<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-07 19:42:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E707554" ref_strand="+" ref_description="SGN-E707554 [FA33BD05]">
      <seq>caattctatccatctttcaagtccggtaattcccaaattgttgtatttttgcttgtggaaaagaagatctataccaatctgttatcatcgtgtgttttgataaccctttcatctcaaagtccaccccaaaacctataaagtttcctcaagatcttcctttttatgccacaactactctctttttgctcttgaaattgttcgttctgaactgggggttttcccttttgattttgaacccaaaagtaaaaaaaatgggaaaaaatcaagcttacaaagctatgcagcgagcaaggttgggttctagctcaggtggacctgatgaagttgatgatggaatggtggatggttcttttcatacaccagagtggcatgcggctcgtttagcaagcctcaaaacatctcatacagttacctgggaagagttcaaacagaaacagaaggaagaagaagtgagaaaaggagagctagaagcagacaaagataaaatgatgagggaatacagggctcagctagatgctgaaagggccagcaaactctctcatggaaggaatcattccagcagtaaacacagccgcaaaaaggataagaaggacaaagatgctaggaaacagagaagcaaaaagagaaagttcatatttgaagatcttcagaatggacttgtgtgattgagtactacatttgaatgacacatgtatattacctaaactgattcagcgttcaaggagatattccgattccagctcttcaagctcatcatctgaatcttcaagttctgacgatgaagatagagaatccagaanatcaagatccaagtctaagagaaggaagaaagaaaagaagcatcagttgaggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="7651" stop="16637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7950" g_stop="8287" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8288" i_stop="9265" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9266" g_stop="9367" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="440" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9368" i_stop="10102" i_length="735">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10103" g_stop="10244" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="582" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10245" i_stop="10376" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10377" g_stop="10423" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="629" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10424" i_stop="16111" i_length="5688">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.132" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16112" g_stop="16337" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="855" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E707554" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7950" e_stop="8287"/>
          <exon e_start="9266" e_stop="9367"/>
          <exon e_start="10103" e_stop="10244"/>
          <exon e_start="10377" e_stop="10423"/>
          <exon e_start="16112" e_stop="16337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTATCCATCTTTCAAGTCCGGTAATTCCCAAATTGTTGTATTTTTGCTTGTGGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATGGTTCGTCCCTTTTCACACTATTATTCTTTAATTATTAATACTATTTGAGTTAAAGTTCTTTTTTTTTTTGTTTTGAACTTTTATTTTCTTGTCAAAGGGAATTTGTTTGTCCATTTGGGAATGTGTGTGTGCTGTTTTTGCACATGGGTATCGCTTTATATGAGGTTTTCTGGAGTTTATTTTATCATTTTTGGTTCCAAAGTGTACTTGGTGGTTAGCTGTGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACATTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATATGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACTTTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATACTTTGGAAATTATTTTTGCATATGAAGCTTGAGTGGTTGACAACAATGTTTCAGTGTTGATTGGAGTAACTGATATGGAGAAAGAGTCTTTATACTTTTATAGGAAAATTACTTCTGCCAATAAGTGCGGCGCGGACAATTTCTCCATTTTGGTTTAAAAAATTATTTTCTTTGGAGAGAGCATCTTCCCCGGTTCAAGATAACCAGACATTGATAATGTGAGGGGACACAATCACATAACCATTTAAACAAACTCTATCTGAAAAATGCAAGTGTAAGTCTTTGATTGAGCTTCATGATGGTTAAAGATAAGGAAAAATTATTTCATTGACCGTATAAGACAATTGAAGTTCAATTAGTTCTGAGTAGTTTTAACTTTAGTTCTGTTAGTTTGTGTTTGGTACTTACATTTTTCTCCAACATTTTTCGTAGAGTTTATAAATTTGAGCTAGCTTTTTCTATTTAGTACATTGGAGTCGTCGAGAATTGTATTTTTCTTAGTTTATTGTGCTTCGTCTGATGAGGACTGTCGCAGGTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAGGTAATATACTCAACCGATTTGATGGTCATATGAGGGTGTACATAATCTTGGCTTGCATATCCCGGGTTTGTTTAGTTGGGCTGCGTGATTTCATTCTTGATCAGTAGCTGTTACATCAAACTACAGTTATATAAGAACATGGTTGAATTTGTTGCAAGAAACACTGTTGTGATTGGCTTTAATGATTGTAGAGATATGTGAAGATAGAATGACAACACTTAAGAATTGAACCTTGGAGAATTATAGGAAAAGAGGAACTAAGTATGCTTGGCTATGGTATATAATACTTGATATTTTGCAAACACGACTAGGCCAGCATAAGCTAAGATGCAATGTATTTAGATGGCCTTGCTTTTTTCACTAGGTGGTTAAGTACAACTAGCAAGTCATTGCATAAACTTTTTCTGCAAGTTTTTGAAAATCAGACTCCAGGGTTTGCACCCACTACGTTGACCATTGGACGACACCCTTGGATGCTAAGCAATCTGCTTGTTGGAGAAGTTCTGCATTTTGCAAATGACTTATTTTTTTCCCTCAAAAATGCATATTTGAAGCTCCCTTTCCTTTATTGGGGTCGGGGGTACTAATTTTGGACTATCCATTATAAATTGGCTCTTGTGTGGATCCACTTAGATCATACAATTGCGTGTTACATTGTTTCCTGATATTAAAGTTCTTTTCTTCCCGCTCCATGTCTTAATTTGTTGATGCATAATACTAATGATATTCTTTTAGGAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGGGTAAAATATTCTGAAATTTCTTAATGGGAATCAATTTTTCTAGTTCTTTTAGTTATTTTATATTTTAGTGTGTGTCAAATTTCTAGTTGACTTAGATCGGTTCGTTCTTGATGGTGAAATGCATTTTTACAGATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAGGTGAAGATTTTTTTCAATCTAGACTTTTTTCTTTTCTTTGCTTGTGAGAATGAAAAACTACTACAATCTTGGTCGGATTATGCATGTTTGTCTTGTTATACCATGAAAGAAACATCAATGCTCGAGGAGTTTTGAATTCTATTGGTTTTGCTATACTAAACTTGCAAGTTTCTAGCTAACCTGAATTGTCTTGCTTGGCTCGGTATAGTTTGCATTCATAAATAATGAAACCAAATGCTATTTTTTGGGATCAGAACTTAATCTGTAATTATTCTAATAGAAAAATAATTTATGTAACTTCAACATTACCAGTTTCAAAAACAAAAGTTTATGCGACTGAAAACAGTGAAACCCCTAGTTAAAAGTGTTAATACCCACTTGTATCTTCAGTAAGAATCAGTTAATCCCATTTTTGGTCGATTAGGGGTTCCTCTAGTGTTAGATTTGAAGTCTTCAATTAAGGATTTGGGAGTGGGGGCATTGGTGCTTGGGGTCTCTTCCTTCCATGTCATGGCCAGGACCTCCTGCTAGTCTCATGTTTTCTAGTAGCACCTTTTCGTTTCACTAAGCCCTTTAACTTAAATATACTGTGGCCAATGAAGACCAAAAGAGTAGGAAATTTTAGTTTCAGCTGAGATAAAGAATTGTCTTTTTTTGTTTGATGAAGTAAAGAGATTCATTTAGGAGCATCAGGGTGAAGATTTGTCTTCTTTCCTCATTGCTTTCTTCTGTTGCAGAATGAATCCTTGAGCAGACTTACTAATGAGATTTAAAGGATTCTTGAGTCTGCCTATTATTATGTTAACTTGAGCTGTGTTTATTTTATAAGAACATCCAATATTTACTAGTCCACTGTAATTAAAATAAATGCTTACAATTCCGCCTATATATGTCATGATGAAATTTCAATGTGATAGATTGAATGTTGGATTGGTCCCATTTGATAAGAGAGTAATTTTATACCCAAGGGTGTGTCCTATTGGTCAATGAATTTGGTTGAGAATCATGAGGTCGTAGGTTTAGGTCCCAGCAGAGACAAAGCCACTATGTGATTCTTCTCGTTTCTCCTAGCCTTGGAGGAATGAGTTGGCTGGTACCTGTTGTGGGTGGGAGGTGACATGTATCTCGTGGAATTAGTCGAGGTGCGCACAAGTTGGACTGATTTCAGAGTTATGAAAACAGAGAGAGTAGTTCTCGTGGTTGAGCTCTCTTCTTTCAACCAAAATGTTGGGAGTTTGTGTCAACATCGGTGAAGTGGGGAAACAAATCTTTTGGCTACTCGGTCTCAAGGAAGCGTTTGGGGTTTACAAAATCACCCGAAGAAGTGAGTTGGCCCTGATTTCTTGATTGTTACTTCTCTTGTCTTAAAGGTACGGACTATGTTGTAGTAACATAACATGTCGGAAGAAAGTACATGATAATAAGTTTGACAAGGTAATTATTAGATGATTTTGGAATGAAAGACATATAAAAAACATTTAACAACCTGAAAAGAATAAAATAATTAAAATAAGGGAACTTATATTTGAGTATATGAGGTAAAACTGACACGTGCGAATCTTCAAACTCACAATTGAGAGCTTCATATGTACTTCAATAAGCATCTGCAGGGGTAATTGGTTGACCTAAAATTTTGAACTTAATTAATCTGTTAGCCATCAGTTATCAAGATTCAAGATGTCCTAATTTTAATTAATATGTCTGTCTAATGTTAAATATGCTATAGCAGGTGACCTTAATGAATTTCCATGAAAAATAGCTTAGCAATTGTCAAATAGTCTATATACTTTTTTCTCATATTGAATCATGAATGTAGACGGAAAAATTGTACTTGGAAGGAATGAAGTACTCCCTTATACAAGGAAAGCAAAAAGGAGGGAATTCTCAAATAGTGAAACCTATATTCAGCGCTTACTAACCCCAAACTTGAGTTAATCAAAATTACAAGCCTGCCCATACCACCACAACAGCCTTCTAAAAGCGAAACAGAAGATAAGCTTAAACACCACTTTGAGGGACAGCGATCTTCTACTTTCTTTCTCAAATCTCTTTTTAATTATTTTTACGTATCAATCTTTCTAATTCTTGCTCATTCCTTGTTCACTATACCATTGGTCTAGGTTCATATTTAACAAATAGTATACTATTTAAATATACAACCATACTGTTAATCTAGGTTTATATTTAACATAGTAAACTATAAGTATACCAGTAAACCGTTGATTTAGGTTAATAATTGACAAATAGTATAAAATTGGGGAACTTGGAATTTGTAACAAACTTTCAAGGAAGAACTATTGCAAGTAAAGGATTTGTGGGTAAAACATTCCTAGTGAACTTATTACGAGAAACATATGAACTTGATCACCCGTTGTTGCTTCGCGTGATAACAACGAGGAGGACGCTTCTGAGTGAAAGTAAAGACTCTCTCCACGAGAGAGTGTGTAAGAACCTTGGGTGATTAGGTTTTGGATGTGATTTGTTTCTAGTTTTCTAATAAAAAAAGTAATTTGTTTTTAAAAAGCTGTATAGAGTGCTATGAATGGGTACCAGATGTAATTTTCCGAAAGGTGTGGTAATTTTAAAAAAAAAATTTGTACAATAGATTTTCGTGTATATTTTCTGAAATTAAAAAAAGAAAAGAAAAAGGAATAGATATCAGAAATGTAGTTCTAACATCTATTTTTTTTTATATATTATAAGTATGATACTATGTCTAAGTTGTACAAAATATATTTGATATATGATGAATGACCAAGTATTCCAACTGGTATTCCTTTCTTTTTTTGGTTCTGCATGTTTCCTTTTAACATTACAAGTCTGTAGTACCATATCTCCCTGTTCCTTGCCAATCTAGGCTACTGATGCCATCTTTGTGCAACTGTTGTTGTGTAAAGATAGTTGGGAAGTTCATTGTAGAAGGTTATCACCATATAAATTCTTCATTGCAGAAACCAAATGTGGTGCCCTTTTACGCCTTAAGTGTGACATCCCTCTAGAAGTTCTCCCTTCCTTGTGTTGTTCTTTTCATAGGGATATGTAGAGACCGAGCAAAGATTTGAAGTTTATGGGTTCGGGATTCTAATCCCTCTATGTTACTGGGTTCTAAATTATTAGTTTTTACATATTCAATGGATTTTGTTAATACAAAATACAAAGTTTTGACCAAAGTTACTGTTTGTCTGGACACGTAATATTCACATTAGCTTCGCCCTTGGGGATTCACCATTCAACATGTTCATATGACCAATTTCCACCCCCTATGTTTCATACTCATTGAAAATAATCTTTCACTAACATGCTTGATCCTACGTGCTGTACCATCCTATCCATTTGTGTAGGTATGACACTATTGAATACCCTCGAGTCTTTTATCTCGTGAACCCGTCACCTTCATAGAAGGAGTGGCTAATTTCAATTGCCAAATTAAACCCTCCTACCCTTTTGAGTTACATAAGAAGTTTCTTCCCAATTGCTTTTAGCTTTCCTGCTATGTTGATCGGCACATTAAATACAAAATAGGTCAAAATTTTGGACAAAGTATTCTTAGGAAGTGTCTCCCTCCCCTTTTCATGTTTTTATTTTACTATTTTGTAACCTCTTCTCTACTTTCTCTATCACTGCATTCCATGCTGCTCTCTTCTTGTGTCTTGCACCCAATGATAATTTATTAACTGTCCTTCCTTTCCTTGACTGTGCATCTCCTCAGATATCCTTCAATCACTACTTCATTCATCATCATGATAAGAGTGTCCCTATCACTAATATGTACAACTTAGAGAACAAATTGTCTCTCCTTGTTATAAAACTTTGAGCTGTTGAAGAAATCTGGGGGATTTAATTGACACAAAGCTAAGAACTTAACCATGGATATACAAAATTGGATGCACGATCTTAATTTGTCCCTGAAGCCAATTTTTTCATTATGCAGCCAAGAAGCTCCATTTTGACACGGTCATATGCCTTGTCTAAATTCAGCTTGCAAGGCTCTGCTTCTTATTTTTCATTCTCGAGTTCACTACTTCATCTGGAATCAAACAAACATCCAGCTTCTTTTTTTGTTCCTTCTAAGTATGTGTGTCATTGACATGGTGCTGTCTAAGACCTCAAGTCAAAAGAAAAACACTAATAGCTCTGAAATCCTTGATATTGTATGCCCTGTCTAATAATTTCAATTAAAGAAGAATTAATACTCTTTTCAAATTTTCTTGTAGAATTCAATGTTTTATTGCACTCATGATGTCTTCTTTTAATTACTCTCCAACATTGACAAAATAACTTGTGAAACCGTTAGGGCCTGGTACTTTTCCCTTTGTCCTCTGCGTAGCTACTAATTGCCTCTGATACTTCCTCCTCCAAGAACTTTATCTGGGGCACTCTCTTATTTACTCGCACTTGCTTAACTTCACCCCCAATTTAAGTCTCCTCTCCAATTCCTTATGCCTTGTATATAGAAGCCCTTAATAGCTCTTTTACTTGCTCTTTTTCCTCAAACTTTGTTTTAGCTTTTGCTAATCAGTGGAAAGTTAATGTGGCAGATAGTCAACCTTTTTAGCCGCAACACCATTAATCTTGATCTCTTGGCTAATTGTCGTATTTGTCCACTCCCCCTACCTTTCAATTTTTTCTTGCTTGTTTAAATCCATCTCACTGATTTCATTGCTAACTCTGCAGCCCTTCGTTATATCCCTCAGCTTCCTCCTAACCACTTAGTAATTCCATCTTCAGTCATTTCTACCAGATTTAACTTCCTGGTAAAGAGAAGTGTGGGTGTCCTTGGACTTGATAAACTTCTCCACCAGTTCCCCGATAGTTCTACTTAGTTGCATGCTTTCTGTCACATATTTTCAGATCTGAAAAGGTTTTCAACTTCTTCCATCCTACTACCATCTAGCAAGATGGGCATATGGTTTAATGTGAGCCTGGGAAGAGGAATTTGGGGGCCCTCTGGAAATGTCTCCTCCGACTGTGTCTAGATAAGAAATTTGTCTCATCTCTACAATATTCTTCCCGCTGTCGCATTCAAATTCCCCAATATCTTTCTGGACCCAAGAATCTTTGAGAAATTCCTTTCTTCTCCCTCCTGTCAAGCATTTTCTTATTTCCCTGTTTTGGTCCTGACTCTTCTTTTCGTCCACTTTCTTACTCGTCTTCATTTTGCCCTCTGCTCAACAATCTCCCTATGGCAACCATTCAATACTTGCTCTGTGTGTAACTGATATAGCTGCCCGTCATTTCTTTCATCTGAAATTTATTTTGCTTTAAGGTACCTTTAAGATCAGTAAGAATGCATTGAAAAGACCTAGTAGATAAGTAGAAATAGAGGACCTTCAATCAGAACTAATTCTTGGATTTTTGAGTGTTTGTTTTTCCGTTTTTGTAAGTTTTGCTTTAGACAGATATCTATGTTCCCAGTATGCATCTAACTGAAGGAAATGGCAGATGCATTTTCCATTTTTGTTATCAAGAATTACAAAGGAAAAATTAAATATAATACATAGGGTACTTGGGTCAGAGAGATTCTTAGTCTAAAACACTGGTAGGTGGTATTAGTACAAGAAACTAAACCTAATGTTTTATTCCAGGATAGATAGTTTGTTAGAGACTAGAGAGAATGCAACAACTTTTGCTTAATTACTTGGTACATATTGTGTTAAGAATTTATAAGTTGTTTCTCTGGACTGTCAGTTCATATTTGAAGATCTTCAGAATGGACTTGTGTGATTGAGTACTACATTTGAATGACACATGTATATTACCTAAACTGATTCAGCGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGAGAAGGAAGAAAGAAAAGAAGCATCAGTTGAGGTCG</genome_strand>
        <mrna_strand>CAATTCTATCCATCTTTCAAGTCCGGTAATTCCCAAATTGTTGTATTTTTGCTTGTGGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGG....................................................................................................................................ATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E321341" ref_strand="+" ref_description="SGN-E321341 [cTOB-23-B20]">
      <seq>ggaaaagaagatctataccaatctgttatcatcgtgtgttttgataaccctttcatctcaaagtccaccccaaaacctataaagtttcctcaagatcttcctttttatgccacaactactctctttttgctcttgaaattgttcgttctgaactgggggttttcccttttgattttgaacccaaaagtaaaaaaaatgggaaaaaatcaagcttacaaagctatgcagcgagcaaggttgggttctagctcaggtggacctgatgaagttgatgatggaatggtggatggttcttttcatacaccagagtggcatgcggctcgtttagcaagcctcaaaacatctcatacagttacctgggaagagttcaaacagaaacagaaggaagaagaagtgagaaaaggagagctagaagcagacaaagataaaatgatgagggaatacagggctcagctagatgctgaaagggccagcaaactctctcatggaaggaatcattccagcagtaaacacagccgcaaaaaggataagaaggacaaagatgctaggaaacagagaagcaaaaagagaaagcgttcaaggagatattccgattccagctcttcaagctcatcatctgaatcttcaagttctgacgatgaagatagagaatccagaaaatcaagatccaagtctaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="7706" stop="16602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8006" g_stop="8287" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8288" i_stop="9265" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9266" g_stop="9367" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="384" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9368" i_stop="10102" i_length="735">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10103" g_stop="10244" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="526" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10245" i_stop="10376" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10377" g_stop="10423" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="573" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10424" i_stop="16196" i_length="5773">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16197" g_stop="16302" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="679" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E321341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8006" e_stop="8287"/>
          <exon e_start="9266" e_stop="9367"/>
          <exon e_start="10103" e_stop="10244"/>
          <exon e_start="10377" e_stop="10423"/>
          <exon e_start="16197" e_stop="16302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATGGTTCGTCCCTTTTCACACTATTATTCTTTAATTATTAATACTATTTGAGTTAAAGTTCTTTTTTTTTTTGTTTTGAACTTTTATTTTCTTGTCAAAGGGAATTTGTTTGTCCATTTGGGAATGTGTGTGTGCTGTTTTTGCACATGGGTATCGCTTTATATGAGGTTTTCTGGAGTTTATTTTATCATTTTTGGTTCCAAAGTGTACTTGGTGGTTAGCTGTGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACATTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATATGTAAAATTATGTGCTTCAAGTTGGTTGGTGTGGCAGAGAATGTAAGTATGTTACTTTGGAAAATGATTTTCTATTTCCAGTGTTTGGTTGGTTTAGAAGTTGGTGACATACTTTGGAAATTATTTTTGCATATGAAGCTTGAGTGGTTGACAACAATGTTTCAGTGTTGATTGGAGTAACTGATATGGAGAAAGAGTCTTTATACTTTTATAGGAAAATTACTTCTGCCAATAAGTGCGGCGCGGACAATTTCTCCATTTTGGTTTAAAAAATTATTTTCTTTGGAGAGAGCATCTTCCCCGGTTCAAGATAACCAGACATTGATAATGTGAGGGGACACAATCACATAACCATTTAAACAAACTCTATCTGAAAAATGCAAGTGTAAGTCTTTGATTGAGCTTCATGATGGTTAAAGATAAGGAAAAATTATTTCATTGACCGTATAAGACAATTGAAGTTCAATTAGTTCTGAGTAGTTTTAACTTTAGTTCTGTTAGTTTGTGTTTGGTACTTACATTTTTCTCCAACATTTTTCGTAGAGTTTATAAATTTGAGCTAGCTTTTTCTATTTAGTACATTGGAGTCGTCGAGAATTGTATTTTTCTTAGTTTATTGTGCTTCGTCTGATGAGGACTGTCGCAGGTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAGGTAATATACTCAACCGATTTGATGGTCATATGAGGGTGTACATAATCTTGGCTTGCATATCCCGGGTTTGTTTAGTTGGGCTGCGTGATTTCATTCTTGATCAGTAGCTGTTACATCAAACTACAGTTATATAAGAACATGGTTGAATTTGTTGCAAGAAACACTGTTGTGATTGGCTTTAATGATTGTAGAGATATGTGAAGATAGAATGACAACACTTAAGAATTGAACCTTGGAGAATTATAGGAAAAGAGGAACTAAGTATGCTTGGCTATGGTATATAATACTTGATATTTTGCAAACACGACTAGGCCAGCATAAGCTAAGATGCAATGTATTTAGATGGCCTTGCTTTTTTCACTAGGTGGTTAAGTACAACTAGCAAGTCATTGCATAAACTTTTTCTGCAAGTTTTTGAAAATCAGACTCCAGGGTTTGCACCCACTACGTTGACCATTGGACGACACCCTTGGATGCTAAGCAATCTGCTTGTTGGAGAAGTTCTGCATTTTGCAAATGACTTATTTTTTTCCCTCAAAAATGCATATTTGAAGCTCCCTTTCCTTTATTGGGGTCGGGGGTACTAATTTTGGACTATCCATTATAAATTGGCTCTTGTGTGGATCCACTTAGATCATACAATTGCGTGTTACATTGTTTCCTGATATTAAAGTTCTTTTCTTCCCGCTCCATGTCTTAATTTGTTGATGCATAATACTAATGATATTCTTTTAGGAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGGGTAAAATATTCTGAAATTTCTTAATGGGAATCAATTTTTCTAGTTCTTTTAGTTATTTTATATTTTAGTGTGTGTCAAATTTCTAGTTGACTTAGATCGGTTCGTTCTTGATGGTGAAATGCATTTTTACAGATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAGGTGAAGATTTTTTTCAATCTAGACTTTTTTCTTTTCTTTGCTTGTGAGAATGAAAAACTACTACAATCTTGGTCGGATTATGCATGTTTGTCTTGTTATACCATGAAAGAAACATCAATGCTCGAGGAGTTTTGAATTCTATTGGTTTTGCTATACTAAACTTGCAAGTTTCTAGCTAACCTGAATTGTCTTGCTTGGCTCGGTATAGTTTGCATTCATAAATAATGAAACCAAATGCTATTTTTTGGGATCAGAACTTAATCTGTAATTATTCTAATAGAAAAATAATTTATGTAACTTCAACATTACCAGTTTCAAAAACAAAAGTTTATGCGACTGAAAACAGTGAAACCCCTAGTTAAAAGTGTTAATACCCACTTGTATCTTCAGTAAGAATCAGTTAATCCCATTTTTGGTCGATTAGGGGTTCCTCTAGTGTTAGATTTGAAGTCTTCAATTAAGGATTTGGGAGTGGGGGCATTGGTGCTTGGGGTCTCTTCCTTCCATGTCATGGCCAGGACCTCCTGCTAGTCTCATGTTTTCTAGTAGCACCTTTTCGTTTCACTAAGCCCTTTAACTTAAATATACTGTGGCCAATGAAGACCAAAAGAGTAGGAAATTTTAGTTTCAGCTGAGATAAAGAATTGTCTTTTTTTGTTTGATGAAGTAAAGAGATTCATTTAGGAGCATCAGGGTGAAGATTTGTCTTCTTTCCTCATTGCTTTCTTCTGTTGCAGAATGAATCCTTGAGCAGACTTACTAATGAGATTTAAAGGATTCTTGAGTCTGCCTATTATTATGTTAACTTGAGCTGTGTTTATTTTATAAGAACATCCAATATTTACTAGTCCACTGTAATTAAAATAAATGCTTACAATTCCGCCTATATATGTCATGATGAAATTTCAATGTGATAGATTGAATGTTGGATTGGTCCCATTTGATAAGAGAGTAATTTTATACCCAAGGGTGTGTCCTATTGGTCAATGAATTTGGTTGAGAATCATGAGGTCGTAGGTTTAGGTCCCAGCAGAGACAAAGCCACTATGTGATTCTTCTCGTTTCTCCTAGCCTTGGAGGAATGAGTTGGCTGGTACCTGTTGTGGGTGGGAGGTGACATGTATCTCGTGGAATTAGTCGAGGTGCGCACAAGTTGGACTGATTTCAGAGTTATGAAAACAGAGAGAGTAGTTCTCGTGGTTGAGCTCTCTTCTTTCAACCAAAATGTTGGGAGTTTGTGTCAACATCGGTGAAGTGGGGAAACAAATCTTTTGGCTACTCGGTCTCAAGGAAGCGTTTGGGGTTTACAAAATCACCCGAAGAAGTGAGTTGGCCCTGATTTCTTGATTGTTACTTCTCTTGTCTTAAAGGTACGGACTATGTTGTAGTAACATAACATGTCGGAAGAAAGTACATGATAATAAGTTTGACAAGGTAATTATTAGATGATTTTGGAATGAAAGACATATAAAAAACATTTAACAACCTGAAAAGAATAAAATAATTAAAATAAGGGAACTTATATTTGAGTATATGAGGTAAAACTGACACGTGCGAATCTTCAAACTCACAATTGAGAGCTTCATATGTACTTCAATAAGCATCTGCAGGGGTAATTGGTTGACCTAAAATTTTGAACTTAATTAATCTGTTAGCCATCAGTTATCAAGATTCAAGATGTCCTAATTTTAATTAATATGTCTGTCTAATGTTAAATATGCTATAGCAGGTGACCTTAATGAATTTCCATGAAAAATAGCTTAGCAATTGTCAAATAGTCTATATACTTTTTTCTCATATTGAATCATGAATGTAGACGGAAAAATTGTACTTGGAAGGAATGAAGTACTCCCTTATACAAGGAAAGCAAAAAGGAGGGAATTCTCAAATAGTGAAACCTATATTCAGCGCTTACTAACCCCAAACTTGAGTTAATCAAAATTACAAGCCTGCCCATACCACCACAACAGCCTTCTAAAAGCGAAACAGAAGATAAGCTTAAACACCACTTTGAGGGACAGCGATCTTCTACTTTCTTTCTCAAATCTCTTTTTAATTATTTTTACGTATCAATCTTTCTAATTCTTGCTCATTCCTTGTTCACTATACCATTGGTCTAGGTTCATATTTAACAAATAGTATACTATTTAAATATACAACCATACTGTTAATCTAGGTTTATATTTAACATAGTAAACTATAAGTATACCAGTAAACCGTTGATTTAGGTTAATAATTGACAAATAGTATAAAATTGGGGAACTTGGAATTTGTAACAAACTTTCAAGGAAGAACTATTGCAAGTAAAGGATTTGTGGGTAAAACATTCCTAGTGAACTTATTACGAGAAACATATGAACTTGATCACCCGTTGTTGCTTCGCGTGATAACAACGAGGAGGACGCTTCTGAGTGAAAGTAAAGACTCTCTCCACGAGAGAGTGTGTAAGAACCTTGGGTGATTAGGTTTTGGATGTGATTTGTTTCTAGTTTTCTAATAAAAAAAGTAATTTGTTTTTAAAAAGCTGTATAGAGTGCTATGAATGGGTACCAGATGTAATTTTCCGAAAGGTGTGGTAATTTTAAAAAAAAAATTTGTACAATAGATTTTCGTGTATATTTTCTGAAATTAAAAAAAGAAAAGAAAAAGGAATAGATATCAGAAATGTAGTTCTAACATCTATTTTTTTTTATATATTATAAGTATGATACTATGTCTAAGTTGTACAAAATATATTTGATATATGATGAATGACCAAGTATTCCAACTGGTATTCCTTTCTTTTTTTGGTTCTGCATGTTTCCTTTTAACATTACAAGTCTGTAGTACCATATCTCCCTGTTCCTTGCCAATCTAGGCTACTGATGCCATCTTTGTGCAACTGTTGTTGTGTAAAGATAGTTGGGAAGTTCATTGTAGAAGGTTATCACCATATAAATTCTTCATTGCAGAAACCAAATGTGGTGCCCTTTTACGCCTTAAGTGTGACATCCCTCTAGAAGTTCTCCCTTCCTTGTGTTGTTCTTTTCATAGGGATATGTAGAGACCGAGCAAAGATTTGAAGTTTATGGGTTCGGGATTCTAATCCCTCTATGTTACTGGGTTCTAAATTATTAGTTTTTACATATTCAATGGATTTTGTTAATACAAAATACAAAGTTTTGACCAAAGTTACTGTTTGTCTGGACACGTAATATTCACATTAGCTTCGCCCTTGGGGATTCACCATTCAACATGTTCATATGACCAATTTCCACCCCCTATGTTTCATACTCATTGAAAATAATCTTTCACTAACATGCTTGATCCTACGTGCTGTACCATCCTATCCATTTGTGTAGGTATGACACTATTGAATACCCTCGAGTCTTTTATCTCGTGAACCCGTCACCTTCATAGAAGGAGTGGCTAATTTCAATTGCCAAATTAAACCCTCCTACCCTTTTGAGTTACATAAGAAGTTTCTTCCCAATTGCTTTTAGCTTTCCTGCTATGTTGATCGGCACATTAAATACAAAATAGGTCAAAATTTTGGACAAAGTATTCTTAGGAAGTGTCTCCCTCCCCTTTTCATGTTTTTATTTTACTATTTTGTAACCTCTTCTCTACTTTCTCTATCACTGCATTCCATGCTGCTCTCTTCTTGTGTCTTGCACCCAATGATAATTTATTAACTGTCCTTCCTTTCCTTGACTGTGCATCTCCTCAGATATCCTTCAATCACTACTTCATTCATCATCATGATAAGAGTGTCCCTATCACTAATATGTACAACTTAGAGAACAAATTGTCTCTCCTTGTTATAAAACTTTGAGCTGTTGAAGAAATCTGGGGGATTTAATTGACACAAAGCTAAGAACTTAACCATGGATATACAAAATTGGATGCACGATCTTAATTTGTCCCTGAAGCCAATTTTTTCATTATGCAGCCAAGAAGCTCCATTTTGACACGGTCATATGCCTTGTCTAAATTCAGCTTGCAAGGCTCTGCTTCTTATTTTTCATTCTCGAGTTCACTACTTCATCTGGAATCAAACAAACATCCAGCTTCTTTTTTTGTTCCTTCTAAGTATGTGTGTCATTGACATGGTGCTGTCTAAGACCTCAAGTCAAAAGAAAAACACTAATAGCTCTGAAATCCTTGATATTGTATGCCCTGTCTAATAATTTCAATTAAAGAAGAATTAATACTCTTTTCAAATTTTCTTGTAGAATTCAATGTTTTATTGCACTCATGATGTCTTCTTTTAATTACTCTCCAACATTGACAAAATAACTTGTGAAACCGTTAGGGCCTGGTACTTTTCCCTTTGTCCTCTGCGTAGCTACTAATTGCCTCTGATACTTCCTCCTCCAAGAACTTTATCTGGGGCACTCTCTTATTTACTCGCACTTGCTTAACTTCACCCCCAATTTAAGTCTCCTCTCCAATTCCTTATGCCTTGTATATAGAAGCCCTTAATAGCTCTTTTACTTGCTCTTTTTCCTCAAACTTTGTTTTAGCTTTTGCTAATCAGTGGAAAGTTAATGTGGCAGATAGTCAACCTTTTTAGCCGCAACACCATTAATCTTGATCTCTTGGCTAATTGTCGTATTTGTCCACTCCCCCTACCTTTCAATTTTTTCTTGCTTGTTTAAATCCATCTCACTGATTTCATTGCTAACTCTGCAGCCCTTCGTTATATCCCTCAGCTTCCTCCTAACCACTTAGTAATTCCATCTTCAGTCATTTCTACCAGATTTAACTTCCTGGTAAAGAGAAGTGTGGGTGTCCTTGGACTTGATAAACTTCTCCACCAGTTCCCCGATAGTTCTACTTAGTTGCATGCTTTCTGTCACATATTTTCAGATCTGAAAAGGTTTTCAACTTCTTCCATCCTACTACCATCTAGCAAGATGGGCATATGGTTTAATGTGAGCCTGGGAAGAGGAATTTGGGGGCCCTCTGGAAATGTCTCCTCCGACTGTGTCTAGATAAGAAATTTGTCTCATCTCTACAATATTCTTCCCGCTGTCGCATTCAAATTCCCCAATATCTTTCTGGACCCAAGAATCTTTGAGAAATTCCTTTCTTCTCCCTCCTGTCAAGCATTTTCTTATTTCCCTGTTTTGGTCCTGACTCTTCTTTTCGTCCACTTTCTTACTCGTCTTCATTTTGCCCTCTGCTCAACAATCTCCCTATGGCAACCATTCAATACTTGCTCTGTGTGTAACTGATATAGCTGCCCGTCATTTCTTTCATCTGAAATTTATTTTGCTTTAAGGTACCTTTAAGATCAGTAAGAATGCATTGAAAAGACCTAGTAGATAAGTAGAAATAGAGGACCTTCAATCAGAACTAATTCTTGGATTTTTGAGTGTTTGTTTTTCCGTTTTTGTAAGTTTTGCTTTAGACAGATATCTATGTTCCCAGTATGCATCTAACTGAAGGAAATGGCAGATGCATTTTCCATTTTTGTTATCAAGAATTACAAAGGAAAAATTAAATATAATACATAGGGTACTTGGGTCAGAGAGATTCTTAGTCTAAAACACTGGTAGGTGGTATTAGTACAAGAAACTAAACCTAATGTTTTATTCCAGGATAGATAGTTTGTTAGAGACTAGAGAGAATGCAACAACTTTTGCTTAATTACTTGGTACATATTGTGTTAAGAATTTATAAGTTGTTTCTCTGGACTGTCAGTTCATATTTGAAGATCTTCAGAATGGACTTGTGTGATTGAGTACTACATTTGAATGACACATGTATATTACCTAAACTGATTCAGCGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGA</genome_strand>
        <mrna_strand>GGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGG....................................................................................................................................ATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E397094" ref_strand="+" ref_description="SGN-E397094 [TUS-44-L6]">
      <seq>ttttttttttgtccacccctatttttcatttcagtctaaaataaaatccaccccataactttacatcaaacaactctccatacataagtcagcttcataactaagtgtttgcataagaaactcatccatgttcccggacggaatgcacacatatatacatggggagatatattgtcagttacacataacatgtagatcaaacctgcaacaatctgtcagcaattattcacatgcgctggtattcaggattaaatgcaatcgactccctgtaaattagctccttcatctgttcctctgtaagcgcatgctgctcaaagtcgaaactaaaaggagtcatgcaaatgggctcgtttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="23188" stop="24118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23468" g_stop="23827" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E397094" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23468" e_stop="23827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGATATTGTCCACCAGAATTTTTCATTTCAGTCTAAAATAAAATCCACCCCATAAAGATACATCAAACAACTCTCCATACATAAGTCAGCTTCATAACTAAGTGTTTGCATAAGAAACTCATCCATGTTCCCGGACGGAATGCACACATATATACATGGGGAGATATATTGTCAGTTACACATAACATGTAGATCAAACCTGCAACAATCTGTCAGCAATTATTCACATGCGCTGGTATTCAGGATTAAATGCAATCGACTCCCTGTAAATTAGCTCCTTCATCTGTTCCTCTGTAAGCGCATGCTGCTCAAAGTCGAAGCTAAAAGGAGTCATGCAAATGGGCTCGTCACTGATAT</genome_strand>
        <mrna_strand>TTTTTTTTTTGTCCACCCCTATTTTTCATTTCAGTCTAAAATAAAATCCACCCCATAACTTTACATCAAACAACTCTCCATACATAAGTCAGCTTCATAACTAAGTGTTTGCATAAGAAACTCATCCATGTTCCCGGACGGAATGCACACATATATACATGGGGAGATATATTGTCAGTTACACATAACATGTAGATCAAACCTGCAACAATCTGTCAGCAATTATTCACATGCGCTGGTATTCAGGATTAAATGCAATCGACTCCCTGTAAATTAGCTCCTTCATCTGTTCCTCTGTAAGCGCATGCTGCTCAAAGTCGAAACTAAAAGGAGTCATGCAAATGGGCTCGTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E745945" ref_strand="+" ref_description="SGN-E745945 [GI|47105457]">
