<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-07 17:38:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0147G13-IGH9W/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0147G13-IGH9W/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-IGH9W/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8764" ref_strand="+" ref_description="SGN-M8764 C2_At5g19370 [cosii_markers]">
      <seq>atgttgagaatttcttcttcttcttcttctttgcatgttccctcaatttgtggagcaccagttagtttcattctttctttcttgaatccatcttctcgtaaagtatcaaactttactcgcttagctttacttcactcgacaacccttttccccaattcacgtaatttccagtttcccaccttcagaagggtgtcaacaatgatgggtcgtactcattcttgttcgagagtggttacagcttcatatagtgctgcgagtggtcctggaggcagttctggaggcgatcgggagatattggtgcagcatttacttgtcaaagaagatgatcagaaacttctactggaccttcagaaaaaaactgctgaagaggatctaagtgatctggccgttgagtattctatgtgtccatcanaagaagatgggggaatgctgggctgggtgagaaaagggcaaatggtgccagaatttgaagaagctgcatttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-IGH9W/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18315" stop="15735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18015" g_stop="17778" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17777" i_stop="16865" i_length="913">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16864" g_stop="16736" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="365" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16735" i_stop="16523" i_length="213">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16522" g_stop="16431" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="456" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16430" i_stop="16066" i_length="365">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16065" g_stop="16035" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="487" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-M8764" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18015" e_stop="17778"/>
          <exon e_start="16864" e_stop="16736"/>
          <exon e_start="16522" e_stop="16431"/>
          <exon e_start="16065" e_stop="16035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGAGAATTTCTTCTTCTTCTTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAGGTATTTGTTTGATTCTATGAATAATCTCTTTCTATATTAGTTTTTGTTGTTGTTTGTAGCTGAAGAATGCTCTGTTGAGGTTGAGCCCTAGTGTAACAGTAGAGTTAAAATGTAGGTCAAAATGGAGGGGTGGGGTAGAGTTGTTCTTTTTTGATGATGTGTAGGCAGTGGCAAAGCTGGGATTTCCGAATGAAAAAGCTAAAAGATTCAAAATTTACTATATATATACCCAAAGAATGATTCTTTTTGATAACCTTGGTGTACGAGCTAGCTTACGACACCTATACTAATTCCATGAGATAGACCAGGTAAGTCTATCAATCAAGACAGTGTGTTTGTCTCTGCTGGAATTTTGACATGAGACCTTAACCCAAAGAAATGATTTTGACCTTTGTGTATACGGTGCACTTTCTGGTTGTACCTCTGCCCCTGCCTGTAGGTCATGGTTTGAGATGTAGAAACAGCCAACTCGCAGAAATAATAAGGGAAGGTAGCACGATTTGTAGTTTACTGGTACCATAATTTCCAGGCAATAAGTGTGAGGTCCATTCTCACTTGACCTTGTGTATATAATGTACTTTTCCTCCCTAGCTCTGCCCCATGCCTGTAAGTCAAGGTTTGAGCTGTAGAAACAGCCTATTTGTAGAAATACTAGTGGAAAGTAGCGCATATTGTAGTTTAGTGGTACTGAAGTTTCGCGCAAGTTGGCCCGGCACCACAGTTATCTCCAAAAAAAAAGTGGCTTCATCAATTATCATAAATGTGAGTGTAGCTATTATAGGTTTTGTCTTTATGACGTCCTCTGGATCTTGAGATTGCATAGGGGTAGTTCCAGAATCTGAAGGGCGAAGAGAGTTCTTTTCCTTTTGCTATCATCTGATACATGCTGAATCTCACAATATATAACTTTCAGCTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACTGCTGAAGGTTAGTTTCAACTTTATTTCTTAGTAAGGAAGGCCCCAGTAACATTCCCATACAAATTTAAGAAGCTGAGAACAAATGAGGACTAAATCTATAAGTAAGTTATTCATATGTCATGATTAAATTTGAGAACTGGGTATGTTAGTATGAAACAAGTTCTCTCTTGATGCTTGTCCTTTCATTTATATTGTTGACTGAAATGCTTGTCACAATCAGGAGