :   L  V  I  L  V  L  R  N  L  L  M  P  P  K  S  R  V  L  T  C  L  L  L  E  I  S  Q  L  S  S  L  *  R  S  Q  M  K  *  N  H  S  K  L  M  A  S  C  V  L  S  V  P  M  L  V  I  L  V  L  G  *  R  E  Q  L  K  L  R  R  K  R  R  N  K  T  F  L  M  S  Y  S  P  C  T  L  A  L  L  N  F  F  C  T  S  L  N  D  E  L  F  L  S  T  I  I  S  C  N  F  F  F  R  T  R  R  W  S  L  L  R  R  V  K  T  I  T  P  I  V  V  Y  P  *  N  V  R  F  W  L  Y  S  C  S  *  C  V  *  F  V  L  C  I  D  I  Y  P  T  S  C  V  I  Y  D  L  *  L  F  * </first_frame>
            <second_frame>  K  T  S  A  L  L  D  F  S  :  H  T  Q  V  N  H  E  A  *  Q  C  Y  P  Q  R  P  L  *  E  A  L  A  K  L  C  E  D  M  V  *  P  T  C  S  Q  N  K  E  T  C  C :   *  A  E  E  S  C  N  N  L  P  *  A  N  S  R  I  T  Q  T  Y  C  S  W  T  N  T  K  I  Q  H  E  S  Q  S  W  P  G  I  L  S  R  R  A  E   : S  S  W  Y  P  Q  K  T  C  S  N  Y  R  H  C  C  G  S  Q  A  Q  E  Q  I  P  *  R  S  P  D  Q  R  P  E  T  Q  D  I  Q  S  *  A  R  Y  L  P  K  A  C  *  E  S  Q   : G  W  *  F  *  C  *  G  T  C  *  C  H  P  S  P  G  S  L  L  A  Y  C  *  R  S  A  S  Y  R  A  C  E  D  H  R  *  N  E  I  I  Q  S  L  W  Q  A  A  Y  *  A  Y  Q  C  S  S  F  W  C  *  V  E  E  S  S  *  S  *  E  G  R  E  E  I  R  H  F  *  C  L  I  A  L  A  H  *  H  C  *  I  F  F  A  R  V  *  M  M  N  Y  F  *  V  L  L  F  H  V  I  F  F  S  V  L  V  D  G  V  C  Y  D  E  S  R  L  *  L  P  *  *  Y  I  L  K  T  *  G  F  G  Y  I  L  A  L  D  V  F  D  L  F  S  A  S  I  F  I  Q  R  V  V  L  Y  T  I  C  S  C  F   </second_frame>
            <third_frame>   K  L  Q  L  C  S  I  S  R :   I  H  R  *  T  M  K  H  N  N  V  I  P  N  G  H  F  K  K  H  W  Q  N  Y  V  R  T  W  F  N  Q  P  A  R  K  T  R  R  R  A   : A  R  Q  K  K  A  A  T  I  F  P  R  P  T  A  G  S  L  R  P  I  V  H  G  Q  T  L  K  Y  N  M  K  V  R  A  G  R  G  F  S  L  E  E  L  K  :  A  A  G  I  P  K  K  L  A  P  T  I  G  I  A  V  D  H  R  R  R  N  R  S  L  E  G  L  Q  T  N  V  Q  R  L  K  T  Y  K  A  K  L  V  I  F  P  R  H  A  K  K  V  K  :  A  G  D  S  S  A  E  E  L  A  N  A  T  Q  V  Q  G  P  Y  L  P  I  V  R  D  Q  P  A  I  E  L  V  K  I  T  D  E  M  K  S  F  K  A  Y  G  K  L  R  I  E  R  T  N  A  R  H  F  G  A  R  L  K  R  A  A  E  A  E  K  E  E  K  K  *  D  I  S  N  V  L  *  P  L  H  T  S  I  A  K  F  F  L  H  E  S  K  *  *  I  I  F  E  Y  Y  Y  F  M  *  F  F  F  P  Y  S  S  M  E  S  V  T  T  S  Q  D  Y  N  S  H  S  S  I  S  L  K  R  K  V  L  V  I  F  L  L  L  M  C  L  I  C  S  L  H  R  Y  L  S  N  E  L  C  Y  I  R  S  V  V  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115255" stop="115363"/>
                    <exon start="115466" stop="115599"/>
                    <exon start="115980" stop="116138"/>
                    <exon start="116239" stop="116460"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMKHNNVIPNGHFKKHWQNYVRTWFNQPARKTRRRAARQKKAATIFPRPTAGSLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVIFPRHAKKVKAGDSSAEELANATQVQGPYLPIVRDQPAIELVKITDEMKSFKAYGKLRIERTNARHFGARLKRAAEAEKEEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="123096" PGL_stop="118461"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123096" e_stop="122624"/>
            <exon e_start="121392" e_stop="121330"/>
            <exon e_start="121215" e_stop="121099"/>
            <exon e_start="119987" e_stop="119705"/>
