<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-23 02:23:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E377455" ref_strand="+" ref_description="SGN-E377455 [TUS-20-B13]">
      <seq>ggactactgggcagcttatgatagaactggagaagtgcaaaaatttgctgatagaagtgcatctgatcaggcagcatctttgtttagtaaaggtggaatgggttcatccatcatattggacgtgaaagagaagccaatatatcaatatagatccagattgaatcaggccaccagctctgctgtgatggaccctgtgacactggtggagtcggaatgctctactgcacccaaaccaatgcatgaaaatttactaagaaaatctacgaccaagctgatatctgcaagtgttgatttctggatgggtactgaattgctctttacagacgtatcggatgctttagagctacttataaagcagttgaaaggccgtcaactcaccaaaagggagagaaagaaaatgaagagaacgctgggtgatatagctacccttgttcccataaccatcttaatgctaatccctgtttctgcagtgggtcatgcagcaatgctggcggcaatcaagaaatatgttccaagtttgattccttctccgttttcttctgaaaggcttgatctaatgaaacaattaaagagaacgaagaagaaagaagtccaagctcgaagcagcatagacaacccttcttctaaagttgtagagtgaatgcaagctgcgggaaacacccttattatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4151" stop="6261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4451" g_stop="4480" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4481" i_stop="4558" i_length="78">
            <donor d_prob="0.452" d_score="0.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4559" g_stop="4694" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="166" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4695" i_stop="4936" i_length="242">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4937" g_stop="5059" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="289" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5060" i_stop="5139" i_length="80">
            <donor d_prob="0.093" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5140" g_stop="5310" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="460" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5311" i_stop="5672" i_length="362">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5673" g_stop="5732" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="520" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5733" i_stop="5808" i_length="76">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5809" g_stop="5961" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="673" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E377455" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4451" e_stop="4480"/>
          <exon e_start="4559" e_stop="4694"/>
          <exon e_start="4937" e_stop="5059"/>
          <exon e_start="5140" e_stop="5310"/>
          <exon e_start="5673" e_stop="5732"/>
          <exon e_start="5809" e_stop="5961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTACTGGGCAGCTTATGATAGAACTGGGTATGTTGGATTTAATGACAAAATTTAATCTTCTGTTGCTGAACATTCCAATGATGAGTTGCCTATTCTCTTAAACAGAGAAGTGCAAAAATTTGCTGATAGAAGTGCATCTGATCAGGCAGCATCTTTGTTTAGTAAAGGTGGAATGGGTTCATCCATCATATTGGACGTGAAAGAGAAGCCAATATATCAATATAGATCCAGATTGAATCAGGTACAAGCACCAGATTTAATAAATAGGGACTGCTATACTGAGTTTATTCTTTAGTGAATCACTCTTGGTTCAAAATGTCTCGATATCGACTGTCTGTCAAGAAAATGCATCTCTAGGCATAGTTGAAAGTTCTTACTTCATTGATAAAAAATGATCATCTAATATTTGTGTACAACCTCTTAACTCGGCACTCAGTTTCTGAAACCCTTTATAGAGTGGTAATTTCTTTTATCAAATCACAGGCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTTGTAAGTTATTATCCAGTTATTCAATCATATCAAAAGAGTTTGCCCTATAGTAGTTAATTTGTTATTGCAATATGCTATAGGATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCTGTAAGGATCAACTATATTAAACAGCAGACTTTCGTTCCTTCTGCTCAAATCTTATATTCTCTGCTGAATTAACTTGTCTTCTGGTCAATTTCATGCTCTATGCTAGAAATGTTTTAGTACCTATAGAACTTAGATGCCGAGGTTGAAAGGACTACAAAGTAAGCAGGCTAAATTCTTCTTTTAAGGAAATGATCCGGAAAATGTGCCATGTCTACCCTGGTTTTCAAGATTACCAAAAAAAGTTAAAAATTGACGCTCGTTTCCACGAAATTGTACTAATGGTTTCACAATGTCAATGTGAATTTTTTTTTCCCGTATTGATGAAAGAGCTTCTCAAAGATTCACTGTGTTAAATTTATCAGGTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTGGTAATTAACTGTAATCTATCATTCTATACATTATTCCATCCTGTCATTTGCTTATATGTTAATCATTGTGGCCCAGATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATG</genome_strand>
        <mrna_strand>GGACTACTGGGCAGCTTATGATAGAACTGG..............................................................................AGAAGTGCAAAAATTTGCTGATAGAAGTGCATCTGATCAGGCAGCATCTTTGTTTAGTAAAGGTGGAATGGGTTCATCCATCATATTGGACGTGAAAGAGAAGCCAATATATCAATATAGATCCAGATTGAATCAG..................................................................................................................................................................................................................................................GCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTT................................................................................GATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCT..........................................................................................................................................................................................................................................................................................................................................................................GTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTG............................................................................ATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACACCCTTATTATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E233177" ref_strand="+" ref_description="SGN-E233177 [cLED-6-F7]">
      <seq>ggactactgggcagcttatgatagaactggagaagtgcaaaaatttgctgatagaagtgcatctgatcaggcagcatctttgtttagtaaaggtggaatgggttcatccatcatattggacgtgaaagagaagccaatatatcaatatagatccagattgaatcaggccaccagctctgctgtgatggaccctgtgacactggtggagtcggaatgctctactgcacccaaaccaatgcatgaaaatttactaagaaaatctacgaccaagctgatatctgcaagtgttgatttctggatgggtactgaattgctctttacagacgtatcggatgctttagagctacttataaagcagttgaaaggccgtcaactcaccaaaagggagagaaagaaaatgaagagaacgctgggtgatatagctacccttgttcccataaccatcttaatgctaatccctgtttctgcagtgggtcatgcagcaatgctggcggcaatcaagaaatatgttccaagtttgattccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4151" stop="6034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4451" g_stop="4480" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4481" i_stop="4558" i_length="78">
            <donor d_prob="0.452" d_score="0.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4559" g_stop="4694" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="166" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4695" i_stop="4936" i_length="242">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4937" g_stop="5059" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="289" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5060" i_stop="5139" i_length="80">
            <donor d_prob="0.093" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5140" g_stop="5310" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="460" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5311" i_stop="5672" i_length="362">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5673" g_stop="5732" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="520" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5733" i_stop="5808" i_length="76">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5809" g_stop="5816" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="528" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E233177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4451" e_stop="4480"/>
          <exon e_start="4559" e_stop="4694"/>
          <exon e_start="4937" e_stop="5059"/>
          <exon e_start="5140" e_stop="5310"/>
          <exon e_start="5673" e_stop="5732"/>
          <exon e_start="5809" e_stop="5816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTACTGGGCAGCTTATGATAGAACTGGGTATGTTGGATTTAATGACAAAATTTAATCTTCTGTTGCTGAACATTCCAATGATGAGTTGCCTATTCTCTTAAACAGAGAAGTGCAAAAATTTGCTGATAGAAGTGCATCTGATCAGGCAGCATCTTTGTTTAGTAAAGGTGGAATGGGTTCATCCATCATATTGGACGTGAAAGAGAAGCCAATATATCAATATAGATCCAGATTGAATCAGGTACAAGCACCAGATTTAATAAATAGGGACTGCTATACTGAGTTTATTCTTTAGTGAATCACTCTTGGTTCAAAATGTCTCGATATCGACTGTCTGTCAAGAAAATGCATCTCTAGGCATAGTTGAAAGTTCTTACTTCATTGATAAAAAATGATCATCTAATATTTGTGTACAACCTCTTAACTCGGCACTCAGTTTCTGAAACCCTTTATAGAGTGGTAATTTCTTTTATCAAATCACAGGCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTTGTAAGTTATTATCCAGTTATTCAATCATATCAAAAGAGTTTGCCCTATAGTAGTTAATTTGTTATTGCAATATGCTATAGGATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCTGTAAGGATCAACTATATTAAACAGCAGACTTTCGTTCCTTCTGCTCAAATCTTATATTCTCTGCTGAATTAACTTGTCTTCTGGTCAATTTCATGCTCTATGCTAGAAATGTTTTAGTACCTATAGAACTTAGATGCCGAGGTTGAAAGGACTACAAAGTAAGCAGGCTAAATTCTTCTTTTAAGGAAATGATCCGGAAAATGTGCCATGTCTACCCTGGTTTTCAAGATTACCAAAAAAAGTTAAAAATTGACGCTCGTTTCCACGAAATTGTACTAATGGTTTCACAATGTCAATGTGAATTTTTTTTTCCCGTATTGATGAAAGAGCTTCTCAAAGATTCACTGTGTTAAATTTATCAGGTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTGGTAATTAACTGTAATCTATCATTCTATACATTATTCCATCCTGTCATTTGCTTATATGTTAATCATTGTGGCCCAGATTCCTTC</genome_strand>
