<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-18 02:31:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0183M06-QT1Rd/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-2oc2FT/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2oc2FT/sgn_marker_seqs" ref_id="SGN-M6499-2" ref_strand="+" ref_description="SGN-M6499-2 C2_At1g04690-2 [cosii_markers]">
      <seq>taatctacacaccaaagaaacttaaactctatcacaaattctcttaaaaagaccaatctttttccccttttcttgattcttgatctccctcaaaaaatgcaaatgcaatacaagaatttaggcagatcaggtctaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatccccttttgctttgccatatttgaagacacttatgagagttggtgttttttctgaaccaaaaaacctttaatgatggtgaattttctacttttctttaagtggatgaatgattatattggcttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-QT1Rd/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11406" stop="6259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11106" g_stop="10441" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="810" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="811" r_stop="975" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6884" g_stop="6559" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="976" r_stop="1301" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1302" polyA_stop="1342"/>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-M6499-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1301</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6499-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11106" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTACACACCAAAGAAACTTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</genome_strand>
        <mrna_strand>TAATCTACACACCAAAGAAACTTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2oc2FT/sgn_marker_seqs" ref_id="SGN-M6499" ref_strand="+" ref_description="SGN-M6499 C2_At1g04690 [cosii_markers]">
      <seq>caaagattggatcttgttggtcctattgttgagcagcctgagtataacttgttgtctaggcacaaggtcgaatctgagtacctccctctgtatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggtgttctgaccggaaaatatagtgcagggaacattccagcagacagccgatttgctctggaaaactacaagaatctcgctagcagatctttggtggatgatgtgttgaggaaggtaaatggattgaaaccaattgctgaagaactaggtgtaccgctgcctcaactggcaattgcttggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagaaaacatgaaagctatcaatgtcattccaatgttaacacctgccgtgatggagaagattgaacctgttgtccaaagcaaaccaaagcgccaggattcatataggtagacaaatcttcgatcccattggtagttccgaagagcactgttattcagacttggaggtttttcctcattatgtatttgcactcccttttccttgttatatgtgaagaccagagttggtgttgtttgtgaaccaatcttcacattggtgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-QT1Rd/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10806" stop="6341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10506" g_stop="10441" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="210" r_length="144" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="0.86"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="375" r_length="165" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6884" g_stop="6679" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="577" r_length="202" r_score="0.859"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-M6499" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10506" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTT</genome_strand>
        <mrna_strand>CAAAGATTGGATCTTGTTGGTCCTATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAATCTGAGTACCTCCCTCTGTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGTGTTCTGACCGGAAAATATAGTGCAGGGAACATTCCAGCAGACAGCCGATTTGCTCTGGAAAACTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCGCTAGCAGATCTTTGGTGGATGATGTGTTGAGGAAGGTAAATGGATTGAAACCAATTGCTGAAGAACTAGGTGTACCGCTGCCTCAACTGGCAATTGCTTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAAAACATGAAAGCTATCAATGTCATTCCAATGTTAACACCTGCCGTGATGGAGAAGATTGAACCTGTTGTCCAAAGCAAACCAAAGCGCCAGGATTCATATAGGTAGACAAATCTTCGA-TCCCATTGGTAGTTCCGAAGAGCACTGTTATTC-AGACT-TG-GAGGTTTTTCCTCATTATGTATTTGCACTCCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2oc2FT/sgn_marker_seqs" ref_id="SGN-M6499-3" ref_strand="+" ref_description="SGN-M6499-3 C2_At1g04690-3 [cosii_markers]">