            <exon e_start="118535" e_stop="118461"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.370" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.992" e_score="0.989"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123096" e_stop="122624" e_length="473"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="122623" i_stop="121393" i_length="1231"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121392" e_stop="121330" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.370">
            <gDNA_intron_boundary i_start="121329" i_stop="121216" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121215" e_stop="121099" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121098" i_stop="119988" i_length="1111"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="119987" e_stop="119705" e_length="283"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.992">
            <gDNA_intron_boundary i_start="119704" i_stop="118536" i_length="1169"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="118535" e_stop="118461" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123096" stop="122624"/>
              <exon start="121392" stop="121330"/>
              <exon start="121215" stop="121099"/>
              <exon start="119987" stop="119705"/>
              <exon start="118535" stop="118461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326875" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTGGATGTAGGTCACTTCAATTCGTTGAAATCTCAGCTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCATGAAAACAACTAGGTGACTGAAATTTTCTGTTAAAAATCATACTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATTGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAA : GAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGG : TATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGG : TACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGTTTGTGTTTCTGGGGCAATCTTAATGGCCATCTTCCGTGGACCTGTGGTGTTTGGAGACAGAAGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCGTGGAATTGGGTTTTGATGATTGGCACCTCGGTGTTTTATGCTTAATAGGAAACTGTATGTGCATGGCAGCATACTTAGCTATTCAG : GCTCCAGTTTTGGCAAAATACCCTGCAAGTATATCAGTGACGGCATATTCATACCTTTTTGGTTGCCTTTTAATG</gDNA_template>
            <first_frame> R  F  G  C  R  S  L  Q  F  V  E  I  S  A  K  F  L  I  L  N  Q  L  A  K  T  P  I  H  E  N  N  *  V  T  E  I  F  C  *  K  S  Y  F  L  F  I  L  *  L  N  Y  Q  E  S  *  N  P  I  S  P  T  I  T  I  F  H  R  F  Y  H  H  S  R  L  G  V  *  R  G  G  G  G  G  V  D  C  D  E  M  I  K  M  A  A  V  S  V  G  N  G  N  E  V  W  R  A  H  G  T  M  A  M  I  Q  L  L  Y  G  G  Y  H  V  I  T  K  V  A  L  N  V  G  M  N  Q  I  V  F  C  L  Y  R  D  L  L  A  L  S  I  L  A  P  V  A  Y  V  R  E  K :   R  S  R  I  P  L  N  R  R  L  L  L  S  F  F  F  L  G  L  T  G :   I  F  G  N  Q  L  L  F  L  I  G  L  G  Y  T  N  P  T  Y  A  A  A  V  Q  P  A  I  P  V  F  T  F  I  F  A  V  L  M  G :   T  E  T  V  K  L  F  T  V  E  G  Q  A  K  V  G  G  T  I  V  C  V  S  G  A  I  L  M  A  I  F  R  G  P  V  V  F  G  D  R  S  S  E  F  I  H  S  D  I  S  A  K  G  Q  P  E  P  T  G  W  L  M  S  S  F  V  E  L  G  F  D  D  W  H  L  G  V  L  C  L  I  G  N  C  M  C  M  A  A  Y  L  A  I  Q  :  A  P  V  L  A  K  Y  P  A  S  I  S  V  T  A  Y  S  Y  L  F  G  C  L  L  M </first_frame>