      <seq>gggaacaaaattatttccaaaatatggatggttccgttccgcaaacggatacgatgatgtcggatgtggctgcacctccggctcaacaaccacctccgccgtcacaaccgctggctggaatggataatattccggcgacgttaagccatggtggcaggttcattcaatacaatatttttggtaatatttttgaagttactgctaagtataaacctcctataatgccaattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaatctgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaatattgttgcgatcagagatataattccaccaccacagagagaagcctttaacgatgtttacattgcgtatgagcttatggatactgatctccatcaaattattcgctcgaatcagggtttatctgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagacttaaagcctagcaatcttctcttgaatgccaactgtgatttgaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtatcgtccacctgagctgttgttgaattcatccgactatactgcagcaattgatgtatggtcagtgggttgcatcttcatggagttgatggacagaaaacccctcttccctggcagagatcatgtacaccagctgcgtcttattatggagttgattggcactccttcagaggctgaaatggaatttttaaatgagaatgcaaaacgctatatccgacaacttcctctttaccgtcgacaatcatttactgaaaagttcccgcatgtaaacccagctgctattgatcttgtcgggaaaatgttgacatttgatcccagaaggagaataacagttgaagacgctcttgcacatccttacctaacatcgctccatgatatcagtgacgagcccatttgcatgactccttttagcttcgactttgagcagcatgcgcttacagaggaacagatgaaggagctaatttacagggagtcgattgcatttaatcctgaataccagcgcatgtgaataattgctgacagattgttgcaggtttgatctacatgttatgtgtaactgacaatatatctccccatgtatatatgtgtgcattccgtccgggaacatggatgagtttcttatgcaaacacttagttatgaagctgacttatgtatggagagttgtttgatgtatctttatggggtggattttattttagactgaaatgaaaaattctggtggacgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="34628" stop="23174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34330" g_stop="34075" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34074" i_stop="33919" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33918" g_stop="33789" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="386" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33788" i_stop="33320" i_length="469">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33319" g_stop="33182" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="524" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33181" i_stop="30941" i_length="2241">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30940" g_stop="30608" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="857" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30607" i_stop="30114" i_length="494">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30113" g_stop="29933" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="1038" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29932" i_stop="23870" i_length="6063">
            <donor d_prob="0.927" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23869" g_stop="23477" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1039" r_stop="1431" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1432" polyA_stop="1450"/>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E745945" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1431</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34330" e_stop="34075"/>
          <exon e_start="33918" e_stop="33789"/>
          <exon e_start="33319" e_stop="33182"/>
          <exon e_start="30940" e_stop="30608"/>
          <exon e_start="30113" e_stop="29933"/>
          <exon e_start="23869" e_stop="23477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAGGTATCTATTGTTCACTATCTACCCCTGCCCCCCTTACACTAAAGAAGTGAGTTTCCTAAGTTTTTGTTCTTTTATCTCATTTTTCGTATTTCACCTCTTTGTACTGGCTGTTTTGTGCAAATCCATTTAAAAGAAAAGAGTAACATCAAGTTGTAGATCTGGGAAACTTAATGGAGAAGCCTTAGACAGAGTGTAGTTTTATTTTTGAACCGTTGCTTCTCTACGTCAAGAATTACAACTGATCAACTATGCTTTCTTCTCAGCAAGTGTTATGCACATATGTAGTATGTGATCTTAAGAAGGAAAACAAATTTACCTGCCACTCTCTTTCAGTCTTTCCTATAAGAAGATGAACAATGCATGATTATTTTGTATTATGAATATATAGTTTTTCATAGTAATGGCCCGAATCTCTTTTATTATCTTACATTATGCTCAAATTAATAGATGTGATTAATACTTAAATTTATTATGATGACCGCAACTTCATGCAGTTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAGGTGCGAATTTCCAGACTAGTTTTTCTCATAGCTGCATTAATCAATTCTCTATCTGCATCTTACACTCTTTTCTTGAACTGTACAAATGTTCACTTGTTTTATTGCAAGAGATCAATCAATTATTCTCTCCTTTTTTCTCATCAATGAAGGAAAACAGAATCTATTTCAAGTAAGTATTTTATTGATGTGTAGCAAAAAAAAACAGCATTTAGGAACCGTGGATGAGAAGTACATCTGAAAGAGAATTTTACTATGTATGTAAAAGAGCCAAAAGAATTCAACAATCATGCCTGGCTCTAAAACATAATTCGGACCTTCGTTGAACCAAAATCTAAGCAATGCTATACTCTTTAGCTTAAATTTAATAATGTTTCCCTTCTTGTCTTCAAAAACTCTAGCATTCCTCTCTCGCAATACGACCCACCAAACGACAGCAGAATTGTGAGTCCCTGATGTTTTTCGGCATACACCAATTCAAGCCCCAAATGATTTGAAAAGAGATGCTAAATCTGTTGGGTAAACTTGCTTATCAATGGTGAGACATCTTCCTTGGGCTACAATCTAAGATACACACTTGATCTTATATAGAACCAGATTCTTCAATGAAATCTTCCAAGGCCAGGAGACATAGTTGGGAAGGGGTTAGTCAAGTCTGCATAATAGTAGAGAGAATTCCATTTTGGGAGTGTTTCCAGATGACGGAATCTAGCTGAGAGATCAGAGGAGGGACAGGGTTTTGCTGATTCATCATAGCACAAAATTCATCAATTGCCCAATCATTGAGGTTTCTCCTACATGGAATGAGCCATCCTTGATGTGGCTGAAGTTCGGTTGATACAGAGTCTTGGTTGGATTCATATCTAAAACGAAAAGGGAATCTGCTCATGAGAGGGGTGTGGCCAAGCCACGAATGTTGCCAAAATCTAATCTTTCTACCATCACCTACTCTAAAGAACATTGTTCCCAAGTCTAGGTTCGAAGAGCAACATCAAAGAGTTATCACTAAGCATTACGAAGTTGCTATCATTAGAGTTGACGATTAAGCAATATACCCCCATGGCTTGGGAAGGGCCATAAATAAGTACCAACACAAACCAATCTTAGCTTGAAAAGTATGGGAACATTTAACCCCGTTGTTTGCCAAGTTGGTGACTTTAGATCTCTTGAACCTTCACAAAGAATCCAAGAAAGTAAGCTGGGACCCCTTCATTGCAATCGACCTTATCCTTAAGTACTTCCTACATTTGTGTTACCTGTTCAATGTAAACCCATCTTGTTGATTGTTAAATCAAAGGCAAACCCTTTTCTCTATATGCTTTCTTTTATTCCTTCTTCTCTTTGAAACTTAGGAAATTCTCTCTTCATTCCCAACTTGCTTTCCCTTAACAATGTCACATCTAGTGAACTCAACTAGACTTCCCTGAGCAACAAAATCAACTGGTTGCTCCATATAAACTTCATTCTCAAGGTCAGCGCAGAAAAAATCATTCTTGATTTCCAACTGATAATGAGGCCGGCGGAGGACAACAACTATGTATTGATAAAGATGGAAAAATGCTTAGCCACAATAGAGAAAGTATCACTATAATCAAGCCTAAATATCTGAGTATACCCATTGGGACCAAGGCTGGCCTTAACCAATTAACATGGTCACTCGTACCAATTTTGACTGCATAAACCCAACTACAACCAACAATAGATTTATGAAGAAAGGAGAACAAGCTCCCAAGTATCACTTGTGTGTAGAACAAATGTTCTGTCATCCTTGATGAGAAAATGCATCACTCGTAGATTTAGGAATGGAAATAGAAGACAAAGATGATACAAAGGCATAGTGGGGTGATGACTGACTGTGATAACTTCAAAATATATAATGGGGATTAGTATTACCAGCGGATTGTATACCCTTTTGGAGTAAATTGGTTGATTAAGAGGAGATAAGTCTGCAGTAGGCACAGGGTTTGGCATAAGAGGTGAATCATCTGAGCTTGATGCTGGACGTGAATGACGGGAAGTTATGATTGGTGGCTGGAGATGTAGTATGTTAAACTTTGTAAATATTAGGATGATAAAATAAGATGTATATTAAGGTCGAGACTAAATATGTGACCTCGACCGACTTAAGGTACCAACAAAGATTAGGTGAGTAGTAATGATACCTCTTTTGATCTCCACTGTTTATCATTTCCTCCTTCCAAACTCTTTTTTCCCATAACACTAATATCCCCATCACTTCTTCCATTAGCCTCTAAAATGGACTTCTCTCAACCATCTGTTGTTCCAGATTTGTCGGTAGAGATTTGGATTAGTACTTGTTAGCTTAGTTTCAACCAACACATGAATGTCAGCCGGCCCACTGAAGCAACAGATTTCTTACAAGTGTTCTTTTGCTCTCCCCATTTAACCCTCTTAACATTCCAAGATAAAAAAAAATTATCTTCATGATAAACCCTTGTGTGAGATTCTCCCTCTTGTTCTTGGCTCCCCTTCTTTGAATTTCACATCAAAAGCCAAATTCCTAAATTTTAGGAATTACTGCTGTGAGATTATCCTGCTTGTCATTCCTCCTTTTGTTTTGGTCCATCCCCATCCTTTGATCGATCCTTAATAGCAATTCATATGCTATGTCCTCACAACCCGCAAAAGCTGCACCAAATTTTTTCCCTAATTTGATGATATTTGAGTGTATCCACAATGTTGCTTTCTCCTTCACTTCTTCCTCACCGATCGATTCGTGCACTTGTAGTGGCTCTATCTCATTAAAATTTATCATCTACTTTGGGTTACTCTCCTGGGTTCCTTCTTTTTCCCAAGGTTGAATTTCCATGGAGCTACTTCCAACTATGTTCTTTTCACCGTGAAGAATATGGATTTCCATGAAATGCATCTTTCCTCTCTCTGCTTTTCTGTTATGATTCTGATAGACTCCTGTTCATCAGCAAAGATGCGGAAATCCTGATTTTGTCCCGTACTCTTTGGATGAGTATGGATATTATCTATGAAAGGCTCAGCCGTTTTAATTACTGAGGGCTTTGGTGACTTGGGTTTAAAAAAAACTTAATACTTTGTCCTTCAGCTGCCCCTGGCCTGCCTAAGTCTTTGGCCAGAATAATTTAGTCCACTAGTGCTAGGTGTCTCCATTGGCCCAACCTATGTGGACCCTCTCCCACATGTCACCCCCCTGCTTCTATCCTACGTGCCTTCAATCTCCAGCTCCTCAATATCCATTGGATATATTCCAGCCCTCCTTTTCCCTTCAGAGTGCCGAGCTGACTATCTACCTTATTCTGGCTCTTGTCACTCTCATCTCGATGGTCAAGCTTGCGATCATTGACCTTTTGTATCTTGCCAGAGCTTCTACCCAGATCGGTGGAAGAACACTATGTCACCATCTGCGACCTCTACAAAGCATGGAATTTCCTTGAGAGGTCCCTTCGCCTTGGTGTGAGCCCATCTCATATGGTTCTTGAGTAGCATTTCTTCTTCTGCCTCTAACCAACCACCGCACTTGTCCCCTATTTTCTTTATCACGTGTTCTGATCAGAGCTCAAGTGGGATCCCAAGGGCTCTTATCCAGAAAGAGTCACATTTTTATTGGATGGATAAGCCCCTGTTGTTGGAGACCACCACTGGACTTTCAAGCTCATCCGCTGTCTCATCCATCTCCCCCCAGAATGTGTTCAGCGATCTTTCGAGACTGGGTGGTTATGGACCCCTTTCCACGACTGTTCTACCCATTCCTTACATCGTTAAGGGTGGGGATCTCATCATACTCTGGAAATTACGCACTAGGAATCTGCTTAGGAGTTCATTTCTGCCTTTGGATTTGCAGGCATCAAGAGAGTTAACTTCCTGCTGTGTCTCTTGTTACTTTTGGGCCCATATGTTTCTGTGTATTGCTTCTTTATAGTTCTTTTTCTCTTTTGTGTATTAGAATGTATACTCTCGTTGGCATTTAACACGAGCTGTGTATTTGGACCATTTATGATGCCTTCAATTTTGTTGCAAGCCCCAACAAACTCCTTATTACAGCTGTTCTCCGGCAGAATTATTACTGATCTGGATGAACCATTTACTCCAATCATATATATGAATCTACCATATTTATTGAACCTAAAGGAGAAGCGAAAATAGGTAACCAGATCTCTGCCTCTCCATGATTTAAAAGCTTTCCCCCTTGTGTCTGATGCCTCTCGCAGCCTCTTGACTAAACAAGGCTACCTAACTAAGTGTCATCCTTCGCGCGTGGAGCTTTGATTCTCCACCCAGTCGAACCAAGTTCCGTTAGAGGATTTTGTCTGGTTTATATCATATGATTTTACACCCCACCCCCCACCCCCAAGTCTGACATAAATACGGTTCTCCATTAGAGGATGGGTTCTGGTGGTCAAATACCAACTGAAGTATTGTCTGGAAAGTCCTAGAGGGGCTCTAAGAAGCCCTGCCTAGGAACTCATGCTAGGGAGCATTTTTATAATATATTATTTTTTGCATCCTGTGACCTAAGTGATCCTAAATTATGTACAAATATCAGTCAATATTCTGAGATGATAAGAACCCTAGCTCCTTTTTTTACAAAATCAGTAACTAACCTGGAAGCTAAGAGATGAAAATTGAGCTTAATGGGAAAAAACAAGGCGGGGAGAAGGGTTTAGAGGCACAAACCACAGCGGAACCATGGCCCGAAAGGAAGAGACCCAATTTTGATTTTAACAGATGACCCCCTTAAGTTGTTAACCTATTTCTGTTTCTTTTTATTTCTGCTAGATGGAAATATATTTCCATGTGAAGTGCCACATGAACACCCTTTTTTAACATAAAAAGGAGTGTACCACACACCATCAACATTTCATCTAGGTTTGTTTTAATCTATGTTGCTCAGGCTCTTCAAAAATGTAATTTTTGGAGAATCGACATGGGTGCGGCATCAGAAGTGAAGAATCTGTGCAAGTTAGGTTTTAATACATATATAGGATAGTTTAGGTAGGGTATAAGGAACGAGTAGTTGGGGATTGAAATTTGCGAAAAACTGATAGTTCATGTGTTTTTGACGAAAAAACAGCTCGTTGAGCTTCCGAGAATGGGGGATTTTCAGCAGTTGCTCAAACCGGATCTTTCAGTGGCCAACTGTAAGATTTCAACTCAAAATTGAGGCGAACAATCTATTTACTCGATAGAACTCACAATAGAATTCCAGGAAGTTTCAGAGAGGTTTAAACCAATAACAAAATAAGAATAGTGAAGAATGAAGGACGTGCATGGTTTTTCTATTTTGGGATTTTAGATTTTTGAAAATTTTCTGAGATAGAAAATCAAATCCTAGACTGTGTTAATTAAAAAAAACACTAATCTGAGTTCTGAACTGAATGATAACTTTCAAATTCAAGAATACAGAGTTGGAGAAACTATACACAAGTTAAGAAATAATAACTGTCAATTAGATGTGTCTTCCTATCCCTCTAGTATAGCATCGTCACCCTTAATATGTAATATGAGGGTAGAAGTTTGGAAATTAGCTGATTGGAGTTCGGCAGAAGTTAAGAGATGGACTCATTAAAGCATATTTCTAAAATTCTCTCTAAAAGGTTACTTTTAGATTTTGGTGTTTCGAATATACTTATTTGTATCAGTTGTATCATTTGCATCTCCCTGCATCCTAGAAAATTGTTGAGTTTGTCATGAGTTGCAACTTCTCTGTGCAAGGCTGCACTTAACATAGCTAAAGGAAAACTTGATCAAACATATATATGAGTGTAAATGCTAAAGCTTCTTAGGAGAAGTGCTACCGCCACTTCTTTAGTGGATAGTGGATACTGAGTTGATTTCTCAGCCTGTATGAATTGAAATTGTACTTAATATACTGGTATCGCTTTCAAATGATGTGCAAGAGTTTGAATAACACATTTTCCTTAAAAATTCAGTGTTTAGCTCTTTTCATTGGTTAATAGTAATTATTTTCTTTCCATGCTTACAAACTGCTGCAATTAGATGGCCTTCTCTTTAATGCTTATATATCTAATTGGTCCGAATACTAATCCCCTTTCTGTACTCTCCTCTTTTCAGTTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGACA</genome_strand>
        <mrna_strand>GGGAACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGGGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E744684" ref_strand="+" ref_description="SGN-E744684 [GI|30962144]">
      <seq>gccaaaatatggatggttccgttccgcaaacggatacgatgatgtcggatgtggctgcacctccggctcaacaaccacctccgccgtcacaaccgctggctggaatggataatattccggcgacgttaagccatggtggcaggttcattcaatacaatatttttggtaatatttttgaagttactgctaagtataaacctcctataatgccaattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaatctgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaatattgttgcgatcagagatataattccaccaccacagagagaagcctttaacgatgtttacattgcgtatgagcttatggatactgacctgcatcaaattattcgctcgaatcagggtttatctgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagacttaaagcctagcaatcttctcttgaatgccaactgtgatttgaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtatcgtggacctgagctgttgttgaattcatccgactatactgcagcaattgatgtatggtcagtgggttgcatcttcatggagttgatggacagaaaacccctcttccctggcagagatcatgtacaccagctgcgtcttattatggagttgattggcactccttcagaggctgaaatggaatttttaaatgagaatgcaaaacgctatatccgacaacttcctctttaccgtcgacaatcatttactgaaaagttcccgcatgtaaacccagctgctattgatcttgtcgagaaaatgttgacatttgatcccagaaggagaataacagttgaagacgctcttgcacatccttacctaacatcgctccatgatatcagtgacgagcccatttgcatgactccttttagcttcgactttgagcagcatgcgcttacagaggaacagatgaaggagctaatttacagggagtcgattgcatttaatcctgaataccagcgcatgtgaataattgctgacagattgttgcaggtttgatctacatgttatgtgtaactgacaatatatctccccatgtatatatgtgtgcattccgtccgggaacatggatgagtttcttatgcaaacacttagttatgaagctgacttatgtatggacacttgtttgatgatctttatggggtggattttattttagactgaatgaaattctggtggacaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="34614" stop="23191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34315" g_stop="34075" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34074" i_stop="33919" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33918" g_stop="33789" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="371" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33788" i_stop="33320" i_length="469">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33319" g_stop="33182" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="509" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33181" i_stop="30941" i_length="2241">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30940" g_stop="30608" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="842" r_length="333" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30607" i_stop="30114" i_length="494">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30113" g_stop="29933" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="1023" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29932" i_stop="23870" i_length="6063">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23869" g_stop="23477" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1024" r_stop="1412" r_length="389" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1413" polyA_stop="1432"/>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E744684" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1416</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34315" e_stop="34075"/>
          <exon e_start="33918" e_stop="33789"/>
          <exon e_start="33319" e_stop="33182"/>
          <exon e_start="30940" e_stop="30608"/>
          <exon e_start="30113" e_stop="29933"/>
          <exon e_start="23869" e_stop="23477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAGGTATCTATTGTTCACTATCTACCCCTGCCCCCCTTACACTAAAGAAGTGAGTTTCCTAAGTTTTTGTTCTTTTATCTCATTTTTCGTATTTCACCTCTTTGTACTGGCTGTTTTGTGCAAATCCATTTAAAAGAAAAGAGTAACATCAAGTTGTAGATCTGGGAAACTTAATGGAGAAGCCTTAGACAGAGTGTAGTTTTATTTTTGAACCGTTGCTTCTCTACGTCAAGAATTACAACTGATCAACTATGCTTTCTTCTCAGCAAGTGTTATGCACATATGTAGTATGTGATCTTAAGAAGGAAAACAAATTTACCTGCCACTCTCTTTCAGTCTTTCCTATAAGAAGATGAACAATGCATGATTATTTTGTATTATGAATATATAGTTTTTCATAGTAATGGCCCGAATCTCTTTTATTATCTTACATTATGCTCAAATTAATAGATGTGATTAATACTTAAATTTATTATGATGACCGCAACTTCATGCAGTTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAGGTGCGAATTTCCAGACTAGTTTTTCTCATAGCTGCATTAATCAATTCTCTATCTGCATCTTACACTCTTTTCTTGAACTGTACAAATGTTCACTTGTTTTATTGCAAGAGATCAATCAATTATTCTCTCCTTTTTTCTCATCAATGAAGGAAAACAGAATCTATTTCAAGTAAGTATTTTATTGATGTGTAGCAAAAAAAAACAGCATTTAGGAACCGTGGATGAGAAGTACATCTGAAAGAGAATTTTACTATGTATGTAAAAGAGCCAAAAGAATTCAACAATCATGCCTGGCTCTAAAACATAATTCGGACCTTCGTTGAACCAAAATCTAAGCAATGCTATACTCTTTAGCTTAAATTTAATAATGTTTCCCTTCTTGTCTTCAAAAACTCTAGCATTCCTCTCTCGCAATACGACCCACCAAACGACAGCAGAATTGTGAGTCCCTGATGTTTTTCGGCATACACCAATTCAAGCCCCAAATGATTTGAAAAGAGATGCTAAATCTGTTGGGTAAACTTGCTTATCAATGGTGAGACATCTTCCTTGGGCTACAATCTAAGATACACACTTGATCTTATATAGAACCAGATTCTTCAATGAAATCTTCCAAGGCCAGGAGACATAGTTGGGAAGGGGTTAGTCAAGTCTGCATAATAGTAGAGAGAATTCCATTTTGGGAGTGTTTCCAGATGACGGAATCTAGCTGAGAGATCAGAGGAGGGACAGGGTTTTGCTGATTCATCATAGCACAAAATTCATCAATTGCCCAATCATTGAGGTTTCTCCTACATGGAATGAGCCATCCTTGATGTGGCTGAAGTTCGGTTGATACAGAGTCTTGGTTGGATTCATATCTAAAACGAAAAGGGAATCTGCTCATGAGAGGGGTGTGGCCAAGCCACGAATGTTGCCAAAATCTAATCTTTCTACCATCACCTACTCTAAAGAACATTGTTCCCAAGTCTAGGTTCGAAGAGCAACATCAAAGAGTTATCACTAAGCATTACGAAGTTGCTATCATTAGAGTTGACGATTAAGCAATATACCCCCATGGCTTGGGAAGGGCCATAAATAAGTACCAACACAAACCAATCTTAGCTTGAAAAGTATGGGAACATTTAACCCCGTTGTTTGCCAAGTTGGTGACTTTAGATCTCTTGAACCTTCACAAAGAATCCAAGAAAGTAAGCTGGGACCCCTTCATTGCAATCGACCTTATCCTTAAGTACTTCCTACATTTGTGTTACCTGTTCAATGTAAACCCATCTTGTTGATTGTTAAATCAAAGGCAAACCCTTTTCTCTATATGCTTTCTTTTATTCCTTCTTCTCTTTGAAACTTAGGAAATTCTCTCTTCATTCCCAACTTGCTTTCCCTTAACAATGTCACATCTAGTGAACTCAACTAGACTTCCCTGAGCAACAAAATCAACTGGTTGCTCCATATAAACTTCATTCTCAAGGTCAGCGCAGAAAAAATCATTCTTGATTTCCAACTGATAATGAGGCCGGCGGAGGACAACAACTATGTATTGATAAAGATGGAAAAATGCTTAGCCACAATAGAGAAAGTATCACTATAATCAAGCCTAAATATCTGAGTATACCCATTGGGACCAAGGCTGGCCTTAACCAATTAACATGGTCACTCGTACCAATTTTGACTGCATAAACCCAACTACAACCAACAATAGATTTATGAAGAAAGGAGAACAAGCTCCCAAGTATCACTTGTGTGTAGAACAAATGTTCTGTCATCCTTGATGAGAAAATGCATCACTCGTAGATTTAGGAATGGAAATAGAAGACAAAGATGATACAAAGGCATAGTGGGGTGATGACTGACTGTGATAACTTCAAAATATATAATGGGGATTAGTATTACCAGCGGATTGTATACCCTTTTGGAGTAAATTGGTTGATTAAGAGGAGATAAGTCTGCAGTAGGCACAGGGTTTGGCATAAGAGGTGAATCATCTGAGCTTGATGCTGGACGTGAATGACGGGAAGTTATGATTGGTGGCTGGAGATGTAGTATGTTAAACTTTGTAAATATTAGGATGATAAAATAAGATGTATATTAAGGTCGAGACTAAATATGTGACCTCGACCGACTTAAGGTACCAACAAAGATTAGGTGAGTAGTAATGATACCTCTTTTGATCTCCACTGTTTATCATTTCCTCCTTCCAAACTCTTTTTTCCCATAACACTAATATCCCCATCACTTCTTCCATTAGCCTCTAAAATGGACTTCTCTCAACCATCTGTTGTTCCAGATTTGTCGGTAGAGATTTGGATTAGTACTTGTTAGCTTAGTTTCAACCAACACATGAATGTCAGCCGGCCCACTGAAGCAACAGATTTCTTACAAGTGTTCTTTTGCTCTCCCCATTTAACCCTCTTAACATTCCAAGATAAAAAAAAATTATCTTCATGATAAACCCTTGTGTGAGATTCTCCCTCTTGTTCTTGGCTCCCCTTCTTTGAATTTCACATCAAAAGCCAAATTCCTAAATTTTAGGAATTACTGCTGTGAGATTATCCTGCTTGTCATTCCTCCTTTTGTTTTGGTCCATCCCCATCCTTTGATCGATCCTTAATAGCAATTCATATGCTATGTCCTCACAACCCGCAAAAGCTGCACCAAATTTTTTCCCTAATTTGATGATATTTGAGTGTATCCACAATGTTGCTTTCTCCTTCACTTCTTCCTCACCGATCGATTCGTGCACTTGTAGTGGCTCTATCTCATTAAAATTTATCATCTACTTTGGGTTACTCTCCTGGGTTCCTTCTTTTTCCCAAGGTTGAATTTCCATGGAGCTACTTCCAACTATGTTCTTTTCACCGTGAAGAATATGGATTTCCATGAAATGCATCTTTCCTCTCTCTGCTTTTCTGTTATGATTCTGATAGACTCCTGTTCATCAGCAAAGATGCGGAAATCCTGATTTTGTCCCGTACTCTTTGGATGAGTATGGATATTATCTATGAAAGGCTCAGCCGTTTTAATTACTGAGGGCTTTGGTGACTTGGGTTTAAAAAAAACTTAATACTTTGTCCTTCAGCTGCCCCTGGCCTGCCTAAGTCTTTGGCCAGAATAATTTAGTCCACTAGTGCTAGGTGTCTCCATTGGCCCAACCTATGTGGACCCTCTCCCACATGTCACCCCCCTGCTTCTATCCTACGTGCCTTCAATCTCCAGCTCCTCAATATCCATTGGATATATTCCAGCCCTCCTTTTCCCTTCAGAGTGCCGAGCTGACTATCTACCTTATTCTGGCTCTTGTCACTCTCATCTCGATGGTCAAGCTTGCGATCATTGACCTTTTGTATCTTGCCAGAGCTTCTACCCAGATCGGTGGAAGAACACTATGTCACCATCTGCGACCTCTACAAAGCATGGAATTTCCTTGAGAGGTCCCTTCGCCTTGGTGTGAGCCCATCTCATATGGTTCTTGAGTAGCATTTCTTCTTCTGCCTCTAACCAACCACCGCACTTGTCCCCTATTTTCTTTATCACGTGTTCTGATCAGAGCTCAAGTGGGATCCCAAGGGCTCTTATCCAGAAAGAGTCACATTTTTATTGGATGGATAAGCCCCTGTTGTTGGAGACCACCACTGGACTTTCAAGCTCATCCGCTGTCTCATCCATCTCCCCCCAGAATGTGTTCAGCGATCTTTCGAGACTGGGTGGTTATGGACCCCTTTCCACGACTGTTCTACCCATTCCTTACATCGTTAAGGGTGGGGATCTCATCATACTCTGGAAATTACGCACTAGGAATCTGCTTAGGAGTTCATTTCTGCCTTTGGATTTGCAGGCATCAAGAGAGTTAACTTCCTGCTGTGTCTCTTGTTACTTTTGGGCCCATATGTTTCTGTGTATTGCTTCTTTATAGTTCTTTTTCTCTTTTGTGTATTAGAATGTATACTCTCGTTGGCATTTAACACGAGCTGTGTATTTGGACCATTTATGATGCCTTCAATTTTGTTGCAAGCCCCAACAAACTCCTTATTACAGCTGTTCTCCGGCAGAATTATTACTGATCTGGATGAACCATTTACTCCAATCATATATATGAATCTACCATATTTATTGAACCTAAAGGAGAAGCGAAAATAGGTAACCAGATCTCTGCCTCTCCATGATTTAAAAGCTTTCCCCCTTGTGTCTGATGCCTCTCGCAGCCTCTTGACTAAACAAGGCTACCTAACTAAGTGTCATCCTTCGCGCGTGGAGCTTTGATTCTCCACCCAGTCGAACCAAGTTCCGTTAGAGGATTTTGTCTGGTTTATATCATATGATTTTACACCCCACCCCCCACCCCCAAGTCTGACATAAATACGGTTCTCCATTAGAGGATGGGTTCTGGTGGTCAAATACCAACTGAAGTATTGTCTGGAAAGTCCTAGAGGGGCTCTAAGAAGCCCTGCCTAGGAACTCATGCTAGGGAGCATTTTTATAATATATTATTTTTTGCATCCTGTGACCTAAGTGATCCTAAATTATGTACAAATATCAGTCAATATTCTGAGATGATAAGAACCCTAGCTCCTTTTTTTACAAAATCAGTAACTAACCTGGAAGCTAAGAGATGAAAATTGAGCTTAATGGGAAAAAACAAGGCGGGGAGAAGGGTTTAGAGGCACAAACCACAGCGGAACCATGGCCCGAAAGGAAGAGACCCAATTTTGATTTTAACAGATGACCCCCTTAAGTTGTTAACCTATTTCTGTTTCTTTTTATTTCTGCTAGATGGAAATATATTTCCATGTGAAGTGCCACATGAACACCCTTTTTTAACATAAAAAGGAGTGTACCACACACCATCAACATTTCATCTAGGTTTGTTTTAATCTATGTTGCTCAGGCTCTTCAAAAATGTAATTTTTGGAGAATCGACATGGGTGCGGCATCAGAAGTGAAGAATCTGTGCAAGTTAGGTTTTAATACATATATAGGATAGTTTAGGTAGGGTATAAGGAACGAGTAGTTGGGGATTGAAATTTGCGAAAAACTGATAGTTCATGTGTTTTTGACGAAAAAACAGCTCGTTGAGCTTCCGAGAATGGGGGATTTTCAGCAGTTGCTCAAACCGGATCTTTCAGTGGCCAACTGTAAGATTTCAACTCAAAATTGAGGCGAACAATCTATTTACTCGATAGAACTCACAATAGAATTCCAGGAAGTTTCAGAGAGGTTTAAACCAATAACAAAATAAGAATAGTGAAGAATGAAGGACGTGCATGGTTTTTCTATTTTGGGATTTTAGATTTTTGAAAATTTTCTGAGATAGAAAATCAAATCCTAGACTGTGTTAATTAAAAAAAACACTAATCTGAGTTCTGAACTGAATGATAACTTTCAAATTCAAGAATACAGAGTTGGAGAAACTATACACAAGTTAAGAAATAATAACTGTCAATTAGATGTGTCTTCCTATCCCTCTAGTATAGCATCGTCACCCTTAATATGTAATATGAGGGTAGAAGTTTGGAAATTAGCTGATTGGAGTTCGGCAGAAGTTAAGAGATGGACTCATTAAAGCATATTTCTAAAATTCTCTCTAAAAGGTTACTTTTAGATTTTGGTGTTTCGAATATACTTATTTGTATCAGTTGTATCATTTGCATCTCCCTGCATCCTAGAAAATTGTTGAGTTTGTCATGAGTTGCAACTTCTCTGTGCAAGGCTGCACTTAACATAGCTAAAGGAAAACTTGATCAAACATATATATGAGTGTAAATGCTAAAGCTTCTTAGGAGAAGTGCTACCGCCACTTCTTTAGTGGATAGTGGATACTGAGTTGATTTCTCAGCCTGTATGAATTGAAATTGTACTTAATATACTGGTATCGCTTTCAAATGATGTGCAAGAGTTTGAATAACACATTTTCCTTAAAAATTCAGTGTTTAGCTCTTTTCATTGGTTAATAGTAATTATTTTCTTTCCATGCTTACAAACTGCTGCAATTAGATGGCCTTCTCTTTAATGCTTATATATCTAATTGGTCCGAATACTAATCCCCTTTCTGTACTCTCCTCTTTTCAGTTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGACA</genome_strand>
        <mrna_strand>GCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGACCTGCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTGGACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGACACTTGTTTGATG-ATCTTTATGGGGTGGATTTTATTTTAGACTG-AATG--AAATTCTGGTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E215605" ref_strand="-" ref_description="SGN-E215605 [cLEL-15-G17]">
      <seq>cgattgcatttaatcctgaataccagcgcatgtgaataattgctgacagattgttgcaggtttgatctacatgttatgtgtaactgacaatatatctccccatgtatatatgtgtgcattccgtccgggaacatggatgagtttcatatgcaaacacttagttatgaagctgacttatgtatggagagttgtttgatgtatctttatggggtggattttattttagactgaaatgaaaaattctggtgggcaagataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="24028" stop="23173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23728" g_stop="23477" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="257" polyA_stop="270"/>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E215605" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215605" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23728" e_stop="23477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGACA</genome_strand>
        <mrna_strand>CGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCATATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E747510" ref_strand="+" ref_description="SGN-E747510 [GI|30171838]">