        <mrna_strand>GGACTACTGGGCAGCTTATGATAGAACTGG..............................................................................AGAAGTGCAAAAATTTGCTGATAGAAGTGCATCTGATCAGGCAGCATCTTTGTTTAGTAAAGGTGGAATGGGTTCATCCATCATATTGGACGTGAAAGAGAAGCCAATATATCAATATAGATCCAGATTGAATCAG..................................................................................................................................................................................................................................................GCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTT................................................................................GATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCT..........................................................................................................................................................................................................................................................................................................................................................................GTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTG............................................................................ATTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E270908" ref_strand="+" ref_description="SGN-E270908 [cLEM-6-P7]">
      <seq>gccaccagctctgctgtgatggaccctgtgacactggtggagtcggaatgctctactgcacccaaaccaatgcatgaaaatttactaagaaaatctacgaccaagctgatatctgcaagtgttgatttctggatgggtactgaattgctctttacagacgtatcggatgctttagagctacttataaagcagttgaaaggccgtcaactcaccaaaagggagagaaagaaaatgaagagaacgctgggtgatatagctacccttgttcccataaccatcttaatgctaatccctgtttctgcagtgggtcatgcagcaatgctggcggcaatcaagaaatatgttccaagtttgattccttctccgttttcttctgaaaggcttgatctaatgaaacaattaaagagaacgaagaagaaagaagtccaagctcgaagcagcatagacaacccttcttctaaagttgtagagtgaatgcaagctgcgggaaacaaccttattatcatggtgttggtgcagcttaacttctgtagagtggcaagaggcgttgcacatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4637" stop="6313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4937" g_stop="5059" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5060" i_stop="5139" i_length="80">
            <donor d_prob="0.093" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5140" g_stop="5310" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="294" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5311" i_stop="5672" i_length="362">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5673" g_stop="5732" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="354" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5733" i_stop="5808" i_length="76">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5809" g_stop="6013" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="559" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E270908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4937" e_stop="5059"/>
          <exon e_start="5140" e_stop="5310"/>
          <exon e_start="5673" e_stop="5732"/>
          <exon e_start="5809" e_stop="6013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTTGTAAGTTATTATCCAGTTATTCAATCATATCAAAAGAGTTTGCCCTATAGTAGTTAATTTGTTATTGCAATATGCTATAGGATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCTGTAAGGATCAACTATATTAAACAGCAGACTTTCGTTCCTTCTGCTCAAATCTTATATTCTCTGCTGAATTAACTTGTCTTCTGGTCAATTTCATGCTCTATGCTAGAAATGTTTTAGTACCTATAGAACTTAGATGCCGAGGTTGAAAGGACTACAAAGTAAGCAGGCTAAATTCTTCTTTTAAGGAAATGATCCGGAAAATGTGCCATGTCTACCCTGGTTTTCAAGATTACCAAAAAAAGTTAAAAATTGACGCTCGTTTCCACGAAATTGTACTAATGGTTTCACAATGTCAATGTGAATTTTTTTTTCCCGTATTGATGAAAGAGCTTCTCAAAGATTCACTGTGTTAAATTTATCAGGTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTGGTAATTAACTGTAATCTATCATTCTATACATTATTCCATCCTGTCATTTGCTTATATGTTAATCATTGTGGCCCAGATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATGGTGTTGGTGCAGCTTAACTTCTGTAGAGTGGCAAGAGGCGTTGCACATATAC</genome_strand>
        <mrna_strand>GCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTT................................................................................GATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCT..........................................................................................................................................................................................................................................................................................................................................................................GTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTG............................................................................ATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATGGTGTTGGTGCAGCTTAACTTCTGTAGAGTGGCAAGAGGCGTTGCACATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E270909" ref_strand="+" ref_description="SGN-E270909 [cLEM-6-P9]">
      <seq>gccaccagctctgctgtgatggaccctgtgacactggtggagtcggaatgctctactgcacccaaaccaatgcatgaaaatttactaagaaaatctacgaccaagctgatatctgcaagtgttgatttctggatgggtactgaattgctctttacagacgtatcggatgctttagagctacttataaagcagttgaaaggccgtcaactcaccaaaagggagagaaagaaaatgaagagaacgctgggtgatatagctacccttgttcccataaccatcttaatgctaatccctgtttctgcagtgggtcatgcagcaatgctggcggcaatcaagaaatatgttccaagtttgattccttctccgttttcttctgaaaggcttgatctaatgaaacaattaaagagaacgaagaagaaagaagtccaagctcgaagcagcatagacaacccttcttctaaagttgtagagtgaatgcaagctgcgggaaacaaccttattatcatggtgttggtgcagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4637" stop="6276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4937" g_stop="5059" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5060" i_stop="5139" i_length="80">
            <donor d_prob="0.093" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5140" g_stop="5310" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="294" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5311" i_stop="5672" i_length="362">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5673" g_stop="5732" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="354" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5733" i_stop="5808" i_length="76">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5809" g_stop="5976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="522" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E270909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4937" e_stop="5059"/>
          <exon e_start="5140" e_stop="5310"/>
          <exon e_start="5673" e_stop="5732"/>
          <exon e_start="5809" e_stop="5976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTTGTAAGTTATTATCCAGTTATTCAATCATATCAAAAGAGTTTGCCCTATAGTAGTTAATTTGTTATTGCAATATGCTATAGGATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCTGTAAGGATCAACTATATTAAACAGCAGACTTTCGTTCCTTCTGCTCAAATCTTATATTCTCTGCTGAATTAACTTGTCTTCTGGTCAATTTCATGCTCTATGCTAGAAATGTTTTAGTACCTATAGAACTTAGATGCCGAGGTTGAAAGGACTACAAAGTAAGCAGGCTAAATTCTTCTTTTAAGGAAATGATCCGGAAAATGTGCCATGTCTACCCTGGTTTTCAAGATTACCAAAAAAAGTTAAAAATTGACGCTCGTTTCCACGAAATTGTACTAATGGTTTCACAATGTCAATGTGAATTTTTTTTTCCCGTATTGATGAAAGAGCTTCTCAAAGATTCACTGTGTTAAATTTATCAGGTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTGGTAATTAACTGTAATCTATCATTCTATACATTATTCCATCCTGTCATTTGCTTATATGTTAATCATTGTGGCCCAGATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATGGTGTTGGTGCAGCTT</genome_strand>
        <mrna_strand>GCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTT................................................................................GATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCT..........................................................................................................................................................................................................................................................................................................................................................................GTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTG............................................................................ATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATGGTGTTGGTGCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E377454" ref_strand="-" ref_description="SGN-E377454 [TUS-20-B13]">