            <second_frame>  D  L  D  V  G  H  F  N  S  L  K  S  Q  L  N  S  *  F  *  T  N  *  R  K  P  Q  F  M  K  T  T  R  *  L  K  F  S  V  K  N  H  T  F  C  S  F  Y  S  L  I  I  K  N  L  E  T  P  S  H  Q  P  S  L  F  S  T  D  F  I  I  T  V  V  *  G  Y  K  G  V  V  G  V  G  W  I  V  M  K  *  *  K  W  Q  L  Y  Q  W  E  M  G  M  R  Y  G  E  L  M  E  Q  W  R  *  Y  S  F  C  M  V  D  T  M  *  L  Q  K  W  H  S  M  W  E  *  I  K  L  C  S  V  C  I  G  I  F  L  L  Y  L  F  L  H  Q  L  P  M  F  A  K   : R  G  R  G  F  L  *  I  G  G  F  C  Y  P  S  S  F  *  D  *  L   : V  F  L  G  T  N  F  C  F  L  L  V  L  V  T  Q  I  Q  H  M  L  Q  P  C  N  L  Q  Y  Q  S  S  H  S  Y  L  Q  Y  *  W   : V  Q  K  Q  *  S  F  L  L  W  K  V  K  Q  R  L  E  V  R  L  F  V  F  L  G  Q  S  *  W  P  S  S  V  D  L  W  C  L  E  T  E  A  Q  N  S  Y  T  V  I  *  V  L  R  V  S  Q  S  L  L  D  G  *  C  Q  V  S  W  N  W  V  L  M  I  G  T  S  V  F  Y  A  *  *  E  T  V  C  A  W  Q  H  T  *  L  F  R :   L  Q  F  W  Q  N  T  L  Q  V  Y  Q  *  R  H  I  H  T  F  L  V  A  F  *   </second_frame>
            <third_frame>   I  W  M  *  V  T  S  I  R  *  N  L  S  *  I  L  D  F  E  P  I  S  E  N  P  N  S  *  K  Q  L  G  D  *  N  F  L  L  K  I  I  L  S  V  H  S  I  A  *  L  S  R  I  L  K  P  H  L  T  N  H  H  Y  F  P  P  I  L  S  S  Q  S  F  R  G  I  K  G  W  W  G  W  G  G  L  *  *  N  D  K  N  G  S  C  I  S  G  K  W  E  *  G  M  E  S  S  W  N  N  G  D  D  T  A  F  V  W  W  I  P  C  D  Y  K  S  G  T  Q  C  G  N  E  S  N  C  V  L  F  V  *  G  S  S  C  S  I  Y  S  C  T  S  C  L  C  S  R  K  :  E  V  E  D  S  F  E  *  A  A  S  A  I  L  L  L  S  R  I  N  W  :  Y  F  W  E  P  T  F  V  S  Y  W  S  W  L  H  K  S  N  I  C  C  S  R  A  T  C  N  T  S  L  H  I  H  I  C  S  I  D  G  :  Y  R  N  S  E  A  F  Y  C  G  R  S  S  K  G  W  R  Y  D  C  L  C  F  W  G  N  L  N  G  H  L  P  W  T  C  G  V  W  R  Q  K  L  R  I  H  T  Q  *  Y  K  C  *  G  S  A  R  A  Y  W  M  V  N  V  K  F  R  G  I  G  F  *  *  L  A  P  R  C  F  M  L  N  R  K  L  Y  V  H  G  S  I  L  S  Y  S   : G  S  S  F  G  K  I  P  C  K  Y  I  S  D  G  I  F  I  P  F  W  L  P  F  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122865" stop="122624"/>
                    <exon start="121392" stop="121330"/>
                    <exon start="121215" stop="121099"/>
                    <exon start="119987" stop="119705"/>
                    <exon start="118535" stop="118461"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGGGGGVDCDEMIKMAAVSVGNGNEVWRAHGTMAMIQLLYGGYHVITKVALNVGMNQIVFCLYRDLLALSILAPVAYVREKRSRIPLNRRLLLSFFFLGLTGIFGNQLLFLIGLGYTNPTYAAAVQPAIPVFTFIFAVLMGTETVKLFTVEGQAKVGGTIVCVSGAILMAIFRGPVVFGDRSSEFIHSDISAKGQPEPTGWLMSSFVELGFDDWHLGVLCLIGNCMCMAAYLAIQAPVLAKYPASISVTAYSYLFGCLLM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="128260" PGL_stop="124132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128260" e_stop="128105"/>
            <exon e_start="127993" e_stop="127925"/>
            <exon e_start="127623" e_stop="127594"/>
            <exon e_start="126540" e_stop="126508"/>
            <exon e_start="125700" e_stop="125630"/>
            <exon e_start="124880" e_stop="124799"/>
            <exon e_start="124685" e_stop="124587"/>