      <seq>aacaaaattatttccaaaatatggatggttccgttccgcaaacggatacgatgatgtcggatgtggctgcacctccggctcaacaaccacctccgccgtcacaaccgctggctggaatggataatattccggcgacgttaagccatggtggcaggttcattcaatacaatatttttggtaatatttttgaagttactgctaagtataaacctcctataatgccaattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaatctgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaatattgttgcgatcagagatataattccaccaccacagagagaagcctttaacgatgtttacattgcgtatgagcttatggatactgatctccatcaaattattcgctcgaatcagggtttatctgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagacttaaagcctagcaatcttctcttgaatgccaactgtgatttgaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtatcgtccacctgagctgttgttgaattcatccgactatactgcagcaattgatgtatggtcagtgggttgcatcttcatggagttgatggacagaaaacccctcttccctggcagagatcatgtacaccagctgcgtcttattatggagttgattggcactccttcagaggctgaaatggaatttttaaatgagaatgcaaaacgctatatccgacaacttcctctttaccgtcgacaatcatttactgaaaagttcccgcatgtaaacccagctgctattgatcttgtcgagaaaatgttgacatttgatcccagaaggagaataacagttgaagacgctcttgcacatccttacctaacatcgctccatgatatcagtgacgagcccatttgcatgactccttttagcttcgactttgagcagcatgcgcttacagaggaacagatgaaggagctaatttacagggagtcgattgcatttaatcctgaataccagcgcatgtgaataattgctgacagattgttgcaggtttgatctacatgttatgtgtaactgacaatatatctccccatgtatatatgtgtgcattccgtccgggaacatggatgagtttnttatgcaaacacttagttatgaagctgacttatgtatggagagttgtttgatgtatctttatggggtggattttattttagactgaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="34627" stop="23194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34327" g_stop="34075" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34074" i_stop="33919" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33918" g_stop="33789" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="383" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33788" i_stop="33320" i_length="469">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33319" g_stop="33182" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="521" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33181" i_stop="30941" i_length="2241">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30940" g_stop="30608" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="854" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30607" i_stop="30114" i_length="494">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30113" g_stop="29933" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="1035" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29932" i_stop="23870" i_length="6063">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23869" g_stop="23494" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1036" r_stop="1411" r_length="376" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E747510" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34327" e_stop="34075"/>
          <exon e_start="33918" e_stop="33789"/>
          <exon e_start="33319" e_stop="33182"/>
          <exon e_start="30940" e_stop="30608"/>
          <exon e_start="30113" e_stop="29933"/>
          <exon e_start="23869" e_stop="23494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAGGTATCTATTGTTCACTATCTACCCCTGCCCCCCTTACACTAAAGAAGTGAGTTTCCTAAGTTTTTGTTCTTTTATCTCATTTTTCGTATTTCACCTCTTTGTACTGGCTGTTTTGTGCAAATCCATTTAAAAGAAAAGAGTAACATCAAGTTGTAGATCTGGGAAACTTAATGGAGAAGCCTTAGACAGAGTGTAGTTTTATTTTTGAACCGTTGCTTCTCTACGTCAAGAATTACAACTGATCAACTATGCTTTCTTCTCAGCAAGTGTTATGCACATATGTAGTATGTGATCTTAAGAAGGAAAACAAATTTACCTGCCACTCTCTTTCAGTCTTTCCTATAAGAAGATGAACAATGCATGATTATTTTGTATTATGAATATATAGTTTTTCATAGTAATGGCCCGAATCTCTTTTATTATCTTACATTATGCTCAAATTAATAGATGTGATTAATACTTAAATTTATTATGATGACCGCAACTTCATGCAGTTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAGGTGCGAATTTCCAGACTAGTTTTTCTCATAGCTGCATTAATCAATTCTCTATCTGCATCTTACACTCTTTTCTTGAACTGTACAAATGTTCACTTGTTTTATTGCAAGAGATCAATCAATTATTCTCTCCTTTTTTCTCATCAATGAAGGAAAACAGAATCTATTTCAAGTAAGTATTTTATTGATGTGTAGCAAAAAAAAACAGCATTTAGGAACCGTGGATGAGAAGTACATCTGAAAGAGAATTTTACTATGTATGTAAAAGAGCCAAAAGAATTCAACAATCATGCCTGGCTCTAAAACATAATTCGGACCTTCGTTGAACCAAAATCTAAGCAATGCTATACTCTTTAGCTTAAATTTAATAATGTTTCCCTTCTTGTCTTCAAAAACTCTAGCATTCCTCTCTCGCAATACGACCCACCAAACGACAGCAGAATTGTGAGTCCCTGATGTTTTTCGGCATACACCAATTCAAGCCCCAAATGATTTGAAAAGAGATGCTAAATCTGTTGGGTAAACTTGCTTATCAATGGTGAGACATCTTCCTTGGGCTACAATCTAAGATACACACTTGATCTTATATAGAACCAGATTCTTCAATGAAATCTTCCAAGGCCAGGAGACATAGTTGGGAAGGGGTTAGTCAAGTCTGCATAATAGTAGAGAGAATTCCATTTTGGGAGTGTTTCCAGATGACGGAATCTAGCTGAGAGATCAGAGGAGGGACAGGGTTTTGCTGATTCATCATAGCACAAAATTCATCAATTGCCCAATCATTGAGGTTTCTCCTACATGGAATGAGCCATCCTTGATGTGGCTGAAGTTCGGTTGATACAGAGTCTTGGTTGGATTCATATCTAAAACGAAAAGGGAATCTGCTCATGAGAGGGGTGTGGCCAAGCCACGAATGTTGCCAAAATCTAATCTTTCTACCATCACCTACTCTAAAGAACATTGTTCCCAAGTCTAGGTTCGAAGAGCAACATCAAAGAGTTATCACTAAGCATTACGAAGTTGCTATCATTAGAGTTGACGATTAAGCAATATACCCCCATGGCTTGGGAAGGGCCATAAATAAGTACCAACACAAACCAATCTTAGCTTGAAAAGTATGGGAACATTTAACCCCGTTGTTTGCCAAGTTGGTGACTTTAGATCTCTTGAACCTTCACAAAGAATCCAAGAAAGTAAGCTGGGACCCCTTCATTGCAATCGACCTTATCCTTAAGTACTTCCTACATTTGTGTTACCTGTTCAATGTAAACCCATCTTGTTGATTGTTAAATCAAAGGCAAACCCTTTTCTCTATATGCTTTCTTTTATTCCTTCTTCTCTTTGAAACTTAGGAAATTCTCTCTTCATTCCCAACTTGCTTTCCCTTAACAATGTCACATCTAGTGAACTCAACTAGACTTCCCTGAGCAACAAAATCAACTGGTTGCTCCATATAAACTTCATTCTCAAGGTCAGCGCAGAAAAAATCATTCTTGATTTCCAACTGATAATGAGGCCGGCGGAGGACAACAACTATGTATTGATAAAGATGGAAAAATGCTTAGCCACAATAGAGAAAGTATCACTATAATCAAGCCTAAATATCTGAGTATACCCATTGGGACCAAGGCTGGCCTTAACCAATTAACATGGTCACTCGTACCAATTTTGACTGCATAAACCCAACTACAACCAACAATAGATTTATGAAGAAAGGAGAACAAGCTCCCAAGTATCACTTGTGTGTAGAACAAATGTTCTGTCATCCTTGATGAGAAAATGCATCACTCGTAGATTTAGGAATGGAAATAGAAGACAAAGATGATACAAAGGCATAGTGGGGTGATGACTGACTGTGATAACTTCAAAATATATAATGGGGATTAGTATTACCAGCGGATTGTATACCCTTTTGGAGTAAATTGGTTGATTAAGAGGAGATAAGTCTGCAGTAGGCACAGGGTTTGGCATAAGAGGTGAATCATCTGAGCTTGATGCTGGACGTGAATGACGGGAAGTTATGATTGGTGGCTGGAGATGTAGTATGTTAAACTTTGTAAATATTAGGATGATAAAATAAGATGTATATTAAGGTCGAGACTAAATATGTGACCTCGACCGACTTAAGGTACCAACAAAGATTAGGTGAGTAGTAATGATACCTCTTTTGATCTCCACTGTTTATCATTTCCTCCTTCCAAACTCTTTTTTCCCATAACACTAATATCCCCATCACTTCTTCCATTAGCCTCTAAAATGGACTTCTCTCAACCATCTGTTGTTCCAGATTTGTCGGTAGAGATTTGGATTAGTACTTGTTAGCTTAGTTTCAACCAACACATGAATGTCAGCCGGCCCACTGAAGCAACAGATTTCTTACAAGTGTTCTTTTGCTCTCCCCATTTAACCCTCTTAACATTCCAAGATAAAAAAAAATTATCTTCATGATAAACCCTTGTGTGAGATTCTCCCTCTTGTTCTTGGCTCCCCTTCTTTGAATTTCACATCAAAAGCCAAATTCCTAAATTTTAGGAATTACTGCTGTGAGATTATCCTGCTTGTCATTCCTCCTTTTGTTTTGGTCCATCCCCATCCTTTGATCGATCCTTAATAGCAATTCATATGCTATGTCCTCACAACCCGCAAAAGCTGCACCAAATTTTTTCCCTAATTTGATGATATTTGAGTGTATCCACAATGTTGCTTTCTCCTTCACTTCTTCCTCACCGATCGATTCGTGCACTTGTAGTGGCTCTATCTCATTAAAATTTATCATCTACTTTGGGTTACTCTCCTGGGTTCCTTCTTTTTCCCAAGGTTGAATTTCCATGGAGCTACTTCCAACTATGTTCTTTTCACCGTGAAGAATATGGATTTCCATGAAATGCATCTTTCCTCTCTCTGCTTTTCTGTTATGATTCTGATAGACTCCTGTTCATCAGCAAAGATGCGGAAATCCTGATTTTGTCCCGTACTCTTTGGATGAGTATGGATATTATCTATGAAAGGCTCAGCCGTTTTAATTACTGAGGGCTTTGGTGACTTGGGTTTAAAAAAAACTTAATACTTTGTCCTTCAGCTGCCCCTGGCCTGCCTAAGTCTTTGGCCAGAATAATTTAGTCCACTAGTGCTAGGTGTCTCCATTGGCCCAACCTATGTGGACCCTCTCCCACATGTCACCCCCCTGCTTCTATCCTACGTGCCTTCAATCTCCAGCTCCTCAATATCCATTGGATATATTCCAGCCCTCCTTTTCCCTTCAGAGTGCCGAGCTGACTATCTACCTTATTCTGGCTCTTGTCACTCTCATCTCGATGGTCAAGCTTGCGATCATTGACCTTTTGTATCTTGCCAGAGCTTCTACCCAGATCGGTGGAAGAACACTATGTCACCATCTGCGACCTCTACAAAGCATGGAATTTCCTTGAGAGGTCCCTTCGCCTTGGTGTGAGCCCATCTCATATGGTTCTTGAGTAGCATTTCTTCTTCTGCCTCTAACCAACCACCGCACTTGTCCCCTATTTTCTTTATCACGTGTTCTGATCAGAGCTCAAGTGGGATCCCAAGGGCTCTTATCCAGAAAGAGTCACATTTTTATTGGATGGATAAGCCCCTGTTGTTGGAGACCACCACTGGACTTTCAAGCTCATCCGCTGTCTCATCCATCTCCCCCCAGAATGTGTTCAGCGATCTTTCGAGACTGGGTGGTTATGGACCCCTTTCCACGACTGTTCTACCCATTCCTTACATCGTTAAGGGTGGGGATCTCATCATACTCTGGAAATTACGCACTAGGAATCTGCTTAGGAGTTCATTTCTGCCTTTGGATTTGCAGGCATCAAGAGAGTTAACTTCCTGCTGTGTCTCTTGTTACTTTTGGGCCCATATGTTTCTGTGTATTGCTTCTTTATAGTTCTTTTTCTCTTTTGTGTATTAGAATGTATACTCTCGTTGGCATTTAACACGAGCTGTGTATTTGGACCATTTATGATGCCTTCAATTTTGTTGCAAGCCCCAACAAACTCCTTATTACAGCTGTTCTCCGGCAGAATTATTACTGATCTGGATGAACCATTTACTCCAATCATATATATGAATCTACCATATTTATTGAACCTAAAGGAGAAGCGAAAATAGGTAACCAGATCTCTGCCTCTCCATGATTTAAAAGCTTTCCCCCTTGTGTCTGATGCCTCTCGCAGCCTCTTGACTAAACAAGGCTACCTAACTAAGTGTCATCCTTCGCGCGTGGAGCTTTGATTCTCCACCCAGTCGAACCAAGTTCCGTTAGAGGATTTTGTCTGGTTTATATCATATGATTTTACACCCCACCCCCCACCCCCAAGTCTGACATAAATACGGTTCTCCATTAGAGGATGGGTTCTGGTGGTCAAATACCAACTGAAGTATTGTCTGGAAAGTCCTAGAGGGGCTCTAAGAAGCCCTGCCTAGGAACTCATGCTAGGGAGCATTTTTATAATATATTATTTTTTGCATCCTGTGACCTAAGTGATCCTAAATTATGTACAAATATCAGTCAATATTCTGAGATGATAAGAACCCTAGCTCCTTTTTTTACAAAATCAGTAACTAACCTGGAAGCTAAGAGATGAAAATTGAGCTTAATGGGAAAAAACAAGGCGGGGAGAAGGGTTTAGAGGCACAAACCACAGCGGAACCATGGCCCGAAAGGAAGAGACCCAATTTTGATTTTAACAGATGACCCCCTTAAGTTGTTAACCTATTTCTGTTTCTTTTTATTTCTGCTAGATGGAAATATATTTCCATGTGAAGTGCCACATGAACACCCTTTTTTAACATAAAAAGGAGTGTACCACACACCATCAACATTTCATCTAGGTTTGTTTTAATCTATGTTGCTCAGGCTCTTCAAAAATGTAATTTTTGGAGAATCGACATGGGTGCGGCATCAGAAGTGAAGAATCTGTGCAAGTTAGGTTTTAATACATATATAGGATAGTTTAGGTAGGGTATAAGGAACGAGTAGTTGGGGATTGAAATTTGCGAAAAACTGATAGTTCATGTGTTTTTGACGAAAAAACAGCTCGTTGAGCTTCCGAGAATGGGGGATTTTCAGCAGTTGCTCAAACCGGATCTTTCAGTGGCCAACTGTAAGATTTCAACTCAAAATTGAGGCGAACAATCTATTTACTCGATAGAACTCACAATAGAATTCCAGGAAGTTTCAGAGAGGTTTAAACCAATAACAAAATAAGAATAGTGAAGAATGAAGGACGTGCATGGTTTTTCTATTTTGGGATTTTAGATTTTTGAAAATTTTCTGAGATAGAAAATCAAATCCTAGACTGTGTTAATTAAAAAAAACACTAATCTGAGTTCTGAACTGAATGATAACTTTCAAATTCAAGAATACAGAGTTGGAGAAACTATACACAAGTTAAGAAATAATAACTGTCAATTAGATGTGTCTTCCTATCCCTCTAGTATAGCATCGTCACCCTTAATATGTAATATGAGGGTAGAAGTTTGGAAATTAGCTGATTGGAGTTCGGCAGAAGTTAAGAGATGGACTCATTAAAGCATATTTCTAAAATTCTCTCTAAAAGGTTACTTTTAGATTTTGGTGTTTCGAATATACTTATTTGTATCAGTTGTATCATTTGCATCTCCCTGCATCCTAGAAAATTGTTGAGTTTGTCATGAGTTGCAACTTCTCTGTGCAAGGCTGCACTTAACATAGCTAAAGGAAAACTTGATCAAACATATATATGAGTGTAAATGCTAAAGCTTCTTAGGAGAAGTGCTACCGCCACTTCTTTAGTGGATAGTGGATACTGAGTTGATTTCTCAGCCTGTATGAATTGAAATTGTACTTAATATACTGGTATCGCTTTCAAATGATGTGCAAGAGTTTGAATAACACATTTTCCTTAAAAATTCAGTGTTTAGCTCTTTTCATTGGTTAATAGTAATTATTTTCTTTCCATGCTTACAAACTGCTGCAATTAGATGGCCTTCTCTTTAATGCTTATATATCTAATTGGTCCGAATACTAATCCCCTTTCTGTACTCTCCTCTTTTCAGTTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATG</genome_strand>
        <mrna_strand>AACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTNTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E304663" ref_strand="+" ref_description="SGN-E304663 [cLEX-11-K1]">
      <seq>tgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagacttaaagcctagcaatcttctcttgaatgccaactgtgatttgaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtatcgtccacctgagctgttgttgaattcatccgactatactgcagcaattgatgtatggtcagtgggttgcatcttcatggagttgatggacagaaaacccctcttccctggcagagatcatgtacaccagctgcgtcttattatggagttgattggcactccttcagaggctgaaatggaatttttaaatgagaatgcaaaacgctatatccgacaacttcctctttaccgtcgacaatcatttactgaaaagttcccgcatgtaaacccagctgctattgatcttgtcgagaaaatgttgacatttgatcccagaaggagaataacagttgaagacgctcttgcacatccttacctaacatcgctccatgatatcagtgacgagcccatttgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="31245" stop="23502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30940" g_stop="30608" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="349" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30607" i_stop="30114" i_length="494">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30113" g_stop="29933" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="530" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29932" i_stop="23870" i_length="6063">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23869" g_stop="23802" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="598" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E304663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30940" e_stop="30608"/>
          <exon e_start="30113" e_stop="29933"/>
          <exon e_start="23869" e_stop="23802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAGGTATCTATTGTTCACTATCTACCCCTGCCCCCCTTACACTAAAGAAGTGAGTTTCCTAAGTTTTTGTTCTTTTATCTCATTTTTCGTATTTCACCTCTTTGTACTGGCTGTTTTGTGCAAATCCATTTAAAAGAAAAGAGTAACATCAAGTTGTAGATCTGGGAAACTTAATGGAGAAGCCTTAGACAGAGTGTAGTTTTATTTTTGAACCGTTGCTTCTCTACGTCAAGAATTACAACTGATCAACTATGCTTTCTTCTCAGCAAGTGTTATGCACATATGTAGTATGTGATCTTAAGAAGGAAAACAAATTTACCTGCCACTCTCTTTCAGTCTTTCCTATAAGAAGATGAACAATGCATGATTATTTTGTATTATGAATATATAGTTTTTCATAGTAATGGCCCGAATCTCTTTTATTATCTTACATTATGCTCAAATTAATAGATGTGATTAATACTTAAATTTATTATGATGACCGCAACTTCATGCAGTTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAGGTGCGAATTTCCAGACTAGTTTTTCTCATAGCTGCATTAATCAATTCTCTATCTGCATCTTACACTCTTTTCTTGAACTGTACAAATGTTCACTTGTTTTATTGCAAGAGATCAATCAATTATTCTCTCCTTTTTTCTCATCAATGAAGGAAAACAGAATCTATTTCAAGTAAGTATTTTATTGATGTGTAGCAAAAAAAAACAGCATTTAGGAACCGTGGATGAGAAGTACATCTGAAAGAGAATTTTACTATGTATGTAAAAGAGCCAAAAGAATTCAACAATCATGCCTGGCTCTAAAACATAATTCGGACCTTCGTTGAACCAAAATCTAAGCAATGCTATACTCTTTAGCTTAAATTTAATAATGTTTCCCTTCTTGTCTTCAAAAACTCTAGCATTCCTCTCTCGCAATACGACCCACCAAACGACAGCAGAATTGTGAGTCCCTGATGTTTTTCGGCATACACCAATTCAAGCCCCAAATGATTTGAAAAGAGATGCTAAATCTGTTGGGTAAACTTGCTTATCAATGGTGAGACATCTTCCTTGGGCTACAATCTAAGATACACACTTGATCTTATATAGAACCAGATTCTTCAATGAAATCTTCCAAGGCCAGGAGACATAGTTGGGAAGGGGTTAGTCAAGTCTGCATAATAGTAGAGAGAATTCCATTTTGGGAGTGTTTCCAGATGACGGAATCTAGCTGAGAGATCAGAGGAGGGACAGGGTTTTGCTGATTCATCATAGCACAAAATTCATCAATTGCCCAATCATTGAGGTTTCTCCTACATGGAATGAGCCATCCTTGATGTGGCTGAAGTTCGGTTGATACAGAGTCTTGGTTGGATTCATATCTAAAACGAAAAGGGAATCTGCTCATGAGAGGGGTGTGGCCAAGCCACGAATGTTGCCAAAATCTAATCTTTCTACCATCACCTACTCTAAAGAACATTGTTCCCAAGTCTAGGTTCGAAGAGCAACATCAAAGAGTTATCACTAAGCATTACGAAGTTGCTATCATTAGAGTTGACGATTAAGCAATATACCCCCATGGCTTGGGAAGGGCCATAAATAAGTACCAACACAAACCAATCTTAGCTTGAAAAGTATGGGAACATTTAACCCCGTTGTTTGCCAAGTTGGTGACTTTAGATCTCTTGAACCTTCACAAAGAATCCAAGAAAGTAAGCTGGGACCCCTTCATTGCAATCGACCTTATCCTTAAGTACTTCCTACATTTGTGTTACCTGTTCAATGTAAACCCATCTTGTTGATTGTTAAATCAAAGGCAAACCCTTTTCTCTATATGCTTTCTTTTATTCCTTCTTCTCTTTGAAACTTAGGAAATTCTCTCTTCATTCCCAACTTGCTTTCCCTTAACAATGTCACATCTAGTGAACTCAACTAGACTTCCCTGAGCAACAAAATCAACTGGTTGCTCCATATAAACTTCATTCTCAAGGTCAGCGCAGAAAAAATCATTCTTGATTTCCAACTGATAATGAGGCCGGCGGAGGACAACAACTATGTATTGATAAAGATGGAAAAATGCTTAGCCACAATAGAGAAAGTATCACTATAATCAAGCCTAAATATCTGAGTATACCCATTGGGACCAAGGCTGGCCTTAACCAATTAACATGGTCACTCGTACCAATTTTGACTGCATAAACCCAACTACAACCAACAATAGATTTATGAAGAAAGGAGAACAAGCTCCCAAGTATCACTTGTGTGTAGAACAAATGTTCTGTCATCCTTGATGAGAAAATGCATCACTCGTAGATTTAGGAATGGAAATAGAAGACAAAGATGATACAAAGGCATAGTGGGGTGATGACTGACTGTGATAACTTCAAAATATATAATGGGGATTAGTATTACCAGCGGATTGTATACCCTTTTGGAGTAAATTGGTTGATTAAGAGGAGATAAGTCTGCAGTAGGCACAGGGTTTGGCATAAGAGGTGAATCATCTGAGCTTGATGCTGGACGTGAATGACGGGAAGTTATGATTGGTGGCTGGAGATGTAGTATGTTAAACTTTGTAAATATTAGGATGATAAAATAAGATGTATATTAAGGTCGAGACTAAATATGTGACCTCGACCGACTTAAGGTACCAACAAAGATTAGGTGAGTAGTAATGATACCTCTTTTGATCTCCACTGTTTATCATTTCCTCCTTCCAAACTCTTTTTTCCCATAACACTAATATCCCCATCACTTCTTCCATTAGCCTCTAAAATGGACTTCTCTCAACCATCTGTTGTTCCAGATTTGTCGGTAGAGATTTGGATTAGTACTTGTTAGCTTAGTTTCAACCAACACATGAATGTCAGCCGGCCCACTGAAGCAACAGATTTCTTACAAGTGTTCTTTTGCTCTCCCCATTTAACCCTCTTAACATTCCAAGATAAAAAAAAATTATCTTCATGATAAACCCTTGTGTGAGATTCTCCCTCTTGTTCTTGGCTCCCCTTCTTTGAATTTCACATCAAAAGCCAAATTCCTAAATTTTAGGAATTACTGCTGTGAGATTATCCTGCTTGTCATTCCTCCTTTTGTTTTGGTCCATCCCCATCCTTTGATCGATCCTTAATAGCAATTCATATGCTATGTCCTCACAACCCGCAAAAGCTGCACCAAATTTTTTCCCTAATTTGATGATATTTGAGTGTATCCACAATGTTGCTTTCTCCTTCACTTCTTCCTCACCGATCGATTCGTGCACTTGTAGTGGCTCTATCTCATTAAAATTTATCATCTACTTTGGGTTACTCTCCTGGGTTCCTTCTTTTTCCCAAGGTTGAATTTCCATGGAGCTACTTCCAACTATGTTCTTTTCACCGTGAAGAATATGGATTTCCATGAAATGCATCTTTCCTCTCTCTGCTTTTCTGTTATGATTCTGATAGACTCCTGTTCATCAGCAAAGATGCGGAAATCCTGATTTTGTCCCGTACTCTTTGGATGAGTATGGATATTATCTATGAAAGGCTCAGCCGTTTTAATTACTGAGGGCTTTGGTGACTTGGGTTTAAAAAAAACTTAATACTTTGTCCTTCAGCTGCCCCTGGCCTGCCTAAGTCTTTGGCCAGAATAATTTAGTCCACTAGTGCTAGGTGTCTCCATTGGCCCAACCTATGTGGACCCTCTCCCACATGTCACCCCCCTGCTTCTATCCTACGTGCCTTCAATCTCCAGCTCCTCAATATCCATTGGATATATTCCAGCCCTCCTTTTCCCTTCAGAGTGCCGAGCTGACTATCTACCTTATTCTGGCTCTTGTCACTCTCATCTCGATGGTCAAGCTTGCGATCATTGACCTTTTGTATCTTGCCAGAGCTTCTACCCAGATCGGTGGAAGAACACTATGTCACCATCTGCGACCTCTACAAAGCATGGAATTTCCTTGAGAGGTCCCTTCGCCTTGGTGTGAGCCCATCTCATATGGTTCTTGAGTAGCATTTCTTCTTCTGCCTCTAACCAACCACCGCACTTGTCCCCTATTTTCTTTATCACGTGTTCTGATCAGAGCTCAAGTGGGATCCCAAGGGCTCTTATCCAGAAAGAGTCACATTTTTATTGGATGGATAAGCCCCTGTTGTTGGAGACCACCACTGGACTTTCAAGCTCATCCGCTGTCTCATCCATCTCCCCCCAGAATGTGTTCAGCGATCTTTCGAGACTGGGTGGTTATGGACCCCTTTCCACGACTGTTCTACCCATTCCTTACATCGTTAAGGGTGGGGATCTCATCATACTCTGGAAATTACGCACTAGGAATCTGCTTAGGAGTTCATTTCTGCCTTTGGATTTGCAGGCATCAAGAGAGTTAACTTCCTGCTGTGTCTCTTGTTACTTTTGGGCCCATATGTTTCTGTGTATTGCTTCTTTATAGTTCTTTTTCTCTTTTGTGTATTAGAATGTATACTCTCGTTGGCATTTAACACGAGCTGTGTATTTGGACCATTTATGATGCCTTCAATTTTGTTGCAAGCCCCAACAAACTCCTTATTACAGCTGTTCTCCGGCAGAATTATTACTGATCTGGATGAACCATTTACTCCAATCATATATATGAATCTACCATATTTATTGAACCTAAAGGAGAAGCGAAAATAGGTAACCAGATCTCTGCCTCTCCATGATTTAAAAGCTTTCCCCCTTGTGTCTGATGCCTCTCGCAGCCTCTTGACTAAACAAGGCTACCTAACTAAGTGTCATCCTTCGCGCGTGGAGCTTTGATTCTCCACCCAGTCGAACCAAGTTCCGTTAGAGGATTTTGTCTGGTTTATATCATATGATTTTACACCCCACCCCCCACCCCCAAGTCTGACATAAATACGGTTCTCCATTAGAGGATGGGTTCTGGTGGTCAAATACCAACTGAAGTATTGTCTGGAAAGTCCTAGAGGGGCTCTAAGAAGCCCTGCCTAGGAACTCATGCTAGGGAGCATTTTTATAATATATTATTTTTTGCATCCTGTGACCTAAGTGATCCTAAATTATGTACAAATATCAGTCAATATTCTGAGATGATAAGAACCCTAGCTCCTTTTTTTACAAAATCAGTAACTAACCTGGAAGCTAAGAGATGAAAATTGAGCTTAATGGGAAAAAACAAGGCGGGGAGAAGGGTTTAGAGGCACAAACCACAGCGGAACCATGGCCCGAAAGGAAGAGACCCAATTTTGATTTTAACAGATGACCCCCTTAAGTTGTTAACCTATTTCTGTTTCTTTTTATTTCTGCTAGATGGAAATATATTTCCATGTGAAGTGCCACATGAACACCCTTTTTTAACATAAAAAGGAGTGTACCACACACCATCAACATTTCATCTAGGTTTGTTTTAATCTATGTTGCTCAGGCTCTTCAAAAATGTAATTTTTGGAGAATCGACATGGGTGCGGCATCAGAAGTGAAGAATCTGTGCAAGTTAGGTTTTAATACATATATAGGATAGTTTAGGTAGGGTATAAGGAACGAGTAGTTGGGGATTGAAATTTGCGAAAAACTGATAGTTCATGTGTTTTTGACGAAAAAACAGCTCGTTGAGCTTCCGAGAATGGGGGATTTTCAGCAGTTGCTCAAACCGGATCTTTCAGTGGCCAACTGTAAGATTTCAACTCAAAATTGAGGCGAACAATCTATTTACTCGATAGAACTCACAATAGAATTCCAGGAAGTTTCAGAGAGGTTTAAACCAATAACAAAATAAGAATAGTGAAGAATGAAGGACGTGCATGGTTTTTCTATTTTGGGATTTTAGATTTTTGAAAATTTTCTGAGATAGAAAATCAAATCCTAGACTGTGTTAATTAAAAAAAACACTAATCTGAGTTCTGAACTGAATGATAACTTTCAAATTCAAGAATACAGAGTTGGAGAAACTATACACAAGTTAAGAAATAATAACTGTCAATTAGATGTGTCTTCCTATCCCTCTAGTATAGCATCGTCACCCTTAATATGTAATATGAGGGTAGAAGTTTGGAAATTAGCTGATTGGAGTTCGGCAGAAGTTAAGAGATGGACTCATTAAAGCATATTTCTAAAATTCTCTCTAAAAGGTTACTTTTAGATTTTGGTGTTTCGAATATACTTATTTGTATCAGTTGTATCATTTGCATCTCCCTGCATCCTAGAAAATTGTTGAGTTTGTCATGAGTTGCAACTTCTCTGTGCAAGGCTGCACTTAACATAGCTAAAGGAAAACTTGATCAAACATATATATGAGTGTAAATGCTAAAGCTTCTTAGGAGAAGTGCTACCGCCACTTCTTTAGTGGATAGTGGATACTGAGTTGATTTCTCAGCCTGTATGAATTGAAATTGTACTTAATATACTGGTATCGCTTTCAAATGATGTGCAAGAGTTTGAATAACACATTTTCCTTAAAAATTCAGTGTTTAGCTCTTTTCATTGGTTAATAGTAATTATTTTCTTTCCATGCTTACAAACTGCTGCAATTAGATGGCCTTCTCTTTAATGCTTATATATCTAATTGGTCCGAATACTAATCCCCTTTCTGTACTCTCCTCTTTTCAGTTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATG</genome_strand>
        <mrna_strand>TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E329971" ref_strand="+" ref_description="SGN-E329971 [cTOD-5-F17]">
      <seq>aagcttcttcgacatatggatcatgaaaatattgttgcgattagagatataattccaccacctcaacgagaagcatttaatgatgtctatattgcatatgagcttatggacactgatctccatcaaattattcgctctaatcagggattatcagaagaacattgccagtatttcttgtatcagatcctccgtggattgaaatacatacattctgcaaatgtgttgcatagggacttgaagcctagcaatctcctcttgaatgccaattgtgatttaaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtaccgacctccagagctgttgttaaattcttctgactatactgcagctattgatgtttggtcagttggttgcattttcatggaactgatggacagaaagcctctgtttcctggtagagatcatgtacaccagctacgtctgcttatggagttgattggcaccccgtctgaggctgaaatggagtttttgaatgagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="34118" stop="30304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33818" g_stop="33789" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33788" i_stop="33320" i_length="469">
            <donor d_prob="0.919" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33319" g_stop="33182" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="168" r_length="138" r_score="0.884"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33181" i_stop="30941" i_length="2241">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30940" g_stop="30608" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="501" r_length="333" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E329971" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33818" e_stop="33789"/>
          <exon e_start="33319" e_stop="33182"/>
          <exon e_start="30940" e_stop="30608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG</genome_strand>
        <mrna_strand>AAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATTAGAGATATAATTCCACCACCTCAACGAGAAGCATTTAATGATGTCTATATTGCATATGAGCTTATGGACACTGATCTCCATCAAATTATTCGCTCTAATCAGGGATTATCAGAAGAACATTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGATTGAAATACATACATTCTGCAAATGTGTTGCATAGGGACTTGAAGCCTAGCAATCTCCTCTTGAATGCCAATTGTGATTTAAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTACCGACCTCCAGAGCTGTTGTTAAATTCTTCTGACTATACTGCAGCTATTGATGTTTGGTCAGTTGGTTGCATTTTCATGGAACTGATGGACAGAAAGCCTCTGTTTCCTGGTAGAGATCATGTACACCAGCTACGTCTGCTTATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E288241" ref_strand="+" ref_description="SGN-E288241 [cLES-16-G15]">
      <seq>gaagttactgctaagtataaacctcctataatgccaattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaatctgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaatattgttgcgatcagagatataattccaccaccacagagagaagcctttaacgatgtttacattgcgtatgagcttatggatactgatctccatcaaattattcgctcgaatcagggtttatctgaggagcactgccagtatttcttgtatcagatcctccgtgggttgaaatacatacattctgcaaatgttttgcacagagacttaaagcctagcaatcttctcttgaatgccaactgtgatttgaagatatgtgattttgggctagctcgtgtcacttctgaaactgactttatgaccgaatatgttgtgacaagatggtatcgtccacctgagctgttgttgaattcatccgactatactgcagcaattgatgtatggtcagtgggttgcatcttcatggagttgatggacagaaaacccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="34439" stop="30354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34139" g_stop="34075" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34074" i_stop="33919" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33918" g_stop="33789" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="195" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33788" i_stop="33320" i_length="469">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33319" g_stop="33182" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="333" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33181" i_stop="30941" i_length="2241">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30940" g_stop="30654" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="620" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E288241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34139" e_stop="34075"/>
          <exon e_start="33918" e_stop="33789"/>
          <exon e_start="33319" e_stop="33182"/>
          <exon e_start="30940" e_stop="30654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAGGTTAGAATCAGAACATTTAATTCTTCAAACAACAATTTAAAAACACAACTAAAGTGTGAGTACCCGATGTGTTTCTCAAAGCTTGTTTCTTTTTTTTTCCGCTTCCTTTTTCTGGTTAAAAAATGAATATAGGAAAAAAAATCTCATGTTTCACGACATATTCATCATTTTTAGTTGTTTAAACCACATAACTTGTTTGGAAGAATTCTTCTGACTGGCCTGCAACTAATTTCATGTGTGAACTAGTGCAGGTTGACAATTTAAATGATTTAATTTTTGTCAGAACAACGTGTGGCCAGAAAATTGGTTTCTAAGTTTTAAGAATAGGAAATGAAAATTTCTTACTGAGAAGTGGAAATGTTCTATTTTGTACACGTTGTACTTTTGTATGCTAAGAAATATGTGATAGCATTTACCTTCTTTCCTCTTATGGAATCTTATTCGGCTTCTTTTCTCACCAAATAATGCTCATGGAAGGACAAAACTTAAAGTAGCTTACAGTTGGCTTGAGATTACTTTTAGATTGAGAATTCTGACTAGCCTGAGATGTTATGCACTTCCGAAGAGAAATATAATTTTTTTTCGTAAAATTTACTTTGTGGGTAGCAGGGTAGGTCTGCCTCAGTGGAATAAAGTTATTGTCAACTTACTGAAAAGTAACAAATAATTAGGTACTGTTCCATGGATTGTTCATTTATGTTGACAAGCTCATGGTGAACGATTATAATGTTGGTATATTAACTTTATAAGATCTTCCAAAGTTACCTTAGAGATTAAGAATTGCATATACAATTGTAAGTTACATACTCATATTATGTTCTTATAGAACATACAAGTGTAAGTTACATACTCATATTATGTTCTTTACATGCAACAAAGAACTCTCAACCTCTAAAATAACCGAACTTCGTTAGATTTATTGAACTTTAAGATGTAACATTAAATTCCTAGGAGAAGAGCCAGAGGAATTCAGGAAATTACCCACAATGGTCCATGATAAAATTTCAAGAGAAGTAGATTTTACCATAAGAATGTTAACGCTAACAACAACAGCATACCAGCATAATCCACAAGTGGGGGACTAAGGAGGGAGGGTGTACGTAGACCTTACCCCCCGACCTTGTGGGGTAGAGAAGCAATTCCAATAGACCCTTAGCTTAAGAAAATCATTTTATAGAACAAATTTGAAAGGAGTGCCAAAGTAGAATGTTATGATGAACAGTGAAGAAAGATAAGTATTGACAATAGATATAGTAGAATAACCTAAGTAAAGAAACAACAATAGTAATAAATTTGATGAATAAGATAATGCTAGCATAATAATAATATTAGCAATATTGGTTATGGAATAGAAAGGTGCTCCATAATACCATTCAGAAGGGGAGAACACTTGACTACCTACTAATCATTTGCCCTAATCCTCTACCTTCATGCTCTCCTATTTATCGTCATGCGTGTTGTGCTCTGTCAAAGGACCTCTCTCCTATTCTTCCTCAGGTTACCTCTACTGAAAACCTTTAGACTCTAGGGTCTGTCTCCATGCATCTTGTCTATCTTAACTCTGCTGCATGTCTCATCGATCAATACAACTACTGAAAGAGTTTTAATTTGAATAGATTAAAGAATGGAACTTGTTGCGATTGTGAGACTGCATGTTGCATTGCATCAAATCCAATGTTTTAGAAGAGGACCAAACACATAGAGACTAACTGTCATTTTGTCAGAAAGAAGAAAGAAGGTACTCTACGAAGACATGTTAATATAACTATTTAAACCCAATAGCTTGAGGGAATAATTGAGTTGAGTTCTCTCGTATTTTCTCTTTTACTTCACAACTTCAATATAGAAGAACAAAAAACATGAACAAACACCATGAATATGTCTATACAACTTGTATAAAAAGTTTCTTCATCAAAAGAAAAAAAACTTGTATAAAAGGTTATTTGGTTCAGGTTTTAAAAAAAATGCAAAACCAAAAAAATATTGTCAGTTTATTATAATTGGAAACCAAAACAAACCAACTATAATAATGTCTGTTTGGTTTGATTTTCGATTTGATTTGATTTTTTGTTTTTCATGAACACCCGTAATAGTAATAGTGCATATTGTGCTACTTAGATTATAATGCATTTCCGCACCCCATTTGTGGATTACACTGGGTGTATTGCCGTTGAGTTTATAATGCATTATCGTGTCTAAATTTGTCTGACTAAAACTAAATACTTCTCCATTTGGGTGCAGTATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCT</genome_strand>