      <seq>ggtgatatagctacccctgttcccataaccatcttaatgctaatccctgtttctgcagtgggtcatgcagcaatgctggcggcaatcaaaaaatatgttccaagtttgattccttctccgttttcttctgaaaggcttgatctaatgaaacaattaaagagaacgaagaagaaagaagtccaagctcgaagcagcatagacaacccttcttctaaagttgtagagtgaatgcaagctgcgggaaacaaccttattatcatggtgttggtgcagcttaacttctgtagagtggcaaaaggcgttgcacatataccttataatagccaatgcaagaaactatcagtaagaggaaacagaaacaacgctttttcacaagcacatgtacacacagatcctgctaaatttagttctaaagaaagcaactttgtttttgatcaactgtattttctttaggcgtcatctgacaattgttcatatttatccatggtttaaaacgaagctttcgagttcctaaatttctaattcttgcaatcatctgactatttttcatatttgtacagtgtatacttatgagctcttagtagcattttctttttactgaggagcaggtggatgtttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4963" stop="6634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5263" g_stop="5310" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5311" i_stop="5672" i_length="362">
            <donor d_prob="0.741" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5673" g_stop="5732" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="108" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5733" i_stop="5808" i_length="76">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5809" g_stop="6323" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="623" r_length="515" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="624" polyA_stop="642"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E377454" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377454" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5263" e_stop="5310"/>
          <exon e_start="5673" e_stop="5732"/>
          <exon e_start="5809" e_stop="6323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCTGTAAGGATCAACTATATTAAACAGCAGACTTTCGTTCCTTCTGCTCAAATCTTATATTCTCTGCTGAATTAACTTGTCTTCTGGTCAATTTCATGCTCTATGCTAGAAATGTTTTAGTACCTATAGAACTTAGATGCCGAGGTTGAAAGGACTACAAAGTAAGCAGGCTAAATTCTTCTTTTAAGGAAATGATCCGGAAAATGTGCCATGTCTACCCTGGTTTTCAAGATTACCAAAAAAAGTTAAAAATTGACGCTCGTTTCCACGAAATTGTACTAATGGTTTCACAATGTCAATGTGAATTTTTTTTTCCCGTATTGATGAAAGAGCTTCTCAAAGATTCACTGTGTTAAATTTATCAGGTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTGGTAATTAACTGTAATCTATCATTCTATACATTATTCCATCCTGTCATTTGCTTATATGTTAATCATTGTGGCCCAGATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATGGTGTTGGTGCAGCTTAACTTCTGTAGAGTGGCAAGAGGCGTTGCACATATACCTTATAATAGCCAATGCAAGAAACTATCAGTAAGAGGAAACAGAAACAACGCTTTTTCACAAGCACATGTACACACAGATCCTGCTAAATTTAGTTCTAGAGAAAGCAACTTTGTTTTTGATCAACTGTATTTTCTCTAGGCGTCATCTGACAATTGTTCATATTTATCCATGGTTTAAAACGAAGCTTTCGAGTTCCTAAATTTCTAATTCTTGCAATCATCTGACTATTTTTCATATTTGTACAGTGTATACTTATGAGCTCTTAGTAGCATTTTCTTTTTACTGAGGAGCAGGTGGATGTTTTTAAA</genome_strand>
        <mrna_strand>GGTGATATAGCTACCCCTGTTCCCATAACCATCTTAATGCTAATCCCT..........................................................................................................................................................................................................................................................................................................................................................................GTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAAAAATATGTTCCAAGTTTG............................................................................ATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATGGTGTTGGTGCAGCTTAACTTCTGTAGAGTGGCAAAAGGCGTTGCACATATACCTTATAATAGCCAATGCAAGAAACTATCAGTAAGAGGAAACAGAAACAACGCTTTTTCACAAGCACATGTACACACAGATCCTGCTAAATTTAGTTCTAAAGAAAGCAACTTTGTTTTTGATCAACTGTATTTTCTTTAGGCGTCATCTGACAATTGTTCATATTTATCCATGGTTTAAAACGAAGCTTTCGAGTTCCTAAATTTCTAATTCTTGCAATCATCTGACTATTTTTCATATTTGTACAGTGTATACTTATGAGCTCTTAGTAGCATTTTCTTTTTACTGAGGAGCAGGTGGATGTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E545679" ref_strand="+" ref_description="SGN-E545679 [TUS-68-K11]">
      <seq>gtttattgcagcgtttaattaattttagtctcaaaatgccttgtatagcttaggacgttttgacgattcgctcaattgtgggtctattaaggcctatcttgctgaatttatctccaccttgcttttcgtcttcgccggtgttggttctgccattgcctacaataagttgacagcagatgctgctcttgatcctgccggactagttgcggtagcagtttgccatggatttgctctcttcgtggccgtttctattggtgctaacatctccggtggtcacgttaatcccgctgttacttttggtttagctcttggaggccaaattacccttctcaccggcctgttttactgggtggctcagcttttgggcgccatagttgcttgctgcctcctcaagtttgttaccggaggattgactgttccaatccacggtgtggcagctggtgtaggagctactgaaggagttgtaatggaaattatcatcacattcgcgttggtgtacactgtgtacgccacagcagctgaccccaagaagggatcattgggtacaattgcacctattgccattggtttcattgttggtgctaacattttggctgcgggcccattctccggaggttcaatgaatccagcccgttcttttggggcctgcagttgttagtggcaacttcgctggtaactggattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="9256" stop="7490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8956" g_stop="8796" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8795" i_stop="8450" i_length="346">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8449" g_stop="8199" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="412" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8198" i_stop="8062" i_length="137">
            <donor d_prob="0.801" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8061" g_stop="7790" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="685" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E545679" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8956" e_stop="8796"/>
          <exon e_start="8449" e_stop="8199"/>
          <exon e_start="8061" e_stop="7790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTGCAGCGTTTAATTAATTTTAGTCTCAAAATGCCTTGTATAGCTTAGGACGTTTTGACGATTCGCTCAATTGTGGGTCTATTAAGGCCTATCTTGCTGAATTTATCTCCACCTTGCTTTTCGTCTTCGCCGGTGTTGGTTCTGCCATTGCCTACAGTTAATAACTACTCCTTCTTTTTTATATTTTTTCGTCCACTTTTGTTATTTGCCATGTTGCGTTTTCAATACTCAATTTGATTAATTTTTACAGATAAATTAAATTTTATTAGTTTGATATTCAAAAATTATTCGAAAAGTATTATAAATTGTAATTTTTTGCATATCAATATCATGAAAAAAATATATTCTGAGCTGTTGGACAAATTTTTTTTTTATAGTTTCGCACTGGAAAAGGAAACTATAACAATTAAAGTAGACGAAGATAGTAATTTTCGGCACCAATTTCCATGCAACGTAACGCTATTGAACCAAAGTAGCTGATAGATGATTAATTATTCTGCAGATAAGTTGACAGCAGATGCTGCTCTTGATCCTGCCGGACTAGTTGCGGTAGCAGTTTGCCATGGATTTGCTCTCTTCGTGGCCGTTTCTATTGGTGCTAACATCTCCGGTGGTCACGTTAATCCCGCTGTTACTTTTGGTTTAGCTCTTGGAGGCCAAATTACCCTTCTCACCGGCCTGTTTTACTGGGTGGCTCAGCTTTTGGGCGCCATAGTTGCTTGCTGCCTCCTCAAGTTTGTTACCGGAGGATTGGTAATTAGTTTTCAAATTATGACTTAGTTAGAATTGTGATAACCGATTCCAACTTGTTTGAAACTGAAGCCGTAATTATATATTAAAATTGAATTCAAAAATATCTAAATTTTTTTTATGGTTTTATTTCTACGCAGACTGTTCCAATCCACGGTGTGGCAGCTGGTGTAGGAGCTACTGAAGGAGTTGTAATGGAAATTATCATCACATTCGCGTTGGTGTACACTGTGTACGCCACAGCAGCTGACCCCAAGAAGGGATCATTGGGTACAATTGCACCTATTGCCATTGGTTTCATTGTTGGTGCTAACATTTTGGCTGCGGGCCCATTCTCCGGAGGTTCAATGAATCCAGCCCGTTCTTTT-GGGCCTGCAGTTGTTAGTGGCAACTTCGCTGGTAACTGGATTTA</genome_strand>
        <mrna_strand>GTTTATTGCAGCGTTTAATTAATTTTAGTCTCAAAATGCCTTGTATAGCTTAGGACGTTTTGACGATTCGCTCAATTGTGGGTCTATTAAGGCCTATCTTGCTGAATTTATCTCCACCTTGCTTTTCGTCTTCGCCGGTGTTGGTTCTGCCATTGCCTACA..........................................................................................................................................................................................................................................................................................................................................................ATAAGTTGACAGCAGATGCTGCTCTTGATCCTGCCGGACTAGTTGCGGTAGCAGTTTGCCATGGATTTGCTCTCTTCGTGGCCGTTTCTATTGGTGCTAACATCTCCGGTGGTCACGTTAATCCCGCTGTTACTTTTGGTTTAGCTCTTGGAGGCCAAATTACCCTTCTCACCGGCCTGTTTTACTGGGTGGCTCAGCTTTTGGGCGCCATAGTTGCTTGCTGCCTCCTCAAGTTTGTTACCGGAGGATTG.........................................................................................................................................ACTGTTCCAATCCACGGTGTGGCAGCTGGTGTAGGAGCTACTGAAGGAGTTGTAATGGAAATTATCATCACATTCGCGTTGGTGTACACTGTGTACGCCACAGCAGCTGACCCCAAGAAGGGATCATTGGGTACAATTGCACCTATTGCCATTGGTTTCATTGTTGGTGCTAACATTTTGGCTGCGGGCCCATTCTCCGGAGGTTCAATGAATCCAGCCCGTTCTTTTGGGGCCTGCAGTTGTTAGTGGCAACTTCGCTGGTAACTGGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E310525" ref_strand="+" ref_description="SGN-E310525 [cLEZ-19-I13]">