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCAAAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGGGCAAATGGTATGCTTCTTATGATTCTTATCTTCAAAAGTATTTTTCTTCTTTTTCACCCTTTTTTGGTGACAGGAATCAAATTTTCTTGTGATTATGTTTCCAGAATGTTAATTTCATACTAACAGGCCTTCAGATGATAGCAAACAAAATATCATACATGTGCTGTCTTATAAACATTTAGATGGAGATTTGACTTTTGTTATAGTTTTAAATTTCCATTTGTACATAACTACACCGTTGTTGCCTTTTGTTATTTGTATCCTGATAAGTACCTTTCTACTTTTTAGAAGATGCATTCTTGGTCACCTGGATGCCCAGGCTTACTTGACTTCATTTATTTGTTTTTGTAATTTAACTGTTAATATTATTAGGTGCCAGAATTTGAAGAAGCTGCATTTGGTG</genome_strand>
        <mrna_strand>ATGTTGAGAATTTCTTCTTCTTCTTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACTGCTG-A-.....................................................................................................................................................................................................................-AGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCANAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGGGCAAATG.............................................................................................................................................................................................................................................................................................................................................................................GTGCCAGAATTTGAAGAAGCTGCATTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-IGH9W/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M619-F" ref_strand="+" ref_description="SGN-M619-F TG350-F [rflp_markers_forward]">
      <seq>atagggagacagcttgcatgcctgcaggaaagccattcaattttgtctcagtggcttttgctgcttcgatctatattctttacctggaattgcgctggtctatgggaatacaaatttttgctcattccttgaccacatacctgctattttgaagccaactgtaaaccaaaggactgcatcatttagaagccagaaagagtgaacttggaggcgcctttcctagatccaggagatgaagattttgttctattggaatttctagggcacacagatttcttccccttacagataaaatcccagtcttttttttttggctgttttgaagtatataatggatagtgaaagagcatatttctttaggttatatgtgacagtttgtcacagtctgtatgtattatgctttttgcgaagtgaacattatcaaattttgcttattcaataactcaacaacattattctttactccacttgactacttctcttctccattgattagctttcttgctttcttcatgctttttaccacatttttatcttgcattaccataaggtacctgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-IGH9W/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="84826" stop="83687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84526" g_stop="83987" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="560" r_length="540" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-M619-F" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M619-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84526" e_stop="83987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCAGGAAAGCCATTCAATTTTGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCTTTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTTTTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAAAGGACTGCATCATTTAGAAGCCAGAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTCTAGGGCACACAGATTTCTTCCCCTTACAGATAAAATCCCAGTCTTTTTTTTTTGGCTGTTTTGAAGTATATAATGGATAGTGAAAGAGCATATTTCTTTAGGTTATATGTGACAGTTTGTCACAGTCTGTATGTATTATGCTTTTTGCGAAGTGTACATTATCAAATTTTGCTTATTCAATAACTCAACAACATTATTCTTTACTCCACTTGACTACTTCTCTTCTCCATTGATTAGTTTTCTTGCTTTCTTCATGCTTTTTACCACATTTTTATCTTGCATTACCATAAGGTACCTGTGA</genome_strand>