        <mrna_strand>GAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E397095" ref_strand="+" ref_description="SGN-E397095 [TUS-44-L6]">
      <seq>tgaagttactgctaattataaacctcctataatgccaattggtaaaggtgcttatggaatcgtttgttctgctttgaattcggagacaaatgaatctgtagcaattaagaaaattgctaatgcttttgataacaagattgatgctaagaggactttgagagagatcaagcttcttcgacatatggatcatgaaaatattgttgcgatcagagatataattccaccaccacagagagaagcctttaacgatgtttacattgcgtatgagcttatggatactgatctccatcaaattattcgctcgaatctttttttttctgaggagcactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="34440" stop="32908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34140" g_stop="34075" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34074" i_stop="33919" i_length="156">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33918" g_stop="33789" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="196" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33788" i_stop="33320" i_length="469">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33319" g_stop="33185" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="331" r_length="135" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E397095" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34140" e_stop="34075"/>
          <exon e_start="33918" e_stop="33789"/>
          <exon e_start="33319" e_stop="33185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTGGTGAGTTTTCTTTTTTCTTTCTTTTGATTACTTTCTATCAATTTTAAAAACTACGCTATTTCTCAATTTACTACTTGTAACGTATTTTTTGGGGTTTTTTTTTGTGTGTTGATTAATGATTTTGACTTTTTTTTTTATTTGATTGATTGTGTGTAGTTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAATGTTAGTGAGTTACCTGAGTATGTTTAACTGTGTTAGTTTATTTTCGTATGAATCTGGATAGTAGAAAGAGTAGGTTTTGGGTGTAATCACATGCTCGAATTCAGTTAGTTCAAATTAACTTAATTAATAAGAACAGAATATTACATTTGACTTTTTGCTGAGAGAAGGGCTTAGATGATTTTGTTTTCGTTTCTGCAAATGGTAAGACAGATAGTGTTTTTTTTTTTGTTTAATGTCATGGTACAGAACATGTTTAATGGCGTTCATGCATATAAGTATGGAATTGTTTTCGTTTATTATATAGAGGACAAATTGTATTTTGTCTCTCGGATTGTACCGTCTGTTGGATATAGATGTTTTCAAGATATTTGTGGCTTCTTCTTGAGGATATTTGAGGAGGCTATTGAGAAAAGGAAAATGAGTCTGTATAGGCTTTTGTTGTTGGCTAATGTGACATCTGTCAATGCAGATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGC</genome_strand>
        <mrna_strand>TGAAGTTACTGCTAATTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTG............................................................................................................................................................TTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCTTTTTTTTTCTGAGGAGCACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="39863" stop="41175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40163" g_stop="40875" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40163" e_stop="40875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTATTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCAAATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTG-CTCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="39863" stop="41058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40163" g_stop="40758" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40163" e_stop="40758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTATTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCAAATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="39863" stop="40988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40163" g_stop="40688" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40163" e_stop="40688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTATTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="39934" stop="41213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40234" g_stop="40913" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40234" e_stop="40913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTATTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCAAATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTG</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="39934" stop="40892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40234" g_stop="40592" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40234" e_stop="40592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTATTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="40383" stop="41641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40683" g_stop="41341" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40683" e_stop="41341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCAAATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGAACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="40452" stop="41813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40752" g_stop="41513" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40752" e_stop="41513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGAACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="40452" stop="41712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40752" g_stop="41412" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40752" e_stop="41412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGAACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E355026" ref_strand="+" ref_description="SGN-E355026 [cTOS-19-F16]">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="40679" stop="41821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40979" g_stop="41521" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E355026" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40979" e_stop="41521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAAAAACTCGCGAACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="40855" stop="41785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41155" g_stop="41485" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41155" e_stop="41485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="41062" stop="42220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41362" g_stop="41920" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41362" e_stop="41920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="41066" stop="42429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41366" g_stop="42129" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41366" e_stop="42129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCCTGGAAGGATTTTGCCGTTGCCGCTATCTGTAGGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTG-GGGACTGAAACATAATTGGGTGGCATATTTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="41146" stop="42535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41446" g_stop="42235" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41446" e_stop="42235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCCTGGAAGGATTTTGCCGTTGCCGCTATCTGTAGGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTGGGGACTGAAACATAATTGGGTGGCATATTTGGATAGTGCGTGAAACCTAGCCTCGTAAGAATTTACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="41148" stop="42281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41448" g_stop="41981" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41448" e_stop="41981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="41222" stop="42519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41522" g_stop="42219" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41522" e_stop="42219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCCTGGAAGGATTTTGCCGTTGCCGCTATCTGTAGGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTGGGGACTGAAACATAATTGGGTGGCATATTTGGATAGTGCGTGAAACCTAGCCTCGTAAGAATTTACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="41783" stop="43102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42083" g_stop="42802" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42083" e_stop="42802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATTCGCTCTTGGGGACTGAAACATAATTGGGTGGCATATTTGGATAGTGCGTGAAACCTAGCCTCGTAAGAATTTACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTTGACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTTAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCTTGAGGTACTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAATTTCCCCAT-CCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="41786" stop="43049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42086" g_stop="42749" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42086" e_stop="42749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGCTCTTGGGGACTGAAACATAATTGGGTGGCATATTTGGATAGTGCGTGAAACCTAGCCTCGTAAGAATTTACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTTGACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTTAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCTTGAGGTACTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCA-ATCCCTCATTCTGCACTTGTTCAATTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="43106" stop="41953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42806" g_stop="42253" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42806" e_stop="42253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAATTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGTACCTCAAGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTAAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACAAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E245958" ref_strand="+" ref_description="SGN-E245958 [cLEF-51-E16]">
      <seq>caggctccggaggtacaatatgcggctactatggctccccgcatggatgttccattggaaataggcacgtttccaagtctgactactgggcctataatgacaaatgatcagcatatattttcagtaagttcttgaaattgaaacctccagtcttcaaaggtgcggaatcggaggatgcttacgattttctggtggactgtcatgagctactacacaagaagggtatagtagaacggtttggtgttgagttcgtgagttatcagtttcaagggaacgccaaaatgtggtggcggtcacatattgagtgtcaaccaacagaagcaccacctatgacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="42901" stop="41963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42601" g_stop="42263" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E245958" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42601" e_stop="42263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTAAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACAAACAGAGGCACCACCTATGACTTGG</genome_strand>
        <mrna_strand>CAGGCTCCGGAGGTACAATATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCAAGTCTGACTACTGGGCCTATAATGACAAATGATCAGCAT-ATATTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAAGGTGCGGAATCGGAGGATGCTTACGATTTTCTGGTGGACTGTCATGAGCTACTACACAAGAAGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACCAACAGAAGCACCACCTATGACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="42141" stop="43174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42441" g_stop="42873" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42441" e_stop="42873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCTTGAGGTACTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAATTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGTTTGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGTCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2]">
      <seq>ccacagccccagtggctggctcagtcgcaccctgtcccgccggtgctggtgttgatgctggcgtagtcgttgctctagttctaaccatctgcgaaatagagtgaagatggtcagataccaatttgtatcacctagataccaattggacccaagtaatagcacgaaagaagaaagaatggaattttccaaaagtcttatagcctctcaaggaaaagtaaaggcatccccctaccgttccttaagactctactagactcgttcttgtgtgatgagaccaacgaacctaatgctctgataccaagtttgtcacgaccaaaaccgggttgcgactggcacccacacttaccctcctatgtgagcgaaccaaccaatctaaccttaacatttcaatataatatcaacagaaagtaatgtggaagacttaaactcattaaatacagaccaattcattaacttctaaaattcaacatctattattccccaaaatctggaagtcatcaccacaagaacatctacgatcaaatgactaaactaagagtagtctaaaagctaaaaatacataagaagctagtccatgccggaagttcaaggcatcaagacttgaagaagaagatccagtccaagctagaagcattagctcaccctgaatttccgatgtagtaagactggcttgaattactgttgagttgaacacgatggcacgtttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="42580" stop="48928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42880" g_stop="42929" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42930" i_stop="47962" i_length="5033">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47963" g_stop="48628" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="710" r_length="660" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42880" e_stop="42929"/>
          <exon e_start="47963" e_stop="48628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAGCCCCAGTGGCTGGATCAGTTGTTTCTTGTCTGGCCAGTGTTGGTGTTGGCGTAGTCGTTGCTCTAGTTCTAACCATCTGCAAAAGAGAGTGAAGATGGTCAGATACCAATTCGTATCGCCTAGATACCAATTGGACTCAAGTAGTAGCACGAAAGAAAGAACGAAAGAGTGAAATTTTCCTAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAATACTCTACTAGACCTGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCCGGGCCGCGATTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAAGGTAATATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATAACATCAATTCATTAACTTCTAAAATTCAACATCTATTATTCCCCAAAATCTGGAAGCCATCATCACAAGAACATCAACGATCAAATGACTTAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGATGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGACCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATATCCGATATGACGAAGACTGGCTAGAATCACTGCTGAGTTGAAGATGACGGAACGTTTGCTGCACTCCACAAATAACAAGAAGAAAACATAAAAGTAGGGGTCAGTACAAACCATGGGTACTGAGTAGATATCATCGGTCAACTCAAAATAGAGAACAGTATATATCAAGTAATATCATAAATCAACTATAAAACTCAACATGTAGCAACAACAGGTACTATAATCATCAATAAGTACCATCAAGTTCATATATGAGGGCTCAAGCCTCAATGCCATACTCATTTGGGAATTAAGTTTATTAAGTTGAGTATATTATCATCTTTCAAGATTCATTATCTTTCTTCCTCTTGTTTCGGTACGTGACACTCCGATCCCCTACTGCTATGTGTCGGTACGTGACACTCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTATGTGTTTCGGTACGTGACACTCCGATCCCCTATATGTGTCGGTACGTGACACTCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTATGTGTGTCGGTACGTGACACTCCGATCCCCTATACGTGTCGGTACGTGACACTCCGATCCCCTACATGTGTCGATACGTGACACTCTGATCCCCTAATTCTACGTGTCAGAACGTGACACTCCGATCCACTAATACTATGTGTCGGAATGTGACACTCCGATCCACTAATACTATGTGTCGGAACGTGACACTCCGATCCACTAATATCATTCTGTAAATCTTCAAGCCTTCTCTATACCAAGGCATCATCAATAATAATGTATATTAGAGTTTCTTTTCAAGATTTGGGATTCAATACTTTCATCATGCTTATCTTATCACAATCACATAATCATATTCATGCAAACATAACATTAAGCATATAGTAGGGTTTACAATACTACAAATACATATCATTCACTATTAAGAGTTTACTTAGGAAAGCATGAAACCATAACCTACCTCCACCGAAGATTTGTGATTAAGCAAGAAATTCCCAAGGCTTTTGTTCCTTCTTCTCGTTCGATCCTCTCTCAATTCGTTTCTCTTTCCCTCTCTTTGTTCTTTCTAATTTTCTTTATTCAACCCTCTTTCTTTTACCCTAATTAATATATAATTAAGAATGAAAGATGGTAATAATGACCCACTAATTAAATTAAGGTTACCTATTTTAACCCCCAAGTAATTAGACTTATTAACCTTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGCAAAGAAATCCGACCCAGACTGGGATTTGCGCAACCTGTGACGGTCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGCCGTCGCAAGGGTCAGAGACTCAGTTTCCACTGAATTATCTGTGACGGTCCGTCACGCCTGTGACGGTCTGTCCTGCTATTCCGTTATGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATGACGTTCCATCGTTGGGTTCGTCGCTTCAGTCTGTTTTTCCAGAAATAAAATCTGCTGCTCGAAACGACTAAACAGGTCGTTACAATAGATACCAATTTACCTATCGTTCGTCCCCGAACGATCACAAGAAGGAAAACAAGGGCGAAAAGGAGTACCTGAATCTGTAAACAGATGTGGGTATTTTTCTCGCATATCCGCCTCCTTCTCCCAAGTGGCTTCTTCAACCGGTCGATTCTTCCATTGCACCTTGATGGATGCAATCTCTCTTGACCTCAACTTGCGAACTTCTCTATCTAGAATAGCAACAGGCTCATCCTCATAAGACAAGTTCTCATCAAGCAAAACTGAATTCCAACGGATAATGTAGTTTCCATCCCCATGGTATCTTTTCAACATCGACACATGGAATACCGGATGTACTCCGGACAGCCCTGGAGGCAAGGCTAACTCATAAGACACCTCTCCTACTCGCTTAAGTACTTCAAATGGTCCAATGTACCTTGGACTTAGTTTACCCCTTTTTCCAAACCGCATCACCCTTTCATTGGTGAAACTTTCAATAAGACTTGTTCACCCTCCATGAACTCTAAGTTTCTAACCTTTCGATCTGTATATTCTTTTTGTCTACTTTGCGCCGCTAGAAGCTTTTCTTGAATAGACTTCACTTTCTCTATCGAATCCCTCAAAAGATCAGTGCCCCAAGGTCTAACCTCGAACGCATCAAACCAACCAATGGGAGACCTACATCTCCTACCATACAATGCTTCAAATAGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCGGTCTGAGGATGGAACGCAGTACTAAGGTCCAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTAAAACCCCATGCAATCGCACCACTTCCGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAACCTATCAATAATTACCCAAATAGAATCAAACTTTCCCAATGTCTTGGGAAGACCAACCACAAAGTCCATTGCAATTCTCTCCCACTTCCATTAAGGAATGGGCATTCTCTGAAGTGTTTTTCCGGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGATACATCTTGGTTGCGCCCGGATGTATAAAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAACCACCGACGCGGGGTACACATACCCTTCCCTTGATCCTCAAAACACCTTCCTCATCAATTTGTGCTTCCTTAGCCTCTCCTCGCAATACCTTATCTTGAATTCTGCGCAGTTCCTCATCATCAGACTGTCTTCCCTTAATCTTGTCAAGAAAGGAAGATCTGGCCTCCACAGAAGCCAACAACCCTCCCTTCTCATTTACTTCTAATCTCATCAAGTCATTAGCTAGAGTCTGAACCTCTCTAGCCAGTGGGCGTCTAGAAGCTTGCAAGTGAGCTAGACTTCCTATGCTTCCCGCCTTTCTACTTAAAGCATCCGCTACAACATTTGCCTTCCACGGATGATACAAGATAGTGATATCGTAGTCCTTTAGTAACTCCATCCATCTCCTTTGTCTTAAGTTCAAATCTTTCTGGGTAAAGACATACTGAAGGCTACGATGATCCGTGTAGACCTCACACTTTACCCCATATAGATAGTGTCTCCATTGTTTTAATGCAAACACTACCGCAGCCAATTCCAAGTCGTGGGTCGGATAGTTACGTTCATGCACCTTTAATTGCCTTGAAGCATAAGCAATCACACTCTTCTCTTGCATTAGTACTGCACCCAAACCAGAATAGGATGCATCACAATAAACAATGAAGTTCTTACCCTCTACTGGCAAGGTAAGGATAGGTGCGGTAGTCAACAAAGTCTTGAGCTTCTGAAAGCTTTCCTCACATTCGTCCGACCATACAAATGGAACATTCTGCTTAGTCAAGTTCGTCAGTTGGGAAGCAATAGAAGAGAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGGAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGTTTGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGTTGCTGTTCTTCCTCGAGCCACAGCCCCAGTGGCTGGCTCAGTTGTTTCTTGTCTGGACGGTGTTGGTGTTGGTGTAGTCGTTGCTCTAGTTCTAACCATCTGCAAAAGAGAGTCAAGATGGTCAGATACCAATTCGTATCGCCTAGATACCAATTGGACTCAAGTAGTAGCACGAAAGAAAGAACGAAAGAGTGAAATTTTCCTAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACCTGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCCGGGCCGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAAGGTAATATCAACATAAAGTAATGCGGAAGACTTAAACTCATT-AATA-ACATCAATTCATTAACTTCTAAAATTCAACATCTATTATTCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTTAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGACCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATATCCGATATGACGAAGACTGGCTAGAATCACTGCTGAGTTGAAGATGACGGAACGTTTGCTG</genome_strand>
        <mrna_strand>CCACAGCCCCAGTGGCTGGCTCAGTCGCACCCTGTCCCGCCGGTGCTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGCTGGCGTAGTCGTTGCTCTAGTTCTAACCATCTGCGAAATAGAGTGAAGATGGTCAGATACCAATTTGTATCACCTAGATACCAATTGGACCCAAGTAATAGCAC----GAAAGAA-GAAAGAATGGAATTTTCCAAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGCATCCCCCTACCGTTCCTTAAGACTCTACTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGA-CCAAAACCGGGTTGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCT-AACCTTAACATTTCAATATAATATCAACAGAAAGTAATGTGGAAGACTTAAACTCATTAAATACAGACCAATTCATTAACTTCTAAAATTCAACATCTATTATTCCCCAAAATCTGGAAGTCATCACCACAAGAACATCTACGATCAAATGACTAAACTAAGAGTAGTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATTTCCGATGT-AGTAAGACTGGCTTGAATTACTGTTGAGTTGAACACGATGGCACGTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="43465" stop="42580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43165" g_stop="42880" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43165" e_stop="42880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTATTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCGTTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACTGGCCAGACAAGAAACAACTGATCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="45508" stop="46285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45808" g_stop="45984" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45808" e_stop="45984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATAGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="47060" stop="48018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47360" g_stop="47718" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47360" e_stop="47718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGGAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="48504" stop="47619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48204" g_stop="47919" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48204" e_stop="47919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCGTTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTGACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACTACACCAACACCAACACCGTCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E351546" ref_strand="+" ref_description="SGN-E351546 [cTOS-12-I18]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttggtatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttcgagtcaattggtatctaagcgatacgaattggtatctgaccatnctcactctcttgccagatgggtagaactagagcaacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="49008" stop="47677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48708" g_stop="47977" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E351546" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48708" e_stop="47977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATG-TTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTTCCGTCATCTTCAACTCAGCAGTGATTCTAGCCAGTCTTCGTCATATCGGATATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGGTCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTT-TTAGAATACTCTTAG-TTAAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGATGTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACCTTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCGTTCTTTCTTTCGTGCTACTACTT-GAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTGACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACT</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGGTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAA-ACTCTTAGAATTAGT-AGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTT-GGGAATAATAGATGTTTAATAATAGTAG-T--T--ATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTCGAGT-CAATTGGTATCTAAGCGATACGAATTGGTATCTGACCATNCTCACTCTC-TTGCCAGATGGGTAGAACTAGAGCAACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E356696" ref_strand="+" ref_description="SGN-E356696 [cTOS-21-K7]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacatangagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttgagtccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="49008" stop="42713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48708" g_stop="48052" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E356696" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48708" e_stop="48052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATG-TTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTTCCGTCATCTTCAACTCAGCAGTGATTCTAGCCAGTCTTCGTCATATCGGATATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGGTCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTT-TTAGAATACTCTTAG-TTAAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGATGTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACCTTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCGTTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAA-ACTCTTAGAATTAGT-AGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTT-GGGAATAATAGATGTTTAATAATAGTAG-T--T--ATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATANGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E356206" ref_strand="+" ref_description="SGN-E356206 [cTOS-20-F19]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattagggtcgttggtctcatcacacaagaacaagtctagtagagtcttaagggacggtanggggacgcttttacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="49008" stop="42788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48708" g_stop="48127" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E356206" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48708" e_stop="48127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATG-TTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTTCCGTCATCTTCAACTCAGCAGTGATTCTAGCCAGTCTTCGTCATATCGGATATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGGTCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-A-TTTTTAGCTT-TTAGAATACTCTTAG-TTAAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGATGTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACCTTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGAC-AAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTC</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAA-ACTCTTAGAATTAGT-AGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTT-GGGAATAATAGATGTTTAATAATAGTAG-T--T--ATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGGTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGGACGGTANGGGGACGCTTTTACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E721465" ref_strand="+" ref_description="SGN-E721465 [FC14AA05]">