            <exon e_start="124453" e_stop="124132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.794" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.894" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="128260" e_stop="128105" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.948">
            <gDNA_intron_boundary i_start="128104" i_stop="127994" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127993" e_stop="127925" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.794">
            <gDNA_intron_boundary i_start="127924" i_stop="127624" i_length="301"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="127623" e_stop="127594" e_length="30"/>
          </exon>
          <intron i_serial="3" don_prob="0.922" acc_prob="0.983">
            <gDNA_intron_boundary i_start="127593" i_stop="126541" i_length="1053"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126540" e_stop="126508" e_length="33"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="126507" i_stop="125701" i_length="807"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="125700" e_stop="125630" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.965">
            <gDNA_intron_boundary i_start="125629" i_stop="124881" i_length="749"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="124880" e_stop="124799" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.881">
            <gDNA_intron_boundary i_start="124798" i_stop="124686" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="124685" e_stop="124587" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.894">
            <gDNA_intron_boundary i_start="124586" i_stop="124454" i_length="133"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="124453" e_stop="124132" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128260" stop="128105"/>
              <exon start="127993" stop="127925"/>
              <exon start="127623" stop="127594"/>
              <exon start="126540" stop="126508"/>
              <exon start="125700" stop="125630"/>
              <exon start="124880" stop="124799"/>
              <exon start="124685" stop="124587"/>
              <exon start="124453" stop="124132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAG : GGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAG : GTGATTACTTCTTTGCATGAGGATATAGAG : GATGAATTTGAGTCTTTATGTGTGGAGACACAG : GCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAA : AAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACG : GCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAG : ATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACTCGAGAAGATGGATTAAACTAGAGACTATCAGAACTTCCATTTCAATGTGCCTGTGAAATCTAAAGTAAATTAGTTGCATTTGCTTTCAATTTCAAGCAAGTAAACAAGGTTGTTTATTTCTTGTTCACTTAAAATGCTTGTATATGACATTTGTATGTCATTAATTAAAGCACTAGAATAAGTGAAAGGACTACTAGTTTCATCTCTTTTATACAT</gDNA_template>
            <first_frame> N  L  F  Q  K  I  T  *  F  F  Q  S  P  A  I  A  E  E  M  E  K  T  K  E  E  I  A  G  T  R  Q  T  N  L  K  T  A  F  E  L  G  I  H  S  L  L  T  S  C  S  K  E  :  G  F  C  K  A  F  P  N  F  A  P  A  E  V  E  R  L  H  R  L  F  I  Q  :  V  I  T  S  L  H  E  D  I  E  :  D  E  F  E  S  L  C  V  E  T  Q  :  A  G  S  T  L  N  M  V  E  Q  L  V  E  E  Q  N  L  D  P  L  F  P  E  K :   S  N  V  E  E  V  R  H  F  L  S  E  A  K  Q  N  E  I  N  Y  L  T  T  M  L  E  T  :  A  E  E  Q  K  R  S  I  T  S  R  L  E  T  L  K  K  Q  R  H  D  F  S  D  A  A  A  T  D  I  V  N  K  :  I  R  T  G  N  Q  K  Y  N  T  N  N  N  I  G  F  H  N  *  Y  W  P  R  L  M  H  P  I  R  P  *  S  C  V  Y  S  R  R  W  I  K  L  E  T  I  R  T  S  I  S  M  C  L  *  N  L  K  *  I  S  C  I  C  F  Q  F  Q  A  S  K  Q  G  C  L  F  L  V  H  L  K  C  L  Y  M  T  F  V  C  H  *  L  K  H  *  N  K  *  K  D  Y  *  F  H  L  F  Y  T  </first_frame>