        <mrna_strand>CCTGCAGGAAAGCCATTCAATTTTGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCTTTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTTTTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAAAGGACTGCATCATTTAGAAGCCAGAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTCTAGGGCACACAGATTTCTTCCCCTTACAGATAAAATCCCAGTCTTTTTTTTTTGGCTGTTTTGAAGTATATAATGGATAGTGAAAGAGCATATTTCTTTAGGTTATATGTGACAGTTTGTCACAGTCTGTATGTATTATGCTTTTTGCGAAGTGAACATTATCAAATTTTGCTTATTCAATAACTCAACAACATTATTCTTTACTCCACTTGACTACTTCTCTTCTCCATTGATTAGCTTTCTTGCTTTCTTCATGCTTTTTACCACATTTTTATCTTGCATTACCATAAGGTACCTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-IGH9W/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M619-R" ref_strand="+" ref_description="SGN-M619-R TG350-R [rflp_markers_reverse]">
      <seq>ctcactatagggagacagcctgcatgcctgcaggaaagccattcaattttgtctcagtggcttttgctgcttcgatctatattctttacctggaattgcgctggtctatgggaatacaaatttttgctcattccttgaccacatacctgctattttgaagccaactgtaaaccaaaggactgcatcatttagaagccagaaagagtgaacttggaggcgcctttcctagatccaggagatgaagattttgttctattggaatttctagggcacacagatttcttccccttacagataaaatcccagtcttttttttttggctgttttgaagtatataatggatagtgaaagagcatatttctttaggttatatgtgacagtttgtcacagtctgtatgtattatgctttttgcgaagtgtacattatcaaattttgcttattcaataactcaacaacattattctttactccacttgactacttctcttctccattgattagttttcttgctttcttcatgctttttaccacatttttatcttgcattaccataaggtacctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-IGH9W/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="84826" stop="83688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84526" g_stop="83988" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="565" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-M619-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M619-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84526" e_stop="83988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCAGGAAAGCCATTCAATTTTGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCTTTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTTTTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAAAGGACTGCATCATTTAGAAGCCAGAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTCTAGGGCACACAGATTTCTTCCCCTTACAGATAAAATCCCAGTCTTTTTTTTTTGGCTGTTTTGAAGTATATAATGGATAGTGAAAGAGCATATTTCTTTAGGTTATATGTGACAGTTTGTCACAGTCTGTATGTATTATGCTTTTTGCGAAGTGTACATTATCAAATTTTGCTTATTCAATAACTCAACAACATTATTCTTTACTCCACTTGACTACTTCTCTTCTCCATTGATTAGTTTTCTTGCTTTCTTCATGCTTTTTACCACATTTTTATCTTGCATTACCATAAGGTACCTGTG</genome_strand>
        <mrna_strand>CCTGCAGGAAAGCCATTCAATTTTGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCTTTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTTTTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAAAGGACTGCATCATTTAGAAGCCAGAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTCTAGGGCACACAGATTTCTTCCCCTTACAGATAAAATCCCAGTCTTTTTTTTTTGGCTGTTTTGAAGTATATAATGGATAGTGAAAGAGCATATTTCTTTAGGTTATATGTGACAGTTTGTCACAGTCTGTATGTATTATGCTTTTTGCGAAGTGTACATTATCAAATTTTGCTTATTCAATAACTCAACAACATTATTCTTTACTCCACTTGACTACTTCTCTTCTCCATTGATTAGTTTTCTTGCTTTCTTCATGCTTTTTACCACATTTTTATCTTGCATTACCATAAGGTACCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-IGH9W/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2052" ref_strand="+" ref_description="SGN-M2052 T1504 [cos_markers]">
