<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 12:40:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0165F06-ONpAy/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-ScWm5V/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScWm5V/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341412" ref_strand="+" ref_description="SGN-U341412        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain, PF04578: Protein of unknown function, DUF594 | chr5:18439212-18442269 REVERSE | Aliases: MFC19.14, MFC19_14(evalue: 7e-26, score=114) genbank/nr: unnamed(evalue: 2e-24, score=115)">
      <seq>tgggaagcaatttatcgatgagccatgcttttactagctgcaagtgcaatattccctaatgctgagaggagaaggctaattaatttgattccggacagcgtgaggaaagcatggaaagattgggaaatagaagtgctgattctaggaagcctcatcttacagattatgcttattctttttggcaaacgcaggcagtgtgtggcgaagttatggatcagaatgactctatgggcatcttacttactagcagattggattgctattgcttcattaggtatcattgctcacaatacgttggattaatgcaaacatacaagtgatgatgacaatttcaaggatgaattgatgacgatctgggcgccatttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165F06-ONpAy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0165F06.1" temp_strand="-" temp_description="C12HBa0165F06.1  AC216399.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0165F06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3153" stop="1518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2853" g_stop="2817" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2816" i_stop="2150" i_length="667">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2149" g_stop="1818" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="369" r_length="332" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165F06.1" gen_strand="-" ref_id="SGN-U341412" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2853" e_stop="2817"/>
          <exon e_start="2149" e_stop="1818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAAGCAATTTATCGATAAGCCATGCTTTTACTAGGTACTGTTTGTTTCTGCTTACTGTTCTTGCTTCATCTAATTTTGTTTCGAAGTTAGTGTTGGAAATGTGAACTTAAAGTTTAAGTGTCTGTTACTCAATCTAGGTGTGTTGTTAGAGTCTTTCGAGGATGTTTAGTAATTATGGTTCGTGAAACTGAACGTTTAATGGTTAATATTGTTGCTTTATATATATATGGTAGGATAGTTTGTTGTTTTGTAAGAGTGGAGTTTTTTTTAATGATATAGGTTTGCTTTATATTTATCTTCCTTTCCCATACTCATTGTGCCTTATTTTATGAAGAGCCCACCTTATATTTGTTTGAGCGGGTTAGAGTCTCATATCGATTGGGGAATGAACTGATTGTTTGTTTATATCCCCTCATGAGCTAGCTTTTGGGGTTGAGTTAGTCTCAGGTGCTATATGATATATCAGAGCCAGATCTATTTCTGTTTGGGCTCATGCTCCACGGTCTAGTTGGGTCTGGGTGTGAAGGGGTGTTGGAGTGGGTTAGAGTCCCACGTTGATTGGAAATGGTCTGATAGTTTGTTTATATGGACGTGGACGATGCTTCCATCATGAGCTAGTTTTTGGGGTTGAGTTAGGCTCGGGGGTCATATTCTTACAATATTCCGACCTAGTTTTCCAATTTTTATCTTTGTTTTGGCAGCTGCAAGTGCAATATTCGTTAATGCTGAGAGGAGAAGGCTAATTAATTTGATTCCGGACAGCGTGAGGAAAGCATGGAAAGATTGGGAAATAGAAGTGCTGATTCTAGGAAGCCTCATCTTACAGATTATGCTTATTCTTTTTGGCAAACGCAGGCAGTGTGTGGCGAATTTATGGATCAGAATGACTCTATGGACATCTTACTTACTAGCAGATTGGATTGCTATTGTTTCATTAGGTATCATTGCTCAGAATACGTTGGATAAATGCAAACAAACAAGTGATGATGACAATTTCAAGGATGAATTGATGTCGTTCTGGGCGCCATTTATG</genome_strand>
        <mrna_strand>TGGGAAGCAATTTATCGATGAGCCATGCTTTTACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAAGTGCAATATTCCCTAATGCTGAGAGGAGAAGGCTAATTAATTTGATTCCGGACAGCGTGAGGAAAGCATGGAAAGATTGGGAAATAGAAGTGCTGATTCTAGGAAGCCTCATCTTACAGATTATGCTTATTCTTTTTGGCAAACGCAGGCAGTGTGTGGCGAAGTTATGGATCAGAATGACTCTATGGGCATCTTACTTACTAGCAGATTGGATTGCTATTGCTTCATTAGGTATCATTGCTCACAATACGTTGGATTAATGCAAACATACAAGTGATGATGACAATTTCAAGGATGAATTGATGACGATCTGGGCGCCATTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScWm5V/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339883" ref_strand="-" ref_description="SGN-U339883        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tgttaccattcatcatcgattatcacattcaatcttttgatgctaaccagtagttagctactgggtaagcaatgcttcaaataatttgcacttcagtttcacctgatgcattagttatgtattttaattctactcaatgaggcccttattatcctctgtaacaattttaaattttgatgtgattcacctgtaatttctaatatatacagaactttctcgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165F06-ONpAy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0165F06.1" temp_strand="-" temp_description="C12HBa0165F06.1  AC216399.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0165F06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4228" stop="3409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3928" g_stop="3691" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165F06.1" gen_strand="-" ref_id="SGN-U339883" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339883" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3928" e_stop="3691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACCATTCATCATCGATTATCACATTCAATCTTTTGATGCTAACCAGTAGTTAGCTACTGGGTAAGCAATGCTTC-AATAATTTGCACTTCAGTTTCACCTGATGCATTAGTTATGTATTTTAATTCTACTCAATGAGGCCCTTATTATCCTCTGTAACAATTTTAAATTTTGATGTGATTCACCTGTAATTTCTAATATATACAGAACTTTCTCGTGCTTGATATTGAAACAACA</genome_strand>
        <mrna_strand>TGTTACCATTCATCATCGATTATCACATTCAATCTTTTGATGCTAACCAGTAGTTAGCTACTGGGTAAGCAATGCTTCAAATAATTTGCACTTCAGTTTCACCTGATGCATTAGTTATGTATTTTAATTCTACTCAATGAGGCCCTTATTATCCTCTGTAACAATTTTAAATTTTGATGTGATTCACCTGTAATTTCTAATATATACAGAACTTTCTCGTGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScWm5V/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325887" ref_strand="+" ref_description="SGN-U325887        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT1G20650.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr1:7158234-7162548 REVERSE | Aliases: F5M15.3 (evalue: 5e-93, score=337) genbank/nr: gi|51971194|dbj|BAD44289.1| unknown protein [Arabidopsis thaliana] >gi|8886951|gb|AAF80637.1| F2D10.13 [Arabidopsis thaliana] >gi|8778594|gb|AAF79602.1| F5M15.3 [Arabidopsis thaliana] (evalue: 6e-93, score=343)">
      <seq>aataaactatctttttctctctctctctctccttagctccatttatatcttgcattttttttttttgattcctcctatatatatcattactatttttatttttatttttttgtaattatgtaatcaacaaatgattttctagctgaaatttgaggtgttattattctaatttcttgaaatcttttgcatttgttttggaaatacttggccaaagatttcaatgttgaaaaaaaataataataaaatgagttgtttttcttgcatgagctctcgtcctaagattattgaagattatgatgaagatatgacctcaagatccaacaattctgcagtccacgcgaggggaaattctagtgattcaggaagtggaaatgggagaaaggaaggcttttttagaagtaaaaaaagtggggaaagtaacaatcagaacaacaatgtagctcggagtttcgcgttcaaggaactagccatcgcaactcagagttttagggaaacaaatcttattggcgaaggcggctttggaagtgtctataaaggccgtatagattcaggccagatagtcgcgatcaaacaacttaatctcgaaggccttcaagggaaccaagaatttgttgtggaggtacttatgttgagtttaatgcatcataacaatcttgtcaatctgatcggatactgcactcacggagaacagaggttgttggtttacgagtttatgccactaggcagcctggaaaaccatcttttcgatttagaaccaggaacgacgccactgagttggaagacaaggctaaagatagccgcaggtgcagctcatggactcgagtatctacacaaagcaaatccacccgtcatctaccgtgatttgaaatcttcaaatatattattggacaatgatttcaatccaaagctgtcggattttggacttgcaaaacttggaccggtaggtgacaacactcatgtttcgancagagtgatgggaacctacggatattgtgcccccgagtatgccatgactgggaaagtgactctgaaatctgatatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165F06-ONpAy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0165F06.1" temp_strand="+" temp_description="C12HBa0165F06.1  AC216399.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0165F06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18792" stop="21573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19092" g_stop="19424" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19425" i_stop="19848" i_length="424">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19849" g_stop="19884" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="368" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19885" i_stop="20120" i_length="236">
            <donor d_prob="0.953" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20121" g_stop="20308" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="556" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20309" i_stop="20529" i_length="221">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20530" g_stop="20719" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="746" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20720" i_stop="20974" i_length="255">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20975" g_stop="21273" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="1045" r_length="299" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165F06.1" gen_strand="+" ref_id="SGN-U325887" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1046</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19092" e_stop="19424"/>
          <exon e_start="19849" e_stop="19884"/>
          <exon e_start="20121" e_stop="20308"/>
          <exon e_start="20530" e_stop="20719"/>
          <exon e_start="20975" e_stop="21273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAACTATCTTTCTCTCTCTCTCTCTCTCCTTAGCTCCATTTATATCTTGCATATTTTTTTTTTGATTCCTCCTATATATATCATTACTATTTTTATTTTTATTTTTTTTGTAATTGTGTAATCAACAAATGATTTTCTAGCTGAAATTTGAGGTGTTATTATTCTAATTTCTTGAAATCTTTTGCATTTGTTTTGGAAATACTTGGCCAAAGATTTCAATGTTGAAAAAAAATAAAAATAAAATGAGTTGTTTTTCTTGCATGAGCTCTCGTCCTAAGATTATTGAAGATTATGATGAAGACATGACCTCAAGATCCAACAATTCTGCAGGTTTTATTTTTTTTATTTTATTTCATTTTACATAAAAAAAAATTTCATTTTTATGTTATTAAATTTTATAGCCTTAGAGCAACGGTATAGTTGTCTCCGTGTTATCACATGTTCGTTGCACCTCTTTGGAGTGTGGCCCTTTTTCCTGTGTGAATGCGGGATGCTTTGTGCACTATATTGCTCGTGTCCTGAAAAAATGTTGTCGCACTTGTGTCAGATCCTCCAAAATGGAATAACTCTTGAAGGAATTAGGCACATTCGCGATGACATTTTTTGAAGGATTCGAGCAATCTTAGAATGTAATATATGATACAATGTCGTTGAAATTACTATCGACTGTGAAATTTTGATGTGTTTAGATGTTATATGAACGATGTCTTTATGTATCTGTTACAATATGTAAAATTTTCGAGTTCTTTTGCAGTCCACGCGAGGGGGAATTCTAGTGATTCAGGAAGTGGTAAGGATTTTTGTTAAATTGTATTGTTTAAGAACTAATAAGATGCTTTCACCCTTCGAAATGTTGTTGCATCTGTGTCAGATCCTCCAAAATTGCATAGCTTTTGAAGGACTAGACACACACGTGACAATATTTTTGAAGAGTCTGAACAACATCAGTTGAGGATGTATGAGATTCAAATTGCATTTGGGAGAGACGGATTTTTTTCCTTCATTTTTGTGGAATTTTCGATGTAGGAAATGGGAGAAAGGAAGGCTTTTTTAGAAGTAAAAAAAGTGGGGAAAGTAACAATCAGAACAACAATGTAGCTCGGAGTTTCGCGTTCAAGGAACTAGCCATCGCGACTCAGAGTTTTAGGGAAACAAATCTTATTGGCGAAGGCGGCTTTGGAAGTGTCTATAAAGGCCGTATAGATTCAGGCCAGGCAAGTTTTTTGCTTTCGAAATTTCGATGGTTTGATTCTCATTCTATGTATTATAATTGTCTTAACGAAGAAGGGTGTTCAACTGACCACCCGTTGGTCTATGTAGCTCCGCGACTAGCCTAAATGATTGAAGACAGGGGAATGTAGAAACAGAATTTGCCTTTAAATTGTTACTGTGTGTGACAGTTGATGATTAGTTGTGTTTTTGATGTTACGAGCAGATAGTCGCGATCAAACAACTTAATCTCGAAGGCCTTCAAGGGAACCAAGAATTTGTTGTGGAGGTACTTATGTTGAGTTTAATGCATCATAACAATCTTGTCAATCTGATCGGATACTGCACTCACGGAGAACAGAGGTTGTTGGTTTACGAGTTTATGCCACTAGGCAGCCTGGAAAACCATCTTTTCGGTAATTTTTGTAACATCTCCTCGAACTCTTCTTGCTCGTATATTGAAGGCTAAATTTCTAAATATCCCCTTAAACTTGACACGGTTTGTAAGTTAGACATACAAATTGGAATCAAGAAGAAATGTGTTTTTCTGAGATAGTAACGGTTAGTTGAGTGACCGTTTGAGAAATCAACTCGATTTGTACTATCACTATAGTTATCATTTTCGATTTTTGGGATACTTACTAACTTTCTGTTATCGTTAATGTTGACAGATTTAGAACCAGGAACGACGCCACTGAGTTGGAAGACAAGGCTAAAGATAGCCGCAGGTGCAGCTCATGGACTCGAGTATCTACACAAAGCAAATCCACCCGTCATCTACCGTGATTTGAAATCTTCAAATATATTATTGGACAATGATTTCAATCCAAAGCTGTCGGATTTTGGACTTGCAAAACTTGGACCGGTAGGTGACAACACTCATGTTTCGACAAGAGTGATGGGAACCTACGGATATTGTGCCCCCGAGTATGCCATGACTGGGAAGTTGACTCTGAAATCTGATATCTAT</genome_strand>