      <seq>tagggcgattggcggccaatcggccgaattcagaaagctttcttcccctcaatgctgtttatgagatgaagcgcaaacttcgggagttgaagcagacgggaagtattagggcctgtgtgaaattgttatccgctatgaccctccagattccccaactcacggaagatgacatgctgttcaccttcatggacgggctgcagaattgggcgaggaccgagttagagcggcgtcaagtaaaaaccatcgatgaggccatcactcaagctgagaccttgacagatttcaaacatgatcgtttggacaaggcgaagggcaaggaggcaaagggcagtcaagctaaaggtgggggagaccgtggccgaggcagagaaccgtcggcacaacccaagcagcaagacacacccaagtccgatggcagacggttcgaacgccggaagttctcggagaagcggacgcagtccagtagaggagacgggtgctatatatgtggcggaccacacggttacgccaggtgcccagagatgaagagtcttagtgccatcgtccgtgagcggaaggaaaaggaggcacaagacaaggtgaaaccggcagacaccactcaattgggcatggttggaatctgtggtgccatagcaaagcaggctaacaacccgggggatttcagcacacaatatgtggatatctccatcaatgggcaagcagttcgggccatggtagattccggggctgaggctaacatcatgaccaaggcggcggcagagaaattgggactgaaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="91066" stop="89710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90766" g_stop="90010" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="780" r_length="755" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E721465" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90766" e_stop="90010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCAAGAAAGCTTTCTTCCCCAACAATGCTGTTTATGAGATGAAGCGCAAACTCTGGGAGTTGAAGCAGACGGGAAGTATTAGGGCCTATGTGAAAGAGTTCACAATTTTGACCCTCCAGATTCCCCAACTCACGGAGGATGACATGCTGTTCACCTTCATGGACGGGCTGCAGAATTGGGCGAGGACCGAGTTAGAGCGGCGTCAAGTAAAAACCATCGATGAGGCCATCACTCAAGCCGAGACCTTGACAGATTTCAAACATGATCGTTTGGACAAGGCGAAGGGAAAGGAGGCAAAGGGCAGTCAAGCTAAAGGCGGGGGAGACCGTGGCCGAGGCAGAGAACCATCGGCACAACCCAAGCAGCAAGACACACTCAAGTCCGATGACAGACAGTTTGAACACCGGAAATTCTCGGAGAAGCGGACGCAGTCCAGCAGAGGAGACGGGTGCTATATATGTGGCGGACCACACGGTTACGCCAGGTGCCCAGAGATGAAGAGTCTTGATGCCATCGTCCGTGAGCGGAAGGAAAAGGAGGCACAAGACAAGGCGAAACCGGCAGACACCACTCAGTTGGGCATGGTTGGAATCTGTGGTGCCATAGCAAAGCAGGCTGACAACCCGGGGGATTTCAGCACACAATATGTGGATATCTCCATCAATGGGCAAGCAGTTCGGGCCATGGTAGATTCCGGGGCTGAAGCCAACATAATGACCAAGGCGGCGACAGAGAAATTGAGACTGAAAATTG</genome_strand>
        <mrna_strand>GAATTC-AGAAAGCTTTCTTCCCC-TCAATGCTGTTTATGAGATGAAGCGCAAACTTCGGGAGTTGAAGCAGACGGGAAGTATTAGGGCCTGTGTGAAATTGTTATCCGCTATGACCCTCCAGATTCCCCAACTCACGGAAGATGACATGCTGTTCACCTTCATGGACGGGCTGCAGAATTGGGCGAGGACCGAGTTAGAGCGGCGTCAAGTAAAAACCATCGATGAGGCCATCACTCAAGCTGAGACCTTGACAGATTTCAAACATGATCGTTTGGACAAGGCGAAGGGCAAGGAGGCAAAGGGCAGTCAAGCTAAAGGTGGGGGAGACCGTGGCCGAGGCAGAGAACCGTCGGCACAACCCAAGCAGCAAGACACACCCAAGTCCGATGGCAGACGGTTCGAACGCCGGAAGTTCTCGGAGAAGCGGACGCAGTCCAGTAGAGGAGACGGGTGCTATATATGTGGCGGACCACACGGTTACGCCAGGTGCCCAGAGATGAAGAGTCTTAGTGCCATCGTCCGTGAGCGGAAGGAAAAGGAGGCACAAGACAAGGTGAAACCGGCAGACACCACTCAATTGGGCATGGTTGGAATCTGTGGTGCCATAGCAAAGCAGGCTAACAACCCGGGGGATTTCAGCACACAATATGTGGATATCTCCATCAATGGGCAAGCAGTTCGGGCCATGGTAGATTCCGGGGCTGAGGCTAACATCATGACCAAGGCGGCGGCAGAGAAATTGGGACTGAAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E538343" ref_strand="-" ref_description="SGN-E538343 [TUS-57-H16]">
      <seq>agtgatccacttaaaagcaaaactcagattatggataatgttccacctggaatccaaagagatcagtggacttcttatgttaattatcgttataaaaaagaaacacaggaagtgtgcaatagaaatgctgaaagtcgaaagaaacaaatcattccacacacaggtggatccaaagctaactctagaagaagggctgaaatgatggctgagaccggtcaaatgcctggacgagcagaactttatcttgctactcataagaatgaagatggagcatatgtaaatgaagcggcaaaaattatctgtgaaaaaattcagcaaaatctgagtcaaagcactgtggatgagtctataatatcgccagatgatgcagttggaaaaattctaggaaaagagcactctggaagggagaactacaataaattgttgaattctcacattcaaatgatggctgctttcaagtcatatatgataatgaaagaaggggcattaccagaacaatttgtggggttatttgctcctactactacaatgccaggtgatgttagtgatagtaatcgtagtgaaccccgctgaagtttcatgaataattgtagatcctttcttgagtttggttgctagtgatctaaagtttaagcaattttttgtagtgatttgaagttcaagcaagtttttgtagtgattgaaagtttcttgtaataatatggttgaagtgaataacatgttccaattaagtttgtagaagtaatagtacactttatgacatgcttttgtggtgaactattgtgttatttcatatagtaatatgcccttttagatttgtctatgttaattaattagttattattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="110242" stop="107010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109942" g_stop="109835" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109834" i_stop="109752" i_length="83">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109751" g_stop="109659" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="201" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109658" i_stop="109554" i_length="105">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109553" g_stop="109452" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="303" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109451" i_stop="109005" i_length="447">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109004" g_stop="108903" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="405" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108902" i_stop="108795" i_length="108">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108794" g_stop="108669" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="531" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108668" i_stop="107624" i_length="1045">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107623" g_stop="107297" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="856" r_length="325" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E538343" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538343" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="109942" e_stop="109835"/>
          <exon e_start="109751" e_stop="109659"/>
          <exon e_start="109553" e_stop="109452"/>
          <exon e_start="109004" e_stop="108903"/>
          <exon e_start="108794" e_stop="108669"/>
          <exon e_start="107623" e_stop="107297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATCCACCTAAAAGCAAAACTCAGATTATGGATAATGTTCCACCTGGAATTCCAAGAGATCAGTGGACTTATTATGTTAATTATCGTTATAAAAAAGAAACACAGCTATATATTTAATTATTTTAAGTAGTATGTGTAGTCATATAATTAATTTCTAATGATTGAATTTCGTGTATCTTTTTTGTTAGGAAATGTGCAACAGAAATGCTGAAAGTCGAAAGAAACAAATCATTCCACACACAGGTGGATCCAAAGCTAACTCTAGAAGAAGGGCTGAAATGGTCAAAGATTTTAGTTCTTTTCATTTTATTTAGTTATTAAGATGACTTATTTTGTAATTATGTTTAATTAGTTAAGTTATTCTAAGTTGATTGTTTTGCTTATAGATGGCTGAGACCGGTCAAATGCCTGGACGAGCAGAACTTTATCTTGCTACTCATAAGAATGTAGATGGAGCATATATAAATGAAGCAGCAAAAGTTATCTGTGTAAGTTAGTTAATGGGGGAAATAATAGCACTCCAGTTCCTTGGTTGTGTCAAGTCTGTCCCTATTCTATTAACAAGTTAAGTCAAGCAATTTATGTTTAGTCTCTTATTTATTTTAAACCTGAGATTCTCTGTTAATATTTTCGTCATTGCTATTGTTCAAATCAGTTTGATGGTGCCTTGTTTAGTATAGTGTGCTGTCATTTTGAAGTGATTTAAAATCCTTGCTTGAGTAAATGATTTAAAATTATGTCTCACTAATTATCTCTCACTTGGATTGAATATATGCATGTACTTTGCTTGTTTTATGAATGCTAAACTCAGGAGTAAAGGAATTCCTAACTCAGGAATATGTGAATGCACTTTGATTATATTTAGGTAATACATGTTTGTTCTCAATTACTTTTTCAAATTTTGATAAAGTGTTCTGTGTGTGTACTATACTCGGGAAAAAATTCAGCAAACTATGAGTCAAAGCACTGTGGATGAGTCTATAATATCGCCAGATGATGCAGTTGGAAAAATTCTAGGAAAAGAGCACTCTGGAAGGGTAAGGTGTTTGGGATTAGGAGTTGTTCCCACTAGATTTTTTAAACAAGCAAGACCTCGATTCAGCGGTATGAATGCTTCGAGTGTTTCATGTCCATCCAATTGCTAGGAGAACTACAATAAATTGTTGAATTCTCACATTCAAATGATGGCTGCTTTCAAGTCATATATGATAATGAAAGAAGGGGCATTACCAAAACAATTTGTAGGGTTATTTGCTCCTACTACTACAATGGTAAATATAACGTTTACATTCTCTCTTCTTCAATGACGTTATTTATATATCAGATTTGTTCGTTTAGTTTACATCAAATGCTAATTGAAAAACAAATGCTAGTGCATCAAATGCTAATTGAAAAACAATTCTACATTTGCATGGCTACTCCTAGTGCATAATGTGCAGCAAATTGGCCTTTACTGTCCAATATTTGTAAATGGAGATGATTTTCCTTTTGAGCTTCTTGTGCAACATTATGTACTCTTATGGAAATACACAACAACCTAATTTATAGTCCATGAAGAGTTTTCTTCTGGCGTCTAAACGACAAGTTCGTATTTACTTTGCATTGTTCTTGTTGTTGACTTCTTTTCCTTAGCATGCCGAGTAACATCAGGTAAATCATAGGATGTGTGTAACCCTTTGGACTTTCTGCTCCTTCTTGTTGGTGCTTTATGCAATTAGATAGCTATGCTTATGTGTGCACCCAATAGTGTGGTCTACTGGTCGATTGGGGGAGGGGGGAGGAAATCATTGGAAATTAGGGTTCAAATGTCAATAGAGACAAGAAACATTAGGTGATTTCTTCTCATTCCCAAAGTCTTGGTAGGCAGAGGTTAGCAAGTACTCGGTGAAATAGTCAAGTTTGCATAAGTTGATCCAGGTACTGTCAGAAGGCAAGAAAGAAAAAAAATAGCTATTGTACGTATGCATATTTGCACATATGCAGATATGTACTACTATTGTTATTTGTTGAGGTCGAATCCGTTTTAGGATTTGTGATTTTGATATCCTTAAATGCAATCATGCTAGGAGTATTTCCGCATAAACTCATCTGAATTGCTTGGTCTTGTTGTACTTGCAAAGACAATTCATATCTCTAAGCAAATTGGATGATTACATCTCCTATTTGTTAATGAGTGGCATTGGTATTTAGTTTCATAGTAGTGAATTTAGTATTGTTGTTCACATGCTTAGTGTTAGCTTACATTATTTCATATTTTATCGGAGTAAAAGTCTTGAGTTTGGATGAAGTCACTTACATGTGTATTTTCCTTTGCAGCCAGGTGATGTTAGTGATAGTAATCGTAGTGAACCCCGCTGAAGTTTCATGAACAACTGTAGATCCTTTCTTGAGTTTGGATGCTAGTGATCTAAAGTTTAAACAATTTTTTGTAGTGATTTGAAGTTCAAGTAAGTTTTTGTAGTGATTGAAAGTTTCTTGTAATAATATGGTTGAAGTGAATAACATGTTCCAATTAAGTTTGTAGAACTAATAGTACACTTTATGACATGCTTTTGTGGTGAACTATTGTGTTATTTCATATACTAATATGCCCTTTTATATTTGTCTATGTTAATTAATTAGTATTATTATTTAAATTTGAAT</genome_strand>
        <mrna_strand>AGTGATCCACTTAAAAGCAAAACTCAGATTATGGATAATGTTCCACCTGGAATCCAAAGAGATCAGTGGACTTCTTATGTTAATTATCGTTATAAAAAAGAAACACAG...................................................................................GAAGTGTGCAATAGAAATGCTGAAAGTCGAAAGAAACAAATCATTCCACACACAGGTGGATCCAAAGCTAACTCTAGAAGAAGGGCTGAAATG.........................................................................................................ATGGCTGAGACCGGTCAAATGCCTGGACGAGCAGAACTTTATCTTGCTACTCATAAGAATGAAGATGGAGCATATGTAAATGAAGCGGCAAAAATTATCTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAATTCAGCAAAATCTGAGTCAAAGCACTGTGGATGAGTCTATAATATCGCCAGATGATGCAGTTGGAAAAATTCTAGGAAAAGAGCACTCTGGAAGG............................................................................................................GAGAACTACAATAAATTGTTGAATTCTCACATTCAAATGATGGCTGCTTTCAAGTCATATATGATAATGAAAGAAGGGGCATTACCAGAACAATTTGTGGGGTTATTTGCTCCTACTACTACAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGTGATGTTAGTGATAGTAATCGTAGTGAACCCCGCTGAAGTTTCATGAATAATTGTAGATCCTTTCTTGAGTTTGGTTGCTAGTGATCTAAAGTTTAAGCAATTTTTTGTAGTGATTTGAAGTTCAAGCAAGTTTTTGTAGTGATTGAAAGTTTCTTGTAATAATATGGTTGAAGTGAATAACATGTTCCAATTAAGTTTGTAGAAGTAATAGTACACTTTATGACATGCTTTTGTGGTGAACTATTGTGTTATTTCATATAGTAATATGCCCTTTTAGATTTGTCTATGTTAATTAATTAG--TTATTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E389711" ref_strand="+" ref_description="SGN-E389711 [TUS-4-A14]">
      <seq>atttgccatattatgggaaattggaagatattattgagcttaactattatggaaagttcagggttgtgcttttcaaatgcaagtgggctgacgctactcgagatagagggtttaaaagagatgtttggaactttaattgtgtcaatttttctaaattgattcacagcggtgatcgtgaggatgatgatctttatattgaagcatcacaagcaaatatggttttctatgttgatgatgaaacagataaagaatggagtgtagctatacatttacaaccaagagatgtgtttgacatgggacaagttgatgaagaagagatatttgagaatgagccctaccaacaacaagaatttgaaaattttttcgatgttgattatggaaatgtccaaatctcaacagaggagcatatgtctgaacacacatagcatgctttttagttttggtgtaaaggaaaaactatttgtatatgctaatcacatcactcttttattaagatttgaacttttcatgtgtgtgtggatctggatacaaatttcttatgaaaatctgcagtcttataactggatgaaccagtaatctttacaagtattgcaataacagtattttttttaagaatttctgatttatcttatctttggtttattgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="111920" stop="110648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111620" g_stop="110948" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E389711" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111620" e_stop="110948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCCATATTATGGGAAGTTGGAAGATATTATTGAGCTTAACTATTATGGAAATTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACACTACTCGAGATAGAGGCAAGCAGATTTGCCATATTATGGGAAGTTGGAAGAGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACACCGGTGATCGTGAGGATGATGATCCTTACATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATAAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAATTTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACATAGGAGCATATGCCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTATGGATGTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTAAAGAATTTCTGATTTATCTTATCTTTGGTTTATTGTAG</genome_strand>
        <mrna_strand>ATTTGCCATATTATGGGAAATTGGAAGATATTATTGAGCTTAACTATTATGGAAAGTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACGCTACTCGAGATAGA-G---G--G-TTT---A-A--A----A-G-------AGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACAGCGGTGATCGTGAGGATGATGATCTTTATATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATGAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAAATTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACAGAGGAGCATATGTCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTGTGGATCTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTTAAGAATTTCTGATTTATCTTATCTTTGGTTTATTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E550449" ref_strand="+" ref_description="SGN-E550449 [TUS-5-A26]">
      <seq>atttgccatattatgggaaattggaagatattattgagcttaactattatggaaagttcagggttgtgcttttcaaatgcaagtgggctgacgctactcgagatagagggtttaaaagagatgtttggaactttaattgtgtcaatttttctaaattgattcacagcggtgatcgtgaggatgatgatctttatattgaagcatcacaagcaaatatggttttctatgttgatgatgaaacagataaagaatggagtgtagctatacatttacaaccaagagatgtgtttgacatgggacaagttgatgaagaagagatatttgagaatgagccctaccaacaacaagaatttgaaaattttttcgatgttgattatggaaatgtccaaatctcaacagaggagcatatgtctgaacacacatagcatgctttttagttttggtgtaaaggaaaaactatttgtatatgctaatcacatcactcttttattaagatttgaacttttcatgtgtgtgtggatctggatacaaatttcttatgaaaatctgcagtcttataactggatgaaccagtaatctttacaagtattgcaataacagtattttttttaagaatttctgatttatcttatctttggttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="111920" stop="110654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111620" g_stop="110954" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E550449" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111620" e_stop="110954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCCATATTATGGGAAGTTGGAAGATATTATTGAGCTTAACTATTATGGAAATTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACACTACTCGAGATAGAGGCAAGCAGATTTGCCATATTATGGGAAGTTGGAAGAGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACACCGGTGATCGTGAGGATGATGATCCTTACATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATAAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAATTTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACATAGGAGCATATGCCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTATGGATGTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTAAAGAATTTCTGATTTATCTTATCTTTGGTTTA</genome_strand>
        <mrna_strand>ATTTGCCATATTATGGGAAATTGGAAGATATTATTGAGCTTAACTATTATGGAAAGTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACGCTACTCGAGATAGA-G---G--G-TTT---A-A--A----A-G-------AGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACAGCGGTGATCGTGAGGATGATGATCTTTATATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATGAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAAATTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACAGAGGAGCATATGTCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTGTGGATCTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTTAAGAATTTCTGATTTATCTTATCTTTGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E228378" ref_strand="+" ref_description="SGN-E228378 [cLED-3-N17]">
      <seq>tttgccatattatgggaaattggaagatattattgagcttaactattatggaaagttcagggttgtgcttttcaaatgcaagtgggctgacgctactcgagatagagggtttaaaagagatgtttggaactttaattgtgtcaatttttctaaattgattcacagcggtgatcgtgaggatgatgatctttatattgaagcatcacaagcaaatatggttttctatgttgatgatgaaacagataaagaatggagtgtagctatacatttacaaccaagagatgtgtttgacatgggacaagttgatgaagaagagatatttgagaatgagccctaccaacaacaagaatttgaaaattttttcgatgttgattatggaaatgtccaaatctcaacagaggagcatatgtctgaacacacatagcatgctttttagttttggtgtaaaggaaaaactatttgtatatgctaatcacatcactcttttattaagatttgaacttttcatgtgtgtgtggatctggatacaaatttcttatgaaaatctgcagtcttataactggatgaaccagtaatctttacaagtattgcaataacagtattttttttaagaatttctgatttatcttatctttggttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="-" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="111919" stop="110654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111619" g_stop="110954" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="-" ref_id="SGN-E228378" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111619" e_stop="110954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCATATTATGGGAAGTTGGAAGATATTATTGAGCTTAACTATTATGGAAATTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACACTACTCGAGATAGAGGCAAGCAGATTTGCCATATTATGGGAAGTTGGAAGAGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACACCGGTGATCGTGAGGATGATGATCCTTACATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATAAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAATTTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACATAGGAGCATATGCCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTATGGATGTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTAAAGAATTTCTGATTTATCTTATCTTTGGTTTA</genome_strand>
        <mrna_strand>TTTGCCATATTATGGGAAATTGGAAGATATTATTGAGCTTAACTATTATGGAAAGTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACGCTACTCGAGATAGA-G---G--G-TTT---A-A--A------------AGAGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACAGCGGTGATCGTGAGGATGATGATCTTTATATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATGAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAAATTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACAGAGGAGCATATGTCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTGTGGATCTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTTAAGAATTTCTGATTTATCTTATCTTTGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E389443" ref_strand="+" ref_description="SGN-E389443 [TUS-4-A14]">
      <seq>aatcagaaattcttaaaaaaatactgttattgcaatacttgtaaagattactggttcatccagttataagactgcagattttcataagaaatttgtatccagatccacacacacatgaaaagttcaaatcttaataaaagagtgatgtgattagcatatacaaatagtttttcctttacaccaaaactaaaaagcatgctatgtgtgttcagacatatgctcctctgttgagatttggacatttccataatcaacatcgaaaaaattttcaaattcttgttgttggtagggctcattctcaaatatctcttcttcatcaacttgtcccatgtcaaacacatctcttggttgtaaatgtatagctacactccattctttatctgtttcatcatcaacatagaaaaccatatttgcttgtgatgcttcaatataaagatcatcatcctcacgatcaccgctgtgaatcaatttagaaaaattgacacaattaaagttccaaacatctcttttaaaccctctatctcgagtagcgtcagcccacttgcatttgaaaagcacaaccctgaactttccataatagttaagctcaataatatcttccaatttcccataatatggcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="110672" stop="111920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110972" g_stop="111620" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E389443" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.042" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110972" e_stop="111620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAAATTCTTTAAAAAAATACTGTTATTGCAATACTTGTAAAGATTACTGGTTCATCCAGTTATAAGACTGCAGATTTTCATAAGAAATTTGTATCCACATCCATACACACATGAAAAGTTCAAATCTTAATAAAAGAGTGATGTGATTAGCATATACAAATAGTTTTTCCTTTACACCAAAACTAAAAAGCATGCTATGTGTGTTCAGGCATATGCTCCTATGTTGAGATTTGGACATTTCCATAATCAACATCGAAAAAAATTTCAAATTCTTGTTGTTGGTAGGGCTCATTCTCAAATATCTCTTCTTTATCAACTTGTCCCATGTCAAACACATCTCTTGGTTGTAAATGTATAGCTACACTCCATTCTTTATCTGTTTCATCATCAACATAGAAAACCATATTTGCTTGTGATGCTTCAATGTAAGGATCATCATCCTCACGATCACCGGTGTGAATCAATTTAGAAAAATTGACACAATTAAAGTTCCAAACATCTCTTCCAACTTCCCATAATATGGCAAATCTGCTTGCCTCTATCTCGAGTAGTGTCAGCCCACTTGCATTTGAAAAGCACAACCCTGAAATTTCCATAATAGTTAAGCTCAATAATATCTTCCAACTTCCCATAATATGGCAAAT</genome_strand>
        <mrna_strand>AATCAGAAATTC-TTAAAAAAATACTGTTATTGCAATACTTGTAAAGATTACTGGTTCATCCAGTTATAAGACTGCAGATTTTCATAAGAAATTTGTATCCAGATCCACACACACATGAAAAGTTCAAATCTTAATAAAAGAGTGATGTGATTAGCATATACAAATAGTTTTTCCTTTACACCAAAACTAAAAAGCATGCTATGTGTGTTCAGACATATGCTCCTCTGTTGAGATTTGGACATTTCCATAATCAACATCGAAAAAATTTTCAAATTCTTGTTGTTGGTAGGGCTCATTCTCAAATATCTCTTCTTCATCAACTTGTCCCATGTCAAACACATCTCTTGGTTGTAAATGTATAGCTACACTCCATTCTTTATCTGTTTCATCATCAACATAGAAAACCATATTTGCTTGTGATGCTTCAATATAAAGATCATCATCCTCACGATCACCGCTGTGAATCAATTTAGAAAAATTGACACAATTAAAGTTCCAAACA--TC-T----C-T----T--T-T---AAA----C---CCTCTATCTCGAGTAGCGTCAGCCCACTTGCATTTGAAAAGCACAACCCTGAACTTTCCATAATAGTTAAGCTCAATAATATCTTCCAATTTCCCATAATATGGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E550450" ref_strand="+" ref_description="SGN-E550450 [TUS-5-A26]">
      <seq>aattcttaaaaaaattctgttattgcaatacttgtaaagattactggttcatccagttataagactgcagattttcataagaaatttgtatccagatccacacacacatgaaaagttcaaatcttaataaaagagtgatgtgattagcatatacaaatagtttttcctttacaccaaaactaaaaagcatgctatgtgtgttcagacatatgctcctctgttgagatttggacatttccataatcaacatcgaaaaaattttcaaattcttgttgttggtagggctcattctcaaatatctcttcttcatcaacttgtcccatgtcaaacacatctcttggttgtaaatgtatagctacactccattctttatctgtttcatcatcaacatagaaaaccatatttgcttgtgatgcttcaatataaagatcatcatcctcacgatcaccgctgtgaatcaatttagaaaaattgacacaattaaagttccaaacatctcttttaaaccctctatctcgagtagcgtcagcccacttgcatttgaaaagcacaaccctgaactttccataatagttaagctcaataatatcttccaatttcccataatatggcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="110679" stop="111920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110979" g_stop="111620" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E550450" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.042" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110979" e_stop="111620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTTAAAAAAATACTGTTATTGCAATACTTGTAAAGATTACTGGTTCATCCAGTTATAAGACTGCAGATTTTCATAAGAAATTTGTATCCACATCCATACACACATGAAAAGTTCAAATCTTAATAAAAGAGTGATGTGATTAGCATATACAAATAGTTTTTCCTTTACACCAAAACTAAAAAGCATGCTATGTGTGTTCAGGCATATGCTCCTATGTTGAGATTTGGACATTTCCATAATCAACATCGAAAAAAATTTCAAATTCTTGTTGTTGGTAGGGCTCATTCTCAAATATCTCTTCTTTATCAACTTGTCCCATGTCAAACACATCTCTTGGTTGTAAATGTATAGCTACACTCCATTCTTTATCTGTTTCATCATCAACATAGAAAACCATATTTGCTTGTGATGCTTCAATGTAAGGATCATCATCCTCACGATCACCGGTGTGAATCAATTTAGAAAAATTGACACAATTAAAGTTCCAAACATCTCTTCCAACTTCCCATAATATGGCAAATCTGCTTGCCTCTATCTCGAGTAGTGTCAGCCCACTTGCATTTGAAAAGCACAACCCTGAAATTTCCATAATAGTTAAGCTCAATAATATCTTCCAACTTCCCATAATATGGCAAAT</genome_strand>