      <seq>ccgctggtggttactaataaaaggaagaagggtggtgatgctcaggaaaggttcccaaagcgtcgcaagggagattttagctgcacacttccggcaattgatggtgcttccgctcaagtgagaggatggtcttttgggaacttgtcaaaaagagacgccacacgtttttctcgtgaggtcaagaagtttgggaatgatagccaaattgacttaatatcatcagaggttggtggggcagttgaagctgcaccaactgaagctcaagttgagctttttgactcattgattgatggctgtagagaagcagttaaaggtgaagttgttgatccaaagggacctcttttagatttttttggtgttcccgtgaaggctgatgaactattgggccgtgttgaggaacttcaactcctagcaaagcgcatttctcgatatgcggatcctgtctcacagttccgtgctttggcttatctaaagcctgcaacttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-IGH9W/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="88581" stop="87162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88281" g_stop="88105" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88104" i_stop="87855" i_length="250">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87854" g_stop="87699" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="333" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87698" i_stop="87616" i_length="83">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87615" g_stop="87462" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="487" r_length="154" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-M2052" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M2052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88281" e_stop="88105"/>
          <exon e_start="87854" e_stop="87699"/>
          <exon e_start="87615" e_stop="87462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTGGTGGTTACTAATAAAAGAAAGAAGGGTGGTGATGCTCAGGAAAGGTTCCCAAAGCGTCGCAAGGGAGATTTTAGCTGCACACTTCCGGCAATTGATGGTGCTTCCGCTCAAGTGAGAGGATGGTCTTTTGGGAACTTGTCAAAAAGAGACGCCACACGTTTTTCTCGTGAGGTAGGGCTAGTTAATTATGTACATGAGTTTATTTTGGCTCTTGTTCTACTTATAAAATGCATTTGTTGGAATAAACAGTTCCTTTGTTGCTTCAGTTGTGTGATTCTATTTTCTTTCCATCCATATGTATTTTATTCGTGGTAACATCTTGTCTTTTTCTTTTCGTCAAAAAAACGTCTTGTCTTTGACCAAATTATTTGAATGTGTTGATATCAAAATCATTAATCTGTTAATTTCTCTCTAATTTTAGGTCAAGAAGTTTGGGAATGATAGCCAAATTGACTTAATATCATCAGAGGTTGGTGGGGCAGTTGAAGCTGCACCAACTGAAGCTCAAGTTGAGCTTTTTGACTCATTGATTGATGGCTGTAGAGAAGCAGTTAAAGGTGAAGTTGTTGATCCAAAGGTTTGTACATTGGTTCATAATGTATTTTTAAAGATTGGGGGATGACACACTTGGGCTGACATTTTGTGCGTTTTCACCTTCAGGGACCTCTTTTAGATTTTTTTGGTGTTCCTGTGAAGGCTGATGAACTATTGGCCCGTGTTGAGGAACTTCAACTCCTAGCAAAGCGCATTTCTCGATATGCAGATCCTGTCTCACAGTTCCGTGCTTTGGCTTATCTAAAGCCTGCAACTTGGT</genome_strand>
        <mrna_strand>CCGCTGGTGGTTACTAATAAAAGGAAGAAGGGTGGTGATGCTCAGGAAAGGTTCCCAAAGCGTCGCAAGGGAGATTTTAGCTGCACACTTCCGGCAATTGATGGTGCTTCCGCTCAAGTGAGAGGATGGTCTTTTGGGAACTTGTCAAAAAGAGACGCCACACGTTTTTCTCGTGAG..........................................................................................................................................................................................................................................................GTCAAGAAGTTTGGGAATGATAGCCAAATTGACTTAATATCATCAGAGGTTGGTGGGGCAGTTGAAGCTGCACCAACTGAAGCTCAAGTTGAGCTTTTTGACTCATTGATTGATGGCTGTAGAGAAGCAGTTAAAGGTGAAGTTGTTGATCCAAAG...................................................................................GGACCTCTTTTAGATTTTTTTGGTGTTCCCGTGAAGGCTGATGAACTATTGGGCCGTGTTGAGGAACTTCAACTCCTAGCAAAGCGCATTTCTCGATATGCGGATCCTGTCTCACAGTTCCGTGCTTTGGCTTATCTAAAGCCTGCAACTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="18015" PGL_stop="16035"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18015" e_stop="17778"/>
            <exon e_start="16864" e_stop="16736"/>
            <exon e_start="16522" e_stop="16431"/>