        <mrna_strand>AATAAACTATCTTTTTCTCTCTCTCTCTCTCCTTAGCTCCATTTATATCTTGCATTTTTTTTTTTTGATTCCTCCTATATATATCATTACTATTTTTATTTTTA-TTTTTTTGTAATTATGTAATCAACAAATGATTTTCTAGCTGAAATTTGAGGTGTTATTATTCTAATTTCTTGAAATCTTTTGCATTTGTTTTGGAAATACTTGGCCAAAGATTTCAATGTTGAAAAAAAATAATAATAAAATGAGTTGTTTTTCTTGCATGAGCTCTCGTCCTAAGATTATTGAAGATTATGATGAAGATATGACCTCAAGATCCAACAATTCTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACGCGAGGGGAAATTCTAGTGATTCAGGAAGTG............................................................................................................................................................................................................................................GAAATGGGAGAAAGGAAGGCTTTTTTAGAAGTAAAAAAAGTGGGGAAAGTAACAATCAGAACAACAATGTAGCTCGGAGTTTCGCGTTCAAGGAACTAGCCATCGCAACTCAGAGTTTTAGGGAAACAAATCTTATTGGCGAAGGCGGCTTTGGAAGTGTCTATAAAGGCCGTATAGATTCAGGCCAG.............................................................................................................................................................................................................................ATAGTCGCGATCAAACAACTTAATCTCGAAGGCCTTCAAGGGAACCAAGAATTTGTTGTGGAGGTACTTATGTTGAGTTTAATGCATCATAACAATCTTGTCAATCTGATCGGATACTGCACTCACGGAGAACAGAGGTTGTTGGTTTACGAGTTTATGCCACTAGGCAGCCTGGAAAACCATCTTTTCG...............................................................................................................................................................................................................................................................ATTTAGAACCAGGAACGACGCCACTGAGTTGGAAGACAAGGCTAAAGATAGCCGCAGGTGCAGCTCATGGACTCGAGTATCTACACAAAGCAAATCCACCCGTCATCTACCGTGATTTGAAATCTTCAAATATATTATTGGACAATGATTTCAATCCAAAGCTGTCGGATTTTGGACTTGCAAAACTTGGACCGGTAGGTGACAACACTCATGTTTCGANCAGAGTGATGGGAACCTACGGATATTGTGCCCCCGAGTATGCCATGACTGGGAAAGTGACTCTGAAATCTGATATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScWm5V/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341066" ref_strand="-" ref_description="SGN-U341066        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G20650.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr1:7158234-7162548 REVERSE | Aliases: F5M15.3 (evalue: 1e-25, score=113) genbank/nr: gi|51971194|dbj|BAD44289.1| unknown protein [Arabidopsis thaliana] >gi|8886951|gb|AAF80637.1| F2D10.13 [Arabidopsis thaliana] >gi|8778594|gb|AAF79602.1| F5M15.3 [Arabidopsis thaliana] (evalue: 1e-23, score=113)">
      <seq>cttgttgtttggtctaatcctttccttaaggaccggaggaaatacattcatttggtggatccaatgttggatggtcaattctcttcgcgttgtttgcaccatgcagtttctgttactgcaatgtgccttcaagaacaagccagttttcgtcccagcattactgatattgttaccgcgcttgactatcttctacttcaagcacaacactcaggtacaaatagaggtggttcacaatgtgacaagcacataccgcctccatcaacagaagagttcaatgtcagttcacgaaatcgaagctatgacaacatggctattacattttaaattttttccgtctgaacaaactgctagatatatagacatggggatcgcggaatattatagatgaaaatggaggtgcattttatcgtttcaacgttatagcagaggatatcggtcacttcagcttttgattatgagatgacgttttcttgaatcaagaacttcagttgatttgcaggaacgcggtagactgctcttttccctgtatattgactactcgtaattcgtaatcagttgaggaaccattgaatattgtttcaaatatctgtatattttggtgtatatgaaaaaacaaaaaccaaagaaatggatgtatatcaacgtcaagattgtatatatacacccatacttcttgtaatttcatgcatattgttgacatgatcatataagataatatgaacaatagtgaagacttgttgttgttcgattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165F06-ONpAy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0165F06.1" temp_strand="+" temp_description="C12HBa0165F06.1  AC216399.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0165F06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="21482" stop="79883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21783" g_stop="22229" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="459" r_length="447" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22230" i_stop="22751" i_length="522">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22752" g_stop="23058" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="766" r_length="307" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165F06.1" gen_strand="+" ref_id="SGN-U341066" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341066" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21783" e_stop="22229"/>
          <exon e_start="22752" e_stop="23058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATCCTTTCCTTAAGGACCGGAGGAAATACATTCATTTGGTGGATCCGATGTTGGATGGTCAATTCTCTTCGCGTTGTTTGCACCATGCAGTTGCTGTTACTGCAATGTGTCTTCAAGAACAAGCCAGTTTTCGCCCCAGCATTACTGATATTGTTACCGCGCTTGACTATCTTCTACTTCAAGCACAACATTCAGGTACAAGTAGAGGTGGTTCACAATCTGACAAGCACATACCGCCTCCATCAACAGAAGAGTTCAATGTCAGTTCACGAAATCGAAGCTATGACAACATGGCTATTACATTTTAAATTTTTTCCGTCTGAACAAACTGCTAGATATATAGAGATGGGGATCGTGGAATATCACAGATGAAAATGGAGGTGCATTTTATTGTTTCAACGTTGTAGCAGAGGATATCGGTCACTTCAGCTTTTGATTATGAGGTAACTAGACTATCTCGAACACATTAATCTTCGTATCTGTACGTATCACGTTTATGATAAAAAAACACATCTATGTATCACGTTATTGCGAGTTTCCTACTTGAACTTTTAGGTGTCCACTTTTTCTATCTGAACTATTTATCAAAACACACCTCAACTATCAGTTGTTCCTTCCTACATGAAATATAACTGTCGTTCACGTAGAAAAAGTAAACAACTGATAGTTGAGGTGTCTTTCAATAAACATGAATAGTTTATGAAACTGACACACCTAATAGTTCATGTATGAAACTCGAAAAATCAGGATACTTTAGATGTGTTTTTGATCCGTCGTTGTTTGAACAATCACTCTAATTTAACTTATTTTAGCTAGTAGTTTTGTTTTAGCTGACCTGATAGTGTAAAAACGTCGATTTCTTTTCTCACTTAACCTCCATATGTCCTAAGTTCCTTGTGAAGTCCTTATTTTCTTATCCCAGTAAGAACAGAACAGATTTCATTCAAATGTTTTTCGCGTTTCAGATGACGTTTTCTTGAATCAAGAACTTCAGTTGATTTGCAGGAACGCGGTAGACTGCTCTTTTCCCTGTACATTGACTACTCATAATTCGTAATCAGTTGAGGAACCATTGAATATTGTTTCAAATATCTGTATATTTTGGTGTATGTGAAAAAACACAAACCAAAGAAATGGATGTATATCAACGTCAAGATTGTATACATACACCCATACTTCTTGTAATTTCATGCATATTGTTGACATGATCATATAAGATAATATGAACAATAGTGAAGACATGTTGTTGTTCGATTATCTTCTAATTTTAAA</genome_strand>
        <mrna_strand>TCTAATCCTTTCCTTAAGGACCGGAGGAAATACATTCATTTGGTGGATCCAATGTTGGATGGTCAATTCTCTTCGCGTTGTTTGCACCATGCAGTTTCTGTTACTGCAATGTGCCTTCAAGAACAAGCCAGTTTTCGTCCCAGCATTACTGATATTGTTACCGCGCTTGACTATCTTCTACTTCAAGCACAACACTCAGGTACAAATAGAGGTGGTTCACAATGTGACAAGCACATACCGCCTCCATCAACAGAAGAGTTCAATGTCAGTTCACGAAATCGAAGCTATGACAACATGGCTATTACATTTTAAATTTTTTCCGTCTGAACAAACTGCTAGATATATAGACATGGGGATCGCGGAATATTATAGATGAAAATGGAGGTGCATTTTATCGTTTCAACGTTATAGCAGAGGATATCGGTCACTTCAGCTTTTGATTATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACGTTTTCTTGAATCAAGAACTTCAGTTGATTTGCAGGAACGCGGTAGACTGCTCTTTTCCCTGTATATTGACTACTCGTAATTCGTAATCAGTTGAGGAACCATTGAATATTGTTTCAAATATCTGTATATTTTGGTGTATATGAAAAAACAAAAACCAAAGAAATGGATGTATATCAACGTCAAGATTGTATATATACACCCATACTTCTTGTAATTTCATGCATATTGTTGACATGATCATATAAGATAATATGAACAATAGTGAAGACTTGTTGTTGTTCGATTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScWm5V/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346649" ref_strand="+" ref_description="SGN-U346649        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | cysteine endopeptidase, papain-type (XCP1), identical to papain-type cysteine endopeptidase XCP1 GI:6708181 from (Arabidopsis thaliana) | chr4:16810487-16812009 FORWARD | Aliases: None(evalue: 3e-86, score=315) genbank/nr: gi|37780041|gb|AAP32193.1| cysteine protease 14 [Trifolium repens](evalue: 5e-89, score=330)">
      <seq>tctatattactacaaaacaaatataaaaatggctttcaaattctcatttcttatcctatttcccattttattactttctctcatcatgtcacgcgcaacatttgcgcgtgacttctccatcgtgggatattcccccgatgacttgaatagcatcgataacatcatcaatctcttcgagacgtggatggagagacacaacaagatttacaagagcattgaagagaaattgcatagatttgagatttttagagataatttgaaacacattaatgagaggaacaatattgttagtaattattcgcttggtttgaatgattttgcagatttaagccatgatgaattcaagaaaatgtatttaggactcaaagttcaaaatgaaaggagatcaaatgatgaatttatttatagtgattttgtggatttgcctaagtctgttgattggagaaaaaaaggtgctgtgactgatgtcaaaaatcaaggctcatgtggtagttgttgggcgttttcgacggtagcggcggtagaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165F06-ONpAy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0165F06.1" temp_strand="+" temp_description="C12HBa0165F06.1  AC216399.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0165F06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="28852" stop="30704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29148" g_stop="29637" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29638" i_stop="30364" i_length="727">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30365" g_stop="30404" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="528" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165F06.1" gen_strand="+" ref_id="SGN-U346649" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29148" e_stop="29637"/>
          <exon e_start="30365" e_stop="30404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTAATTCCTACAAAACAAAAATAAAAATGGCTTCCAAATTCTCATTTCTTATCCTATTTCCCATTTTATTACTTTCTCTCATCATGTCACGCCGCAACATTTGCGCGTGACTTCTCCATCGTGGGATATTCCCCCGATGACTTGAATAGCATCGATAACATCATCAATCTCTTCGAGACGTGGATGGAGAGACACAACAAGATTTACAAGAGCATTGAAGAGAAATTGCATAGATTTGAGATTTTTAGAGATAATTTGAAACACATTAATGAGAGGAACAATATTGTTAGTAATTATTCGCTTGGTTTGAATGATTTTGCAGATTTAAGCCATGATGAATTCAAGAAAATGTATTTAGGACTCAAAGTTCAAAATGAAAGGAGATCAAATGATGAATTTATTTATAGTGATTTTGTGGATTTGCCTAAGTCTGTTGATTGGAGAAAAAAAGGTGCTGTGACTGATGTCAAAAATCAAGGCTCATGTGGTAAGTTAATTATTATAAGGGACTCATTTTTAGTGTTAACAACTTTAAAGGGTATTTCAGTCATTTTAACATAAAAACGTTCATTGGCCTTTTCTTTTTACCAAACACTTCAATTAATCCTTCATTTTCAAATTCATAGATTTTAGGGGTATTTTTAGTCATTTTAACAAAACGAAGTGTTGAGACACTTTTTTTTTTCTTTACCAACCACTTCAATTAATCCTTTATTTTCAAATTCATAGATTTTAAGGGTATTTTAGTCATTTCAGCAAAAAAACGTTTAGACAACGTTTTTTTACTGAACACTTCAATTAATCCTTTATTTCAAAATTTATAGATTTCTATATTGCATCGAACTCTTTAAAAATATCTTCAGGTGTATGCAGATCCTCCGAAACCAATATATTTTTGGAGATATGATCGACATGGATGCGATAATATTTTTGTAAGGTCCAAGCAACATTGGAAAAACATGTTTATTTTTTTTCTTAGTTTCATATTCAATAAATCCAAACACTTACTAATCCTTATTTTCATATTTATATTTAGGGAAAAAGTCATATTTGTCCCTCTACTATCGAAAAAATAAACTATATTAGTCATATGTTATACTAATATACCTTTACAATCATAGTTTAGAGCTATATTTACCCGTAAAAACTTCATTTTCAGCTTTAAAAGGTCATGTATCATGCTCTTATCGAACAAAATATGTTGAGTTTTGCAGGTAGTTGTTGGGCGTTTTCGACGGTAGCGGCGGTAGAGGG</genome_strand>