        <mrna_strand>AATTC-TTAAAAAAATTCTGTTATTGCAATACTTGTAAAGATTACTGGTTCATCCAGTTATAAGACTGCAGATTTTCATAAGAAATTTGTATCCAGATCCACACACACATGAAAAGTTCAAATCTTAATAAAAGAGTGATGTGATTAGCATATACAAATAGTTTTTCCTTTACACCAAAACTAAAAAGCATGCTATGTGTGTTCAGACATATGCTCCTCTGTTGAGATTTGGACATTTCCATAATCAACATCGAAAAAATTTTCAAATTCTTGTTGTTGGTAGGGCTCATTCTCAAATATCTCTTCTTCATCAACTTGTCCCATGTCAAACACATCTCTTGGTTGTAAATGTATAGCTACACTCCATTCTTTATCTGTTTCATCATCAACATAGAAAACCATATTTGCTTGTGATGCTTCAATATAAAGATCATCATCCTCACGATCACCGCTGTGAATCAATTTAGAAAAATTGACACAATTAAAGTTCCAAACA--TC-T----C-T----T--T-T---AAA----C---CCTCTATCTCGAGTAGCGTCAGCCCACTTGCATTTGAAAAGCACAACCCTGAACTTTCCATAATAGTTAAGCTCAATAATATCTTCCAATTTCCCATAATATGGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CP53XY/sgn_ests_tomato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0141H05-T8zXU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0141H05.1" temp_strand="+" temp_description="C12HBa0141H05.1  AC218455.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0141H05*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="117133" stop="118387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117433" g_stop="118087" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0141H05.1" gen_strand="+" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0141H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117433" e_stop="118087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAACCAGG-TCTTACTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCAGGAGTACAACATGCAGCTGCTGTGGCTCCCCTCATGGATGCCTCATTGGAAGCAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACGAGTGATCAGCATGAAATTTTCACTACATTCTTAAAGTTGAAACCTCCAGTCTTCAAAGGTGTTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATACGGTGTTGAGTTTGTGACCTACCAGTTTCAGGGGAATGCCATAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGGGACAAGAGGAGAGATGAGTTCCTGAGCCTAGAGCAAGGCAGGATGTTTGTTACTGCTTGTGAGGCTAAATTTCGTGCACTATCGAGGTATGCCACCCAGCTTTACTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGTAGATCCCAGCCTTACAGATAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>47</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="7950" PGL_stop="16337"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7950" e_stop="8287"/>
            <exon e_start="9266" e_stop="9367"/>
            <exon e_start="10103" e_stop="10244"/>
            <exon e_start="10377" e_stop="10423"/>
            <exon e_start="16112" e_stop="16337"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.994"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.132" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="7950" e_stop="8287" e_length="338"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="8288" i_stop="9265" i_length="978"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9266" e_stop="9367" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9368" i_stop="10102" i_length="735"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10103" e_stop="10244" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.952">
            <gDNA_intron_boundary i_start="10245" i_stop="10376" i_length="132"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10377" e_stop="10423" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.132">
            <gDNA_intron_boundary i_start="10424" i_stop="16111" i_length="5688"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="16112" e_stop="16337" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7950" stop="8287"/>
              <exon start="9266" stop="9367"/>
              <exon start="10103" stop="10244"/>
              <exon start="10377" stop="10423"/>
              <exon start="16112" stop="16337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCTATCCATCTTTCAAGTCCGGTAATTCCCAAATTGTTGTATTTTTGCTTGTGGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATG : GTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAG : GAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGG : ATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAG : TTCATATTTGAAGATCTTCAGAATGGACTTGTGTGATTGAGTACTACATTTGAATGACACATGTATATTACCTAAACTGATTCAGCGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGAGAAGGAAGAAAGAAAAGAAGCATCAGTTGAGGTCG</gDNA_template>
            <first_frame> K  I  Y  P  S  F  K  S  G  N  S  Q  I  V  V  F  L  L  V  E  K  K  I  Y  T  N  L  L  S  S  C  V  L  I  T  L  S  S  Q  S  P  P  Q  N  L  *  S  F  L  K  I  F  L  F  M  P  Q  L  L  S  F  C  S  *  N  C  S  F  *  T  G  G  F  P  F  *  F  *  T  Q  K  *  K  K  W  E  K  I  K  L  T  K  L  C  S  E  Q  G  W  V  L  A  Q  V  D  L  M  K  L  M  M  E  W :   W  M  V  L  F  I  H  Q  S  G  M  R  L  V  *  Q  A  S  K  H  L  I  Q  L  P  G  K  S  S  N  R  N  R  R :   K  K  K  *  E  K  E  S  *  K  Q  T  K  I  K  *  *  G  N  T  G  L  S  *  M  L  K  G  P  A  N  S  L  M  E  G  I  I  P  A  V  N  T  A  A  K  R  :  I  R  R  T  K  M  L  G  N  R  E  A  K  R  E  S :   S  Y  L  K  I  F  R  M  D  L  C  D  *  V  L  H  L  N  D  T  C  I  L  P  K  L  I  Q  R  S  R  R  Y  S  D  S  S  S  S  S  S  S  S  E  S  S  S  S  D  D  E  D  R  E  S  R  K  S  R  S  K  S  K  R  R  K  K  E  K  K  H  Q  L  R  S </first_frame>
            <second_frame>  K  S  I  H  L  S  S  P  V  I  P  K  L  L  Y  F  C  L  W  K  R  R  S  I  P  I  C  Y  H  R  V  F  *  *  P  F  H  L  K  V  H  P  K  T  Y  K  V  S  S  R  S  S  F  L  C  H  N  Y  S  L  F  A  L  E  I  V  R  S  E  L  G  V  F  P  F  D  F  E  P  K  S  K  K  N  G  K  K  S  S  L  Q  S  Y  A  A  S  K  V  G  F  *  L  R  W  T  *  *  S  *  *  W  N   : G  G  W  F  F  S  Y  T  R  V  A  C  G  S  F  S  K  P  Q  N  I  S  Y  S  Y  L  G  R  V  Q  T  E  T  E   : G  R  R  S  E  K  R  R  A  R  S  R  Q  R  *  N  D  E  G  I  Q  G  S  A  R  C  *  K  G  Q  Q  T  L  S  W  K  E  S  F  Q  Q  *  T  Q  P  Q  K  G :   *  E  G  Q  R  C  *  E  T  E  K  Q  K  E  K   : V  H  I  *  R  S  S  E  W  T  C  V  I  E  Y  Y  I  *  M  T  H  V  Y  Y  L  N  *  F  S  V  Q  G  D  I  P  I  P  A  L  Q  A  H  H  L  N  L  Q  V  L  T  M  K  I  E  N  P  E  N  Q  D  P  S  L  R  E  G  R  K  K  R  S  I  S  *  G   </second_frame>
            <third_frame>   N  L  S  I  F  Q  V  R  *  F  P  N  C  C  I  F  A  C  G  K  E  D  L  Y  Q  S  V  I  I  V  C  F  D  N  P  F  I  S  K  S  T  P  K  P  I  K  F  P  Q  D  L  P  F  Y  A  T  T  T  L  F  L  L  L  K  L  F  V  L  N  W  G  F  S  L  L  I  L  N  P  K  V  K  K  M  G  K  N  Q  A  Y  K  A  M  Q  R  A  R  L  G  S  S  S  G  G  P  D  E  V  D  D  G  M  :  V  D  G  S  F  H  T  P  E  W  H  A  A  R  L  A  S  L  K  T  S  H  T  V  T  W  E  E  F  K  Q  K  Q  K  :  E  E  E  V  R  K  G  E  L  E  A  D  K  D  K  M  M  R  E  Y  R  A  Q  L  D  A  E  R  A  S  K  L  S  H  G  R  N  H  S  S  S  K  H  S  R  K  K   : D  K  K  D  K  D  A  R  K  Q  R  S  K  K  R  K  :  F  I  F  E  D  L  Q  N  G  L  V  *  L  S  T  T  F  E  *  H  M  Y  I  T  *  T  D  S  A  F  K  E  I  F  R  F  Q  L  F  K  L  I  I  *  I  F  K  F  *  R  *  R  *  R  I  Q  K  I  K  I  Q  V  *  E  K  E  E  R  K  E  A  S  V  E  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7979" stop="8287"/>
                    <exon start="9266" stop="9367"/>
                    <exon start="10103" stop="10244"/>
                    <exon start="10377" stop="10423"/>
                    <exon start="16112" stop="16147"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPNCCIFACGKEDLYQSVIIVCFDNPFISKSTPKPIKFPQDLPFYATTTLFLLLKLFVLNWGFSLLILNPKVKKMGKNQAYKAMQRARLGSSSGGPDEVDDGMVDGSFHTPEWHAARLASLKTSHTVTWEEFKQKQKEEEVRKGELEADKDKMMREYRAQLDAERASKLSHGRNHSSSKHSRKKDKKDKDARKQRSKKRKFIFEDLQNGLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8006" e_stop="8287"/>
            <exon e_start="9266" e_stop="9367"/>
            <exon e_start="10103" e_stop="10244"/>
            <exon e_start="10377" e_stop="10423"/>
            <exon e_start="16197" e_stop="16302"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8006" e_stop="8287" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="8288" i_stop="9265" i_length="978"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9266" e_stop="9367" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9368" i_stop="10102" i_length="735"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10103" e_stop="10244" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.952">
            <gDNA_intron_boundary i_start="10245" i_stop="10376" i_length="132"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10377" e_stop="10423" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="10424" i_stop="16196" i_length="5773"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16197" e_stop="16302" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8006" stop="8287"/>
              <exon start="9266" stop="9367"/>
              <exon start="10103" stop="10244"/>
              <exon start="10377" stop="10423"/>
              <exon start="16197" stop="16302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321341" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAAGAAGATCTATACCAATCTGTTATCATCGTGTGTTTTGATAACCCTTTCATCTCAAAGTCCACCCCAAAACCTATAAAGTTTCCTCAAGATCTTCCTTTTTATGCCACAACTACTCTCTTTTTGCTCTTGAAATTGTTCGTTCTGAACTGGGGGTTTTCCCTTTTGATTTTGAACCCAAAAGTAAAAAAAATGGGAAAAAATCAAGCTTACAAAGCTATGCAGCGAGCAAGGTTGGGTTCTAGCTCAGGTGGACCTGATGAAGTTGATGATGGAATG : GTGGATGGTTCTTTTCATACACCAGAGTGGCATGCGGCTCGTTTAGCAAGCCTCAAAACATCTCATACAGTTACCTGGGAAGAGTTCAAACAGAAACAGAAG : GAAGAAGAAGTGAGAAAAGGAGAGCTAGAAGCAGACAAAGATAAAATGATGAGGGAATACAGGGCTCAGCTAGATGCTGAAAGGGCCAGCAAACTCTCTCATGGAAGGAATCATTCCAGCAGTAAACACAGCCGCAAAAAGG : ATAAGAAGGACAAAGATGCTAGGAAACAGAGAAGCAAAAAGAGAAAG : CGTTCAAGGAGATATTCCGATTCCAGCTCTTCAAGCTCATCATCTGAATCTTCAAGTTCTGACGATGAAGATAGAGAATCCAGAAAATCAAGATCCAAGTCTAAGA</gDNA_template>
            <first_frame> G  K  E  D  L  Y  Q  S  V  I  I  V  C  F  D  N  P  F  I  S  K  S  T  P  K  P  I  K  F  P  Q  D  L  P  F  Y  A  T  T  T  L  F  L  L  L  K  L  F  V  L  N  W  G  F  S  L  L  I  L  N  P  K  V  K  K  M  G  K  N  Q  A  Y  K  A  M  Q  R  A  R  L  G  S  S  S  G  G  P  D  E  V  D  D  G  M  :  V  D  G  S  F  H  T  P  E  W  H  A  A  R  L  A  S  L  K  T  S  H  T  V  T  W  E  E  F  K  Q  K  Q  K  :  E  E  E  V  R  K  G  E  L  E  A  D  K  D  K  M  M  R  E  Y  R  A  Q  L  D  A  E  R  A  S  K  L  S  H  G  R  N  H  S  S  S  K  H  S  R  K  K   : D  K  K  D  K  D  A  R  K  Q  R  S  K  K  R  K  :  R  S  R  R  Y  S  D  S  S  S  S  S  S  S  S  E  S  S  S  S  D  D  E  D  R  E  S  R  K  S  R  S  K  S  K  </first_frame>
            <second_frame>  E  K  K  I  Y  T  N  L  L  S  S  C  V  L  I  T  L  S  S  Q  S  P  P  Q  N  L  *  S  F  L  K  I  F  L  F  M  P  Q  L  L  S  F  C  S  *  N  C  S  F  *  T  G  G  F  P  F  *  F  *  T  Q  K  *  K  K  W  E  K  I  K  L  T  K  L  C  S  E  Q  G  W  V  L  A  Q  V  D  L  M  K  L  M  M  E  W :   W  M  V  L  F  I  H  Q  S  G  M  R  L  V  *  Q  A  S  K  H  L  I  Q  L  P  G  K  S  S  N  R  N  R  R :   K  K  K  *  E  K  E  S  *  K  Q  T  K  I  K  *  *  G  N  T  G  L  S  *  M  L  K  G  P  A  N  S  L  M  E  G  I  I  P  A  V  N  T  A  A  K  R  :  I  R  R  T  K  M  L  G  N  R  E  A  K  R  E  S :   V  Q  G  D  I  P  I  P  A  L  Q  A  H  H  L  N  L  Q  V  L  T  M  K  I  E  N  P  E  N  Q  D  P  S  L  R </second_frame>
            <third_frame>   K  R  R  S  I  P  I  C  Y  H  R  V  F  *  *  P  F  H  L  K  V  H  P  K  T  Y  K  V  S  S  R  S  S  F  L  C  H  N  Y  S  L  F  A  L  E  I  V  R  S  E  L  G  V  F  P  F  D  F  E  P  K  S  K  K  N  G  K  K  S  S  L  Q  S  Y  A  A  S  K  V  G  F  *  L  R  W  T  *  *  S  *  *  W  N   : G  G  W  F  F  S  Y  T  R  V  A  C  G  S  F  S  K  P  Q  N  I  S  Y  S  Y  L  G  R  V  Q  T  E  T  E   : G  R  R  S  E  K  R  R  A  R  S  R  Q  R  *  N  D  E  G  I  Q  G  S  A  R  C  *  K  G  Q  Q  T  L  S  W  K  E  S  F  Q  Q  *  T  Q  P  Q  K  G :   *  E  G  Q  R  C  *  E  T  E  K  Q  K  E  K   : A  F  K  E  I  F  R  F  Q  L  F  K  L  I  I  *  I  F  K  F  *  R  *  R  *  R  I  Q  K  I  K  I  Q  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8006" stop="8287"/>
                    <exon start="9266" stop="9367"/>
                    <exon start="10103" stop="10244"/>
                    <exon start="10377" stop="10423"/>
                    <exon start="16197" stop="16301"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKEDLYQSVIIVCFDNPFISKSTPKPIKFPQDLPFYATTTLFLLLKLFVLNWGFSLLILNPKVKKMGKNQAYKAMQRARLGSSSGGPDEVDDGMVDGSFHTPEWHAARLASLKTSHTVTWEEFKQKQKEEEVRKGELEADKDKMMREYRAQLDAERASKLSHGRNHSSSKHSRKKDKKDKDARKQRSKKRKRSRRYSDSSSSSSSSESSSSDDEDRESRKSRSKSK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="23468" PGL_stop="23827"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23468" e_stop="23827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="23468" e_stop="23827" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23468" stop="23827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAGATATTGTCCACCAGAATTTTTCATTTCAGTCTAAAATAAAATCCACCCCATAAAGATACATCAAACAACTCTCCATACATAAGTCAGCTTCATAACTAAGTGTTTGCATAAGAAACTCATCCATGTTCCCGGACGGAATGCACACATATATACATGGGGAGATATATTGTCAGTTACACATAACATGTAGATCAAACCTGCAACAATCTGTCAGCAATTATTCACATGCGCTGGTATTCAGGATTAAATGCAATCGACTCCCTGTAAATTAGCTCCTTCATCTGTTCCTCTGTAAGCGCATGCTGCTCAAAGTCGAAGCTAAAAGGAGTCATGCAAATGGGCTCGTCACTGATAT</gDNA_template>
            <first_frame> H  R  Y  C  P  P  E  F  F  I  S  V  *  N  K  I  H  P  I  K  I  H  Q  T  T  L  H  T  *  V  S  F  I  T  K  C  L  H  K  K  L  I  H  V  P  G  R  N  A  H  I  Y  T  W  G  D  I  L  S  V  T  H  N  M  *  I  K  P  A  T  I  C  Q  Q  L  F  T  C  A  G  I  Q  D  *  M  Q  S  T  P  C  K  L  A  P  S  S  V  P  L  *  A  H  A  A  Q  S  R  S  *  K  E  S  C  K  W  A  R  H  *  Y </first_frame>
            <second_frame>  T  D  I  V  H  Q  N  F  S  F  Q  S  K  I  K  S  T  P  *  R  Y  I  K  Q  L  S  I  H  K  S  A  S  *  L  S  V  C  I  R  N  S  S  M  F  P  D  G  M  H  T  Y  I  H  G  E  I  Y  C  Q  L  H  I  T  C  R  S  N  L  Q  Q  S  V  S  N  Y  S  H  A  L  V  F  R  I  K  C  N  R  L  P  V  N  *  L  L  H  L  F  L  C  K  R  M  L  L  K  V  E  A  K  R  S  H  A  N  G  L  V  T  D   </second_frame>
            <third_frame>   Q  I  L  S  T  R  I  F  H  F  S  L  K  *  N  P  P  H  K  D  T  S  N  N  S  P  Y  I  S  Q  L  H  N  *  V  F  A  *  E  T  H  P  C  S  R  T  E  C  T  H  I  Y  M  G  R  Y  I  V  S  Y  T  *  H  V  D  Q  T  C  N  N  L  S  A  I  I  H  M  R  W  Y  S  G  L  N  A  I  D  S  L  *  I  S  S  F  I  C  S  S  V  S  A  C  C  S  K  S  K  L  K  G  V  M  Q  M  G  S  S  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0141H05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="34330" PGL_stop="23477"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34330" e_stop="34075"/>
            <exon e_start="33918" e_stop="33789"/>
            <exon e_start="33319" e_stop="33182"/>
            <exon e_start="30940" e_stop="30608"/>
            <exon e_start="30113" e_stop="29933"/>
            <exon e_start="23869" e_stop="23477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34330" e_stop="34075" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34074" i_stop="33919" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33918" e_stop="33789" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.919" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33788" i_stop="33320" i_length="469"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33319" e_stop="33182" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.955">
            <gDNA_intron_boundary i_start="33181" i_stop="30941" i_length="2241"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30940" e_stop="30608" e_length="333"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.981">
            <gDNA_intron_boundary i_start="30607" i_stop="30114" i_length="494"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30113" e_stop="29933" e_length="181"/>
          </exon>
          <intron i_serial="5" don_prob="0.927" acc_prob="0.950">
            <gDNA_intron_boundary i_start="29932" i_stop="23870" i_length="6063"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="23869" e_stop="23477" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34330" stop="34075"/>
              <exon start="33918" stop="33789"/>
              <exon start="33319" stop="33182"/>
              <exon start="30940" stop="30608"/>
              <exon start="30113" stop="29933"/>
              <exon start="23869" stop="23477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34327" stop="34075"/>
              <exon start="33918" stop="33789"/>
              <exon start="33319" stop="33182"/>
              <exon start="30940" stop="30608"/>
              <exon start="30113" stop="29933"/>
              <exon start="23869" stop="23494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34315" stop="34075"/>
              <exon start="33918" stop="33789"/>
              <exon start="33319" stop="33182"/>
              <exon start="30940" stop="30608"/>
              <exon start="30113" stop="29933"/>
              <exon start="23869" stop="23477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34140" stop="34075"/>
              <exon start="33918" stop="33789"/>
              <exon start="33319" stop="33185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34139" stop="34075"/>
              <exon start="33918" stop="33789"/>
              <exon start="33319" stop="33182"/>
              <exon start="30940" stop="30654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33818" stop="33789"/>
              <exon start="33319" stop="33182"/>
              <exon start="30940" stop="30608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30940" stop="30608"/>
              <exon start="30113" stop="29933"/>
              <exon start="23869" stop="23802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23728" stop="23477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215605" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAACAAAATTATTTCCAAAATATGGATGGTTCCGTTCCGCAAACGGATACGATGATGTCGGATGTGGCTGCACCTCCGGCTCAACAACCACCTCCGCCGTCACAACCGCTGGCTGGAATGGATAATATTCCGGCGACGTTAAGCCATGGTGGCAGGTTCATTCAATACAATATTTTTGGTAATATTTTTGAAGTTACTGCTAAGTATAAACCTCCTATAATGCCAATTGGTAAAGGTGCTTATGGAATCGTTTG : TTCTGCTTTGAATTCGGAGACAAATGAATCTGTAGCAATTAAGAAAATTGCTAATGCTTTTGATAACAAGATTGATGCTAAGAGGACTTTGAGAGAGATCAAGCTTCTTCGACATATGGATCATGAAAAT : ATTGTTGCGATCAGAGATATAATTCCACCACCACAGAGAGAAGCCTTTAACGATGTTTACATTGCGTATGAGCTTATGGATACTGATCTCCATCAAATTATTCGCTCGAATCAGGGTTTATCTGAGGAGCACTGCCAG : TATTTCTTGTATCAGATCCTCCGTGGGTTGAAATACATACATTCTGCAAATGTTTTGCACAGAGACTTAAAGCCTAGCAATCTTCTCTTGAATGCCAACTGTGATTTGAAGATATGTGATTTTGGGCTAGCTCGTGTCACTTCTGAAACTGACTTTATGACCGAATATGTTGTGACAAGATGGTATCGTCCACCTGAGCTGTTGTTGAATTCATCCGACTATACTGCAGCAATTGATGTATGGTCAGTGGGTTGCATCTTCATGGAGTTGATGGACAGAAAACCCCTCTTCCCTGGCAGAGATCATGTACACCAGCTGCGTCTTATTATGGAG : TTGATTGGCACTCCTTCAGAGGCTGAAATGGAATTTTTAAATGAGAATGCAAAACGCTATATCCGACAACTTCCTCTTTACCGTCGACAATCATTTACTGAAAAGTTCCCGCATGTAAACCCAGCTGCTATTGATCTTGTCGAGAAAATGTTGACATTTGATCCCAGAAGGAGAATAACAG : TTGAAGACGCTCTTGCACATCCTTACCTAACATCGCTCCATGATATCAGTGACGAGCCCATTTGCATGACTCCTTTTAGCTTCGACTTTGAGCAGCATGCGCTTACAGAGGAACAGATGAAGGAGCTAATTTACAGGGAGTCGATTGCATTTAATCCTGAATACCAGCGCATGTGAATAATTGCTGACAGATTGTTGCAGGTTTGATCTACATGTTATGTGTAACTGACAATATATCTCCCCATGTATATATGTGTGCATTCCGTCCGGGAACATGGATGAGTTTCTTATGCAAACACTTAGTTATGAAGCTGACTTATGTATGGAGAGTTGTTTGATGTATCTTTATGGGGTGGATTTTATTTTAGACTGAAATGAAAAATTCTGGTGGACA</gDNA_template>
            <first_frame> L  N  K  I  I  S  K  I  W  M  V  P  F  R  K  R  I  R  *  C  R  M  W  L  H  L  R  L  N  N  H  L  R  R  H  N  R  W  L  E  W  I  I  F  R  R  R  *  A  M  V  A  G  S  F  N  T  I  F  L  V  I  F  L  K  L  L  L  S  I  N  L  L  *  C  Q  L  V  K  V  L  M  E  S  F   : V  L  L  *  I  R  R  Q  M  N  L  *  Q  L  R  K  L  L  M  L  L  I  T  R  L  M  L  R  G  L  *  E  R  S  S  F  F  D  I  W  I  M  K  I :   L  L  R  S  E  I  *  F  H  H  H  R  E  K  P  L  T  M  F  T  L  R  M  S  L  W  I  L  I  S  I  K  L  F  A  R  I  R  V  Y  L  R  S  T  A  S :   I  S  C  I  R  S  S  V  G  *  N  T  Y  I  L  Q  M  F  C  T  E  T  *  S  L  A  I  F  S  *  M  P  T  V  I  *  R  Y  V  I  L  G  *  L  V  S  L  L  K  L  T  L  *  P  N  M  L  *  Q  D  G  I  V  H  L  S  C  C  *  I  H  P  T  I  L  Q  Q  L  M  Y  G  Q  W  V  A  S  S  W  S  *  W  T  E  N  P  S  S  L  A  E  I  M  Y  T  S  C  V  L  L  W  S :   *  L  A  L  L  Q  R  L  K  W  N  F  *  M  R  M  Q  N  A  I  S  D  N  F  L  F  T  V  D  N  H  L  L  K  S  S  R  M  *  T  Q  L  L  L  I  L  S  R  K  C  *  H  L  I  P  E  G  E  *  Q  :  L  K  T  L  L  H  I  L  T  *  H  R  S  M  I  S  V  T  S  P  F  A  *  L  L  L  A  S  T  L  S  S  M  R  L  Q  R  N  R  *  R  S  *  F  T  G  S  R  L  H  L  I  L  N  T  S  A  C  E  *  L  L  T  D  C  C  R  F  D  L  H  V  M  C  N  *  Q  Y  I  S  P  C  I  Y  V  C  I  P  S  G  N  M  D  E  F  L  M  Q  T  L  S  Y  E  A  D  L  C  M  E  S  C  L  M  Y  L  Y  G  V  D  F  I  L  D  *  N  E  K  F  W  W  T </first_frame>
            <second_frame>  *  T  K  L  F  P  K  Y  G  W  F  R  S  A  N  G  Y  D  D  V  G  C  G  C  T  S  G  S  T  T  T  S  A  V  T  T  A  G  W  N  G  *  Y  S  G  D  V  K  P  W  W  Q  V  H  S  I  Q  Y  F  W  *  Y  F  *  S  Y  C  *  V  *  T  S  Y  N  A  N  W  *  R  C  L  W  N  R  L  :  F  C  F  E  F  G  D  K  *  I  C  S  N  *  E  N  C  *  C  F  *  *  Q  D  *  C  *  E  D  F  E  R  D  Q  A  S  S  T  Y  G  S  *  K   : Y  C  C  D  Q  R  Y  N  S  T  T  T  E  R  S  L  *  R  C  L  H  C  V  *  A  Y  G  Y  *  S  P  S  N  Y  S  L  E  S  G  F  I  *  G  A  L  P   : V  F  L  V  S  D  P  P  W  V  E  I  H  T  F  C  K  C  F  A  Q  R  L  K  A  *  Q  S  S  L  E  C  Q  L  *  F  E  D  M  *  F  W  A  S  S  C  H  F  *  N  *  L  Y  D  R  I  C  C  D  K  M  V  S  S  T  *  A  V  V  E  F  I  R  L  Y  C  S  N  *  C  M  V  S  G  L  H  L  H  G  V  D  G  Q  K  T  P  L  P  W  Q  R  S  C  T  P  A  A  S  Y  Y  G   : V  D  W  H  S  F  R  G  *  N  G  I  F  K  *  E  C  K  T  L  Y  P  T  T  S  S  L  P  S  T  I  I  Y  *  K  V  P  A  C  K  P  S  C  Y  *  S  C  R  E  N  V  D  I  *  S  Q  K  E  N  N  S :   *  R  R  S  C  T  S  L  P  N  I  A  P  *  Y  Q  *  R  A  H  L  H  D  S  F  *  L  R  L  *  A  A  C  A  Y  R  G  T  D  E  G  A  N  L  Q  G  V  D  C  I  *  S  *  I  P  A  H  V  N  N  C  *  Q  I  V  A  G  L  I  Y  M  L  C  V  T  D  N  I  S  P  H  V  Y  M  C  A  F  R  P  G  T  W  M  S  F  L  C  K  H  L  V  M  K  L  T  Y  V  W  R  V  V  *  C  I  F  M  G  W  I  L  F  *  T  E  M  K  N  S  G  G   </second_frame>