            <exon e_start="16065" e_stop="16035"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.949" e_score="0.984"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="0.978"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18015" e_stop="17778" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="17777" i_stop="16865" i_length="913"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="16864" e_stop="16736" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.949">
            <gDNA_intron_boundary i_start="16735" i_stop="16523" i_length="213"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="16522" e_stop="16431" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16430" i_stop="16066" i_length="365"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16065" e_stop="16035" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18015" stop="17778"/>
              <exon start="16864" stop="16736"/>
              <exon start="16522" stop="16431"/>
              <exon start="16065" stop="16035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8764" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTTGAGAATTTCTTCTTCTTCTTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAG : CTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACTGCTGAAG : GAGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCAAAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGGGCAAATG : GTGCCAGAATTTGAAGAAGCTGCATTTGGTG</gDNA_template>
            <first_frame> M  L  R  I  S  S  S  S  S  S  L  H  V  P  S  I  C  G  A  P  V  S  F  I  L  S  F  L  N  P  S  S  R  K  V  S  N  F  T  R  L  A  L  L  H  S  T  T  L  F  P  N  S  R  N  F  Q  F  P  T  F  R  R  V  S  T  M  M  G  R  T  H  S  C  S  R  V  V  T   : A  S  Y  S  A  A  S  G  P  G  G  S  S  G  G  D  R  E  I  L  V  Q  H  L  L  V  K  E  D  D  Q  K  L  L  L  D  L  Q  K  K  T  A  E   : G  E  D  L  S  D  L  A  V  E  Y  S  M  C  P  S  K  E  D  G  G  M  L  G  W  V  R  K  G  Q  M  :  V  P  E  F  E  E  A  A  F  G  </first_frame>
            <second_frame>  C  *  E  F  L  L  L  L  L  L  C  M  F  P  Q  F  V  E  H  Q  L  V  S  F  F  L  S  *  I  H  L  L  V  K  Y  Q  T  L  L  A  *  L  Y  F  T  R  Q  P  F  S  P  I  H  V  I  S  S  F  P  P  S  E  G  C  Q  Q  *  W  V  V  L  I  L  V  R  E  W  L  Q  :  L  H  I  V  L  R  V  V  L  E  A  V  L  E  A  I  G  R  Y  W  C  S  I  Y  L  S  K  K  M  I  R  N  F  Y  W  T  F  R  K  K  L  L  K  :  E  R  I  *  V  I  W  P  L  S  I  L  C  V  H  Q  K  K  M  G  E  C  W  A  G  *  E  K  G  K  W :   C  Q  N  L  K  K  L  H  L  V </second_frame>
            <third_frame>   V  E  N  F  F  F  F  F  F  F  A  C  S  L  N  L  W  S  T  S  *  F  H  S  F  F  L  E  S  I  F  S  *  S  I  K  L  Y  S  L  S  F  T  S  L  D  N  P  F  P  Q  F  T  *  F  P  V  S  H  L  Q  K  G  V  N  N  D  G  S  Y  S  F  L  F  E  S  G  Y  S :   F  I  *  C  C  E  W  S  W  R  Q  F  W  R  R  S  G  D  I  G  A  A  F  T  C  Q  R  R  *  S  E  T  S  T  G  P  S  E  K  N  C  *  R :   R  G  S  K  *  S  G  R  *  V  F  Y  V  S  I  K  R  R  W  G  N  A  G  L  G  E  K  R  A  N   : G  A  R  I  *  R  S  C  I  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18015" stop="17778"/>
                    <exon start="16864" stop="16736"/>
                    <exon start="16522" stop="16431"/>