        <mrna_strand>TCTAT-ATTACTACAAAACAAATATAAAAATGGCTTTCAAATTCTCATTTCTTATCCTATTTCCCATTTTATTACTTTCTCTCATCATGTCACG-CGCAACATTTGCGCGTGACTTCTCCATCGTGGGATATTCCCCCGATGACTTGAATAGCATCGATAACATCATCAATCTCTTCGAGACGTGGATGGAGAGACACAACAAGATTTACAAGAGCATTGAAGAGAAATTGCATAGATTTGAGATTTTTAGAGATAATTTGAAACACATTAATGAGAGGAACAATATTGTTAGTAATTATTCGCTTGGTTTGAATGATTTTGCAGATTTAAGCCATGATGAATTCAAGAAAATGTATTTAGGACTCAAAGTTCAAAATGAAAGGAGATCAAATGATGAATTTATTTATAGTGATTTTGTGGATTTGCCTAAGTCTGTTGATTGGAGAAAAAAAGGTGCTGTGACTGATGTCAAAAATCAAGGCTCATGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGTTGGGCGTTTTCGACGGTAGCGGCGGTAGAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScWm5V/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318876" ref_strand="+" ref_description="SGN-U318876        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | DNA-binding family protein / AT-hook protein 1 (AHP1), identical to AT-hook protein 1 (Arabidopsis thaliana) gi:2598227:emb:CAA10857 | chr2:14241283-14244634 FORWARD | Aliases: None(evalue: 5e-58, score=222) genbank/nr: gi|50947571|ref|XP_483313.1| putative AT-hook DNA-binding protein [Oryza sativa (japonica cultivar-group)] >gi|42408801|dbj|BAD10062.1| putative AT-hook DNA-binding protein [Oryza sativa (japonica cultivar-group)] (evalue: 7e-65, score=251)">
      <seq>ttaccttttcttaccttcctttttcctttttcacctttatttattttgtatttttattttcaaattaaaaaacacaaattatttctaaaaaaaaaaaagtcatttctatttctcttttttttttctcttctctaaaccctaaatatatattttctttttctcttccatcttgacaatttccaatttacggtgaatttggggggaaaaatcgatgaaaaatgtcggtaactgaggcaggtagtggagtaatgacgagtagagatcatttcagtgttgccggagttcaaaattctccgtcgaatgttccggcaacgacgccggtggttcagaatatgcatttgggttacagagatgaaaatacggctgtgtttgccccgccaccgtaccagtcggctgaaggttctgccggagctgggacatcgatgttgcagaacttgaacaataattcgtcggagccgatgaaacggaagagagggaggcctaggaaatacggtccggatgggtctatggcattgggattgaatccggctgcttcgccggttggtggtggttctcttggcggtagcttgtcgccccgagatccgggtaattctgctggtgctcagatgcattctggaggaccaggttcgccaaattcgtcgaagaaaggtagagggagacctcctggatccggcaaaaaaacagcaaatggacaatcttggatcaacaggatttggattcacaccacatattatcgctgtgaaaccaggagaggatgtggcatataaaataatgtcgttttctcagaatggtccaagggctgtgtgcatcttatctgccagtggtgcaatatcatatgtgactcttaaacaaactgccacgtccggtggaacggcaacatatgagggacggtttgagattttgtctctctctggttcatttatgctgtctgacattggtggtcaacaaagcagaacaggtggattaagtgtatcattagctggatctgatggacggattttaggcggttgtgtggcgggtgttctaacagccgcatcaccagtccaggttatcgtaggtagcttcattgcagatggtcggaaagagccaaaaacatcaaaccattttgaggttttacctgctccgttgaatgccaatcttggtgttggtggtggtttgacaggggccaatagcccaccatcacgaggcacttatagtgaatcatctggtggaccaggcagccccataaatcagaggggtccagtatgcaccaacgataacctgcaaggaatctcaagcatgccttggaaatgagttattaacgctctcttttctgaccaattgaactccgtgtcatcgactagttcactgaagaagactccaagtgaggattgttgtaattttaatcggtgtaatcgtagttgtgcagaaataaggttcacagacacttcttacctcaagttcaagaactggtgagaaacgtcgatttgctgatgcgtagttgttctgcattttctgtcttgttgatttaatttcttgtatttcatcagtcataggacatggtttggctttttttgttctatctagtaatcacttactcatattagccatcttccaactttagagtgtattttattgcaattctgtgatctagaataatatcaattatgtactttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165F06-ONpAy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0165F06.1" temp_strand="-" temp_description="C12HBa0165F06.1  AC216399.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0165F06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="38412" stop="17929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38112" g_stop="37924" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37923" i_stop="37516" i_length="408">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37515" g_stop="37006" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="700" r_length="511" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37005" i_stop="36050" i_length="956">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36049" g_stop="35997" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="753" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35996" i_stop="35566" i_length="431">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35565" g_stop="35434" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="885" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35433" i_stop="34909" i_length="525">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34908" g_stop="34747" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="886" r_stop="1047" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34746" i_stop="34130" i_length="617">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34129" g_stop="33520" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1048" r_stop="1657" r_length="610" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33519" i_stop="32412" i_length="1108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32411" g_stop="32390" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1658" r_stop="1679" r_length="22" r_score="0.773"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165F06.1" gen_strand="-" ref_id="SGN-U318876" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1678</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38112" e_stop="37924"/>
          <exon e_start="37515" e_stop="37006"/>
          <exon e_start="36049" e_stop="35997"/>
          <exon e_start="35565" e_stop="35434"/>
          <exon e_start="34908" e_stop="34747"/>
          <exon e_start="34129" e_stop="33520"/>
          <exon e_start="32411" e_stop="32390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTTTTCTTACCTTCCTTTTTCCTTTTTCACCTTTATTTATTTTGTATTTTTATTTTCAAATTAAAAAACACAAATTATTTCTAAAAAAAAAAAAGTCATTTCTATTTCTCTTTTTTTTTTCTCTTCTCTAAACCCTAAATATATATTTTCTTTTTCTCTTCCATCTTGACAATTTCCAATTTACGGTAAGAAAATTCAGATTTCTTCTTATTTTCAATTGAATTTTCAGATTTATTTTATTTTTCGAAAAAAATAATTATTTTTTTAATTGTTTATGTGTTGATACTATTTTTCGACCTTTATTTAATTTTTTAATTTTTTTTTTTGCTTGATCTGTTAAAAATTTGGGGAAAATTCTGAATTTTTTTCTGGGTTTATAATTAAGCTTGATCAATTATGCAAAATTTTGTTCTGTTGATTTTCAGTTGAATTTCTAGGGTTAGGGTTTATACTGATGAACTTTTGCTAGGGTTTTAGCTAAGAAATCTGTAAATTTCGTTTTTTTTTCTGCTACAAAGAGTAATTTTGTAGATTTATAGAAGCCATTGGAGCTGAAAAAAATGTTTTTTTTTGGTTATGGTGTTCTTTCTCAGGTGAATTTGGGGGGAAAAATCGATGAAAAATGTCGGTAACTGAGGCAGGTAGTGGAGTAATGACGAGTAGAGATCATTTCAGTGTTGCCGGAGTTCAAAATTCTCCGTCGAATGTTCCGGCAACGACGCCGGTGGTTCAGAATATGCATTTGGGTTACAGAGATGAAAATACGGCTGTGTTTGCCCCGCCACCGTACCAGTCGGCTGAAGGTTCTGCCGGAGCTGGGACATCGATGTTGCAGAACTTGAACAATAATTCGTCGGAGCCGATGAAACGGAAGAGAGGGAGGCCTAGGAAATACGGTCCGGATGGGTCTATGGCATTGGGATTGAATCCGGCTGCTTCGCCGGTTGGTGGTGGTTCTCTTGGCGGTAGCTTGTCGCCCCGAGATCCGGGTAATTCTGCTGGTGCTCAGATGCATTCTGGAGGACCAGGTTCGCCAAATTCGTCGAAGAAAGGTAGAGGGAGACCTCCTGGATCCGGC-AAAAAACAGCAAATGGACAATCTTGGTAAATTCTTATTTATATATAAGCATTTTTTCATGTGTAATATAGAATATTGAATGTTTATGCTTTTGCTTTCAATGTCTTGAATTGAGCATAGTTAGTTGTCATAGTATAATATTTATTTCAAAAGTACTTTCTCCCTCACTTAGACTTGTCGCGTTTCCTTTCTCGAGAGTCGAACAGTATGCACTTTGACAAGTATTTAATATGTTTTTTTCACTTATACTTGTCACGTTTCCTCAAGAGAGAGGTATGCACTTTGACCAACATTTTAATATACTTTTTTCATTATTTTTCTTTACGATCTTAGAGTTCGAGTCAACTTTCGCGGACTTCGATTAATTTCACGAGATACCTATCACCTCCCAGTAACATGTACCATGTAACCGTATCCATCAAAACTAGGATAGATGGGAAGAATTAACTAGTGTTTTTCTCATCGAACTTGGAGCGTCATGACTCTCTGTCAATCATTTCATTGACCACTAGACCACACTCTTGAGTGCTTTTTATTATTATATTAATATTTGAGATAGAATACAACTTATAGTATTTTTTGTATAGTTTTCAAATATCTAAATTTAATTAAATTAATCTAATCCAATTTAACTTCTTAGTTTATAAGAGAATAAAGAAAGATGGGATTTGGATCAATGAATCTACATAGACTGACTTCAGAATCTTACAGAGGAAGTAGTACTTATATCATATTCTGTATATTGTTTATTAAATATGTTTCTTTTCTTTATTTTTTCTTCCGCCTTTTCACCTTTTGGCAAATATTCAAGACAGATGCTGATTTTCCAATCCTTCTCCTCCATTTTCCTCTTTTTTGGCGGGTGGGTGGGAGGTTGTGAACATGTTATACTTGCCCTGTATAGTAAAATCCCACATTATCCTGCGTTTTTTTTTATTCAGCATCATTAATAGAACTTCTCAACGTCATTTTCTGATTGCAGGATCAACAGGATTTGGATTCACACCACATATTATCGCTGTGAAACCAGGAGAGGTAACCTCTTTATCCTTTGTATTTCCTTTGAATGCTAAATAGATTTTAAAAAATTGACTGGAAGAACATTTTATTTCTTATGAAACTTGGGAATAGCCAGCAAATATTCTAATGTCTCGAATTACGACTATTCCGTATTAGTTTTACTGTCAATATTTCAGTTTCACTGTCATGACATCTGAGAATTTGAATTAGGAGAAGTTAGAAGCTGGTTAAGCCCTTTCACCCATTTTTACTTGTCCAATTGCCTTGAAACTTCTCCTCTTAGCACCCAACCAATATACCGCTATTCTTTTCTAAACCCGGATCTAAGTGTCTACACGTGTTTAATGTTGAAACTTGGAATTCCAGTGTTGCCTTTGGATTCTTGTACTTTCTTGGACACCAGTGATAGTTTTCGAGATATCTAATCTTTACTATCTGATTTTCAGGATGTGGCATATAAAATAATGTCGTTTTCTCAGAATGGTCCAAGGGCTGTGTGCATCTTATCTGCCAGTGGTGCAATATCATATGTGACTCTTAAACAAACTGCCACGTCCGGTGGAACGGCAACATATGAGGTTTTACTTCTTAATATATGTTACATGTTTTAGCATATCACATTCCATCTCACATACATCAGCTCATTATAGTTTTTCAAAAAAAATAATCCAATTAATTGATGTCTTTTTGTAGTATTTCTGCATTACTTTTATTTATTTTTATATTCATTAGCACTCTTTTTTCACTAAAGCCCACACATTGATGTACTTTGCTCTTAAAGCCTCAATTTATTGTTGTAATTTAATTAGTCTCTTATTTACTTCATAATATTACTTCCAGGGGCATCTCACTTGGATGTGAGGGAAATTTTTTATCATTTTTCCATTCTACTTGAGAGATGTTTTTTTTTTTACTATTATTTCTAAACTCCACATGCAGTTCATATGCATTTTAATCTTATTCTTGATTTCAACTTCATTCTGCGCCTGAAATTAGTTGATCGTCTCTTCTAGAACTCACTGATCTGCAAATAAAAATCTGTTCTTCTGCATCGCTCTTTTCGTATTGTCTATTATTTCGTGCTTGACCTTTTCCTCCTGTAGGGACGGTTTGAGATTTTGTCTCTCTCTGGTTCATTTATGCTGTCTGACATTGGTGGTCAACAAAGCAGAACAGGTGGATTAAGTGTATCATTAGCTGGATCTGATGGACGGATTTTAGGCGGTTGTGTGGCGGGTGTTCTAACAGCCGCATCACCAGTCCAGGTTTGCCTTCTCATATTACATCCGATTCTTGAAAATGCTCGAGTATTTTGTTTGTCAAGTCCAAAATGGAAGATTGGAATTAGCAGTATCCGCCTTTCCTGGATTTAGTGTTAAATGGTAAATAATGAAGCTGGTATTGGTATATATACGAGACAAGCAATCCGTTTATTATTAAGTTTTTGTTTTGGCACTCTGATTACTTCTGTACCTCTTTCCTTTGGATGAGACAATTCTGGCTTTATGAAAGCATGCAGCATGCATCGTTCAGAATAAAGAACGAAAGGATGTGTGTGCGTCATCCCTTTTTTGTGAAGGGTGTAGGGCAGGGGACTTAAAAAAGAAGTACAATCATATCTTGTCATTAGTTATCTTTGACCTTTTGAGGTGTGTGAGGTTTACTATATTAAAAAGTTAACTGATAAAGAAATTAAAGAAGAAGAAGAAGAAGAAGAAAGCCGCACTCAAAGGTATGAGGACCTACTAATAATAACAGAGGTCAATGGCTTGGCACTTGTGCTCGCACTACCATTTATCGCATATGTTAAATGTTAAAAGAGTAAACCTGGTACAGATTTTGTTAGCATATAGCAGGCACTAATAAACGGCTTCTCTTCCAGGTTATCGTAGGTAGCTTCATTGCAGATGGTCGGAAAGAGCCAAAAACATCAAACCATTTTGAGGTTTTACCTGCTCCGTTGAATGCCAATCTTGGTGTTGGTGGTGGTTTGACAGGGGCCAATAGCCCACCATCACGAGGCACTTATAGTGAATCATCTGGTGGACCAGGCAGCCCCATAAATCAGAGGGGTCCAGTATGCACCAACGATAACCTGCAAGGAATCTCAAGCATGCCTTGGAAATGAGTTATTAACGCTCTCTTTTCTGACCAATTGAACTCCGTGTCATCGACTAGTTCACTGAAGAAGACTCCAAGTGAGGATTGTTGTAATTTTAATCGGTGTAATCGTAGTTGTGCAGAAATAAGGTTCACAGACACTTCTTACCTCAAGTTCAAGAACTGGTGAGAAACGTCGATTTGCTGATGCGTAGTTGTTCTGCATTTTCTGTCTTGTTGATTTAATTTCTTGTATTTCATCAGTCATAGGACATGGTTTGGCTTTTTTTGTTCTATCTAGTAATCACTTACTCATATTAGCCATCTTCCAACTTTAGAGTGTATTTTATTGCAATTCTGTGATCTAGAATAATATCAATTATGTACTTTTTATGTGGTGGTTAATTCATCATTTGGGAAGGGAATTGTTTTCCCATTGTCTTAGATATAATTCTCACAAACCAGGTTGTTCGGATCCTTTGAAAATAATTAACTTACGGAGAATCCGATGTACATTTGGAAACATTTTAAAGGATCTGAGTAACATAACAAATACGGAGTTAGGAATCAAACTTTATTAAATTTGAAATAGTATTTGGGGAGGCCATGCATGTCAGATCATTCAAAAATGTTGTTTTACTCGTGGTAAATGGGAGTACCATTATGTTACGACTATTTATGTCAATCAGGTCTATCTCAGCCTCAAGAGCTAGTTCAATTAATTGAGGATTGCCCCAACATTATACGGAATCCAAAAATTCTAATCAATCATTGATGCGTTACATTTCTTCTCAAACACCCCCGCTCATGTCTAAACCTCTTTCTCTGAAGCATGAGATACACCTAAATACTTGTTTTTTTTTTCAGCAAATACAATTCGAGATTTGCCTATATGTGTCCTCGATACACGTATTTATTGTGATTCACGTGTATCTATTTCAAATACATGCCCCATGGGGATGGTTTACAGGGTTCATAACTACTCCTTTTACTACAGGACGCTTACCTAGCCAATGCTTAGATTTGGCTCTACCCAAACTTTTCTAGTTCACCTACTCAGATGCTTTCAGCAGTTATCCGCTCTACCCAACGTTTACCGTGGCACGATAACTGGTACACCCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACTTTTGGGCAGCTGTTCACCGTTGGATCTCGCCAATACAGCCCCCTATAGTTTTCGTTACCGAGATATCTTTTTTTTTCATTCTTATGTTTCGAATTGCAACTATTCCATATAAGTTTTGTGATAATATATTCATGTCAGAGGCGTATCCAGGATTTTGAGATGATGGATCCACTATAATATAAAGGTTGATTTATGATATAAATTTTATCGGTTCGACATTTAGGTTTTTACTACTAAAAACCGTTAAAATTTTAAAATTATAGGTCTAAAATTAATTCTTATATACCAATTACCACTTAGAGAAGTATTATCTAATTTAGAAAGAAAAATAAAACAAGATAA</genome_strand>