      <seq>tttattgcagcgtttaattaattttagtctcaaaatgccttgtatagcttaggacgttttgacgattcgctcaattgtgggtctattaaggcctatcttgctgaatttatctccaccttgcttttcgtcttcgccggtgttggttctgccattgcctacaataagttgacagcagatgctgctcttgatcctgccggactagttgcggtagcagtttgccatggatttgctctcttcgtggccgtttctattggtgctaacatctccggtggtcacgttaatcccgctgttacttttggtttagctcttggaggccaaattacccttctcaccggcctgttttactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="9255" stop="7962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8955" g_stop="8796" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8795" i_stop="8450" i_length="346">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8449" g_stop="8262" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="348" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E310525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8955" e_stop="8796"/>
          <exon e_start="8449" e_stop="8262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGCAGCGTTTAATTAATTTTAGTCTCAAAATGCCTTGTATAGCTTAGGACGTTTTGACGATTCGCTCAATTGTGGGTCTATTAAGGCCTATCTTGCTGAATTTATCTCCACCTTGCTTTTCGTCTTCGCCGGTGTTGGTTCTGCCATTGCCTACAGTTAATAACTACTCCTTCTTTTTTATATTTTTTCGTCCACTTTTGTTATTTGCCATGTTGCGTTTTCAATACTCAATTTGATTAATTTTTACAGATAAATTAAATTTTATTAGTTTGATATTCAAAAATTATTCGAAAAGTATTATAAATTGTAATTTTTTGCATATCAATATCATGAAAAAAATATATTCTGAGCTGTTGGACAAATTTTTTTTTTATAGTTTCGCACTGGAAAAGGAAACTATAACAATTAAAGTAGACGAAGATAGTAATTTTCGGCACCAATTTCCATGCAACGTAACGCTATTGAACCAAAGTAGCTGATAGATGATTAATTATTCTGCAGATAAGTTGACAGCAGATGCTGCTCTTGATCCTGCCGGACTAGTTGCGGTAGCAGTTTGCCATGGATTTGCTCTCTTCGTGGCCGTTTCTATTGGTGCTAACATCTCCGGTGGTCACGTTAATCCCGCTGTTACTTTTGGTTTAGCTCTTGGAGGCCAAATTACCCTTCTCACCGGCCTGTTTTACTGG</genome_strand>
        <mrna_strand>TTTATTGCAGCGTTTAATTAATTTTAGTCTCAAAATGCCTTGTATAGCTTAGGACGTTTTGACGATTCGCTCAATTGTGGGTCTATTAAGGCCTATCTTGCTGAATTTATCTCCACCTTGCTTTTCGTCTTCGCCGGTGTTGGTTCTGCCATTGCCTACA..........................................................................................................................................................................................................................................................................................................................................................ATAAGTTGACAGCAGATGCTGCTCTTGATCCTGCCGGACTAGTTGCGGTAGCAGTTTGCCATGGATTTGCTCTCTTCGTGGCCGTTTCTATTGGTGCTAACATCTCCGGTGGTCACGTTAATCCCGCTGTTACTTTTGGTTTAGCTCTTGGAGGCCAAATTACCCTTCTCACCGGCCTGTTTTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E344558" ref_strand="+" ref_description="SGN-E344558 [cTOF-14-E5]">
      <seq>ttgtgtctcaaatttgtctgcgtggtcaagtcagtgctgaactgaaaagattgctcaccggggttccggtacgcaatcgccgccggcgaccaccaatttcttcatcgcatatcccactatagttaaaattcattgaattatctagtacggccgagatatggacagacaaaacctagcttcatcctccgctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgaacgtgcaagtgagattagaggaaaagtgaggactggattagagggaccaggacttactgttgctcaaaagatatggtactgtgttgcaacagttggtggtcaatatatatgggnctcgtctacaatcattttctgcttttcggagatggggtgactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="12453" stop="15502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12753" g_stop="13050" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13852" g_stop="13965" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="412" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14072" g_stop="14225" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="566" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14226" i_stop="15070" i_length="845">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15071" g_stop="15202" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="699" r_length="133" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E344558" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12753" e_stop="13050"/>
          <exon e_start="13852" e_stop="13965"/>
          <exon e_start="14072" e_stop="14225"/>
          <exon e_start="15071" e_stop="15202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTCTCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAGGTTAGAAAAACATCATTGCTTAATCTTGTTGCTCCTTTTCTGTAAGTAGCTTGTATCAACCTTTTTTGTATCTCAGTGATGTTAGAAATTAAATTTGTTATATTGTGTTGCAAGCTATGCATCGATGAGATGGTTCTAGATTCTACTTTAGGGATTAATTTTAGACTTGCTATAGAATTTGAAACTTCACAGTCTCTAGTAGCTCAGCTGATCTATTAATAATTAAAAAGATTAAGACCAAAGTATCTAGAAACGCAAAAGATAAAGATAAAAAGGATTATAAAACAGTAATTCGAGATTAGTTGCCAACTACTTTCAGAAAAACAATGTATTGGAGCAGACAAAGGAAGATCATCAAAAATATGTCAATGTGAGGAGGTGACTTATTTGCCCAAAAAATGGCTTACTAAAGAAAGCATAAGAAGAACGAGTACAAAGTACAACCATCTTCTTCAGTTTGTAATGGAGGGACCATTGGAATTGACTTGTAAAATCTCTTTGGTCTTACTTTGTGTTTGTGTTTGAAATGAAGAGGTTGGCAGCTTGATTTAATTATTTTTGATATGGTAAAAATGTTTAAGGTTGGCAGCTTGATGTAATCACATTTCTTGTTTCTTGCATTAACTGCAATAATTTCAGTTGTAGTCTTATAGTTTGTTAAGTCTAAATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGG-CTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTG</genome_strand>
        <mrna_strand>TTGTGTCTCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGNCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E273568" ref_strand="+" ref_description="SGN-E273568 [cLEN-6-D18]">
      <seq>tcaaatttgtctgcgtggtcaagtcagtgctgaactgaaaagattgctcaccggggttccggtacgcaatcgccgccggcgaccaccaatttgttcatcgcatatcccactatagttaaaattcattggattatctagtacggccgagatatggacagacaaaacctagcttcatcctccgctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagccattccaatatcaatatccagagttaatcacgtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagatggttaaggtctgttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="12460" stop="14444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12760" g_stop="13050" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13051" i_stop="13855" i_length="805">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.178" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13856" g_stop="13965" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="401" r_length="110" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14072" g_stop="14144" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="474" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E273568" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12760" e_stop="13050"/>
          <exon e_start="13856" e_stop="13965"/>
          <exon e_start="14072" e_stop="14144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCT</genome_strand>
        <mrna_strand>TCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTGTTCATCGCATATCCCACTATAGTTAAAATTCATTGGATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTCCAATATCAATATCCAGAGTTAATCACGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGATGGTTAAGGTCTGTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E274503" ref_strand="+" ref_description="SGN-E274503 [cLEN-11-F7]">
      <seq>aaatttgtctgcgtggtcaagtcagtgctgaactgaaaagattgctcaccggggttccggtacgcaatcgccgccggcgaccaccaatttcttcatcgcatatcccactatagttaaaattcattgaattatctagtacggccgagatatggacagacaaaacctagcttcatcctccgctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="12462" stop="14502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12762" g_stop="13050" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13852" g_stop="13965" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="403" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14072" g_stop="14202" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="534" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E274503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12762" e_stop="13050"/>
          <exon e_start="13852" e_stop="13965"/>
          <exon e_start="14072" e_stop="14202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACG</genome_strand>
        <mrna_strand>AAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E439921" ref_strand="+" ref_description="SGN-E439921 [cSTA-14-K1]">
      <seq>cgtggtcaagtcagtgctgaactgaaaagattgctcaccggggttccggtacgcaatcgccgccggcgaccaccaatttcttcatcgcatatcccactatagttaaaattcattgaattatctagtacggccgagatatggacagacaaaacctagcttcatcctccgctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgaacgtgcaagtgagattagaggaaaagtgaggactggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="12473" stop="14532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12773" g_stop="13050" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13852" g_stop="13965" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="392" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14072" g_stop="14225" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="546" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E439921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12773" e_stop="13050"/>