            <third_frame>   E  Q  N  Y  F  Q  N  M  D  G  S  V  P  Q  T  D  T  M  M  S  D  V  A  A  P  P  A  Q  Q  P  P  P  P  S  Q  P  L  A  G  M  D  N  I  P  A  T  L  S  H  G  G  R  F  I  Q  Y  N  I  F  G  N  I  F  E  V  T  A  K  Y  K  P  P  I  M  P  I  G  K  G  A  Y  G  I  V  C :   S  A  L  N  S  E  T  N  E  S  V  A  I  K  K  I  A  N  A  F  D  N  K  I  D  A  K  R  T  L  R  E  I  K  L  L  R  H  M  D  H  E  N  :  I  V  A  I  R  D  I  I  P  P  P  Q  R  E  A  F  N  D  V  Y  I  A  Y  E  L  M  D  T  D  L  H  Q  I  I  R  S  N  Q  G  L  S  E  E  H  C  Q  :  Y  F  L  Y  Q  I  L  R  G  L  K  Y  I  H  S  A  N  V  L  H  R  D  L  K  P  S  N  L  L  L  N  A  N  C  D  L  K  I  C  D  F  G  L  A  R  V  T  S  E  T  D  F  M  T  E  Y  V  V  T  R  W  Y  R  P  P  E  L  L  L  N  S  S  D  Y  T  A  A  I  D  V  W  S  V  G  C  I  F  M  E  L  M  D  R  K  P  L  F  P  G  R  D  H  V  H  Q  L  R  L  I  M  E  :  L  I  G  T  P  S  E  A  E  M  E  F  L  N  E  N  A  K  R  Y  I  R  Q  L  P  L  Y  R  R  Q  S  F  T  E  K  F  P  H  V  N  P  A  A  I  D  L  V  E  K  M  L  T  F  D  P  R  R  R  I  T   : V  E  D  A  L  A  H  P  Y  L  T  S  L  H  D  I  S  D  E  P  I  C  M  T  P  F  S  F  D  F  E  Q  H  A  L  T  E  E  Q  M  K  E  L  I  Y  R  E  S  I  A  F  N  P  E  Y  Q  R  M  *  I  I  A  D  R  L  L  Q  V  *  S  T  C  Y  V  *  L  T  I  Y  L  P  M  Y  I  C  V  H  S  V  R  E  H  G  *  V  S  Y  A  N  T  *  L  *  S  *  L  M  Y  G  E  L  F  D  V  S  L  W  G  G  F  Y  F  R  L  K  *  K  I  L  V  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34328" stop="34075"/>
                    <exon start="33918" stop="33789"/>
                    <exon start="33319" stop="33182"/>
                    <exon start="30940" stop="30608"/>
                    <exon start="30113" stop="29933"/>
                    <exon start="23869" stop="23694"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1209</number_coding_nucleotides>
                  <number_encoded_amino_acids>403</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQNYFQNMDGSVPQTDTMMSDVAAPPAQQPPPPSQPLAGMDNIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNESVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENIVAIRDIIPPPQREAFNDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRPPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLIMELIGTPSEAEMEFLNENAKRYIRQLPLYRRQSFTEKFPHVNPAAIDLVEKMLTFDPRRRITVEDALAHPYLTSLHDISDEPICMTPFSFDFEQHALTEEQMKELIYRESIAFNPEYQRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="40163" PGL_stop="42873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40163" e_stop="42873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="40163" e_stop="42873" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40163" stop="40875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40163" stop="40758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40163" stop="40688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40234" stop="40913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40234" stop="40592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40683" stop="41341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40752" stop="41513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40752" stop="41412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40979" stop="41521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41155" stop="41485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41362" stop="41920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41366" stop="42129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41446" stop="42235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41448" stop="41981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41522" stop="42219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42083" stop="42802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42086" stop="42749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42441" stop="42873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTATTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAGTTGTCTGTAGTCTATGCAAATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCTTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGAACTACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACAAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTATAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAAGGAAAGCGTAACAATGGGCCCTATCGTTAGTCTGTCCGTTGCCCCTACCTTGTTGTGATGTAGTGGCTCCAGTTTGCCCAGCACCTCGGCTGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTTCAATATCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGCCTCTCTGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGTACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTAGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCCTGGAAGGATTTTGCCGTTGCCGCTATCTGTAGGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCAGCGAATTCGCTCTTGGGGACTGAAACATAATTGGGTGGCATATTTGGATAGTGCGTGAAACCTAGCCTCGTAAGAATTTACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTTGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTTGACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTTAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATTCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCTTGAGGTACTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAATTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACTAGGTGTTTGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGTCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  E  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  S  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  F  F  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  I  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  I  Q  L  S  V  V  Y  A  N  S  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  R  F  K  I  D  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  A  N  Y  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  I  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  S  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  K  E  S  V  T  M  G  P  I  V  S  L  S  V  A  P  T  L  L  *  C  S  G  S  S  L  P  S  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  F  N  I  P  T  S  I  T  L  S  G  V  K  H  R  P  L  *  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  S  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  S  L  L  G  T  E  T  *  L  G  G  I  F  G  *  C  V  K  P  S  L  V  R  I  Y  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  L  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  D  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  R  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  Y  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  N  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  T  R  C  L  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  V  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  L  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  M  Q  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  L  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  Q  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  *  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  V  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  R  K  A  *  Q  W  A  L  S  L  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  A  P  R  L  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  S  I  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  V  P  L  N  S  P  P  F  R  N  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  R  A  E  I  R  N  S  D  L  N  P  F  T  N  Q  R  I  R  S  W  G  L  K  H  N  W  V  A  Y  L  D  S  A  *  N  L  A  S  *  E  F  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  C  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  L  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  L  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  F  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  T  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  I  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  V  C  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  V  A  V  L  </second_frame>
            <third_frame>   I  P  *  R  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  Q  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  L  L  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  Y  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  D  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  Y  S  V  V  C  S  L  C  K  F  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  F  C  L  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  P  V  Q  D  R  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  K  T  R  E  L  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  K  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  T  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  K  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  *  S  V  R  C  P  Y  L  V  V  M  *  W  L  Q  F  A  Q  H  L  G  C  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  Y  P  H  I  H  N  T  L  W  S  Q  A  *  A  S  L  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  Y  H  *  T  H  L  P  F  E  T  F  L  M  S  M  S  *  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  P  G  R  I  L  P  L  P  L  S  V  G  P  K  S  A  I  L  T  S  T  P  S  Q  T  S  E  F  A  L  G  D  *  N  I  I  G  W  H  I  W  I  V  R  E  T  *  P  R  K  N  L  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  F  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  *  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  *  I  P  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  S  C  G  E  P  *  *  P  H  V  V  P  P  E  L  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  D  *  V  F  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  L  S  L  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42395" stop="42649"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVSILRFRTLEDWRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSHSSRMLYLRSLRYWCRKHWGCLALIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40890" stop="41135"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSKNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLAQRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40427" stop="40666"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEIQIWLKNPVHQAHERSRGIRKTKRHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41904" stop="42140"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPLNSPPFRNLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICRAEIRNSDLNPFTNQRIRSWGLKHNWVAYLDSA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42650" stop="42871"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWQSLILHLFNFPILPFSYYLLSRWRSHCPSIRWTRCLSSSPRGRPPTTSTTAPCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41594" stop="41803"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPSTSAVLVTTITSTTTSSRITASTMTTSTSSYWGSITLSGTIFPNMFNIPTSITLSGVKHRPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40868" stop="41068"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYRNGACARFKIDTEVNIPIWWHTRKICREHIQKLANYRNRLNRRYLGSVILEMCQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="8"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42675" stop="42872"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNPSFCTCSISPSSPSLITSSVGGGVTALVSDGLGVCPLPLEDVLPRPLPRPLVAVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="9"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40359" stop="40556"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="42806" PGL_stop="42253"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42806" e_stop="42253"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="42806" e_stop="42253" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42806" stop="42253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42601" stop="42263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGTCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAATTGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGTACCTCAAGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGAATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTAAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTCAAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATTGAGTGTCAACAAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  S  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  S  S  G  G  T  T  C  G  Y  Y  G  S  P  H  E  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  Q  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  I  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  V  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  N  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  K  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  K  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  Q  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  L  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  Y  L  K  L  R  R  Y  N  M  R  L  L  W  L  P  A  *  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  S  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  I  L  S  V  N  K  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42805" stop="42254"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDGEIEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPVPQAPEVQHAATMAPRMNVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESKDAYDFLVDCHELLHKMGIVKRFGVEFVSYQFQGNAKMWWRSHIECQQTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="42880" PGL_stop="48628"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42880" e_stop="42929"/>
            <exon e_start="47963" e_stop="48628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.800"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.800">
            <gDNA_exon_boundary e_start="42880" e_stop="42929" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42930" i_stop="47962" i_length="5033"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="47963" e_stop="48628" e_length="666"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42880" stop="42929"/>
              <exon start="47963" stop="48628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACAGCCCCAGTGGCTGGATCAGTTGTTTCTTGTCTGGCCAGTGTTGGT : GTTGGTGTTGGTGTAGTCGTTGCTCTAGTTCTAACCATCTGCAAAAGAGAGTCAAGATGGTCAGATACCAATTCGTATCGCCTAGATACCAATTGGACTCAAGTAGTAGCACGAAAGAAAGAACGAAAGAGTGAAATTTTCCTAAAGTCTTATAGCCTCTCAAGGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAGACTCTACTAGACCTGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGTTTGTCACGACCCAAATCCGGGCCGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAAGGTAATATCAACATAAAGTAATGCGGAAGACTTAAACTCATTAATAACATCAATTCATTAACTTCTAAAATTCAACATCTATTATTCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACGATCAAATGACTTAACTAAGAGTATTCTAAAAGCTAAAAATACATAAGAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACTTGAAGAAGAAGACCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAATATCCGATATGACGAAGACTGGCTAGAATCACTGCTGAGTTGAAGATGACGGAACGTTTGCTG</gDNA_template>
            <first_frame> P  Q  P  Q  W  L  D  Q  L  F  L  V  W  P  V  L  V :   L  V  L  V  *  S  L  L  *  F  *  P  S  A  K  E  S  Q  D  G  Q  I  P  I  R  I  A  *  I  P  I  G  L  K  *  *  H  E  R  K  N  E  R  V  K  F  S  *  S  L  I  A  S  Q  G  K  V  K  A  S  P  Y  R  S  L  R  L  Y  *  T  C  S  C  V  M  R  P  T  N  L  M  L  *  Y  Q  V  C  H  D  P  N  P  G  R  D  W  H  P  H  L  P  S  Y  V  S  E  P  T  N  L  N  L  N  I  S  R  *  Y  Q  H  K  V  M  R  K  T  *  T  H  *  *  H  Q  F  I  N  F  *  N  S  T  S  I  I  P  Q  N  L  E  V  I  I  T  R  T  S  T  I  K  *  L  N  *  E  Y  S  K  S  *  K  Y  I  R  S  *  S  M  P  E  V  Q  G  I  K  T  *  R  R  R  P  S  P  S  *  K  H  *  L  T  L  N  I  R  Y  D  E  D  W  L  E  S  L  L  S  *  R  *  R  N  V  C   </first_frame>
            <second_frame>  H  S  P  S  G  W  I  S  C  F  L  S  G  Q  C  W   : C  W  C  W  C  S  R  C  S  S  S  N  H  L  Q  K  R  V  K  M  V  R  Y  Q  F  V  S  P  R  Y  Q  L  D  S  S  S  S  T  K  E  R  T  K  E  *  N  F  P  K  V  L  *  P  L  K  E  K  *  R  R  P  P  T  V  P  *  D  S  T  R  P  V  L  V  *  *  D  Q  R  T  *  C  S  D  T  K  F  V  T  T  Q  I  R  A  A  T  G  T  H  T  Y  P  P  M  *  A  N  Q  P  I  *  T  L  T  F  Q  G  N  I  N  I  K  *  C  G  R  L  K  L  I  N  N  I  N  S  L  T  S  K  I  Q  H  L  L  F  P  K  I  W  K  S  S  S  Q  E  H  L  R  S  N  D  L  T  K  S  I  L  K  A  K  N  T  *  E  A  S  P  C  R  K  F  K  A  S  R  L  E  E  E  D  P  V  Q  A  R  S  I  S  S  P  *  I  S  D  M  T  K  T  G  *  N  H  C  *  V  E  D  D  G  T  F  A  </second_frame>
            <third_frame>   T  A  P  V  A  G  S  V  V  S  C  L  A  S  V  G  :  V  G  V  G  V  V  V  A  L  V  L  T  I  C  K  R  E  S  R  W  S  D  T  N  S  Y  R  L  D  T  N  W  T  Q  V  V  A  R  K  K  E  R  K  S  E  I  F  L  K  S  Y  S  L  S  R  K  S  K  G  V  P  L  P  F  L  K  T  L  L  D  L  F  L  C  D  E  T  N  E  P  N  A  L  I  P  S  L  S  R  P  K  S  G  P  R  L  A  P  T  L  T  L  L  C  E  R  T  N  Q  S  K  P  *  H  F  K  V  I  S  T  *  S  N  A  E  D  L  N  S  L  I  T  S  I  H  *  L  L  K  F  N  I  Y  Y  S  P  K  S  G  S  H  H  H  K  N  I  Y  D  Q  M  T  *  L  R  V  F  *  K  L  K  I  H  K  K  L  V  H  A  G  S  S  R  H  Q  D  L  K  K  K  T  Q  S  K  L  E  A  L  A  H  P  E  Y  P  I  *  R  R  L  A  R  I  T  A  E  L  K  M  T  E  R  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42882" stop="42929"/>
                    <exon start="47963" stop="48301"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAPVAGSVVSCLASVGVGVGVVVALVLTICKRESRWSDTNSYRLDTNWTQVVARKKERKSEIFLKSYSLSRKSKGVPLPFLKTLLDLFLCDETNEPNALIPSLSRPKSGPRLAPTLTLLCERTNQSKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47360" e_stop="47718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="47360" e_stop="47718" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47360" stop="47718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCTTCTTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGATCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGGAAAGCAGTCTTTGGCACA</gDNA_template>
            <first_frame> V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  L  L  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  D  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  G  K  Q  S  L  A   </first_frame>
            <second_frame>  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  F  F  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  E  S  S  L  W  H  </second_frame>
            <third_frame>   L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47485" stop="47682"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45808" e_stop="45984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="45808" e_stop="45984" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45808" stop="45984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATAGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCTTCCAACACTTGAATCGTTCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  R  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  I  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  L  P  T  L  E  S  F  S  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  *  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  F  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0141H05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="43165" PGL_stop="42880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43165" e_stop="42880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="43165" e_stop="42880" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43165" stop="42880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTATTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCGTTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACTGGCCAGACAAGAAACAACTGATCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  F  R  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  L  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  L  A  R  Q  E  T  T  D  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  G  L  V  E  Y  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  V  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  C  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  W  P  D  K  K  Q  L  I  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  I  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  G  Q  T  R  N  N  *  S  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43116" stop="42880"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFVLSFVLLLESNWYLGDTNWYLTIFTLFCRWLELEQRLRQHQHWPDKKQLIQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="48708" PGL_stop="47919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48708" e_stop="47919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="48708" e_stop="47919" e_length="790"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48708" stop="47977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48708" stop="48052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48708" stop="48127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48204" stop="47919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGACCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTTCCGTCATCTTCAACTCAGCAGTGATTCTAGCCAGTCTTCGTCATATCGGATATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGGTCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTAAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGATGTTATTAATGAGTTTAAGTCTTCCGCATTACTTTATGTTGATATTACCTTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCGTTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTGACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACTACACCAACACCAACACCGTCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  T  D  D  I  Y  S  V  P  V  V  C  T  D  P  Y  F  Y  V  F  F  L  L  F  V  E  C  S  K  R  S  V  I  F  N  S  A  V  I  L  A  S  L  R  H  I  G  Y  S  G  *  A  N  A  S  S  L  D  W  V  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  *  N  T  L  S  *  V  I  *  S  *  M  F  L  *  *  *  L  P  D  F  G  E  *  *  M  L  N  F  R  S  *  *  I  D  V  I  N  E  F  K  S  S  A  L  L  Y  V  D  I  T  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  G  P  D  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  F  R  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  D  S  L  L  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  S  R  Q  E  T  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  P  M  I  S  T  Q  Y  P  W  F  V  L  T  P  T  F  M  F  S  S  C  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  *  P  V  F  V  I  S  D  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  F  R  I  L  L  V  K  S  F  D  R  R  C  S  C  D  D  D  F  Q  I  L  G  N  N  R  C  *  I  L  E  V  N  E  L  M  L  L  M  S  L  S  L  P  H  Y  F  M  L  I  L  P  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  A  R  I  W  V  V  T  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  V  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  L  T  L  F  C  R  W  L  E  L  E  Q  R  L  H  Q  H  Q  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   D  R  *  Y  L  L  S  T  R  G  L  Y  *  P  L  L  L  C  F  L  L  V  I  C  G  V  Q  Q  T  F  R  H  L  Q  L  S  S  D  S  S  Q  S  S  S  Y  R  I  F  R  V  S  *  C  F  *  L  G  L  G  L  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  E  Y  S  *  L  S  H  L  I  V  D  V  L  V  M  M  T  S  R  F  W  G  I  I  D  V  E  F  *  K  L  M  N  *  C  Y  *  *  V  *  V  F  R  I  T  L  C  *  Y  Y  L  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  R  P  G  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  *  L  S  F  A  D  G  *  N  *  S  N  D  Y  T  N  T  N  T  V  Q  T  R  N  N  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48155" stop="47919"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFVLSFVLLLESNWYLGDTNWYLTILTLFCRWLELEQRLHQHQHRPDKKQLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48587" stop="48381"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVFVISDIQGELMLLAWTGSSSSSLDALNFRHGLASYVFLAFRILLVKSFDRRCSCDDDFQILGNNRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="90766" PGL_stop="90010"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90766" e_stop="90010"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="90766" e_stop="90010" e_length="757"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90766" stop="90010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTCAAGAAAGCTTTCTTCCCCAACAATGCTGTTTATGAGATGAAGCGCAAACTCTGGGAGTTGAAGCAGACGGGAAGTATTAGGGCCTATGTGAAAGAGTTCACAATTTTGACCCTCCAGATTCCCCAACTCACGGAGGATGACATGCTGTTCACCTTCATGGACGGGCTGCAGAATTGGGCGAGGACCGAGTTAGAGCGGCGTCAAGTAAAAACCATCGATGAGGCCATCACTCAAGCCGAGACCTTGACAGATTTCAAACATGATCGTTTGGACAAGGCGAAGGGAAAGGAGGCAAAGGGCAGTCAAGCTAAAGGCGGGGGAGACCGTGGCCGAGGCAGAGAACCATCGGCACAACCCAAGCAGCAAGACACACTCAAGTCCGATGACAGACAGTTTGAACACCGGAAATTCTCGGAGAAGCGGACGCAGTCCAGCAGAGGAGACGGGTGCTATATATGTGGCGGACCACACGGTTACGCCAGGTGCCCAGAGATGAAGAGTCTTGATGCCATCGTCCGTGAGCGGAAGGAAAAGGAGGCACAAGACAAGGCGAAACCGGCAGACACCACTCAGTTGGGCATGGTTGGAATCTGTGGTGCCATAGCAAAGCAGGCTGACAACCCGGGGGATTTCAGCACACAATATGTGGATATCTCCATCAATGGGCAAGCAGTTCGGGCCATGGTAGATTCCGGGGCTGAAGCCAACATAATGACCAAGGCGGCGACAGAGAAATTGAGACTGAAAATTG</gDNA_template>