        <mrna_strand>TTACCTTTTCTTACCTTCCTTTTTCCTTTTTCACCTTTATTTATTTTGTATTTTTATTTTCAAATTAAAAAACACAAATTATTTCTAAAAAAAAAAAAGTCATTTCTATTTCTCTTTTTTTTTTCTCTTCTCTAAACCCTAAATATATATTTTCTTTTTCTCTTCCATCTTGACAATTTCCAATTTACG........................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTTGGGGGGAAAAATCGATGAAAAATGTCGGTAACTGAGGCAGGTAGTGGAGTAATGACGAGTAGAGATCATTTCAGTGTTGCCGGAGTTCAAAATTCTCCGTCGAATGTTCCGGCAACGACGCCGGTGGTTCAGAATATGCATTTGGGTTACAGAGATGAAAATACGGCTGTGTTTGCCCCGCCACCGTACCAGTCGGCTGAAGGTTCTGCCGGAGCTGGGACATCGATGTTGCAGAACTTGAACAATAATTCGTCGGAGCCGATGAAACGGAAGAGAGGGAGGCCTAGGAAATACGGTCCGGATGGGTCTATGGCATTGGGATTGAATCCGGCTGCTTCGCCGGTTGGTGGTGGTTCTCTTGGCGGTAGCTTGTCGCCCCGAGATCCGGGTAATTCTGCTGGTGCTCAGATGCATTCTGGAGGACCAGGTTCGCCAAATTCGTCGAAGAAAGGTAGAGGGAGACCTCCTGGATCCGGCAAAAAAACAGCAAATGGACAATCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACAGGATTTGGATTCACACCACATATTATCGCTGTGAAACCAGGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGCATATAAAATAATGTCGTTTTCTCAGAATGGTCCAAGGGCTGTGTGCATCTTATCTGCCAGTGGTGCAATATCATATGTGACTCTTAAACAAACTGCCACGTCCGGTGGAACGGCAACATATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGGTTTGAGATTTTGTCTCTCTCTGGTTCATTTATGCTGTCTGACATTGGTGGTCAACAAAGCAGAACAGGTGGATTAAGTGTATCATTAGCTGGATCTGATGGACGGATTTTAGGCGGTTGTGTGGCGGGTGTTCTAACAGCCGCATCACCAGTCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCGTAGGTAGCTTCATTGCAGATGGTCGGAAAGAGCCAAAAACATCAAACCATTTTGAGGTTTTACCTGCTCCGTTGAATGCCAATCTTGGTGTTGGTGGTGGTTTGACAGGGGCCAATAGCCCACCATCACGAGGCACTTATAGTGAATCATCTGGTGGACCAGGCAGCCCCATAAATCAGAGGGGTCCAGTATGCACCAACGATAACCTGCAAGGAATCTCAAGCATGCCTTGGAAATGAGTTATTAACGCTCTCTTTTCTGACCAATTGAACTCCGTGTCATCGACTAGTTCACTGAAGAAGACTCCAAGTGAGGATTGTTGTAATTTTAATCGGTGTAATCGTAGTTGTGCAGAAATAAGGTTCACAGACACTTCTTACCTCAAGTTCAAGAACTGGTGAGAAACGTCGATTTGCTGATGCGTAGTTGTTCTGCATTTTCTGTCTTGTTGATTTAATTTCTTGTATTTCATCAGTCATAGGACATGGTTTGGCTTTTTTTGTTCTATCTAGTAATCACTTACTCATATTAGCCATCTTCCAACTTTAGAGTGTATTTTATTGCAATTCTGTGATCTAGAATAATATCAATTATGTACTTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScWm5V/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344695" ref_strand="+" ref_description="SGN-U344695        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | oxygen-evolving complex-related, SP:Q9S720; contains a PsbP domain | chr1:28689465-28691614 FORWARD | Aliases: F15M4.5(evalue: 8e-37, score=150) genbank/nr: gi|18411110|ref|NP_565131.1| oxygen-evolving complex-23 related protein [Arabidopsis thaliana] gi|18203439|sp|Q9S720|THL1_ARATH Unknown thylakoid lumen protein, chloroplast precursor gi|32815945|gb|AAP88357.1| At1g76450 [Arabidopsis thaliana](evalue: 5e-35, score=150)">
      <seq>tcatcttcatcttcatcttcatcttcatctccatgtttgaaccagtaccagtatcaagctattcttcgcttgccacgtgtccctttaatttcctctcatcttcttaaagttcccaagaaaaatcgaaactcacttattttctgctgcaacaacactgtgcctgattcaagaacaggtgagcaagttaaaggagaatgcttaaccaagagaagagagctcctgctacaggcaggctctgttgcattttctctgtccgcctttacatcgattgcattggcagagaaggatgtcccggaggagtttcgtgtttattcagatgatgtcaacaagtttaagatcatgatacctagtgattggcaaataggcgcgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165F06-ONpAy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0165F06.1" temp_strand="+" temp_description="C12HBa0165F06.1  AC216399.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0165F06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="39235" stop="41098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39535" g_stop="39643" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39644" i_stop="39719" i_length="76">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39720" g_stop="39786" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="176" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39787" i_stop="40532" i_length="746">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40533" g_stop="40642" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="286" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40643" i_stop="40726" i_length="84">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.029" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40727" g_stop="40792" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="352" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165F06.1" gen_strand="+" ref_id="SGN-U344695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39535" e_stop="39643"/>
          <exon e_start="39720" e_stop="39786"/>
          <exon e_start="40533" e_stop="40642"/>
          <exon e_start="40727" e_stop="40792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCATCTTCATCTTCATCTTCATCTCCATGTTTGAACCAGTACCAGTATCAAGCTATTCTTCGCTTGCCACGTGTCCCTTTAATTTCCTCTCATCTTCTTAAAGGTTCAATTTTTACTTCTTTATCTTAGTAAATTTTTACATATATCAACTAATTTTATTTTATTTTTCGCTTGTTTAGTTCCCAAGAAAAATCGAAACTCACTTATTTTCTGCTGCAACAACACTGTGCCTGATTCAAGAACAGGGTAATTTTTTTTTATTCGAATTTTACCCAATGTAACAATAAAGTCGCTAAATTTTACTCAATACAACAATAAAGTCAACTATTTTGTTGATAATTGTAGTGTCTGAGTTTGCTTGCGTGCATTATGAAGCATAATTGCTACCACTTTACTCAACGTTGTAGTAAAGTGATATTTGTTTTATAGTCGTGTTGTTCAGGCCAGCTTATCGTCACCTTGATTTTTTTTTAATTTTATAATGGTGTTGTTTATGCTAAGATAATATGCACTTCAATCCCACTAACACAGGTACGGTGTAACTCTATCTGTTAAAGTTGGGGCAGATGAGAAGAAATCACTTAGTGTTTCGCGAGATAAATTTTGTTGATAATACACAAATTGTTTTAAATTTTTTCATTATAGTGATTAGAGGGTAAAAATATGTGACTTTATTGATATAGTGGATAAAACTCAGTAATTTTAATTGACAATATATTTGTGTTTTTAGTGTTATAGACTATGGTAGCTAAAAATTCAGTTAGTTTGATGTGTTAAGGATAAATTTGTGTGTTTGTTGTTATCGTTAGTAAAGTTTTGTGATCATACGACGAAATTATCCTTATCTTTTTTTTTCTTTTTGTGTGTTTTATTTCGTTCGGTTACCATGAACTGTTGTCAATTTTCGATCAGCTAGATCGATTATCAGAGCACATTTGTGAATTTCTTCTTTGTTTACCTCATTTGATTCTAAAACTCGAATATTTGGATAGTGAGCAAGTTAAAGGAGAATGCTTAACCAAGAGAAGAGAGCTCCTGCTACAGGCAGGCTCTGTTGCATTTTCTCTGTCCGCCTTTACATCGATTGCATTGGCAGAGAAGGGTACACGTTGATTAATTTTTCGACTTTGACATGCTCAGTATCCTTCAAAATGTCTACTTGCTAAAAAGAGTGATGTTATTTCAGATGTCCCGGAGGAGTTTCGTGTTTATTCAGATGATGTCAACAAGTTTAAGATCATGATACCTAGTG</genome_strand>
        <mrna_strand>TCATCTTCATCTTCATCTTCATCTTCATCTCCATGTTTGAACCAGTACCAGTATCAAGCTATTCTTCGCTTGCCACGTGTCCCTTTAATTTCCTCTCATCTTCTTAAAG............................................................................TTCCCAAGAAAAATCGAAACTCACTTATTTTCTGCTGCAACAACACTGTGCCTGATTCAAGAACAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAAGTTAAAGGAGAATGCTTAACCAAGAGAAGAGAGCTCCTGCTACAGGCAGGCTCTGTTGCATTTTCTCTGTCCGCCTTTACATCGATTGCATTGGCAGAGAAGG....................................................................................ATGTCCCGGAGGAGTTTCGTGTTTATTCAGATGATGTCAACAAGTTTAAGATCATGATACCTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ScWm5V/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325341" ref_strand="+" ref_description="SGN-U325341        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | oxygen-evolving complex-related, SP:Q9S720; contains a PsbP domain | chr1:28689465-28691614 FORWARD | Aliases: F15M4.5(evalue: 7e-51, score=196) genbank/nr: gi|21537211|gb|AAM61552.1| thylakoid lumen protein, chloroplast precursor [Arabidopsis thaliana](evalue: 3e-49, score=197)">
      <seq>gaaggtgatggagtaaggtcactcttagctttctatcctccagaagcttctaactcaaatgtcagcatagtaatcacaagccttggtgctgatttcaccaagttggaatctttcgggaaagttgatgcttttgctgagaatctggtcagcggatttgatagaagctggcaaaggcctccgggagtgaaagcaaaactcatagatagcaaagcttctaaagggttgtattacatcgagtacactctccaaaatcccggtgaaagtctcagacatctattttcagtgcttgggatagcaaacaatgggatttacaacagactgtatactctcactggacagtttgtagacgaggaggcagagaaatatggtgccaaaatacagaaggctgtttcttctttcagattaatatgatgacatgaacagagagcgcgatatcgcaaattttggcttgagcttctggtttttctcgtttggtgaatggtaaacataattgagagcgcgatatcacagattcaagttctggttaaggtatattatgacgactcgagaaaaaactggagttgtaagtatgaactagcaacttgatcaatgttagagttagtatttgcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165F06-ONpAy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0165F06.1" temp_strand="-" temp_description="C12HBa0165F06.1  AC216399.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0165F06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="79559" stop="76864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79259" g_stop="79199" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79198" i_stop="79112" i_length="87">
            <donor d_prob="0.251" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79111" g_stop="79029" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="144" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79028" i_stop="78926" i_length="103">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78925" g_stop="78850" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="220" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78849" i_stop="78483" i_length="367">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78482" g_stop="78364" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="339" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78363" i_stop="78239" i_length="125">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78238" g_stop="78194" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="384" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78193" i_stop="77393" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77392" g_stop="77167" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="610" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77166" i_stop="77015" i_length="152">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77014" g_stop="77004" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="621" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165F06.1" gen_strand="-" ref_id="SGN-U325341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79259" e_stop="79199"/>
          <exon e_start="79111" e_stop="79029"/>
          <exon e_start="78925" e_stop="78850"/>
          <exon e_start="78482" e_stop="78364"/>
          <exon e_start="78238" e_stop="78194"/>
          <exon e_start="77392" e_stop="77167"/>