          <exon e_start="13852" e_stop="13965"/>
          <exon e_start="14072" e_stop="14225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG</genome_strand>
        <mrna_strand>CGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E445758" ref_strand="+" ref_description="SGN-E445758 [cSTA-18-B5]">
      <seq>gtcaagtcagtgctgaactgaaaagattgctcaccgggctccggtacgcaatcgctgccggcgaccaccaatttcttcatcgcatatcccactatagttagaattcattgaattacctagtacggccgagatatggacagacaaaacctatcgtcatcgtccgctccccgtggtggtgccactgtccatcctcccccacaacacgatgcttggatcaatacctaccggaatttgcatcctcagtggcagtctcttctttctccaccgcaccagtcagccattccaatatcaatatccagagttaatcaagtagatgctggaagactggacattgaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="12477" stop="14218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12777" g_stop="13050" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13852" g_stop="13918" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="340" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E445758" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12777" e_stop="13050"/>
          <exon e_start="13852" e_stop="13918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGT</genome_strand>
        <mrna_strand>GTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACC-GGGCTCCGGTACGCAATCGCTGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAGAATTCATTGAATTACCTAGTACGGCCGAGATATGGACAGACAAAACCTATCGTCATCGTCCGCTCCCCGTGGTGGTGCCACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACCTACCGGAATTTGCATCCTCAGTGGCAGTCTCTTCTTTCTCCACCGCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAAGTAGATGCTGGAAGACTGGACATTGAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E457857" ref_strand="+" ref_description="SGN-E457857 [cPRO-3-N12]">
      <seq>ctgaactgaaaagattgctcaccgggctccggtacgcaatcgccgccggcgaccaccaatttgttcatcgcatatcccactatagttaaaattcattgaattacctagtacggccgagatatggacagacaaaacctagcttcatcgtccgctccccgtggtggtgccactgtccatcctcccccacaacacgatgcttggatcaatacctaccnggaattttcatcctcagtggcagtctcttcttcctccaccgcaccagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactagacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttaatgaagccaggaatgttatttcaatatgaaccagaacttgatgctttccttgagtttctaatctggcgattttctatttgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgagcgtgcaagtgagattagaggaaaagtgaggactggattagagggaccaggacttactgttgctcaaaagatatggtactgtgttgcaacagttggtggtcaatatatatgggctcgtctacaatcattttctgcttttcggagatggggcgactctgagcagggtccttggcacgtgggagtgtggttgttatgcaacggnatggaggggatctataaagcagcatcttttagcaatttacttctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="12489" stop="17374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12789" g_stop="13050" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13852" g_stop="13965" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="376" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14072" g_stop="14225" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="530" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14226" i_stop="15070" i_length="845">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15071" g_stop="15207" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="667" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15208" i_stop="16988" i_length="1781">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16989" g_stop="17074" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="753" r_length="86" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E457857" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12789" e_stop="13050"/>
          <exon e_start="13852" e_stop="13965"/>
          <exon e_start="14072" e_stop="14225"/>
          <exon e_start="15071" e_stop="15207"/>
          <exon e_start="16989" e_stop="17074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACC-GGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAGGTTAGAAAAACATCATTGCTTAATCTTGTTGCTCCTTTTCTGTAAGTAGCTTGTATCAACCTTTTTTGTATCTCAGTGATGTTAGAAATTAAATTTGTTATATTGTGTTGCAAGCTATGCATCGATGAGATGGTTCTAGATTCTACTTTAGGGATTAATTTTAGACTTGCTATAGAATTTGAAACTTCACAGTCTCTAGTAGCTCAGCTGATCTATTAATAATTAAAAAGATTAAGACCAAAGTATCTAGAAACGCAAAAGATAAAGATAAAAAGGATTATAAAACAGTAATTCGAGATTAGTTGCCAACTACTTTCAGAAAAACAATGTATTGGAGCAGACAAAGGAAGATCATCAAAAATATGTCAATGTGAGGAGGTGACTTATTTGCCCAAAAAATGGCTTACTAAAGAAAGCATAAGAAGAACGAGTACAAAGTACAACCATCTTCTTCAGTTTGTAATGGAGGGACCATTGGAATTGACTTGTAAAATCTCTTTGGTCTTACTTTGTGTTTGTGTTTGAAATGAAGAGGTTGGCAGCTTGATTTAATTATTTTTGATATGGTAAAAATGTTTAAGGTTGGCAGCTTGATGTAATCACATTTCTTGTTTCTTGCATTAACTGCAATAATTTCAGTTGTAGTCTTATAGTTTGTTAAGTCTAAATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAGGTACTGCTCTCTCTGCCTCACATATTCGACACGTTTGCGTGCATGCCTGTTTTACTGGTGACAAATATGTTTATCACTAAGAGAACTCTTCGTTCTCTAATAGATAATACTCTTCAGTTTTGTTGACTTCAATTGTTAGAAATAATTAGTTATTAAGTCCTCCAATATTCTGACTTTGTGTAACAACTTTTAACCTTGAAAAGGAACCCCTCGATTTTTATTTTGTTTTGGCTTAGGCATATGAAATGTTAAGAAGGAAAATTTTTATATGCTTTGGAACTTCAAAATGTGCAACTTCAATGTAGGATCAGTAAAAACATCTATCACTGAAAAGCCTTGATCATTGGTATGAGTAGAATATTGACAAACAACAAGGATGTTGCCATGGACCATGAGAAACTAGTAGCCAAATTTTAGCTCAAAATCAATTTAGGTGATTTCTTCATGCATATCTTAACTTTGATAGATGTAGTTACCCGATGCATATGCTGTCAGGAGGTAGTATGCGCCGAAGGAGTAGTTGAGCTGCGTGCAAGTTAGTCCGCATACCACCATTATTATAAATACGGTGTAGAGTATTAACAAAATTGTGTCATCTAGGATCTTTTAGTCTGAAGATCATAAATAACATTGTAGTCAAGAACAATGAGATTCTTATGGTAACAACATGTCCAACAAAACTTTGTTATGTCATGGAATCTCCACAGCAGGCAATATTCTACATATAGAAAAGAAGTAGGAATTAGAAGTATTTCAGTTTGATTCTTTCCCCTGATCTTCATATAAATACAGATAGTATCAAAAATAAATAAAATTCAGATGAATAATAATTTTCCTTCAGCAGTATAATACTTACGGAACTTCTGAAAGCATTTTCTTGATAACTAGCAAAAATAAATGTTAATTTGAAATACTAGAGCAGAGCTTGTCTGTATTTAATAATCCAAATGACCAAATGTATTCTTGTGCCTTTTGTTTCAGCCTATCCAAATTTGTTTAATTTTCTCGAAAAGAAAATACTTGCATACGCTACATGAATACTTCTGCTGGAGAAGGGTATCATGTATATTCAATGTTATAGTGGTATTCTATCTAGCTGTTAGTTCTCTTTTATTGATTAACTAATCTTTTTGGCCATGTTATTACAATATGAGTAGCAATTGACCTTATCAAAACAAAATAGGAAAGAAGAGTTGAATTGATGGGGTCACATTTAGGGTCTACATGCTACTTTTAAGGTACCACGATTATTGAGGTAAACAATATATTCAGGGCCTAGATTATCAAGACGTGAGATAAACAATTCATTGATTAAATATTAGATTAGATGGGGAAATACGAAAGATCACAAGATATTTTCTCAAGTATGAAGAAATAGAAAAAAGTTAGTTCAAAAGTAAGGTGGACAATCAGGTTAAAATATGATGTCATGCAGCTTTCCTTTTTGACGTAATAGAAGAGGACAATTGGAATATGAAGTTGGGGAAATGTGAGATTGAGGAAGTATTGAAAATTCAATGTCATAGAAAAAGTACAAGTTTGTCCAAGTTTGGAAGCCATGTACATTTGCATAGTACAGTTTAAAGTCTTATGTTGATATCGCTGTTCAGTTGAACAGCTTTTGAAATAGGATTGGGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACTTGAAATCGTGTTAGTTTAATGAATAGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACAGATAAATTTATTCGTCACTTTTTAATTATGTATTTGCTTCAGAGGTCCTTGGCACGT-GGAGTGTGGTTGTTAATGCAACGG-ATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTT</genome_strand>
        <mrna_strand>CTGAACTGAAAAGATTGCTCACC-GGGCTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTGTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTACCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCGTCCGCTCCCCGTGGTGGTGCCACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACCTACCNGGAATTTTCATCCTCAGTGGCAGTCTCTTCTTCCTCCACCGCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTAGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTAATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTCCTTGAGTTTCTAATCTGGCGATTTTCTATTTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAGCGTGCAAGTGAGATTAGAGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGCGACTCTGAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-GGTCCTTGGCACGTGGGAGTGTGGTTGTT-ATGCAACGGNATGGAGGGGATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E266391" ref_strand="+" ref_description="SGN-E266391 [cLEI-3-K12]">
      <seq>tgaactgaaaagattgctcaccggggttccggtacgcaatcgccgccggcgaccaccaatttcttcatcgcatatcccactatagttaaaattcattgaattatctagtacggccgagatatggacagacaaaacctagcttcatcctccgctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagttggttaaagtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgaacgtgcaagtgagattagaggaaaagtgaggactggattagagggaccaggacttactgttgctcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="12490" stop="15414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12790" g_stop="13050" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13852" g_stop="13965" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="375" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14072" g_stop="14225" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="529" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14226" i_stop="15070" i_length="845">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15071" g_stop="15114" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="573" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E266391" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12790" e_stop="13050"/>