            <second_frame>  I  F  F  K  K  *  P  N  F  F  N  L  P  P  L  L  K  K  W  R  K  R  R  K  K  L  Q  E  Q  G  R  R  I  *  K  L  H  L  S  L  E  F  T  L  C  *  L  H  V  L  K  R :   D  F  V  K  L  S  L  I  L  L  Q  Q  K  L  N  A  F  I  G  C  S  F  R :   *  L  L  L  C  M  R  I  *  R :   M  N  L  S  L  Y  V  W  R  H  R :   Q  D  Q  L  S  T  W  W  S  S  L  W  K  N  K  T  W  T  L  C  F  Q  R   : K  A  M  L  K  K  S  G  T  S  Y  Q  K  Q  N  R  M  R  S  T  T  *  R  L  C  W  R  R :   Q  K  N  R  N  A  P  S  L  L  V  L  K  P  *  R  N  K  D  M  I  S  L  M  L  L  L  Q  T  L  S  I  R :   Y  E  L  G  I  R  S  T  I  R  T  T  I  L  A  S  I  I  D  T  G  L  V  *  C  I  L  S  A  L  S  P  A  S  T  R  E  D  G  L  N  *  R  L  S  E  L  P  F  Q  C  A  C  E  I  *  S  K  L  V  A  F  A  F  N  F  K  Q  V  N  K  V  V  Y  F  L  F  T  *  N  A  C  I  *  H  L  Y  V  I  N  *  S  T  R  I  S  E  R  T  T  S  F  I  S  F  I  H </second_frame>
            <third_frame>   S  F  S  K  N  N  L  I  F  S  I  S  R  H  C  *  R  N  G  E  N  E  G  R  N  C  R  N  K  A  D  E  F  E  N  C  I  *  A  W  N  S  L  F  V  N  F  M  F  *  R   : G  I  L  *  S  F  P  *  F  C  S  S  R  S  *  T  P  S  S  V  V  H  S   : G  D  Y  F  F  A  *  G  Y  R   : G  *  I  *  V  F  M  C  G  D  T   : G  R  I  N  S  Q  H  G  G  A  A  C  G  R  T  K  L  G  P  F  V  S  R  E  :  K  Q  C  *  R  S  Q  A  L  P  I  R  S  K  T  E  *  D  Q  L  L  D  D  Y  V  G  D   : G  R  R  T  E  T  L  H  H  F  S  S  *  N  P  E  E  T  K  T  *  F  L  *  C  C  C  Y  R  H  C  Q  *   : D  T  N  W  E  S  E  V  Q  Y  E  Q  Q  Y  W  L  P  *  L  I  L  A  S  S  D  A  S  Y  P  P  L  V  L  R  L  L  E  K  M  D  *  T  R  D  Y  Q  N  F  H  F  N  V  P  V  K  S  K  V  N  *  L  H  L  L  S  I  S  S  K  *  T  R  L  F  I  S  C  S  L  K  M  L  V  Y  D  I  C  M  S  L  I  K  A  L  E  *  V  K  G  L  L  V  S  S  L  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128236" stop="128105"/>
                    <exon start="127993" stop="127925"/>
                    <exon start="127623" stop="127594"/>
                    <exon start="126540" stop="126508"/>
                    <exon start="125700" stop="125630"/>
                    <exon start="124880" stop="124799"/>
                    <exon start="124685" stop="124587"/>
                    <exon start="124453" stop="124397"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFQSPAIAEEMEKTKEEIAGTRQTNLKTAFELGIHSLLTSCSKEGFCKAFPNFAPAEVERLHRLFIQVITSLHEDIEDEFESLCVETQAGSTLNMVEQLVEEQNLDPLFPEKSNVEEVRHFLSEAKQNEINYLTTMLETAEEQKRSITSRLETLKKQRHDFSDAAATDIVNKIRTGNQKYNTNNNIGFHN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 43 chains have been computed
$ 
$ memory statistics:
$ 116136 bytes spliced alignments in total
$ 25 spliced alignments have been stored
$ 4645 bytes was the average size of a spliced alignment
$ 28792 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1515 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 47 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-10 20:57:55
-->