          <exon e_start="77014" e_stop="77004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTGATGGAGTAAGGTCACTCTTAGCTTTCTATCCTCCAGAAGCTTCTAACTCAAATGGTATTAGTTGGACATTAGTGATGGATCGATTCATTTGAGCTTTATTACATTGTTGTGTATATTAACTCGATCATCATGTTGTTTCAGTCAGCATAGTAATCACAAGCCTTGGTGCTGATTTCACCAAGTTGGAATCTTTCGGGAAAGTTGATGCTTTTGCTGAGAATCTGGTGCGTCTTAATCCATCCCTATTATGAAAGAAACTCTCCGTTCCTTCTTCTTTTTTTTATTTTAATTCACGTTCTTACTTCGGCCCTCAATGATTTTTAACAGGTCAGCGGATTTGATAGAAGCTGGCAAAGGCCTCCGGGAGTGAAAGCAAAACTCATAGATAGCAAAGCTTCTAAAGGTATATAAGACTATCGAAAGTCACTTGCTAAACTTGCCTCGATGCAATGGTTATCTGAGGTTTACATATAAATCGAACAGTGTGTTTATAAAGCCATGAAATGAATGCATACTATTGTACCTACACAATTAGAAAGTGCTTTTATGAAATGATTTTCGACGAGTCAAGAAGAAAAGCTCTCATTCCTAGAATTTAGAACACGTAAATTTAAAATCCTGCATCTGTCTCTGTCATTAAGAAACTAAGTGATTTTATCTCACTGAAGTAGTTGTAACTTTGCTTCAACGCTTAGGAGTTTATACTTGCACATGATGTGAGGACGTTTAATTTTTTAAGCCGTTTAATAATTGTCACTCTTATTAATCAGGGTTGTATTACATCGAGTACACTCTCCAAAATCCCGGTGAAAGTCTCAGACATCTATTTTCAGTGCTTGGGATAGCAAACAATGGGATTTACAACAGACTGTATACTCTCACTGGACAGGTCAGCTAAACGAAGCAAAAATACATGCATTAAACTTACTTGGCTTTTCAATTTTCCATTACGAGAGGATGATGATGAAGAGACGATAGACTGTAAAATTGATTAAGATTTGATTTATCTCGCAGTTTGTAGACGAGGAGGCAGAGAAATATGGTGCCAAAATACAGAAGGTAAGTTTAAGTTCATTTTCTTCTTGTTTTGTGTGTGCTAGTTTTTTGAGTGAAGATATGCATCACAAAAATGTCTATAGTATCTCAAAAGAAAGCCTCCCTCGTGGATTAGGAAGAACTCTCTTTTTCGTTATAAGGAATTGTAAACTTCGACAGCTTTGTAAAAAGATATAGAAGAAAAAAGAAATATGTGCTTATACATATGAGAAACGGGATTGAAGGCGAAAGAGGTGGATTTGCCCCTCTTCCCCTGCACGCGAGATATATATCATATATGAGGCCTAATCCAGTTCTGATTCTTCTTTTCTTTCTAAGCTTGTGAGTAATTTTGAATCCTGGATTCCATAATCCTTTCCCGAACCAAACATGAATCTATGCATTCATTTGTCTCTCACGAGACAGTGTCATCAAGGACACACCTCAAGCTAGAAGAAGCTTTCTGTGATTATATTATACAGTTTCTGTGATATGTTGAAGTAAGTTGCATCACATTTCATATATATTAACTCTGTATATGTATAATTAGAAGTTGTCTTCAGCAGAAATTGTCAAGTTTTTGCAAAATGTTGTGTAGCTTGACGGATATATTTTCACAGTTTACCTATACATACACGTCAATCTCCTTTCTAAGCCTGTTTAGTATCCCGGATTGAGTTAGATCACCATGTTAAGTGATGAAAGACGGAAAAACCTGAGTGCACTGATCTCAACTGTTGAACGTTTTCACGATTTCTTAAGAAAATGTTCATTGTCTATTCCACATGATTGGAATCAATGTCTGAAGTTTCTTGCAATGTGCAGGCTGTTTCTTCTTTCAGATTAATATGATGACATGAACAGAGAGCGCGATATCGCAAATTTTGGCTTGAGCTTCTGGTTTTTCTCGTTTGGTGAATGGTAAACATAATTGAGAGCGCGATATCACAGATTCAAGTTCTGGTTAAGGTATATTATGACGACTCGAGAAAAAACTGGAGTTGTAAGTATGAACTAGCAACTTGATCAATGTTAGAGTTAGTATTTGCATATATCGTTATATACCAAAACTGTATCGATTTTTTGATAAAAATATGACCTTAGTGCAAATAATTTGATGCTCAAGTTTTGATTATATATTTGTACTCTACTCAGGACCTTAAATCGGTTATTTGAGCTTTATTGTCATCTTCCTTTGTGAAGCAATAAATACA</genome_strand>
        <mrna_strand>GAAGGTGATGGAGTAAGGTCACTCTTAGCTTTCTATCCTCCAGAAGCTTCTAACTCAAATG.......................................................................................TCAGCATAGTAATCACAAGCCTTGGTGCTGATTTCACCAAGTTGGAATCTTTCGGGAAAGTTGATGCTTTTGCTGAGAATCTG.......................................................................................................GTCAGCGGATTTGATAGAAGCTGGCAAAGGCCTCCGGGAGTGAAAGCAAAACTCATAGATAGCAAAGCTTCTAAAG...............................................................................................................................................................................................................................................................................................................................................................................GGTTGTATTACATCGAGTACACTCTCCAAAATCCCGGTGAAAGTCTCAGACATCTATTTTCAGTGCTTGGGATAGCAAACAATGGGATTTACAACAGACTGTATACTCTCACTGGACAG.............................................................................................................................TTTGTAGACGAGGAGGCAGAGAAATATGGTGCCAAAATACAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTTCTTCTTTCAGATTAATATGATGACATGAACAGAGAGCGCGATATCGCAAATTTTGGCTTGAGCTTCTGGTTTTTCTCGTTTGGTGAATGGTAAACATAATTGAGAGCGCGATATCACAGATTCAAGTTCTGGTTAAGGTATATTATGACGACTCGAGAAAAAACTGGAGTTGTAAGTATGAACTAGCAACTTGATCAATGTTAGAGTTAGTATTTGCAT........................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2853" PGL_stop="1818"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2853" e_stop="2817"/>
            <exon e_start="2149" e_stop="1818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="0.973"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="2853" e_stop="2817" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="2816" i_stop="2150" i_length="667"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="2149" e_stop="1818" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2853" stop="2817"/>
              <exon start="2149" stop="1818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGAAGCAATTTATCGATAAGCCATGCTTTTACTAG : CTGCAAGTGCAATATTCGTTAATGCTGAGAGGAGAAGGCTAATTAATTTGATTCCGGACAGCGTGAGGAAAGCATGGAAAGATTGGGAAATAGAAGTGCTGATTCTAGGAAGCCTCATCTTACAGATTATGCTTATTCTTTTTGGCAAACGCAGGCAGTGTGTGGCGAATTTATGGATCAGAATGACTCTATGGACATCTTACTTACTAGCAGATTGGATTGCTATTGTTTCATTAGGTATCATTGCTCAGAATACGTTGGATAAATGCAAACAAACAAGTGATGATGACAATTTCAAGGATGAATTGATGTCGTTCTGGGCGCCATTTATG</gDNA_template>
            <first_frame> W  E  A  I  Y  R  *  A  M  L  L  L   : A  A  S  A  I  F  V  N  A  E  R  R  R  L  I  N  L  I  P  D  S  V  R  K  A  W  K  D  W  E  I  E  V  L  I  L  G  S  L  I  L  Q  I  M  L  I  L  F  G  K  R  R  Q  C  V  A  N  L  W  I  R  M  T  L  W  T  S  Y  L  L  A  D  W  I  A  I  V  S  L  G  I  I  A  Q  N  T  L  D  K  C  K  Q  T  S  D  D  D  N  F  K  D  E  L  M  S  F  W  A  P  F  M </first_frame>
            <second_frame>  G  K  Q  F  I  D  K  P  C  F  Y  *  :  L  Q  V  Q  Y  S  L  M  L  R  G  E  G  *  L  I  *  F  R  T  A  *  G  K  H  G  K  I  G  K  *  K  C  *  F  *  E  A  S  S  Y  R  L  C  L  F  F  L  A  N  A  G  S  V  W  R  I  Y  G  S  E  *  L  Y  G  H  L  T  Y  *  Q  I  G  L  L  L  F  H  *  V  S  L  L  R  I  R  W  I  N  A  N  K  Q  V  M  M  T  I  S  R  M  N  *  C  R  S  G  R  H  L   </second_frame>
            <third_frame>   G  S  N  L  S  I  S  H  A  F  T  S :   C  K  C  N  I  R  *  C  *  E  E  K  A  N  *  F  D  S  G  Q  R  E  E  S  M  E  R  L  G  N  R  S  A  D  S  R  K  P  H  L  T  D  Y  A  Y  S  F  W  Q  T  Q  A  V  C  G  E  F  M  D  Q  N  D  S  M  D  I  L  L  T  S  R  L  D  C  Y  C  F  I  R  Y  H  C  S  E  Y  V  G  *  M  Q  T  N  K  *  *  *  Q  F  Q  G  *  I  D  V  V  L  G  A  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165F06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2832" stop="2817"/>
                    <exon start="2149" stop="1818"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMLLLAASAIFVNAERRRLINLIPDSVRKAWKDWEIEVLILGSLILQIMLILFGKRRQCVANLWIRMTLWTSYLLADWIAIVSLGIIAQNTLDKCKQTSDDDNFKDELMSFWAPFM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="3928" PGL_stop="3691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3928" e_stop="3691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="3928" e_stop="3691" e_length="238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3928" stop="3691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339883" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTACCATTCATCATCGATTATCACATTCAATCTTTTGATGCTAACCAGTAGTTAGCTACTGGGTAAGCAATGCTTCAATAATTTGCACTTCAGTTTCACCTGATGCATTAGTTATGTATTTTAATTCTACTCAATGAGGCCCTTATTATCCTCTGTAACAATTTTAAATTTTGATGTGATTCACCTGTAATTTCTAATATATACAGAACTTTCTCGTGCTTGATATTGAAACAACA</gDNA_template>
            <first_frame> C  Y  H  S  S  S  I  I  T  F  N  L  L  M  L  T  S  S  *  L  L  G  K  Q  C  F  N  N  L  H  F  S  F  T  *  C  I  S  Y  V  F  *  F  Y  S  M  R  P  L  L  S  S  V  T  I  L  N  F  D  V  I  H  L  *  F  L  I  Y  T  E  L  S  R  A  *  Y  *  N  N  </first_frame>
            <second_frame>  V  T  I  H  H  R  L  S  H  S  I  F  *  C  *  P  V  V  S  Y  W  V  S  N  A  S  I  I  C  T  S  V  S  P  D  A  L  V  M  Y  F  N  S  T  Q  *  G  P  Y  Y  P  L  *  Q  F  *  I  L  M  *  F  T  C  N  F  *  Y  I  Q  N  F  L  V  L  D  I  E  T  T </second_frame>
            <third_frame>   L  P  F  I  I  D  Y  H  I  Q  S  F  D  A  N  Q  *  L  A  T  G  *  A  M  L  Q  *  F  A  L  Q  F  H  L  M  H  *  L  C  I  L  I  L  L  N  E  A  L  I  I  L  C  N  N  F  K  F  *  C  D  S  P  V  I  S  N  I  Y  R  T  F  S  C  L  I  L  K  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0165F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="19092" PGL_stop="21273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19092" e_stop="19424"/>
            <exon e_start="19849" e_stop="19884"/>
            <exon e_start="20121" e_stop="20308"/>
            <exon e_start="20530" e_stop="20719"/>
            <exon e_start="20975" e_stop="21273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="0.982"/>
          <exon-intron don_prob="0.953" acc_prob="0.975" e_score="0.972"/>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="0.995"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="19092" e_stop="19424" e_length="333"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="19425" i_stop="19848" i_length="424"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="19849" e_stop="19884" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.975">
            <gDNA_intron_boundary i_start="19885" i_stop="20120" i_length="236"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="20121" e_stop="20308" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="20309" i_stop="20529" i_length="221"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="20530" e_stop="20719" e_length="190"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20720" i_stop="20974" i_length="255"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="20975" e_stop="21273" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19092" stop="19424"/>
              <exon start="19849" stop="19884"/>
              <exon start="20121" stop="20308"/>
              <exon start="20530" stop="20719"/>
              <exon start="20975" stop="21273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAAACTATCTTTCTCTCTCTCTCTCTCTCCTTAGCTCCATTTATATCTTGCATATTTTTTTTTTGATTCCTCCTATATATATCATTACTATTTTTATTTTTATTTTTTTTGTAATTGTGTAATCAACAAATGATTTTCTAGCTGAAATTTGAGGTGTTATTATTCTAATTTCTTGAAATCTTTTGCATTTGTTTTGGAAATACTTGGCCAAAGATTTCAATGTTGAAAAAAAATAAAAATAAAATGAGTTGTTTTTCTTGCATGAGCTCTCGTCCTAAGATTATTGAAGATTATGATGAAGACATGACCTCAAGATCCAACAATTCTGCAG : TCCACGCGAGGGGGAATTCTAGTGATTCAGGAAGTG : GAAATGGGAGAAAGGAAGGCTTTTTTAGAAGTAAAAAAAGTGGGGAAAGTAACAATCAGAACAACAATGTAGCTCGGAGTTTCGCGTTCAAGGAACTAGCCATCGCGACTCAGAGTTTTAGGGAAACAAATCTTATTGGCGAAGGCGGCTTTGGAAGTGTCTATAAAGGCCGTATAGATTCAGGCCAG : ATAGTCGCGATCAAACAACTTAATCTCGAAGGCCTTCAAGGGAACCAAGAATTTGTTGTGGAGGTACTTATGTTGAGTTTAATGCATCATAACAATCTTGTCAATCTGATCGGATACTGCACTCACGGAGAACAGAGGTTGTTGGTTTACGAGTTTATGCCACTAGGCAGCCTGGAAAACCATCTTTTCG : ATTTAGAACCAGGAACGACGCCACTGAGTTGGAAGACAAGGCTAAAGATAGCCGCAGGTGCAGCTCATGGACTCGAGTATCTACACAAAGCAAATCCACCCGTCATCTACCGTGATTTGAAATCTTCAAATATATTATTGGACAATGATTTCAATCCAAAGCTGTCGGATTTTGGACTTGCAAAACTTGGACCGGTAGGTGACAACACTCATGTTTCGACAAGAGTGATGGGAACCTACGGATATTGTGCCCCCGAGTATGCCATGACTGGGAAGTTGACTCTGAAATCTGATATCTAT</gDNA_template>