          <exon e_start="13852" e_stop="13965"/>
          <exon e_start="14072" e_stop="14225"/>
          <exon e_start="15071" e_stop="15114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAGGTTAGAAAAACATCATTGCTTAATCTTGTTGCTCCTTTTCTGTAAGTAGCTTGTATCAACCTTTTTTGTATCTCAGTGATGTTAGAAATTAAATTTGTTATATTGTGTTGCAAGCTATGCATCGATGAGATGGTTCTAGATTCTACTTTAGGGATTAATTTTAGACTTGCTATAGAATTTGAAACTTCACAGTCTCTAGTAGCTCAGCTGATCTATTAATAATTAAAAAGATTAAGACCAAAGTATCTAGAAACGCAAAAGATAAAGATAAAAAGGATTATAAAACAGTAATTCGAGATTAGTTGCCAACTACTTTCAGAAAAACAATGTATTGGAGCAGACAAAGGAAGATCATCAAAAATATGTCAATGTGAGGAGGTGACTTATTTGCCCAAAAAATGGCTTACTAAAGAAAGCATAAGAAGAACGAGTACAAAGTACAACCATCTTCTTCAGTTTGTAATGGAGGGACCATTGGAATTGACTTGTAAAATCTCTTTGGTCTTACTTTGTGTTTGTGTTTGAAATGAAGAGGTTGGCAGCTTGATTTAATTATTTTTGATATGGTAAAAATGTTTAAGGTTGGCAGCTTGATGTAATCACATTTCTTGTTTCTTGCATTAACTGCAATAATTTCAGTTGTAGTCTTATAGTTTGTTAAGTCTAAATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAG</genome_strand>
        <mrna_strand>TGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAAGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E538004" ref_strand="+" ref_description="SGN-E538004 [TUS-56-O9]">
      <seq>gaaaagattgctcaccggggttccggtacgcaatcgccgccggcgaccaccaatttcttcatcgcatatcccactatagttaaaattcattgaattatctagtacggccgagatatggacagacaaaacctagcttcatcctccgctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgaacgtgcaagtgagattagaggaaaagtgaggactggattagagggaccaggacttactgttgctcaaaagatatggtactgtgttgcaacagttggtggtcaatatatatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="12496" stop="15459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12796" g_stop="13050" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13852" g_stop="13965" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="369" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14072" g_stop="14225" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="523" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14226" i_stop="15070" i_length="845">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15071" g_stop="15159" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="612" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E538004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12796" e_stop="13050"/>
          <exon e_start="13852" e_stop="13965"/>
          <exon e_start="14072" e_stop="14225"/>
          <exon e_start="15071" e_stop="15159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAGGTTAGAAAAACATCATTGCTTAATCTTGTTGCTCCTTTTCTGTAAGTAGCTTGTATCAACCTTTTTTGTATCTCAGTGATGTTAGAAATTAAATTTGTTATATTGTGTTGCAAGCTATGCATCGATGAGATGGTTCTAGATTCTACTTTAGGGATTAATTTTAGACTTGCTATAGAATTTGAAACTTCACAGTCTCTAGTAGCTCAGCTGATCTATTAATAATTAAAAAGATTAAGACCAAAGTATCTAGAAACGCAAAAGATAAAGATAAAAAGGATTATAAAACAGTAATTCGAGATTAGTTGCCAACTACTTTCAGAAAAACAATGTATTGGAGCAGACAAAGGAAGATCATCAAAAATATGTCAATGTGAGGAGGTGACTTATTTGCCCAAAAAATGGCTTACTAAAGAAAGCATAAGAAGAACGAGTACAAAGTACAACCATCTTCTTCAGTTTGTAATGGAGGGACCATTGGAATTGACTTGTAAAATCTCTTTGGTCTTACTTTGTGTTTGTGTTTGAAATGAAGAGGTTGGCAGCTTGATTTAATTATTTTTGATATGGTAAAAATGTTTAAGGTTGGCAGCTTGATGTAATCACATTTCTTGTTTCTTGCATTAACTGCAATAATTTCAGTTGTAGTCTTATAGTTTGTTAAGTCTAAATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCT</genome_strand>
        <mrna_strand>GAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E267780" ref_strand="+" ref_description="SGN-E267780 [cLEI-12-F18]">
      <seq>aaaagattgctcaccggggttccggtacgcaatcgccgccggcgaccaccaatttcttcatcgcatatcccactatagttaaaattcattgaattatctagtacggccgagatatggacagacaaaacctagcttcatcctccgctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagatacagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="12497" stop="14496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12797" g_stop="13050" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13852" g_stop="13965" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="368" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14072" g_stop="14196" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="493" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E267780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12797" e_stop="13050"/>
          <exon e_start="13852" e_stop="13965"/>
          <exon e_start="14072" e_stop="14196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGA</genome_strand>
        <mrna_strand>AAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E249415" ref_strand="+" ref_description="SGN-E249415 [cLEF-50-N7]">
      <seq>aatgctcaccggggttcccgtacccaatcgccgccggcgaccaccaatttcttcatcgcatatcccactatagttaaaattcattgaattatctagtacggcccagaaatggacagaaaaaacctagcttcatcctcccctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactggacattgaaatgtcagccatgctaaaagaacagttggttaaggtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="12502" stop="14490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12802" g_stop="13050" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13852" g_stop="13965" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="363" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14072" g_stop="14190" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="482" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E249415" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12802" e_stop="13050"/>
          <exon e_start="13852" e_stop="13965"/>
          <exon e_start="14072" e_stop="14190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATA</genome_strand>
        <mrna_strand>AATGCTCACCGGGGTTCCCGTACCCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCCAGAAATGGACAGAAAAAACCTAGCTTCATCCTCCCCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAACAGTTGGTTAAGGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E485907" ref_strand="+" ref_description="SGN-E485907 [cSTE-20-E9]">
      <seq>ccgggctccggtacgcaatcgccgccggcgaccaccaatttgttcatcgcatatcccactatagttaaaattcattgaattacctagtacggccgagatatggacagacaaaacctagcttcatcgtccgctccccgtggtggtgccactgtccatcctcccccacaacacgatgcttggatcaatacctaccggaattttcatcctcagtggcagtctcttcttcctccaccgcaccagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactagacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttaatgaagccaggaatgttatttcaatatgaaccagaacttgatgctttccttgagtttctaatctggcgattttctatttgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgagcgtgcaagtgagattagaggaaaagtgaggactggattagagggaccaggacttactgttgctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="12511" stop="15412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12811" g_stop="13050" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13852" g_stop="13965" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="354" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14072" g_stop="14225" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="508" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14226" i_stop="15070" i_length="845">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15071" g_stop="15112" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="550" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E485907" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12811" e_stop="13050"/>
          <exon e_start="13852" e_stop="13965"/>
          <exon e_start="14072" e_stop="14225"/>
          <exon e_start="15071" e_stop="15112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAGGTTAGAAAAACATCATTGCTTAATCTTGTTGCTCCTTTTCTGTAAGTAGCTTGTATCAACCTTTTTTGTATCTCAGTGATGTTAGAAATTAAATTTGTTATATTGTGTTGCAAGCTATGCATCGATGAGATGGTTCTAGATTCTACTTTAGGGATTAATTTTAGACTTGCTATAGAATTTGAAACTTCACAGTCTCTAGTAGCTCAGCTGATCTATTAATAATTAAAAAGATTAAGACCAAAGTATCTAGAAACGCAAAAGATAAAGATAAAAAGGATTATAAAACAGTAATTCGAGATTAGTTGCCAACTACTTTCAGAAAAACAATGTATTGGAGCAGACAAAGGAAGATCATCAAAAATATGTCAATGTGAGGAGGTGACTTATTTGCCCAAAAAATGGCTTACTAAAGAAAGCATAAGAAGAACGAGTACAAAGTACAACCATCTTCTTCAGTTTGTAATGGAGGGACCATTGGAATTGACTTGTAAAATCTCTTTGGTCTTACTTTGTGTTTGTGTTTGAAATGAAGAGGTTGGCAGCTTGATTTAATTATTTTTGATATGGTAAAAATGTTTAAGGTTGGCAGCTTGATGTAATCACATTTCTTGTTTCTTGCATTAACTGCAATAATTTCAGTTGTAGTCTTATAGTTTGTTAAGTCTAAATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAA</genome_strand>