            <first_frame> E  F  K  K  A  F  F  P  N  N  A  V  Y  E  M  K  R  K  L  W  E  L  K  Q  T  G  S  I  R  A  Y  V  K  E  F  T  I  L  T  L  Q  I  P  Q  L  T  E  D  D  M  L  F  T  F  M  D  G  L  Q  N  W  A  R  T  E  L  E  R  R  Q  V  K  T  I  D  E  A  I  T  Q  A  E  T  L  T  D  F  K  H  D  R  L  D  K  A  K  G  K  E  A  K  G  S  Q  A  K  G  G  G  D  R  G  R  G  R  E  P  S  A  Q  P  K  Q  Q  D  T  L  K  S  D  D  R  Q  F  E  H  R  K  F  S  E  K  R  T  Q  S  S  R  G  D  G  C  Y  I  C  G  G  P  H  G  Y  A  R  C  P  E  M  K  S  L  D  A  I  V  R  E  R  K  E  K  E  A  Q  D  K  A  K  P  A  D  T  T  Q  L  G  M  V  G  I  C  G  A  I  A  K  Q  A  D  N  P  G  D  F  S  T  Q  Y  V  D  I  S  I  N  G  Q  A  V  R  A  M  V  D  S  G  A  E  A  N  I  M  T  K  A  A  T  E  K  L  R  L  K  I  </first_frame>
            <second_frame>  N  S  R  K  L  S  S  P  T  M  L  F  M  R  *  S  A  N  S  G  S  *  S  R  R  E  V  L  G  P  M  *  K  S  S  Q  F  *  P  S  R  F  P  N  S  R  R  M  T  C  C  S  P  S  W  T  G  C  R  I  G  R  G  P  S  *  S  G  V  K  *  K  P  S  M  R  P  S  L  K  P  R  P  *  Q  I  S  N  M  I  V  W  T  R  R  R  E  R  R  Q  R  A  V  K  L  K  A  G  E  T  V  A  E  A  E  N  H  R  H  N  P  S  S  K  T  H  S  S  P  M  T  D  S  L  N  T  G  N  S  R  R  S  G  R  S  P  A  E  E  T  G  A  I  Y  V  A  D  H  T  V  T  P  G  A  Q  R  *  R  V  L  M  P  S  S  V  S  G  R  K  R  R  H  K  T  R  R  N  R  Q  T  P  L  S  W  A  W  L  E  S  V  V  P  *  Q  S  R  L  T  T  R  G  I  S  A  H  N  M  W  I  S  P  S  M  G  K  Q  F  G  P  W  *  I  P  G  L  K  P  T  *  *  P  R  R  R  Q  R  N  *  D  *  K  L </second_frame>
            <third_frame>   I  Q  E  S  F  L  P  Q  Q  C  C  L  *  D  E  A  Q  T  L  G  V  E  A  D  G  K  Y  *  G  L  C  E  R  V  H  N  F  D  P  P  D  S  P  T  H  G  G  *  H  A  V  H  L  H  G  R  A  A  E  L  G  E  D  R  V  R  A  A  S  S  K  N  H  R  *  G  H  H  S  S  R  D  L  D  R  F  Q  T  *  S  F  G  Q  G  E  G  K  G  G  K  G  Q  S  S  *  R  R  G  R  P  W  P  R  Q  R  T  I  G  T  T  Q  A  A  R  H  T  Q  V  R  *  Q  T  V  *  T  P  E  I  L  G  E  A  D  A  V  Q  Q  R  R  R  V  L  Y  M  W  R  T  T  R  L  R  Q  V  P  R  D  E  E  S  *  C  H  R  P  *  A  E  G  K  G  G  T  R  Q  G  E  T  G  R  H  H  S  V  G  H  G  W  N  L  W  C  H  S  K  A  G  *  Q  P  G  G  F  Q  H  T  I  C  G  Y  L  H  Q  W  A  S  S  S  G  H  G  R  F  R  G  *  S  Q  H  N  D  Q  G  G  D  R  E  I  E  T  E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90766" stop="90011"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFKKAFFPNNAVYEMKRKLWELKQTGSIRAYVKEFTILTLQIPQLTEDDMLFTFMDGLQNWARTELERRQVKTIDEAITQAETLTDFKHDRLDKAKGKEAKGSQAKGGGDRGRGREPSAQPKQQDTLKSDDRQFEHRKFSEKRTQSSRGDGCYICGGPHGYARCPEMKSLDAIVRERKEKEAQDKAKPADTTQLGMVGICGAIAKQADNPGDFSTQYVDISINGQAVRAMVDSGAEANIMTKAATEKLRLKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="109942" PGL_stop="107297"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109942" e_stop="109835"/>
            <exon e_start="109751" e_stop="109659"/>
            <exon e_start="109553" e_stop="109452"/>
            <exon e_start="109004" e_stop="108903"/>
            <exon e_start="108794" e_stop="108669"/>
            <exon e_start="107623" e_stop="107297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.963"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.961"/>
          <exon-intron don_prob="0.698" acc_prob="0.000" e_score="0.980"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="0.984"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="109942" e_stop="109835" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="109834" i_stop="109752" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="109751" e_stop="109659" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109658" i_stop="109554" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.961">
            <gDNA_exon_boundary e_start="109553" e_stop="109452" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109451" i_stop="109005" i_length="447"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="109004" e_stop="108903" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.698" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108902" i_stop="108795" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="108794" e_stop="108669" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="108668" i_stop="107624" i_length="1045"/>
          </intron>
          <exon e_serial="6" e_score="0.951">
            <gDNA_exon_boundary e_start="107623" e_stop="107297" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109942" stop="109835"/>
              <exon start="109751" stop="109659"/>
              <exon start="109553" stop="109452"/>
              <exon start="109004" stop="108903"/>
              <exon start="108794" stop="108669"/>
              <exon start="107623" stop="107297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538343" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGATCCACCTAAAAGCAAAACTCAGATTATGGATAATGTTCCACCTGGAATTCCAAGAGATCAGTGGACTTATTATGTTAATTATCGTTATAAAAAAGAAACACAG : GAAATGTGCAACAGAAATGCTGAAAGTCGAAAGAAACAAATCATTCCACACACAGGTGGATCCAAAGCTAACTCTAGAAGAAGGGCTGAAATG : ATGGCTGAGACCGGTCAAATGCCTGGACGAGCAGAACTTTATCTTGCTACTCATAAGAATGTAGATGGAGCATATATAAATGAAGCAGCAAAAGTTATCTGT : GAAAAAATTCAGCAAACTATGAGTCAAAGCACTGTGGATGAGTCTATAATATCGCCAGATGATGCAGTTGGAAAAATTCTAGGAAAAGAGCACTCTGGAAGG : GAGAACTACAATAAATTGTTGAATTCTCACATTCAAATGATGGCTGCTTTCAAGTCATATATGATAATGAAAGAAGGGGCATTACCAAAACAATTTGTAGGGTTATTTGCTCCTACTACTACAATG : CCAGGTGATGTTAGTGATAGTAATCGTAGTGAACCCCGCTGAAGTTTCATGAACAACTGTAGATCCTTTCTTGAGTTTGGATGCTAGTGATCTAAAGTTTAAACAATTTTTTGTAGTGATTTGAAGTTCAAGTAAGTTTTTGTAGTGATTGAAAGTTTCTTGTAATAATATGGTTGAAGTGAATAACATGTTCCAATTAAGTTTGTAGAACTAATAGTACACTTTATGACATGCTTTTGTGGTGAACTATTGTGTTATTTCATATACTAATATGCCCTTTTATATTTGTCTATGTTAATTAATTAGTATTATTATTTAAATTTGAAT</gDNA_template>
            <first_frame> S  D  P  P  K  S  K  T  Q  I  M  D  N  V  P  P  G  I  P  R  D  Q  W  T  Y  Y  V  N  Y  R  Y  K  K  E  T  Q  :  E  M  C  N  R  N  A  E  S  R  K  K  Q  I  I  P  H  T  G  G  S  K  A  N  S  R  R  R  A  E  M  :  M  A  E  T  G  Q  M  P  G  R  A  E  L  Y  L  A  T  H  K  N  V  D  G  A  Y  I  N  E  A  A  K  V  I  C  :  E  K  I  Q  Q  T  M  S  Q  S  T  V  D  E  S  I  I  S  P  D  D  A  V  G  K  I  L  G  K  E  H  S  G  R  :  E  N  Y  N  K  L  L  N  S  H  I  Q  M  M  A  A  F  K  S  Y  M  I  M  K  E  G  A  L  P  K  Q  F  V  G  L  F  A  P  T  T  T  M  :  P  G  D  V  S  D  S  N  R  S  E  P  R  *  S  F  M  N  N  C  R  S  F  L  E  F  G  C  *  *  S  K  V  *  T  I  F  C  S  D  L  K  F  K  *  V  F  V  V  I  E  S  F  L  *  *  Y  G  *  S  E  *  H  V  P  I  K  F  V  E  L  I  V  H  F  M  T  C  F  C  G  E  L  L  C  Y  F  I  Y  *  Y  A  L  L  Y  L  S  M  L  I  N  *  Y  Y  Y  L  N  L  N </first_frame>
            <second_frame>  V  I  H  L  K  A  K  L  R  L  W  I  M  F  H  L  E  F  Q  E  I  S  G  L  I  M  L  I  I  V  I  K  K  K  H  R :   K  C  A  T  E  M  L  K  V  E  R  N  K  S  F  H  T  Q  V  D  P  K  L  T  L  E  E  G  L  K  * :   W  L  R  P  V  K  C  L  D  E  Q  N  F  I  L  L  L  I  R  M  *  M  E  H  I  *  M  K  Q  Q  K  L  S  V :   K  K  F  S  K  L  *  V  K  A  L  W  M  S  L  *  Y  R  Q  M  M  Q  L  E  K  F  *  E  K  S  T  L  E  G :   R  T  T  I  N  C  *  I  L  T  F  K  *  W  L  L  S  S  H  I  *  *  *  K  K  G  H  Y  Q  N  N  L  *  G  Y  L  L  L  L  L  Q  C :   Q  V  M  L  V  I  V  I  V  V  N  P  A  E  V  S  *  T  T  V  D  P  F  L  S  L  D  A  S  D  L  K  F  K  Q  F  F  V  V  I  *  S  S  S  K  F  L  *  *  L  K  V  S  C  N  N  M  V  E  V  N  N  M  F  Q  L  S  L  *  N  *  *  Y  T  L  *  H  A  F  V  V  N  Y  C  V  I  S  Y  T  N  M  P  F  Y  I  C  L  C  *  L  I  S  I  I  I  *  I  *   </second_frame>
            <third_frame>   *  S  T  *  K  Q  N  S  D  Y  G  *  C  S  T  W  N  S  K  R  S  V  D  L  L  C  *  L  S  L  *  K  R  N  T   : G  N  V  Q  Q  K  C  *  K  S  K  E  T  N  H  S  T  H  R  W  I  Q  S  *  L  *  K  K  G  *  N   : D  G  *  D  R  S  N  A  W  T  S  R  T  L  S  C  Y  S  *  E  C  R  W  S  I  Y  K  *  S  S  K  S  Y  L   : *  K  N  S  A  N  Y  E  S  K  H  C  G  *  V  Y  N  I  A  R  *  C  S  W  K  N  S  R  K  R  A  L  W  K   : G  E  L  Q  *  I  V  E  F  S  H  S  N  D  G  C  F  Q  V  I  Y  D  N  E  R  R  G  I  T  K  T  I  C  R  V  I  C  S  Y  Y  Y  N   : A  R  *  C  *  *  *  *  S  *  *  T  P  L  K  F  H  E  Q  L  *  I  L  S  *  V  W  M  L  V  I  *  S  L  N  N  F  L  *  *  F  E  V  Q  V  S  F  C  S  D  *  K  F  L  V  I  I  W  L  K  *  I  T  C  S  N  *  V  C  R  T  N  S  T  L  Y  D  M  L  L  W  *  T  I  V  L  F  H  I  L  I  C  P  F  I  F  V  Y  V  N  *  L  V  L  L  F  K  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109942" stop="109835"/>
                    <exon start="109751" stop="109659"/>
                    <exon start="109553" stop="109452"/>
                    <exon start="109004" stop="108903"/>
                    <exon start="108794" stop="108669"/>
                    <exon start="107623" stop="107582"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDPPKSKTQIMDNVPPGIPRDQWTYYVNYRYKKETQEMCNRNAESRKKQIIPHTGGSKANSRRRAEMMAETGQMPGRAELYLATHKNVDGAYINEAAKVICEKIQQTMSQSTVDESIISPDDAVGKILGKEHSGRENYNKLLNSHIQMMAAFKSYMIMKEGALPKQFVGLFAPTTTMPGDVSDSNRSEPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="111620" PGL_stop="110948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111620" e_stop="110948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="111620" e_stop="110948" e_length="673"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111620" stop="110948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111620" stop="110954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111619" stop="110954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGCCATATTATGGGAAGTTGGAAGATATTATTGAGCTTAACTATTATGGAAATTTCAGGGTTGTGCTTTTCAAATGCAAGTGGGCTGACACTACTCGAGATAGAGGCAAGCAGATTTGCCATATTATGGGAAGTTGGAAGAGATGTTTGGAACTTTAATTGTGTCAATTTTTCTAAATTGATTCACACCGGTGATCGTGAGGATGATGATCCTTACATTGAAGCATCACAAGCAAATATGGTTTTCTATGTTGATGATGAAACAGATAAAGAATGGAGTGTAGCTATACATTTACAACCAAGAGATGTGTTTGACATGGGACAAGTTGATAAAGAAGAGATATTTGAGAATGAGCCCTACCAACAACAAGAATTTGAAATTTTTTTCGATGTTGATTATGGAAATGTCCAAATCTCAACATAGGAGCATATGCCTGAACACACATAGCATGCTTTTTAGTTTTGGTGTAAAGGAAAAACTATTTGTATATGCTAATCACATCACTCTTTTATTAAGATTTGAACTTTTCATGTGTGTATGGATGTGGATACAAATTTCTTATGAAAATCTGCAGTCTTATAACTGGATGAACCAGTAATCTTTACAAGTATTGCAATAACAGTATTTTTTTAAAGAATTTCTGATTTATCTTATCTTTGGTTTATTGTAG</gDNA_template>
            <first_frame> I  C  H  I  M  G  S  W  K  I  L  L  S  L  T  I  M  E  I  S  G  L  C  F  S  N  A  S  G  L  T  L  L  E  I  E  A  S  R  F  A  I  L  W  E  V  G  R  D  V  W  N  F  N  C  V  N  F  S  K  L  I  H  T  G  D  R  E  D  D  D  P  Y  I  E  A  S  Q  A  N  M  V  F  Y  V  D  D  E  T  D  K  E  W  S  V  A  I  H  L  Q  P  R  D  V  F  D  M  G  Q  V  D  K  E  E  I  F  E  N  E  P  Y  Q  Q  Q  E  F  E  I  F  F  D  V  D  Y  G  N  V  Q  I  S  T  *  E  H  M  P  E  H  T  *  H  A  F  *  F  W  C  K  G  K  T  I  C  I  C  *  S  H  H  S  F  I  K  I  *  T  F  H  V  C  M  D  V  D  T  N  F  L  *  K  S  A  V  L  *  L  D  E  P  V  I  F  T  S  I  A  I  T  V  F  F  *  R  I  S  D  L  S  Y  L  W  F  I  V  </first_frame>
            <second_frame>  F  A  I  L  W  E  V  G  R  Y  Y  *  A  *  L  L  W  K  F  Q  G  C  A  F  Q  M  Q  V  G  *  H  Y  S  R  *  R  Q  A  D  L  P  Y  Y  G  K  L  E  E  M  F  G  T  L  I  V  S  I  F  L  N  *  F  T  P  V  I  V  R  M  M  I  L  T  L  K  H  H  K  Q  I  W  F  S  M  L  M  M  K  Q  I  K  N  G  V  *  L  Y  I  Y  N  Q  E  M  C  L  T  W  D  K  L  I  K  K  R  Y  L  R  M  S  P  T  N  N  K  N  L  K  F  F  S  M  L  I  M  E  M  S  K  S  Q  H  R  S  I  C  L  N  T  H  S  M  L  F  S  F  G  V  K  E  K  L  F  V  Y  A  N  H  I  T  L  L  L  R  F  E  L  F  M  C  V  W  M  W  I  Q  I  S  Y  E  N  L  Q  S  Y  N  W  M  N  Q  *  S  L  Q  V  L  Q  *  Q  Y  F  F  K  E  F  L  I  Y  L  I  F  G  L  L  * </second_frame>
            <third_frame>   L  P  Y  Y  G  K  L  E  D  I  I  E  L  N  Y  Y  G  N  F  R  V  V  L  F  K  C  K  W  A  D  T  T  R  D  R  G  K  Q  I  C  H  I  M  G  S  W  K  R  C  L  E  L  *  L  C  Q  F  F  *  I  D  S  H  R  *  S  *  G  *  *  S  L  H  *  S  I  T  S  K  Y  G  F  L  C  *  *  *  N  R  *  R  M  E  C  S  Y  T  F  T  T  K  R  C  V  *  H  G  T  S  *  *  R  R  D  I  *  E  *  A  L  P  T  T  R  I  *  N  F  F  R  C  *  L  W  K  C  P  N  L  N  I  G  A  Y  A  *  T  H  I  A  C  F  L  V  L  V  *  R  K  N  Y  L  Y  M  L  I  T  S  L  F  Y  *  D  L  N  F  S  C  V  Y  G  C  G  Y  K  F  L  M  K  I  C  S  L  I  T  G  *  T  S  N  L  Y  K  Y  C  N  N  S  I  F  L  K  N  F  *  F  I  L  S  L  V  Y  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111620" stop="111195"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICHIMGSWKILLSLTIMEISGLCFSNASGLTLLEIEASRFAILWEVGRDVWNFNCVNFSKLIHTGDREDDDPYIEASQANMVFYVDDETDKEWSVAIHLQPRDVFDMGQVDKEEIFENEPYQQQEFEIFFDVDYGNVQIST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="110972" PGL_stop="111620"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110972" e_stop="111620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="110972" e_stop="111620" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110972" stop="111620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110979" stop="111620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550450" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCAGAAATTCTTTAAAAAAATACTGTTATTGCAATACTTGTAAAGATTACTGGTTCATCCAGTTATAAGACTGCAGATTTTCATAAGAAATTTGTATCCACATCCATACACACATGAAAAGTTCAAATCTTAATAAAAGAGTGATGTGATTAGCATATACAAATAGTTTTTCCTTTACACCAAAACTAAAAAGCATGCTATGTGTGTTCAGGCATATGCTCCTATGTTGAGATTTGGACATTTCCATAATCAACATCGAAAAAAATTTCAAATTCTTGTTGTTGGTAGGGCTCATTCTCAAATATCTCTTCTTTATCAACTTGTCCCATGTCAAACACATCTCTTGGTTGTAAATGTATAGCTACACTCCATTCTTTATCTGTTTCATCATCAACATAGAAAACCATATTTGCTTGTGATGCTTCAATGTAAGGATCATCATCCTCACGATCACCGGTGTGAATCAATTTAGAAAAATTGACACAATTAAAGTTCCAAACATCTCTTCCAACTTCCCATAATATGGCAAATCTGCTTGCCTCTATCTCGAGTAGTGTCAGCCCACTTGCATTTGAAAAGCACAACCCTGAAATTTCCATAATAGTTAAGCTCAATAATATCTTCCAACTTCCCATAATATGGCAAAT</gDNA_template>
            <first_frame> N  Q  K  F  F  K  K  I  L  L  L  Q  Y  L  *  R  L  L  V  H  P  V  I  R  L  Q  I  F  I  R  N  L  Y  P  H  P  Y  T  H  E  K  F  K  S  *  *  K  S  D  V  I  S  I  Y  K  *  F  F  L  Y  T  K  T  K  K  H  A  M  C  V  Q  A  Y  A  P  M  L  R  F  G  H  F  H  N  Q  H  R  K  K  F  Q  I  L  V  V  G  R  A  H  S  Q  I  S  L  L  Y  Q  L  V  P  C  Q  T  H  L  L  V  V  N  V  *  L  H  S  I  L  Y  L  F  H  H  Q  H  R  K  P  Y  L  L  V  M  L  Q  C  K  D  H  H  P  H  D  H  R  C  E  S  I  *  K  N  *  H  N  *  S  S  K  H  L  F  Q  L  P  I  I  W  Q  I  C  L  P  L  S  R  V  V  S  A  H  L  H  L  K  S  T  T  L  K  F  P  *  *  L  S  S  I  I  S  S  N  F  P  *  Y  G  K  </first_frame>
            <second_frame>  I  R  N  S  L  K  K  Y  C  Y  C  N  T  C  K  D  Y  W  F  I  Q  L  *  D  C  R  F  S  *  E  I  C  I  H  I  H  T  H  M  K  S  S  N  L  N  K  R  V  M  *  L  A  Y  T  N  S  F  S  F  T  P  K  L  K  S  M  L  C  V  F  R  H  M  L  L  C  *  D  L  D  I  S  I  I  N  I  E  K  N  F  K  F  L  L  L  V  G  L  I  L  K  Y  L  F  F  I  N  L  S  H  V  K  H  I  S  W  L  *  M  Y  S  Y  T  P  F  F  I  C  F  I  I  N  I  E  N  H  I  C  L  *  C  F  N  V  R  I  I  I  L  T  I  T  G  V  N  Q  F  R  K  I  D  T  I  K  V  P  N  I  S  S  N  F  P  *  Y  G  K  S  A  C  L  Y  L  E  *  C  Q  P  T  C  I  *  K  A  Q  P  *  N  F  H  N  S  *  A  Q  *  Y  L  P  T  S  H  N  M  A  N </second_frame>
            <third_frame>   S  E  I  L  *  K  N  T  V  I  A  I  L  V  K  I  T  G  S  S  S  Y  K  T  A  D  F  H  K  K  F  V  S  T  S  I  H  T  *  K  V  Q  I  L  I  K  E  *  C  D  *  H  I  Q  I  V  F  P  L  H  Q  N  *  K  A  C  Y  V  C  S  G  I  C  S  Y  V  E  I  W  T  F  P  *  S  T  S  K  K  I  S  N  S  C  C  W  *  G  S  F  S  N  I  S  S  L  S  T  C  P  M  S  N  T  S  L  G  C  K  C  I  A  T  L  H  S  L  S  V  S  S  S  T  *  K  T  I  F  A  C  D  A  S  M  *  G  S  S  S  S  R  S  P  V  *  I  N  L  E  K  L  T  Q  L  K  F  Q  T  S  L  P  T  S  H  N  M  A  N  L  L  A  S  I  S  S  S  V  S  P  L  A  F  E  K  H  N  P  E  I  S  I  I  V  K  L  N  N  I  F  Q  L  P  I  I  W  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111140" stop="111334"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLYTKTKKHAMCVQAYAPMLRFGHFHNQHRKKFQILVVGRAHSQISLLYQLVPCQTHLLVVNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="117433" PGL_stop="118087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117433" e_stop="118087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="117433" e_stop="118087" e_length="655"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117433" stop="118087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGATTAACCAGGTCTTACTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCAGGAGTACAACATGCAGCTGCTGTGGCTCCCCTCATGGATGCCTCATTGGAAGCAGGCACGTTTCCTCGATTGACTACAGGGTCTATAATGACGAGTGATCAGCATGAAATTTTCACTACATTCTTAAAGTTGAAACCTCCAGTCTTCAAAGGTGTTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATACGGTGTTGAGTTTGTGACCTACCAGTTTCAGGGGAATGCCATAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCCGGACTTTGAGGGACAAGAGGAGAGATGAGTTCCTGAGCCTAGAGCAAGGCAGGATGTTTGTTACTGCTTGTGAGGCTAAATTTCGTGCACTATCGAGGTATGCCACCCAGCTTTACTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGTAGATCCCAGCCTTACAGATAGCT</gDNA_template>
            <first_frame> R  *  L  T  R  S  Y  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  S  R  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  S  R  H  V  S  S  I  D  Y  R  V  Y  N  D  E  *  S  A  *  N  F  H  Y  I  L  K  V  E  T  S  S  L  Q  R  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  A  T  *  D  G  H  S  R  T  I  R  C  *  V  C  D  L  P  V  S  G  E  C  H  N  V  V  A  V  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  G  I  I  L  *  L  I  Y  G  E  V  Y  T  P  D  F  E  G  Q  E  E  R  *  V  P  E  P  R  A  R  Q  D  V  C  Y  C  L  *  G  *  I  S  C  T  I  E  V  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  C  E  R  I  E  V  R  F  V  D  P  S  L  T  D  S  </first_frame>
            <second_frame>  D  D  *  P  G  L  T  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  G  V  Q  H  A  A  A  V  A  P  L  M  D  A  S  L  E  A  G  T  F  P  R  L  T  T  G  S  I  M  T  S  D  Q  H  E  I  F  T  T  F  L  K  L  K  P  P  V  F  K  G  V  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  D  I  V  E  R  Y  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  I  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  K  R  R  D  E  F  L  S  L  E  Q  G  R  M  F  V  T  A  C  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  Y  F  S  P  Q  E  R  I  H  R  F  V  K  G  L  R  S  D  L  *  I  P  A  L  Q  I  A </second_frame>
            <third_frame>   M  I  N  Q  V  L  L  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  E  Y  N  M  Q  L  L  W  L  P  S  W  M  P  H  W  K  Q  A  R  F  L  D  *  L  Q  G  L  *  *  R  V  I  S  M  K  F  S  L  H  S  *  S  *  N  L  Q  S  S  K  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  W  T  *  *  N  D  T  V  L  S  L  *  P  T  S  F  R  G  M  P  *  C  G  G  G  R  M  L  S  V  N  Q  H  R  H  H  L  *  L  G  H  H  S  L  A  Y  L  W  R  S  I  Y  P  G  L  *  G  T  R  G  E  M  S  S  *  A  *  S  K  A  G  C  L  L  L  L  V  R  L  N  F  V  H  Y  R  G  M  P  P  S  F  T  S  V  H  K  S  G  F  T  V  L  *  K  D  *  G  Q  I  C  R  S  Q  P  Y  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0141H05.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117443" stop="118066"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGLTYLSGLSDQGQTPPVFSAPAPQVPGVQHAAAVAPLMDASLEAGTFPRLTTGSIMTSDQHEIFTTFLKLKPPVFKGVESEDAYDFLVDCHELLHKMDIVERYGVEFVTYQFQGNAIMWWRSYVECQPAQAPPMTWASFSSLFMEKYIPRTLRDKRRDEFLSLEQGRMFVTACEAKFRALSRYATQLYFSPQERIHRFVKGLRSDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 206 chains have been computed
$ 
$ memory statistics:
$ 123352 bytes spliced alignments in total
$ 47 spliced alignments have been stored
$ 2624 bytes was the average size of a spliced alignment
$ 20640 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1587 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 248 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-07 19:45:43
-->