            <first_frame> N  K  L  S  F  S  L  S  L  S  P  *  L  H  L  Y  L  A  Y  F  F  F  D  S  S  Y  I  Y  H  Y  Y  F  Y  F  Y  F  F  C  N  C  V  I  N  K  *  F  S  S  *  N  L  R  C  Y  Y  S  N  F  L  K  S  F  A  F  V  L  E  I  L  G  Q  R  F  Q  C  *  K  K  I  K  I  K  *  V  V  F  L  A  *  A  L  V  L  R  L  L  K  I  M  M  K  T  *  P  Q  D  P  T  I  L  Q  :  S  T  R  G  G  I  L  V  I  Q  E  V  :  E  M  G  E  R  K  A  F  L  E  V  K  K  V  G  K  V  T  I  R  T  T  M  *  L  G  V  S  R  S  R  N  *  P  S  R  L  R  V  L  G  K  Q  I  L  L  A  K  A  A  L  E  V  S  I  K  A  V  *  I  Q  A  R :   *  S  R  S  N  N  L  I  S  K  A  F  K  G  T  K  N  L  L  W  R  Y  L  C  *  V  *  C  I  I  T  I  L  S  I  *  S  D  T  A  L  T  E  N  R  G  C  W  F  T  S  L  C  H  *  A  A  W  K  T  I  F  S  :  I  *  N  Q  E  R  R  H  *  V  G  R  Q  G  *  R  *  P  Q  V  Q  L  M  D  S  S  I  Y  T  K  Q  I  H  P  S  S  T  V  I  *  N  L  Q  I  Y  Y  W  T  M  I  S  I  Q  S  C  R  I  L  D  L  Q  N  L  D  R  *  V  T  T  L  M  F  R  Q  E  *  W  E  P  T  D  I  V  P  P  S  M  P  *  L  G  S  *  L  *  N  L  I  S   </first_frame>
            <second_frame>  I  N  Y  L  S  L  S  L  S  L  L  S  S  I  Y  I  L  H  I  F  F  L  I  P  P  I  Y  I  I  T  I  F  I  F  I  F  F  V  I  V  *  S  T  N  D  F  L  A  E  I  *  G  V  I  I  L  I  S  *  N  L  L  H  L  F  W  K  Y  L  A  K  D  F  N  V  E  K  K  *  K  *  N  E  L  F  F  L  H  E  L  S  S  *  D  Y  *  R  L  *  *  R  H  D  L  K  I  Q  Q  F  C  S :   P  R  E  G  E  F  *  *  F  R  K  W :   K  W  E  K  G  R  L  F  *  K  *  K  K  W  G  K  *  Q  S  E  Q  Q  C  S  S  E  F  R  V  Q  G  T  S  H  R  D  S  E  F  *  G  N  K  S  Y  W  R  R  R  L  W  K  C  L  *  R  P  Y  R  F  R  P   : D  S  R  D  Q  T  T  *  S  R  R  P  S  R  E  P  R  I  C  C  G  G  T  Y  V  E  F  N  A  S  *  Q  S  C  Q  S  D  R  I  L  H  S  R  R  T  E  V  V  G  L  R  V  Y  A  T  R  Q  P  G  K  P  S  F  R :   F  R  T  R  N  D  A  T  E  L  E  D  K  A  K  D  S  R  R  C  S  S  W  T  R  V  S  T  Q  S  K  S  T  R  H  L  P  *  F  E  I  F  K  Y  I  I  G  Q  *  F  Q  S  K  A  V  G  F  W  T  C  K  T  W  T  G  R  *  Q  H  S  C  F  D  K  S  D  G  N  L  R  I  L  C  P  R  V  C  H  D  W  E  V  D  S  E  I  *  Y  L  </second_frame>
            <third_frame>   *  T  I  F  L  S  L  S  L  S  L  A  P  F  I  S  C  I  F  F  F  *  F  L  L  Y  I  S  L  L  F  L  F  L  F  F  L  *  L  C  N  Q  Q  M  I  F  *  L  K  F  E  V  L  L  F  *  F  L  E  I  F  C  I  C  F  G  N  T  W  P  K  I  S  M  L  K  K  N  K  N  K  M  S  C  F  S  C  M  S  S  R  P  K  I  I  E  D  Y  D  E  D  M  T  S  R  S  N  N  S  A   : V  H  A  R  G  N  S  S  D  S  G  S   : G  N  G  R  K  E  G  F  F  R  S  K  K  S  G  E  S  N  N  Q  N  N  N  V  A  R  S  F  A  F  K  E  L  A  I  A  T  Q  S  F  R  E  T  N  L  I  G  E  G  G  F  G  S  V  Y  K  G  R  I  D  S  G  Q  :  I  V  A  I  K  Q  L  N  L  E  G  L  Q  G  N  Q  E  F  V  V  E  V  L  M  L  S  L  M  H  H  N  N  L  V  N  L  I  G  Y  C  T  H  G  E  Q  R  L  L  V  Y  E  F  M  P  L  G  S  L  E  N  H  L  F   : D  L  E  P  G  T  T  P  L  S  W  K  T  R  L  K  I  A  A  G  A  A  H  G  L  E  Y  L  H  K  A  N  P  P  V  I  Y  R  D  L  K  S  S  N  I  L  L  D  N  D  F  N  P  K  L  S  D  F  G  L  A  K  L  G  P  V  G  D  N  T  H  V  S  T  R  V  M  G  T  Y  G  Y  C  A  P  E  Y  A  M  T  G  K  L  T  L  K  S  D  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165F06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19262" stop="19424"/>
                    <exon start="19849" stop="19884"/>
                    <exon start="20121" stop="20308"/>
                    <exon start="20530" stop="20719"/>
                    <exon start="20975" stop="21273"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLEIFCICFGNTWPKISMLKKNKNKMSCFSCMSSRPKIIEDYDEDMTSRSNNSAVHARGNSSDSGSGNGRKEGFFRSKKSGESNNQNNNVARSFAFKELAIATQSFRETNLIGEGGFGSVYKGRIDSGQIVAIKQLNLEGLQGNQEFVVEVLMLSLMHHNNLVNLIGYCTHGEQRLLVYEFMPLGSLENHLFDLEPGTTPLSWKTRLKIAAGAAHGLEYLHKANPPVIYRDLKSSNILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGKLTLKSDIY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="21783" PGL_stop="23058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21783" e_stop="22229"/>
            <exon e_start="22752" e_stop="23058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.812" e_score="0.971"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="21783" e_stop="22229" e_length="447"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.812">
            <gDNA_intron_boundary i_start="22230" i_stop="22751" i_length="522"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="22752" e_stop="23058" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21783" stop="22229"/>
              <exon start="22752" stop="23058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341066" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTAATCCTTTCCTTAAGGACCGGAGGAAATACATTCATTTGGTGGATCCGATGTTGGATGGTCAATTCTCTTCGCGTTGTTTGCACCATGCAGTTGCTGTTACTGCAATGTGTCTTCAAGAACAAGCCAGTTTTCGCCCCAGCATTACTGATATTGTTACCGCGCTTGACTATCTTCTACTTCAAGCACAACATTCAGGTACAAGTAGAGGTGGTTCACAATCTGACAAGCACATACCGCCTCCATCAACAGAAGAGTTCAATGTCAGTTCACGAAATCGAAGCTATGACAACATGGCTATTACATTTTAAATTTTTTCCGTCTGAACAAACTGCTAGATATATAGAGATGGGGATCGTGGAATATCACAGATGAAAATGGAGGTGCATTTTATTGTTTCAACGTTGTAGCAGAGGATATCGGTCACTTCAGCTTTTGATTATGAG : ATGACGTTTTCTTGAATCAAGAACTTCAGTTGATTTGCAGGAACGCGGTAGACTGCTCTTTTCCCTGTACATTGACTACTCATAATTCGTAATCAGTTGAGGAACCATTGAATATTGTTTCAAATATCTGTATATTTTGGTGTATGTGAAAAAACACAAACCAAAGAAATGGATGTATATCAACGTCAAGATTGTATACATACACCCATACTTCTTGTAATTTCATGCATATTGTTGACATGATCATATAAGATAATATGAACAATAGTGAAGACATGTTGTTGTTCGATTATCTTCTAATTTTAAA</gDNA_template>
            <first_frame> S  N  P  F  L  K  D  R  R  K  Y  I  H  L  V  D  P  M  L  D  G  Q  F  S  S  R  C  L  H  H  A  V  A  V  T  A  M  C  L  Q  E  Q  A  S  F  R  P  S  I  T  D  I  V  T  A  L  D  Y  L  L  L  Q  A  Q  H  S  G  T  S  R  G  G  S  Q  S  D  K  H  I  P  P  P  S  T  E  E  F  N  V  S  S  R  N  R  S  Y  D  N  M  A  I  T  F  *  I  F  S  V  *  T  N  C  *  I  Y  R  D  G  D  R  G  I  S  Q  M  K  M  E  V  H  F  I  V  S  T  L  *  Q  R  I  S  V  T  S  A  F  D  Y  E  :  M  T  F  S  *  I  K  N  F  S  *  F  A  G  T  R  *  T  A  L  F  P  V  H  *  L  L  I  I  R  N  Q  L  R  N  H  *  I  L  F  Q  I  S  V  Y  F  G  V  C  E  K  T  Q  T  K  E  M  D  V  Y  Q  R  Q  D  C  I  H  T  P  I  L  L  V  I  S  C  I  L  L  T  *  S  Y  K  I  I  *  T  I  V  K  T  C  C  C  S  I  I  F  *  F  *  </first_frame>
            <second_frame>  L  I  L  S  L  R  T  G  G  N  T  F  I  W  W  I  R  C  W  M  V  N  S  L  R  V  V  C  T  M  Q  L  L  L  L  Q  C  V  F  K  N  K  P  V  F  A  P  A  L  L  I  L  L  P  R  L  T  I  F  Y  F  K  H  N  I  Q  V  Q  V  E  V  V  H  N  L  T  S  T  Y  R  L  H  Q  Q  K  S  S  M  S  V  H  E  I  E  A  M  T  T  W  L  L  H  F  K  F  F  P  S  E  Q  T  A  R  Y  I  E  M  G  I  V  E  Y  H  R  *  K  W  R  C  I  L  L  F  Q  R  C  S  R  G  Y  R  S  L  Q  L  L  I  M  R :   *  R  F  L  E  S  R  T  S  V  D  L  Q  E  R  G  R  L  L  F  S  L  Y  I  D  Y  S  *  F  V  I  S  *  G  T  I  E  Y  C  F  K  Y  L  Y  I  L  V  Y  V  K  K  H  K  P  K  K  W  M  Y  I  N  V  K  I  V  Y  I  H  P  Y  F  L  *  F  H  A  Y  C  *  H  D  H  I  R  *  Y  E  Q  *  *  R  H  V  V  V  R  L  S  S  N  F  K </second_frame>
            <third_frame>   *  S  F  P  *  G  P  E  E  I  H  S  F  G  G  S  D  V  G  W  S  I  L  F  A  L  F  A  P  C  S  C  C  Y  C  N  V  S  S  R  T  S  Q  F  S  P  Q  H  Y  *  Y  C  Y  R  A  *  L  S  S  T  S  S  T  T  F  R  Y  K  *  R  W  F  T  I  *  Q  A  H  T  A  S  I  N  R  R  V  Q  C  Q  F  T  K  S  K  L  *  Q  H  G  Y  Y  I  L  N  F  F  R  L  N  K  L  L  D  I  *  R  W  G  S  W  N  I  T  D  E  N  G  G  A  F  Y  C  F  N  V  V  A  E  D  I  G  H  F  S  F  *  L  *   : D  D  V  F  L  N  Q  E  L  Q  L  I  C  R  N  A  V  D  C  S  F  P  C  T  L  T  T  H  N  S  *  S  V  E  E  P  L  N  I  V  S  N  I  C  I  F  W  C  M  *  K  N  T  N  Q  R  N  G  C  I  S  T  S  R  L  Y  T  Y  T  H  T  S  C  N  F  M  H  I  V  D  M  I  I  *  D  N  M  N  N  S  E  D  M  L  L  F  D  Y  L  L  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165F06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21784" stop="22158"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILSLRTGGNTFIWWIRCWMVNSLRVVCTMQLLLLQCVFKNKPVFAPALLILLPRLTIFYFKHNIQVQVEVVHNLTSTYRLHQQKSSMSVHEIEAMTTWLLHFKFFPSEQTARYIEMGIVEYHR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165F06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21783" stop="22094"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNPFLKDRRKYIHLVDPMLDGQFSSRCLHHAVAVTAMCLQEQASFRPSITDIVTALDYLLLQAQHSGTSRGGSQSDKHIPPPSTEEFNVSSRNRSYDNMAITF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29148" PGL_stop="30404"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29148" e_stop="29637"/>
            <exon e_start="30365" e_stop="30404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.987" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="29148" e_stop="29637" e_length="490"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.987">
            <gDNA_intron_boundary i_start="29638" i_stop="30364" i_length="727"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30365" e_stop="30404" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29148" stop="29637"/>
              <exon start="30365" stop="30404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346649" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTAATTCCTACAAAACAAAAATAAAAATGGCTTCCAAATTCTCATTTCTTATCCTATTTCCCATTTTATTACTTTCTCTCATCATGTCACGCCGCAACATTTGCGCGTGACTTCTCCATCGTGGGATATTCCCCCGATGACTTGAATAGCATCGATAACATCATCAATCTCTTCGAGACGTGGATGGAGAGACACAACAAGATTTACAAGAGCATTGAAGAGAAATTGCATAGATTTGAGATTTTTAGAGATAATTTGAAACACATTAATGAGAGGAACAATATTGTTAGTAATTATTCGCTTGGTTTGAATGATTTTGCAGATTTAAGCCATGATGAATTCAAGAAAATGTATTTAGGACTCAAAGTTCAAAATGAAAGGAGATCAAATGATGAATTTATTTATAGTGATTTTGTGGATTTGCCTAAGTCTGTTGATTGGAGAAAAAAAGGTGCTGTGACTGATGTCAAAAATCAAGGCTCATGTG : GTAGTTGTTGGGCGTTTTCGACGGTAGCGGCGGTAGAGGG</gDNA_template>
            <first_frame> S  L  I  P  T  K  Q  K  *  K  W  L  P  N  S  H  F  L  S  Y  F  P  F  Y  Y  F  L  S  S  C  H  A  A  T  F  A  R  D  F  S  I  V  G  Y  S  P  D  D  L  N  S  I  D  N  I  I  N  L  F  E  T  W  M  E  R  H  N  K  I  Y  K  S  I  E  E  K  L  H  R  F  E  I  F  R  D  N  L  K  H  I  N  E  R  N  N  I  V  S  N  Y  S  L  G  L  N  D  F  A  D  L  S  H  D  E  F  K  K  M  Y  L  G  L  K  V  Q  N  E  R  R  S  N  D  E  F  I  Y  S  D  F  V  D  L  P  K  S  V  D  W  R  K  K  G  A  V  T  D  V  K  N  Q  G  S  C   : G  S  C  W  A  F  S  T  V  A  A  V  E   </first_frame>
            <second_frame>  L  *  F  L  Q  N  K  N  K  N  G  F  Q  I  L  I  S  Y  P  I  S  H  F  I  T  F  S  H  H  V  T  P  Q  H  L  R  V  T  S  P  S  W  D  I  P  P  M  T  *  I  A  S  I  T  S  S  I  S  S  R  R  G  W  R  D  T  T  R  F  T  R  A  L  K  R  N  C  I  D  L  R  F  L  E  I  I  *  N  T  L  M  R  G  T  I  L  L  V  I  I  R  L  V  *  M  I  L  Q  I  *  A  M  M  N  S  R  K  C  I  *  D  S  K  F  K  M  K  G  D  Q  M  M  N  L  F  I  V  I  L  W  I  C  L  S  L  L  I  G  E  K  K  V  L  *  L  M  S  K  I  K  A  H  V  :  V  V  V  G  R  F  R  R  *  R  R  *  R  </second_frame>