        <mrna_strand>CCGGGCTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTGTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTACCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCGTCCGCTCCCCGTGGTGGTGCCACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACCTACCGGAATTTTCATCCTCAGTGGCAGTCTCTTCTTCCTCCACCGCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTAGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTAATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTCCTTGAGTTTCTAATCTGGCGATTTTCTATTTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAGCGTGCAAGTGAGATTAGAGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E307806" ref_strand="+" ref_description="SGN-E307806 [cLEY-20-C5]">
      <seq>gtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgaacgtgcaagtgagattagaggaaaagtgaggactggattagagggaccaggacttactgttgctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="13588" stop="15412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13888" g_stop="13965" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14072" g_stop="14225" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="232" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14226" i_stop="15070" i_length="845">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15071" g_stop="15112" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="274" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E307806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13888" e_stop="13965"/>
          <exon e_start="14072" e_stop="14225"/>
          <exon e_start="15071" e_stop="15112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAGGTTAGAAAAACATCATTGCTTAATCTTGTTGCTCCTTTTCTGTAAGTAGCTTGTATCAACCTTTTTTGTATCTCAGTGATGTTAGAAATTAAATTTGTTATATTGTGTTGCAAGCTATGCATCGATGAGATGGTTCTAGATTCTACTTTAGGGATTAATTTTAGACTTGCTATAGAATTTGAAACTTCACAGTCTCTAGTAGCTCAGCTGATCTATTAATAATTAAAAAGATTAAGACCAAAGTATCTAGAAACGCAAAAGATAAAGATAAAAAGGATTATAAAACAGTAATTCGAGATTAGTTGCCAACTACTTTCAGAAAAACAATGTATTGGAGCAGACAAAGGAAGATCATCAAAAATATGTCAATGTGAGGAGGTGACTTATTTGCCCAAAAAATGGCTTACTAAAGAAAGCATAAGAAGAACGAGTACAAAGTACAACCATCTTCTTCAGTTTGTAATGGAGGGACCATTGGAATTGACTTGTAAAATCTCTTTGGTCTTACTTTGTGTTTGTGTTTGAAATGAAGAGGTTGGCAGCTTGATTTAATTATTTTTGATATGGTAAAAATGTTTAAGGTTGGCAGCTTGATGTAATCACATTTCTTGTTTCTTGCATTAACTGCAATAATTTCAGTTGTAGTCTTATAGTTTGTTAAGTCTAAATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAA</genome_strand>
        <mrna_strand>GTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E274839" ref_strand="+" ref_description="SGN-E274839 [cLEN-13-D4]">
      <seq>attagcaagggtgtataatcaatctgatttggaaggattgtcttggaaaatctcctttgtcttactttgtgtttgaagtgctaaggttgacagcttgatgcagtttcattttttctttcttgcatcaactgctataatttcagttgtagttctgtttccttttccatgttttttatagtgaggactggattagagggaccaggacttactgttgctcaaaagatatggtactgtgttgcaacagttggtggtcaatatatatgggctcgtctacaatcattttctgcttttcggagatggggtgactctgagcagaggtccttggcacgtggagtgtggttgttaatgcaacggatggagggtatctataaagcagcatcttttagcaatttacttctctttctttacacaggaaggttcaggaatctcattgaaagagctttaagagctagacttgtttatgggagcccaaatatgaacagagctgtgagctttgagtacatgaatcgtcagttggtctggaatgaattctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="14593" stop="18306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14893" g_stop="15207" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15208" i_stop="16988" i_length="1781">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16989" g_stop="17089" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="416" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17090" i_stop="17888" i_length="799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17889" g_stop="18006" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="534" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E274839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14893" e_stop="15207"/>
          <exon e_start="16989" e_stop="17089"/>
          <exon e_start="17889" e_stop="18006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAGGTACTGCTCTCTCTGCCTCACATATTCGACACGTTTGCGTGCATGCCTGTTTTACTGGTGACAAATATGTTTATCACTAAGAGAACTCTTCGTTCTCTAATAGATAATACTCTTCAGTTTTGTTGACTTCAATTGTTAGAAATAATTAGTTATTAAGTCCTCCAATATTCTGACTTTGTGTAACAACTTTTAACCTTGAAAAGGAACCCCTCGATTTTTATTTTGTTTTGGCTTAGGCATATGAAATGTTAAGAAGGAAAATTTTTATATGCTTTGGAACTTCAAAATGTGCAACTTCAATGTAGGATCAGTAAAAACATCTATCACTGAAAAGCCTTGATCATTGGTATGAGTAGAATATTGACAAACAACAAGGATGTTGCCATGGACCATGAGAAACTAGTAGCCAAATTTTAGCTCAAAATCAATTTAGGTGATTTCTTCATGCATATCTTAACTTTGATAGATGTAGTTACCCGATGCATATGCTGTCAGGAGGTAGTATGCGCCGAAGGAGTAGTTGAGCTGCGTGCAAGTTAGTCCGCATACCACCATTATTATAAATACGGTGTAGAGTATTAACAAAATTGTGTCATCTAGGATCTTTTAGTCTGAAGATCATAAATAACATTGTAGTCAAGAACAATGAGATTCTTATGGTAACAACATGTCCAACAAAACTTTGTTATGTCATGGAATCTCCACAGCAGGCAATATTCTACATATAGAAAAGAAGTAGGAATTAGAAGTATTTCAGTTTGATTCTTTCCCCTGATCTTCATATAAATACAGATAGTATCAAAAATAAATAAAATTCAGATGAATAATAATTTTCCTTCAGCAGTATAATACTTACGGAACTTCTGAAAGCATTTTCTTGATAACTAGCAAAAATAAATGTTAATTTGAAATACTAGAGCAGAGCTTGTCTGTATTTAATAATCCAAATGACCAAATGTATTCTTGTGCCTTTTGTTTCAGCCTATCCAAATTTGTTTAATTTTCTCGAAAAGAAAATACTTGCATACGCTACATGAATACTTCTGCTGGAGAAGGGTATCATGTATATTCAATGTTATAGTGGTATTCTATCTAGCTGTTAGTTCTCTTTTATTGATTAACTAATCTTTTTGGCCATGTTATTACAATATGAGTAGCAATTGACCTTATCAAAACAAAATAGGAAAGAAGAGTTGAATTGATGGGGTCACATTTAGGGTCTACATGCTACTTTTAAGGTACCACGATTATTGAGGTAAACAATATATTCAGGGCCTAGATTATCAAGACGTGAGATAAACAATTCATTGATTAAATATTAGATTAGATGGGGAAATACGAAAGATCACAAGATATTTTCTCAAGTATGAAGAAATAGAAAAAAGTTAGTTCAAAAGTAAGGTGGACAATCAGGTTAAAATATGATGTCATGCAGCTTTCCTTTTTGACGTAATAGAAGAGGACAATTGGAATATGAAGTTGGGGAAATGTGAGATTGAGGAAGTATTGAAAATTCAATGTCATAGAAAAAGTACAAGTTTGTCCAAGTTTGGAAGCCATGTACATTTGCATAGTACAGTTTAAAGTCTTATGTTGATATCGCTGTTCAGTTGAACAGCTTTTGAAATAGGATTGGGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACTTGAAATCGTGTTAGTTTAATGAATAGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACAGATAAATTTATTCGTCACTTTTTAATTATGTATTTGCTTCAGAGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAGGTATATCTCTTACTGCAAAGACTTTACTTTTTATTTCTTTTTCAATGCATAACATGACCACCGGATAAAAGAAGAAGATGACAGAAATCTAGTTCACAAAGTAGTTCTGTCAGTAATACTGCCTGAGTCTGTGCTGCCTGAATCTGTGCTGTAAGAACTAACAGACCGGTGCATGGGTATCAGAGGCACACATATGAGCTTGTATTGCTTTATGACAAATTTTCAATGGGAAAAGGTTAAAATAGGGAACTTTCTAAGTTTGAATCTGTGGAGAATGTTCTATTAAAGAGGTCATATCAGGATGAGTTGAAACTGACCAAGTTCTTATTGTTTCAAATGATATATTACAAACTTTTTGAGTTGGGAACCATCATTTCGTGGAAAAACACTTTTAGTCGAGGGGCATACGTTGAGAACTTGCAATAAAAGCCCCCATTTTTCTTCTGAAAAGCAAATGGCATCTAAGCTTCATTGTTTCTTTGTTTTTACTTGACTGTAGTGAGCTATGGCCACAATATCTGTCATCAATTTGTACATGCATCTCCATCCAATCAGACAGTGATTCCTCGTATGAGGGACTCAGGTCCCCAACTTAGTGCTGGAATCATGCGGCATGATAAACTTTTTGCACATTAGGATGGTTGATACTACTGATTCTTTAAAGATATATGGGAGCCCTAATATGCACAGTGCATCATTTGGTTGTAATAAATTTCCCTTGCATGTGATCTGGCCAATAAATTTAACACATTACAACTTCTTACATTAATGGTTTTCTACATGTATCAACTACATGCAGGTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG</genome_strand>
        <mrna_strand>ATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E276730" ref_strand="+" ref_description="SGN-E276730 [cLEN-14-D2]">
      <seq>attagcaagggtgtattatcaatctgatttggaaggattgacttggaaaatctcctttgtcttactttgtgtttgaagtgctaaggttgacagcttgatgcagtttcattttttctttcttgcatcaactgctataatttcagttgtagttctgtttccttttccatgttttttatagtgaggactggattagagggaccaggacttactgttgctcaaaagatatggtactgcgttgcaacagttggtggtcaatatatatgggctcgtctacaatcattttctgcttttcggagatggggtgactctgagcagaggtccttggcacgtggagtgtggttgttcatgcaacggatggagggtatctataaagcagcatcttttagcaatttacttctctttctttacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="14593" stop="17384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14893" g_stop="15207" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15208" i_stop="16988" i_length="1781">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16989" g_stop="17084" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="411" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E276730" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14893" e_stop="15207"/>