      <seq>gtggaaacagctaatctacacaccaaaaacacttaaactccatcacaaattcttaaaaaaccaatctttttccccttttcttgattcttgatctccctcaaaaaatgcaaatgcaatacaagaatttaggcagatcaggcctaaaggtatcccagctctcttatggagcatgggttacctttggaaatcaacttgatgtcaaagaagcaaaaacccttttacaatgttgtcgtgaccatggtgtcaatttctttgacaatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcagacattgttgtgtctacaaagattttttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcctattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctgtatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgattttcactggaaaattacaagaatctcgccagcagatctttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccacccaaagagttatccaaatcaagagaaacatgaaagctatcaaatgtgattccaattgttaacacctgctgtgatgggaaagattgaagctattgttcaaagcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-QT1Rd/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11417" stop="6497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11117" g_stop="10441" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="818" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="985" r_length="167" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.991" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6884" g_stop="6797" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="986" r_stop="1076" r_length="91" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-M6499-3" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>1074</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6499-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11117" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTAAACAGCTAATCTACACACCAAAGAAACTTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCA-CCAAAGAG-TATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAA-CATGAAAGCTATC-AATGTGATTCCAA-TGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAAC</genome_strand>
        <mrna_strand>GTGGAAACAGCTAATCTACACACCAAAAACACTTAAACTCCATCACAAA-T-TCTTAAAAA-ACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGCCTAAAGGTATCCCAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTCAAAGAAGCAAAAACCCTTTTACAATGTTGTCGTGACCATGGTGTCAATTTCTTTGACAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCAGACATTGTTGTGTCTACAAAGATTTTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCTATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTGTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTTCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCGCCAGCAGATCTTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCCAAAGAGTTATCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAAGAGAAACATGAAAGCTATCAAATGTGATTCCAATTGTTAACACCTGCTGTGATGGGAAAGATTGAAGCTATTGTTCAAAGCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2oc2FT/sgn_marker_seqs" ref_id="SGN-M1595" ref_strand="+" ref_description="SGN-M1595 T0770 [cos_markers]">
      <seq>ttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-QT1Rd/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11198" stop="8392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10898" g_stop="10441" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8692" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="596" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-M1595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10898" e_stop="10441"/>
          <exon e_start="8829" e_stop="8692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAAT</genome_strand>
        <mrna_strand>TTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11117" PGL_stop="6559"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11117" e_stop="10441"/>
            <exon e_start="8829" e_stop="8686"/>
            <exon e_start="7860" e_stop="7696"/>
            <exon e_start="6884" e_stop="6559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11117" e_stop="10441" e_length="677"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8829" e_stop="8686" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.935" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7860" e_stop="7696" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6884" e_stop="6559" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11117" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6499-3" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11106" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6499-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10898" stop="10441"/>
              <exon start="8829" stop="8692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10506" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGTAAACAGCTAATCTACACACCAAAGAAACTTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG : GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG : AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG : ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</gDNA_template>