            <third_frame>   F  N  S  Y  K  T  K  I  K  M  A  S  K  F  S  F  L  I  L  F  P  I  L  L  L  S  L  I  M  S  R  R  N  I  C  A  *  L  L  H  R  G  I  F  P  R  *  L  E  *  H  R  *  H  H  Q  S  L  R  D  V  D  G  E  T  Q  Q  D  L  Q  E  H  *  R  E  I  A  *  I  *  D  F  *  R  *  F  E  T  H  *  *  E  E  Q  Y  C  *  *  L  F  A  W  F  E  *  F  C  R  F  K  P  *  *  I  Q  E  N  V  F  R  T  Q  S  S  K  *  K  E  I  K  *  *  I  Y  L  *  *  F  C  G  F  A  *  V  C  *  L  E  K  K  R  C  C  D  *  C  Q  K  S  R  L  M  W :   *  L  L  G  V  F  D  G  S  G  G  R  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165F06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29175" stop="29637"/>
                    <exon start="30365" stop="30402"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWLPNSHFLSYFPFYYFLSSCHAATFARDFSIVGYSPDDLNSIDNIINLFETWMERHNKIYKSIEEKLHRFEIFRDNLKHINERNNIVSNYSLGLNDFADLSHDEFKKMYLGLKVQNERRSNDEFIYSDFVDLPKSVDWRKKGAVTDVKNQGSCGSCWAFSTVAAVE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="38112" PGL_stop="32390"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38112" e_stop="37924"/>
            <exon e_start="37515" e_stop="37006"/>
            <exon e_start="36049" e_stop="35997"/>
            <exon e_start="35565" e_stop="35434"/>
            <exon e_start="34908" e_stop="34747"/>
            <exon e_start="34129" e_stop="33520"/>
            <exon e_start="32411" e_stop="32390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.743" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.773"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38112" e_stop="37924" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37923" i_stop="37516" i_length="408"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="37515" e_stop="37006" e_length="510"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37005" i_stop="36050" i_length="956"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36049" e_stop="35997" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="35996" i_stop="35566" i_length="431"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35565" e_stop="35434" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.958">
            <gDNA_intron_boundary i_start="35433" i_stop="34909" i_length="525"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34908" e_stop="34747" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.743">
            <gDNA_intron_boundary i_start="34746" i_stop="34130" i_length="617"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34129" e_stop="33520" e_length="610"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33519" i_stop="32412" i_length="1108"/>
          </intron>
          <exon e_serial="7" e_score="0.773">
            <gDNA_exon_boundary e_start="32411" e_stop="32390" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38112" stop="37924"/>
              <exon start="37515" stop="37006"/>
              <exon start="36049" stop="35997"/>
              <exon start="35565" stop="35434"/>
              <exon start="34908" stop="34747"/>
              <exon start="34129" stop="33520"/>
              <exon start="32411" stop="32390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACCTTTTCTTACCTTCCTTTTTCCTTTTTCACCTTTATTTATTTTGTATTTTTATTTTCAAATTAAAAAACACAAATTATTTCTAAAAAAAAAAAAGTCATTTCTATTTCTCTTTTTTTTTTCTCTTCTCTAAACCCTAAATATATATTTTCTTTTTCTCTTCCATCTTGACAATTTCCAATTTACG : GTGAATTTGGGGGGAAAAATCGATGAAAAATGTCGGTAACTGAGGCAGGTAGTGGAGTAATGACGAGTAGAGATCATTTCAGTGTTGCCGGAGTTCAAAATTCTCCGTCGAATGTTCCGGCAACGACGCCGGTGGTTCAGAATATGCATTTGGGTTACAGAGATGAAAATACGGCTGTGTTTGCCCCGCCACCGTACCAGTCGGCTGAAGGTTCTGCCGGAGCTGGGACATCGATGTTGCAGAACTTGAACAATAATTCGTCGGAGCCGATGAAACGGAAGAGAGGGAGGCCTAGGAAATACGGTCCGGATGGGTCTATGGCATTGGGATTGAATCCGGCTGCTTCGCCGGTTGGTGGTGGTTCTCTTGGCGGTAGCTTGTCGCCCCGAGATCCGGGTAATTCTGCTGGTGCTCAGATGCATTCTGGAGGACCAGGTTCGCCAAATTCGTCGAAGAAAGGTAGAGGGAGACCTCCTGGATCCGGCAAAAAACAGCAAATGGACAATCTTG : GATCAACAGGATTTGGATTCACACCACATATTATCGCTGTGAAACCAGGAGAG : GATGTGGCATATAAAATAATGTCGTTTTCTCAGAATGGTCCAAGGGCTGTGTGCATCTTATCTGCCAGTGGTGCAATATCATATGTGACTCTTAAACAAACTGCCACGTCCGGTGGAACGGCAACATATGAG : GGACGGTTTGAGATTTTGTCTCTCTCTGGTTCATTTATGCTGTCTGACATTGGTGGTCAACAAAGCAGAACAGGTGGATTAAGTGTATCATTAGCTGGATCTGATGGACGGATTTTAGGCGGTTGTGTGGCGGGTGTTCTAACAGCCGCATCACCAGTCCAG : GTTATCGTAGGTAGCTTCATTGCAGATGGTCGGAAAGAGCCAAAAACATCAAACCATTTTGAGGTTTTACCTGCTCCGTTGAATGCCAATCTTGGTGTTGGTGGTGGTTTGACAGGGGCCAATAGCCCACCATCACGAGGCACTTATAGTGAATCATCTGGTGGACCAGGCAGCCCCATAAATCAGAGGGGTCCAGTATGCACCAACGATAACCTGCAAGGAATCTCAAGCATGCCTTGGAAATGAGTTATTAACGCTCTCTTTTCTGACCAATTGAACTCCGTGTCATCGACTAGTTCACTGAAGAAGACTCCAAGTGAGGATTGTTGTAATTTTAATCGGTGTAATCGTAGTTGTGCAGAAATAAGGTTCACAGACACTTCTTACCTCAAGTTCAAGAACTGGTGAGAAACGTCGATTTGCTGATGCGTAGTTGTTCTGCATTTTCTGTCTTGTTGATTTAATTTCTTGTATTTCATCAGTCATAGGACATGGTTTGGCTTTTTTTGTTCTATCTAGTAATCACTTACTCATATTAGCCATCTTCCAACTTTAGAGTGTATTTTATTGCAATTCTGTGATCTAGAATAATATCAATTATGTACTTTTT : AAAGAAAAATAAAACAAGATAA</gDNA_template>
            <first_frame> L  P  F  L  T  F  L  F  P  F  S  P  L  F  I  L  Y  F  Y  F  Q  I  K  K  H  K  L  F  L  K  K  K  K  S  F  L  F  L  F  F  F  S  L  L  *  T  L  N  I  Y  F  L  F  L  F  H  L  D  N  F  Q  F  T  :  V  N  L  G  G  K  I  D  E  K  C  R  *  L  R  Q  V  V  E  *  *  R  V  E  I  I  S  V  L  P  E  F  K  I  L  R  R  M  F  R  Q  R  R  R  W  F  R  I  C  I  W  V  T  E  M  K  I  R  L  C  L  P  R  H  R  T  S  R  L  K  V  L  P  E  L  G  H  R  C  C  R  T  *  T  I  I  R  R  S  R  *  N  G  R  E  G  G  L  G  N  T  V  R  M  G  L  W  H  W  D  *  I  R  L  L  R  R  L  V  V  V  L  L  A  V  A  C  R  P  E  I  R  V  I  L  L  V  L  R  C  I  L  E  D  Q  V  R  Q  I  R  R  R  K  V  E  G  D  L  L  D  P  A  K  N  S  K  W  T  I  L  :  D  Q  Q  D  L  D  S  H  H  I  L  S  L  *  N  Q  E  R :   M  W  H  I  K  *  C  R  F  L  R  M  V  Q  G  L  C  A  S  Y  L  P  V  V  Q  Y  H  M  *  L  L  N  K  L  P  R  P  V  E  R  Q  H  M  R :   D  G  L  R  F  C  L  S  L  V  H  L  C  C  L  T  L  V  V  N  K  A  E  Q  V  D  *  V  Y  H  *  L  D  L  M  D  G  F  *  A  V  V  W  R  V  F  *  Q  P  H  H  Q  S  R :   L  S  *  V  A  S  L  Q  M  V  G  K  S  Q  K  H  Q  T  I  L  R  F  Y  L  L  R  *  M  P  I  L  V  L  V  V  V  *  Q  G  P  I  A  H  H  H  E  A  L  I  V  N  H  L  V  D  Q  A  A  P  *  I  R  G  V  Q  Y  A  P  T  I  T  C  K  E  S  Q  A  C  L  G  N  E  L  L  T  L  S  F  L  T  N  *  T  P  C  H  R  L  V  H  *  R  R  L  Q  V  R  I  V  V  I  L  I  G  V  I  V  V  V  Q  K  *  G  S  Q  T  L  L  T  S  S  S  R  T  G  E  K  R  R  F  A  D  A  *  L  F  C  I  F  C  L  V  D  L  I  S  C  I  S  S  V  I  G  H  G  L  A  F  F  V  L  S  S  N  H  L  L  I  L  A  I  F  Q  L  *  S  V  F  Y  C  N  S  V  I  *  N  N  I  N  Y  V  L  F  :  K  E  K  *  N  K  I  </first_frame>
            <second_frame>  Y  L  F  L  P  S  F  F  L  F  H  L  Y  L  F  C  I  F  I  F  K  L  K  N  T  N  Y  F  *  K  K  K  S  H  F  Y  F  S  F  F  F  L  F  S  K  P  *  I  Y  I  F  F  F  S  S  I  L  T  I  S  N  L  R :   *  I  W  G  E  K  S  M  K  N  V  G  N  *  G  R  *  W  S  N  D  E  *  R  S  F  Q  C  C  R  S  S  K  F  S  V  E  C  S  G  N  D  A  G  G  S  E  Y  A  F  G  L  Q  R  *  K  Y  G  C  V  C  P  A  T  V  P  V  G  *  R  F  C  R  S  W  D  I  D  V  A  E  L  E  Q  *  F  V  G  A  D  E  T  E  E  R  E  A  *  E  I  R  S  G  W  V  Y  G  I  G  I  E  S  G  C  F  A  G  W  W  W  F  S  W  R  *  L  V  A  P  R  S  G  *  F  C  W  C  S  D  A  F  W  R  T  R  F  A  K  F  V  E  E  R  *  R  E  T  S  W  I  R  Q  K  T  A  N  G  Q  S  W :   I  N  R  I  W  I  H  T  T  Y  Y  R  C  E  T  R  R   : G  C  G  I  *  N  N  V  V  F  S  E  W  S  K  G  C  V  H  L  I  C  Q  W  C  N  I  I  C  D  S  *  T  N  C  H  V  R  W  N  G  N  I  *   : G  T  V  *  D  F  V  S  L  W  F  I  Y  A  V  *  H  W  W  S  T  K  Q  N  R  W  I  K  C  I  I  S  W  I  *  W  T  D  F  R  R  L  C  G  G  C  S  N  S  R  I  T  S  P   : G  Y  R  R  *  L  H  C  R  W  S  E  R  A  K  N  I  K  P  F  *  G  F  T  C  S  V  E  C  Q  S  W  C  W  W  W  F  D  R  G  Q  *  P  T  I  T  R  H  L  *  *  I  I  W  W  T  R  Q  P  H  K  S  E  G  S  S  M  H  Q  R  *  P  A  R  N  L  K  H  A  L  E  M  S  Y  *  R  S  L  F  *  P  I  E  L  R  V  I  D  *  F  T  E  E  D  S  K  *  G  L  L  *  F  *  S  V  *  S  *  L  C  R  N  K  V  H  R  H  F  L  P  Q  V  Q  E  L  V  R  N  V  D  L  L  M  R  S  C  S  A  F  S  V  L  L  I  *  F  L  V  F  H  Q  S  *  D  M  V  W  L  F  L  F  Y  L  V  I  T  Y  S  Y  *  P  S  S  N  F  R  V  Y  F  I  A  I  L  *  S  R  I  I  S  I  M  Y  F  L :   K  K  N  K  T  R  * </second_frame>
            <third_frame>   T  F  S  Y  L  P  F  S  F  F  T  F  I  Y  F  V  F  L  F  S  N  *  K  T  Q  I  I  S  K  K  K  K  V  I  S  I  S  L  F  F  F  S  S  L  N  P  K  Y  I  F  S  F  S  L  P  S  *  Q  F  P  I  Y   : G  E  F  G  G  K  N  R  *  K  M  S  V  T  E  A  G  S  G  V  M  T  S  R  D  H  F  S  V  A  G  V  Q  N  S  P  S  N  V  P  A  T  T  P  V  V  Q  N  M  H  L  G  Y  R  D  E  N  T  A  V  F  A  P  P  P  Y  Q  S  A  E  G  S  A  G  A  G  T  S  M  L  Q  N  L  N  N  N  S  S  E  P  M  K  R  K  R  G  R  P  R  K  Y  G  P  D  G  S  M  A  L  G  L  N  P  A  A  S  P  V  G  G  G  S  L  G  G  S  L  S  P  R  D  P  G  N  S  A  G  A  Q  M  H  S  G  G  P  G  S  P  N  S  S  K  K  G  R  G  R  P  P  G  S  G  K  K  Q  Q  M  D  N  L   : G  S  T  G  F  G  F  T  P  H  I  I  A  V  K  P  G  E  :  D  V  A  Y  K  I  M  S  F  S  Q  N  G  P  R  A  V  C  I  L  S  A  S  G  A  I  S  Y  V  T  L  K  Q  T  A  T  S  G  G  T  A  T  Y  E  :  G  R  F  E  I  L  S  L  S  G  S  F  M  L  S  D  I  G  G  Q  Q  S  R  T  G  G  L  S  V  S  L  A  G  S  D  G  R  I  L  G  G  C  V  A  G  V  L  T  A  A  S  P  V  Q  :  V  I  V  G  S  F  I  A  D  G  R  K  E  P  K  T  S  N  H  F  E  V  L  P  A  P  L  N  A  N  L  G  V  G  G  G  L  T  G  A  N  S  P  P  S  R  G  T  Y  S  E  S  S  G  G  P  G  S  P  I  N  Q  R  G  P  V  C  T  N  D  N  L  Q  G  I  S  S  M  P  W  K  *  V  I  N  A  L  F  S  D  Q  L  N  S  V  S  S  T  S  S  L  K  K  T  P  S  E  D  C  C  N  F  N  R  C  N  R  S  C  A  E  I  R  F  T  D  T  S  Y  L  K  F  K  N  W  *  E  T  S  I  C  *  C  V  V  V  L  H  F  L  S  C  *  F  N  F  L  Y  F  I  S  H  R  T  W  F  G  F  F  C  S  I  *  *  S  L  T  H  I  S  H  L  P  T  L  E  C  I  L  L  Q  F  C  D  L  E  *  Y  Q  L  C  T  F   : *  R  K  I  K  Q  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165F06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37489" stop="37006"/>