                    <exon start="16065" stop="16036"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLRISSSSSSLHVPSICGAPVSFILSFLNPSSRKVSNFTRLALLHSTTLFPNSRNFQFPTFRRVSTMMGRTHSCSRVVTASYSAASGPGGSSGGDREILVQHLLVKEDDQKLLLDLQKKTAEGEDLSDLAVEYSMCPSKEDGGMLGWVRKGQMVPEFEEAAFG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="84526" PGL_stop="83987"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84526" e_stop="83987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84526" e_stop="83987" e_length="540"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84526" stop="83987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M619-F" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84526" stop="83988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M619-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGCAGGAAAGCCATTCAATTTTGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCTTTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTTTTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAAAGGACTGCATCATTTAGAAGCCAGAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTCTAGGGCACACAGATTTCTTCCCCTTACAGATAAAATCCCAGTCTTTTTTTTTTGGCTGTTTTGAAGTATATAATGGATAGTGAAAGAGCATATTTCTTTAGGTTATATGTGACAGTTTGTCACAGTCTGTATGTATTATGCTTTTTGCGAAGTGTACATTATCAAATTTTGCTTATTCAATAACTCAACAACATTATTCTTTACTCCACTTGACTACTTCTCTTCTCCATTGATTAGTTTTCTTGCTTTCTTCATGCTTTTTACCACATTTTTATCTTGCATTACCATAAGGTACCTGTGA</gDNA_template>
            <first_frame> P  A  G  K  P  F  N  F  V  S  V  A  F  A  A  S  I  Y  I  L  Y  L  E  L  R  W  S  M  G  I  Q  I  F  A  H  S  L  T  T  Y  L  L  F  *  S  Q  L  *  T  K  G  L  H  H  L  E  A  R  K  S  E  L  G  G  A  F  P  R  S  R  R  *  R  F  C  S  I  G  I  S  R  A  H  R  F  L  P  L  T  D  K  I  P  V  F  F  F  W  L  F  *  S  I  *  W  I  V  K  E  H  I  S  L  G  Y  M  *  Q  F  V  T  V  C  M  Y  Y  A  F  C  E  V  Y  I  I  K  F  C  L  F  N  N  S  T  T  L  F  F  T  P  L  D  Y  F  S  S  P  L  I  S  F  L  A  F  F  M  L  F  T  T  F  L  S  C  I  T  I  R  Y  L  * </first_frame>
            <second_frame>  L  Q  E  S  H  S  I  L  S  Q  W  L  L  L  L  R  S  I  F  F  T  W  N  C  A  G  L  W  E  Y  K  F  L  L  I  P  *  P  H  T  C  Y  F  E  A  N  C  K  P  K  D  C  I  I  *  K  P  E  R  V  N  L  E  A  P  F  L  D  P  G  D  E  D  F  V  L  L  E  F  L  G  H  T  D  F  F  P  L  Q  I  K  S  Q  S  F  F  F  G  C  F  E  V  Y  N  G  *  *  K  S  I  F  L  *  V  I  C  D  S  L  S  Q  S  V  C  I  M  L  F  A  K  C  T  L  S  N  F  A  Y  S  I  T  Q  Q  H  Y  S  L  L  H  L  T  T  S  L  L  H  *  L  V  F  L  L  S  S  C  F  L  P  H  F  Y  L  A  L  P  *  G  T  C   </second_frame>
            <third_frame>   C  R  K  A  I  Q  F  C  L  S  G  F  C  C  F  D  L  Y  S  L  P  G  I  A  L  V  Y  G  N  T  N  F  C  S  F  L  D  H  I  P  A  I  L  K  P  T  V  N  Q  R  T  A  S  F  R  S  Q  K  E  *  T  W  R  R  L  S  *  I  Q  E  M  K  I  L  F  Y  W  N  F  *  G  T  Q  I  S  S  P  Y  R  *  N  P  S  L  F  F  L  A  V  L  K  Y  I  M  D  S  E  R  A  Y  F  F  R  L  Y  V  T  V  C  H  S  L  Y  V  L  C  F  L  R  S  V  H  Y  Q  I  L  L  I  Q  *  L  N  N  I  I  L  Y  S  T  *  L  L  L  F  S  I  D  *  F  S  C  F  L  H  A  F  Y  H  I  F  I  L  H  Y  H  K  V  P  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0147G13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="88281" PGL_stop="87462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88281" e_stop="88105"/>
            <exon e_start="87854" e_stop="87699"/>
            <exon e_start="87615" e_stop="87462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="0.994"/>
          <exon-intron don_prob="0.974" acc_prob="0.781" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="88281" e_stop="88105" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="88104" i_stop="87855" i_length="250"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87854" e_stop="87699" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.781">