            <first_frame> V  *  T  A  N  L  H  T  K  E  T  *  T  L  S  Q  I  L  L  K  R  P  I  F  F  P  F  S  *  F  L  I  S  L  K  K  C  K  C  N  T  R  I  *  A  D  Q  V  *  R  Y  H  S  S  L  M  E  H  G  L  P  L  E  I  N  L  M  L  K  K  Q  K  P  F  Y  S  V  V  V  T  M  V  S  I  S  L  I  M  L  R  F  M  L  M  A  E  Q  K  K  S  W  V  K  R  F  V  N  L  G  G  K  D  R  T  L  L  C  Q  Q  R  Y  F  G  V  V  L  V  Q  M  I  K  G  F  Q  E  N  I  *  L  K  E  Q  K  L  H  *  R  D  L  I  W  I  M  *  I  *  S  I  V  I  G  L  I  Q  V  H  L  L  K  K  L  L  G  L  *  T  M  *  L  I  K  G  G  L  F  I  G  V  Q  V  N  G  Q  L  S  R  L  L  K  H  G  G  L  L  K  D  W  I  L  L  V  P  L  L  S  S  L  S  I  T  C  C  L  G  I  R :   L  N  L  S  T  S  L  S  I  A  T  M  E  L  V  L  P  H  G  V  L  S  L  Q  A  F  *  L  E  N  I  P  Q  G  T  F  H  Q  T  V  D  L  H  W  K  I  T  R :   I  L  P  A  D  P  W  W  M  M  C  *  G  K  *  M  D  *  N  Q  L  L  R  N  *  V  Y  L  C  L  N  W  Q  L  P  G  V  L  Q  I  L  M  S  H  L  L  L  L  V  P  P  K  S  I  R :   F  K  R  T  *  K  L  S  M  *  F  Q  C  *  H  L  L  *  W  R  R  L  K  L  L  F  K  A  N  R  S  A  K  I  H  I  G  R  Q  I  C  E  I  H  *  *  F  K  R  A  V  L  F  K  T  Q  F  V  F  S  S  L  C  I  C  I  P  F  C  F  A  I  F  E  D  T  Y  E  S  W  C  F  F  *  T  K  K  P  L  M  M  V  N  F  L  L  F  F  K  W  M  N  D  Y  I  G  F  *  </first_frame>
            <second_frame>  C  K  Q  L  I  Y  T  P  K  K  L  K  L  Y  H  K  F  S  *  K  D  Q  S  F  S  P  F  L  D  S  *  S  P  S  K  N  A  N  A  I  Q  E  F  R  Q  I  R  S  K  G  I  T  A  L  L  W  S  M  G  Y  L  W  K  S  T  *  C  *  R  S  K  N  P  F  T  V  L  S  *  P  W  C  Q  F  L  *  *  C  *  G  L  C  *  W  Q  S  R  R  N  H  G  S  S  D  S  *  T  W  V  E  K  I  G  H  C  C  V  N  K  D  I  L  G  W  F  W  S  K  *  *  R  A  F  K  K  T  Y  N  *  R  N  K  S  F  I  E  E  T  *  Y  G  L  C  R  S  D  L  L  S  *  A  *  Y  K  Y  T  Y  *  R  N  C  *  G  Y  E  L  C  D  *  *  R  V  G  F  L  L  G  Y  K  *  M  V  S  S  A  D  Y  *  S  M  G  G  C  S  K  I  G  S  C  W  S  H  C  *  A  A  *  V  *  L  V  V  *  A  *   : G  *  I  *  V  P  P  S  L  *  Q  L  W  N  W  S  Y  H  M  E  S  S  R  F  R  R  S  D  W  K  I  Y  L  R  E  H  S  T  R  Q  S  I  C  T  G  K  L  Q   : E  S  C  Q  Q  I  L  G  G  *  C  A  E  E  S  K  W  I  E  T  N  C  *  G  T  R  C  T  S  A  S  T  G  N  C  L  V  C  C  K  S  *  C  L  I  C  Y  Y  W  C  H  Q  R  V  S   : D  S  R  E  H  E  S  Y  Q  C  D  S  N  V  N  T  C  C  D  G  E  D  *  S  Y  C  S  K  Q  T  E  A  P  R  F  I  *  V  D  K  F  V  R  S  I  S  S  S  K  E  Q  C  C  S  R  L  S  L  F  F  H  H  Y  V  F  A  S  P  F  A  L  P  Y  L  K  T  L  M  R  V  G  V  F  S  E  P  K  N  L  *  *  W  *  I  F  Y  F  S  L  S  G  *  M  I  I  L  A  F  E </second_frame>
            <third_frame>   V  N  S  *  S  T  H  Q  R  N  L  N  S  I  T  N  S  L  K  K  T  N  L  F  P  L  F  L  I  L  D  L  P  Q  K  M  Q  M  Q  Y  K  N  L  G  R  S  G  L  K  V  S  Q  L  S  Y  G  A  W  V  T  F  G  N  Q  L  D  V  K  E  A  K  T  L  L  Q  C  C  R  D  H  G  V  N  F  F  D  N  A  E  V  Y  A  N  G  R  A  E  E  I  M  G  Q  A  I  R  E  L  G  W  K  R  S  D  I  V  V  S  T  K  I  F  W  G  G  S  G  P  N  D  K  G  L  S  R  K  H  I  I  E  G  T  K  A  S  L  K  R  L  D  M  D  Y  V  D  L  I  Y  C  H  R  P  D  T  S  T  P  I  E  E  T  V  R  A  M  N  Y  V  I  D  K  G  W  A  F  Y  W  G  T  S  E  W  S  A  Q  Q  I  T  E  A  W  G  V  A  Q  R  L  D  L  V  G  P  I  V  E  Q  P  E  Y  N  L  L  S  R  H  K  :  V  E  S  E  Y  L  P  L  Y  S  N  Y  G  I  G  L  T  T  W  S  P  L  A  S  G  V  L  T  G  K  Y  T  S  G  N  I  P  P  D  S  R  F  A  L  E  N  Y  K  :  N  L  A  S  R  S  L  V  D  D  V  L  R  K  V  N  G  L  K  P  I  A  E  E  L  G  V  P  L  P  Q  L  A  I  A  W  C  A  A  N  P  N  V  S  S  V  I  T  G  A  T  K  E  Y  Q  :  I  Q  E  N  M  K  A  I  N  V  I  P  M  L  T  P  A  V  M  E  K  I  E  A  I  V  Q  S  K  P  K  R  Q  D  S  Y  R  *  T  N  L  *  D  P  L  V  V  Q  K  S  S  V  V  Q  D  S  V  C  F  F  I  I  M  Y  L  H  P  L  L  L  C  H  I  *  R  H  L  *  E  L  V  F  F  L  N  Q  K  T  F  N  D  G  E  F  S  T  F  L  *  V  D  E  *  L  Y  W  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11103" stop="10441"/>
                    <exon start="8829" stop="8686"/>
                    <exon start="7860" stop="7696"/>
                    <exon start="6884" stop="6771"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1083</number_coding_nucleotides>
                  <number_encoded_amino_acids>361</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STHQRNLNSITNSLKKTNLFPLFLILDLPQKMQMQYKNLGRSGLKVSQLSYGAWVTFGNQLDVKEAKTLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGSGPNDKGLSRKHIIEGTKASLKRLDMDYVDLIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGVAQRLDLVGPIVEQPEYNLLSRHKVESEYLPLYSNYGIGLTTWSPLASGVLTGKYTSGNIPPDSRFALENYKNLASRSLVDDVLRKVNGLKPIAEELGVPLPQLAIAWCAANPNVSSVITGATKEYQIQENMKAINVIPMLTPAVMEKIEAIVQSKPKRQDSYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 41 chains have been computed
$ 
$ memory statistics:
$ 8608 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2152 bytes was the average size of a spliced alignment
$ 5624 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5624 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 41 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 02:31:33
-->