                    <exon start="36049" stop="35997"/>
                    <exon start="35565" stop="35434"/>
                    <exon start="34908" stop="34747"/>
                    <exon start="34129" stop="33884"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1074</number_coding_nucleotides>
                  <number_encoded_amino_acids>358</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSVTEAGSGVMTSRDHFSVAGVQNSPSNVPATTPVVQNMHLGYRDENTAVFAPPPYQSAEGSAGAGTSMLQNLNNNSSEPMKRKRGRPRKYGPDGSMALGLNPAASPVGGGSLGGSLSPRDPGNSAGAQMHSGGPGSPNSSKKGRGRPPGSGKKQQMDNLGSTGFGFTPHIIAVKPGEDVAYKIMSFSQNGPRAVCILSASGAISYVTLKQTATSGGTATYEGRFEILSLSGSFMLSDIGGQQSRTGGLSVSLAGSDGRILGGCVAGVLTAASPVQVIVGSFIADGRKEPKTSNHFEVLPAPLNANLGVGGGLTGANSPPSRGTYSESSGGPGSPINQRGPVCTNDNLQGISSMPWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="39535" PGL_stop="40792"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39535" e_stop="39643"/>
            <exon e_start="39720" e_stop="39786"/>
            <exon e_start="40533" e_stop="40642"/>
            <exon e_start="40727" e_stop="40792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.852" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.029" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39535" e_stop="39643" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.852">
            <gDNA_intron_boundary i_start="39644" i_stop="39719" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39720" e_stop="39786" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.953">
            <gDNA_intron_boundary i_start="39787" i_stop="40532" i_length="746"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40533" e_stop="40642" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.890" acc_prob="0.029">
            <gDNA_intron_boundary i_start="40643" i_stop="40726" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40727" e_stop="40792" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39535" stop="39643"/>
              <exon start="39720" stop="39786"/>
              <exon start="40533" stop="40642"/>
              <exon start="40727" stop="40792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCTTCATCTTCATCTTCATCTTCATCTCCATGTTTGAACCAGTACCAGTATCAAGCTATTCTTCGCTTGCCACGTGTCCCTTTAATTTCCTCTCATCTTCTTAAAG : TTCCCAAGAAAAATCGAAACTCACTTATTTTCTGCTGCAACAACACTGTGCCTGATTCAAGAACAGG : TGAGCAAGTTAAAGGAGAATGCTTAACCAAGAGAAGAGAGCTCCTGCTACAGGCAGGCTCTGTTGCATTTTCTCTGTCCGCCTTTACATCGATTGCATTGGCAGAGAAGG : ATGTCCCGGAGGAGTTTCGTGTTTATTCAGATGATGTCAACAAGTTTAAGATCATGATACCTAGTG</gDNA_template>
            <first_frame> S  S  S  S  S  S  S  S  S  S  P  C  L  N  Q  Y  Q  Y  Q  A  I  L  R  L  P  R  V  P  L  I  S  S  H  L  L  K   : V  P  K  K  N  R  N  S  L  I  F  C  C  N  N  T  V  P  D  S  R  T  G :   E  Q  V  K  G  E  C  L  T  K  R  R  E  L  L  L  Q  A  G  S  V  A  F  S  L  S  A  F  T  S  I  A  L  A  E  K   : D  V  P  E  E  F  R  V  Y  S  D  D  V  N  K  F  K  I  M  I  P  S  </first_frame>
            <second_frame>  H  L  H  L  H  L  H  L  H  L  H  V  *  T  S  T  S  I  K  L  F  F  A  C  H  V  S  L  *  F  P  L  I  F  L  K  :  F  P  R  K  I  E  T  H  L  F  S  A  A  T  T  L  C  L  I  Q  E  Q   : V  S  K  L  K  E  N  A  *  P  R  E  E  S  S  C  Y  R  Q  A  L  L  H  F  L  C  P  P  L  H  R  L  H  W  Q  R  R  :  M  S  R  R  S  F  V  F  I  Q  M  M  S  T  S  L  R  S  *  Y  L  V </second_frame>
            <third_frame>   I  F  I  F  I  F  I  F  I  S  M  F  E  P  V  P  V  S  S  Y  S  S  L  A  T  C  P  F  N  F  L  S  S  S  *  S :   S  Q  E  K  S  K  L  T  Y  F  L  L  Q  Q  H  C  A  *  F  K  N  R  :  *  A  S  *  R  R  M  L  N  Q  E  K  R  A  P  A  T  G  R  L  C  C  I  F  S  V  R  L  Y  I  D  C  I  G  R  E  G :   C  P  G  G  V  S  C  L  F  R  *  C  Q  Q  V  *  D  H  D  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165F06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39535" stop="39643"/>
                    <exon start="39720" stop="39786"/>
                    <exon start="40533" stop="40642"/>
                    <exon start="40727" stop="40791"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSSSSSSSSPCLNQYQYQAILRLPRVPLISSHLLKVPKKNRNSLIFCCNNTVPDSRTGEQVKGECLTKRRELLLQAGSVAFSLSAFTSIALAEKDVPEEFRVYSDDVNKFKIMIPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="79259" PGL_stop="77004"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79259" e_stop="79199"/>
            <exon e_start="79111" e_stop="79029"/>
            <exon e_start="78925" e_stop="78850"/>
            <exon e_start="78482" e_stop="78364"/>
            <exon e_start="78238" e_stop="78194"/>
            <exon e_start="77392" e_stop="77167"/>
            <exon e_start="77014" e_stop="77004"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.251" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.815" e_score="1.000"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79259" e_stop="79199" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.251" acc_prob="0.932">
            <gDNA_intron_boundary i_start="79198" i_stop="79112" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79111" e_stop="79029" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.862" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79028" i_stop="78926" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78925" e_stop="78850" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.926">
            <gDNA_intron_boundary i_start="78849" i_stop="78483" i_length="367"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78482" e_stop="78364" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.897">
            <gDNA_intron_boundary i_start="78363" i_stop="78239" i_length="125"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78238" e_stop="78194" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78193" i_stop="77393" i_length="801"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77392" e_stop="77167" e_length="226"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.815">
            <gDNA_intron_boundary i_start="77166" i_stop="77015" i_length="152"/>
          </intron>
          <exon e_serial="7" e_score="0.636">
            <gDNA_exon_boundary e_start="77014" e_stop="77004" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79259" stop="79199"/>
              <exon start="79111" stop="79029"/>
              <exon start="78925" stop="78850"/>
              <exon start="78482" stop="78364"/>
              <exon start="78238" stop="78194"/>
              <exon start="77392" stop="77167"/>
              <exon start="77014" stop="77004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325341" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGGTGATGGAGTAAGGTCACTCTTAGCTTTCTATCCTCCAGAAGCTTCTAACTCAAATG : TCAGCATAGTAATCACAAGCCTTGGTGCTGATTTCACCAAGTTGGAATCTTTCGGGAAAGTTGATGCTTTTGCTGAGAATCTG : GTCAGCGGATTTGATAGAAGCTGGCAAAGGCCTCCGGGAGTGAAAGCAAAACTCATAGATAGCAAAGCTTCTAAAG : GGTTGTATTACATCGAGTACACTCTCCAAAATCCCGGTGAAAGTCTCAGACATCTATTTTCAGTGCTTGGGATAGCAAACAATGGGATTTACAACAGACTGTATACTCTCACTGGACAG : TTTGTAGACGAGGAGGCAGAGAAATATGGTGCCAAAATACAGAAG : GCTGTTTCTTCTTTCAGATTAATATGATGACATGAACAGAGAGCGCGATATCGCAAATTTTGGCTTGAGCTTCTGGTTTTTCTCGTTTGGTGAATGGTAAACATAATTGAGAGCGCGATATCACAGATTCAAGTTCTGGTTAAGGTATATTATGACGACTCGAGAAAAAACTGGAGTTGTAAGTATGAACTAGCAACTTGATCAATGTTAGAGTTAGTATTTGCAT : CAATAAATACA</gDNA_template>
            <first_frame> E  G  D  G  V  R  S  L  L  A  F  Y  P  P  E  A  S  N  S  N   : V  S  I  V  I  T  S  L  G  A  D  F  T  K  L  E  S  F  G  K  V  D  A  F  A  E  N  L  :  V  S  G  F  D  R  S  W  Q  R  P  P  G  V  K  A  K  L  I  D  S  K  A  S  K   : G  L  Y  Y  I  E  Y  T  L  Q  N  P  G  E  S  L  R  H  L  F  S  V  L  G  I  A  N  N  G  I  Y  N  R  L  Y  T  L  T  G  Q  :  F  V  D  E  E  A  E  K  Y  G  A  K  I  Q  K  :  A  V  S  S  F  R  L  I  *  *  H  E  Q  R  A  R  Y  R  K  F  W  L  E  L  L  V  F  L  V  W  *  M  V  N  I  I  E  S  A  I  S  Q  I  Q  V  L  V  K  V  Y  Y  D  D  S  R  K  N  W  S  C  K  Y  E  L  A  T  *  S  M  L  E  L  V  F  A   : S  I  N  T </first_frame>
            <second_frame>  K  V  M  E  *  G  H  S  *  L  S  I  L  Q  K  L  L  T  Q  M  :  S  A  *  *  S  Q  A  L  V  L  I  S  P  S  W  N  L  S  G  K  L  M  L  L  L  R  I  W :   S  A  D  L  I  E  A  G  K  G  L  R  E  *  K  Q  N  S  *  I  A  K  L  L  K  :  G  C  I  T  S  S  T  L  S  K  I  P  V  K  V  S  D  I  Y  F  Q  C  L  G  *  Q  T  M  G  F  T  T  D  C  I  L  S  L  D  S :   L  *  T  R  R  Q  R  N  M  V  P  K  Y  R  R :   L  F  L  L  S  D  *  Y  D  D  M  N  R  E  R  D  I  A  N  F  G  L  S  F  W  F  F  S  F  G  E  W  *  T  *  L  R  A  R  Y  H  R  F  K  F  W  L  R  Y  I  M  T  T  R  E  K  T  G  V  V  S  M  N  *  Q  L  D  Q  C  *  S  *  Y  L  H  :  Q  *  I   </second_frame>
            <third_frame>   R  *  W  S  K  V  T  L  S  F  L  S  S  R  S  F  *  L  K  C :   Q  H  S  N  H  K  P  W  C  *  F  H  Q  V  G  I  F  R  E  S  *  C  F  C  *  E  S   : G  Q  R  I  *  *  K  L  A  K  A  S  G  S  E  S  K  T  H  R  *  Q  S  F  *  R :   V  V  L  H  R  V  H  S  P  K  S  R  *  K  S  Q  T  S  I  F  S  A  W  D  S  K  Q  W  D  L  Q  Q  T  V  Y  S  H  W  T   : V  C  R  R  G  G  R  E  I  W  C  Q  N  T  E   : G  C  F  F  F  Q  I  N  M  M  T  *  T  E  S  A  I  S  Q  I  L  A  *  A  S  G  F  S  R  L  V  N  G  K  H  N  *  E  R  D  I  T  D  S  S  S  G  *  G  I  L  *  R  L  E  K  K  L  E  L  *  V  *  T  S  N  L  I  N  V  R  V  S  I  C  I :   N  K  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165F06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79259" stop="79199"/>
                    <exon start="79111" stop="79029"/>
                    <exon start="78925" stop="78850"/>
                    <exon start="78482" stop="78364"/>
                    <exon start="78238" stop="78194"/>
                    <exon start="77392" stop="77366"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGDGVRSLLAFYPPEASNSNVSIVITSLGADFTKLESFGKVDAFAENLVSGFDRSWQRPPGVKAKLIDSKASKGLYYIEYTLQNPGESLRHLFSVLGIANNGIYNRLYTLTGQFVDEEAEKYGAKIQKAVSSFRLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 16 chains have been computed
$ 
$ memory statistics:
$ 158288 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 19786 bytes was the average size of a spliced alignment
$ 14464 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1808 bytes was the average size of a predicted gene location
$ 8 megabytes was the average size of the backtrace matrix
$ 20 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 12:41:07
-->