            <gDNA_intron_boundary i_start="87698" i_stop="87616" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="87615" e_stop="87462" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88281" stop="88105"/>
              <exon start="87854" stop="87699"/>
              <exon start="87615" stop="87462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGCTGGTGGTTACTAATAAAAGAAAGAAGGGTGGTGATGCTCAGGAAAGGTTCCCAAAGCGTCGCAAGGGAGATTTTAGCTGCACACTTCCGGCAATTGATGGTGCTTCCGCTCAAGTGAGAGGATGGTCTTTTGGGAACTTGTCAAAAAGAGACGCCACACGTTTTTCTCGTGAG : GTCAAGAAGTTTGGGAATGATAGCCAAATTGACTTAATATCATCAGAGGTTGGTGGGGCAGTTGAAGCTGCACCAACTGAAGCTCAAGTTGAGCTTTTTGACTCATTGATTGATGGCTGTAGAGAAGCAGTTAAAGGTGAAGTTGTTGATCCAAAG : GGACCTCTTTTAGATTTTTTTGGTGTTCCTGTGAAGGCTGATGAACTATTGGCCCGTGTTGAGGAACTTCAACTCCTAGCAAAGCGCATTTCTCGATATGCAGATCCTGTCTCACAGTTCCGTGCTTTGGCTTATCTAAAGCCTGCAACTTGGT</gDNA_template>
            <first_frame> P  L  V  V  T  N  K  R  K  K  G  G  D  A  Q  E  R  F  P  K  R  R  K  G  D  F  S  C  T  L  P  A  I  D  G  A  S  A  Q  V  R  G  W  S  F  G  N  L  S  K  R  D  A  T  R  F  S  R  E  :  V  K  K  F  G  N  D  S  Q  I  D  L  I  S  S  E  V  G  G  A  V  E  A  A  P  T  E  A  Q  V  E  L  F  D  S  L  I  D  G  C  R  E  A  V  K  G  E  V  V  D  P  K  :  G  P  L  L  D  F  F  G  V  P  V  K  A  D  E  L  L  A  R  V  E  E  L  Q  L  L  A  K  R  I  S  R  Y  A  D  P  V  S  Q  F  R  A  L  A  Y  L  K  P  A  T  W  </first_frame>
            <second_frame>  R  W  W  L  L  I  K  E  R  R  V  V  M  L  R  K  G  S  Q  S  V  A  R  E  I  L  A  A  H  F  R  Q  L  M  V  L  P  L  K  *  E  D  G  L  L  G  T  C  Q  K  E  T  P  H  V  F  L  V  R :   S  R  S  L  G  M  I  A  K  L  T  *  Y  H  Q  R  L  V  G  Q  L  K  L  H  Q  L  K  L  K  L  S  F  L  T  H  *  L  M  A  V  E  K  Q  L  K  V  K  L  L  I  Q  R :   D  L  F  *  I  F  L  V  F  L  *  R  L  M  N  Y  W  P  V  L  R  N  F  N  S  *  Q  S  A  F  L  D  M  Q  I  L  S  H  S  S  V  L  W  L  I  *  S  L  Q  L  G </second_frame>
            <third_frame>   A  G  G  Y  *  *  K  K  E  G  W  *  C  S  G  K  V  P  K  A  S  Q  G  R  F  *  L  H  T  S  G  N  *  W  C  F  R  S  S  E  R  M  V  F  W  E  L  V  K  K  R  R  H  T  F  F  S  *   : G  Q  E  V  W  E  *  *  P  N  *  L  N  I  I  R  G  W  W  G  S  *  S  C  T  N  *  S  S  S  *  A  F  *  L  I  D  *  W  L  *  R  S  S  *  R  *  S  C  *  S  K   : G  T  S  F  R  F  F  W  C  S  C  E  G  *  *  T  I  G  P  C  *  G  T  S  T  P  S  K  A  H  F  S  I  C  R  S  C  L  T  V  P  C  F  G  L  S  K  A  C  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88281" stop="88105"/>
                    <exon start="87854" stop="87699"/>
                    <exon start="87615" stop="87463"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLVVTNKRKKGGDAQERFPKRRKGDFSCTLPAIDGASAQVRGWSFGNLSKRDATRFSREVKKFGNDSQIDLISSEVGGAVEAAPTEAQVELFDSLIDGCREAVKGEVVDPKGPLLDFFGVPVKADELLARVEELQLLAKRISRYADPVSQFRALAYLKPATW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 24 chains have been computed
$ 
$ memory statistics:
$ 7616 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 1904 bytes was the average size of a spliced alignment
$ 8040 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2680 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 24 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-07 17:38:41
-->