          <exon e_start="16989" e_stop="17084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAGGTACTGCTCTCTCTGCCTCACATATTCGACACGTTTGCGTGCATGCCTGTTTTACTGGTGACAAATATGTTTATCACTAAGAGAACTCTTCGTTCTCTAATAGATAATACTCTTCAGTTTTGTTGACTTCAATTGTTAGAAATAATTAGTTATTAAGTCCTCCAATATTCTGACTTTGTGTAACAACTTTTAACCTTGAAAAGGAACCCCTCGATTTTTATTTTGTTTTGGCTTAGGCATATGAAATGTTAAGAAGGAAAATTTTTATATGCTTTGGAACTTCAAAATGTGCAACTTCAATGTAGGATCAGTAAAAACATCTATCACTGAAAAGCCTTGATCATTGGTATGAGTAGAATATTGACAAACAACAAGGATGTTGCCATGGACCATGAGAAACTAGTAGCCAAATTTTAGCTCAAAATCAATTTAGGTGATTTCTTCATGCATATCTTAACTTTGATAGATGTAGTTACCCGATGCATATGCTGTCAGGAGGTAGTATGCGCCGAAGGAGTAGTTGAGCTGCGTGCAAGTTAGTCCGCATACCACCATTATTATAAATACGGTGTAGAGTATTAACAAAATTGTGTCATCTAGGATCTTTTAGTCTGAAGATCATAAATAACATTGTAGTCAAGAACAATGAGATTCTTATGGTAACAACATGTCCAACAAAACTTTGTTATGTCATGGAATCTCCACAGCAGGCAATATTCTACATATAGAAAAGAAGTAGGAATTAGAAGTATTTCAGTTTGATTCTTTCCCCTGATCTTCATATAAATACAGATAGTATCAAAAATAAATAAAATTCAGATGAATAATAATTTTCCTTCAGCAGTATAATACTTACGGAACTTCTGAAAGCATTTTCTTGATAACTAGCAAAAATAAATGTTAATTTGAAATACTAGAGCAGAGCTTGTCTGTATTTAATAATCCAAATGACCAAATGTATTCTTGTGCCTTTTGTTTCAGCCTATCCAAATTTGTTTAATTTTCTCGAAAAGAAAATACTTGCATACGCTACATGAATACTTCTGCTGGAGAAGGGTATCATGTATATTCAATGTTATAGTGGTATTCTATCTAGCTGTTAGTTCTCTTTTATTGATTAACTAATCTTTTTGGCCATGTTATTACAATATGAGTAGCAATTGACCTTATCAAAACAAAATAGGAAAGAAGAGTTGAATTGATGGGGTCACATTTAGGGTCTACATGCTACTTTTAAGGTACCACGATTATTGAGGTAAACAATATATTCAGGGCCTAGATTATCAAGACGTGAGATAAACAATTCATTGATTAAATATTAGATTAGATGGGGAAATACGAAAGATCACAAGATATTTTCTCAAGTATGAAGAAATAGAAAAAAGTTAGTTCAAAAGTAAGGTGGACAATCAGGTTAAAATATGATGTCATGCAGCTTTCCTTTTTGACGTAATAGAAGAGGACAATTGGAATATGAAGTTGGGGAAATGTGAGATTGAGGAAGTATTGAAAATTCAATGTCATAGAAAAAGTACAAGTTTGTCCAAGTTTGGAAGCCATGTACATTTGCATAGTACAGTTTAAAGTCTTATGTTGATATCGCTGTTCAGTTGAACAGCTTTTGAAATAGGATTGGGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACTTGAAATCGTGTTAGTTTAATGAATAGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACAGATAAATTTATTCGTCACTTTTTAATTATGTATTTGCTTCAGAGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACA</genome_strand>
        <mrna_strand>ATTAGCAAGGGTGTATTATCAATCTGATTTGGAAGGATTGACTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGCGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCCTTGGCACGTGGAGTGTGGTTGTTCATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E274504" ref_strand="+" ref_description="SGN-E274504 [cLEN-11-F21]">
      <seq>attagcaagggtgtataatcaatctgatttggaaggattgtcttggaaaatctcctttgtcttactttgtgtttgaagtgctaaggatgacagcttgatgcagtttcattttttctttcttgcatcaactgctataatttcagttgtggttctgcttccttttccatgttttttatagtgaggactgcattagagggaccaggacttactgttgctcaaaagatatggtactgtgttgcaacagttggtggtcaatatatatggactcgtctacaatcattttctgcttttcggagatggggtgactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="14593" stop="15502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14893" g_stop="15202" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E274504" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14893" e_stop="15202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTG</genome_strand>
        <mrna_strand>ATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGATGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTGGTTCTGCTTCCTTTTCCATGTTTTTTATAGTGAGGACTGCATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGACTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E276731" ref_strand="+" ref_description="SGN-E276731 [cLEN-14-D4]">
      <seq>gtgtataatcaatctgatttggaaggattgtcttggaaaatctcctttgtcttactttgtgtttgaagtgctaaagttgacagcttgatgcagtttcattttttctttcttgcatcaactgctataatttcagttgtagttctgtttccttttccatgttttttatagtgaggactggattagagggaccaggacttactgttgctcaaaagatatggtactgtgttgcaacagttggtggtcaatatatatgggctcgtctacaatcattttctgcttttcggagatggggtgactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="14603" stop="15502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14903" g_stop="15202" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E276731" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14903" e_stop="15202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTG</genome_strand>
        <mrna_strand>GTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAAGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E292597" ref_strand="+" ref_description="SGN-E292597 [cLET-16-J16]">
      <seq>ctacaatcattttctgcttttcggagatggggtgactctgagcagaggtccttggcacgtggagtgtggttgttaatgcaacggatggagggtatctataaagcagcatcttttagcaatttacttctctttctttacacaggaaggttcaggaatctcattgaaagagctttaagagctagacttgtttatgggagcccaaatatgaacagagctgtgagctttgagtacatgaatcgtcagttggtctggaatgaattctcggaactgctgctcttgcttcttccccttctcaattcagcatctgtcaagagtttccttcgtccattctcaaaggacaaatcttcagattcttcagtagatgaaactttatgccccatctgccagggaaccccatcaattccatttgtagctatcccttgtcagcataggtactgttactactgtcttcaaacaaggtgctctgcatcttcatcgtttcgttgccccagatgtggtgaaccagttgctgctatgcaacggcatggtggtttagtcagcaacattcctcagaaacaatgattgttctgcaaagtgattgaaatgataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="14863" stop="19460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15163" g_stop="15207" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15208" i_stop="16988" i_length="1781">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16989" g_stop="17089" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="146" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17090" i_stop="17888" i_length="799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17889" g_stop="18006" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="264" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18007" i_stop="18277" i_length="271">
            <donor d_prob="0.230" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18278" g_stop="18444" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="431" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18445" i_stop="18998" i_length="554">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18999" g_stop="19160" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="593" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E292597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15163" e_stop="15207"/>
          <exon e_start="16989" e_stop="17089"/>
          <exon e_start="17889" e_stop="18006"/>
          <exon e_start="18278" e_stop="18444"/>
          <exon e_start="18999" e_stop="19160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAGGTACTGCTCTCTCTGCCTCACATATTCGACACGTTTGCGTGCATGCCTGTTTTACTGGTGACAAATATGTTTATCACTAAGAGAACTCTTCGTTCTCTAATAGATAATACTCTTCAGTTTTGTTGACTTCAATTGTTAGAAATAATTAGTTATTAAGTCCTCCAATATTCTGACTTTGTGTAACAACTTTTAACCTTGAAAAGGAACCCCTCGATTTTTATTTTGTTTTGGCTTAGGCATATGAAATGTTAAGAAGGAAAATTTTTATATGCTTTGGAACTTCAAAATGTGCAACTTCAATGTAGGATCAGTAAAAACATCTATCACTGAAAAGCCTTGATCATTGGTATGAGTAGAATATTGACAAACAACAAGGATGTTGCCATGGACCATGAGAAACTAGTAGCCAAATTTTAGCTCAAAATCAATTTAGGTGATTTCTTCATGCATATCTTAACTTTGATAGATGTAGTTACCCGATGCATATGCTGTCAGGAGGTAGTATGCGCCGAAGGAGTAGTTGAGCTGCGTGCAAGTTAGTCCGCATACCACCATTATTATAAATACGGTGTAGAGTATTAACAAAATTGTGTCATCTAGGATCTTTTAGTCTGAAGATCATAAATAACATTGTAGTCAAGAACAATGAGATTCTTATGGTAACAACATGTCCAACAAAACTTTGTTATGTCATGGAATCTCCACAGCAGGCAATATTCTACATATAGAAAAGAAGTAGGAATTAGAAGTATTTCAGTTTGATTCTTTCCCCTGATCTTCATATAAATACAGATAGTATCAAAAATAAATAAAATTCAGATGAATAATAATTTTCCTTCAGCAGTATAATACTTACGGAACTTCTGAAAGCATTTTCTTGATAACTAGCAAAAATAAATGTTAATTTGAAATACTAGAGCAGAGCTTGTCTGTATTTAATAATCCAAATGACCAAATGTATTCTTGTGCCTTTTGTTTCAGCCTATCCAAATTTGTTTAATTTTCTCGAAAAGAAAATACTTGCATACGCTACATGAATACTTCTGCTGGAGAAGGGTATCATGTATATTCAATGTTATAGTGGTATTCTATCTAGCTGTTAGTTCTCTTTTATTGATTAACTAATCTTTTTGGCCATGTTATTACAATATGAGTAGCAATTGACCTTATCAAAACAAAATAGGAAAGAAGAGTTGAATTGATGGGGTCACATTTAGGGTCTACATGCTACTTTTAAGGTACCACGATTATTGAGGTAAACAATATATTCAGGGCCTAGATTATCAAGACGTGAGATAAACAATTCATTGATTAAATATTAGATTAGATGGGGAAATACGAAAGATCACAAGATATTTTCTCAAGTATGAAGAAATAGAAAAAAGTTAGTTCAAAAGTAAGGTGGACAATCAGGTTAAAATATGATGTCATGCAGCTTTCCTTTTTGACGTAATAGAAGAGGACAATTGGAATATGAAGTTGGGGAAATGTGAGATTGAGGAAGTATTGAAAATTCAATGTCATAGAAAAAGTACAAGTTTGTCCAAGTTTGGAAGCCATGTACATTTGCATAGTACAGTTTAAAGTCTTATGTTGATATCGCTGTTCAGTTGAACAGCTTTTGAAATAGGATTGGGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACTTGAAATCGTGTTAGTTTAATGAATAGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACAGATAAATTTATTCGTCACTTTTTAATTATGTATTTGCTTCAGAGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAGGTATATCTCTTACTGCAAAGACTTTACTTTTTATTTCTTTTTCAATGCATAACATGACCACCGGATAAAAGAAGAAGATGACAGAAATCTAGTTCACAAAGTAGTTCTGTCAGTAATACTGCCTGAGTCTGTGCTGCCTGAATCTGTGCTGTAAGAACTAACAGACCGGTGCATGGGTATCAGAGGCACACATATGAGCTTGTATTGCTTTATGACAAATTTTCAATGGGAAAAGGTTAAAATAGGGAACTTTCTAAGTTTGAATCTGTGGAGAATGTTCTATTAAAGAGGTCATATCAGGATGAGTTGAAACTGACCAAGTTCTTATTGTTTCAAATGATATATTACAAACTTTTTGAGTTGGGAACCATCATTTCGTGGAAAAACACTTTTAGTCGAGGGGCATACGTTGAGAACTTGCAATAAAAGCCCCCATTTTTCTTCTGAAAAGCAAATGGCATCTAAGCTTCATTGTTTCTTTGTTTTTACTTGACTGTAGTGAGCTATGGCCACAATATCTGTCATCAATTTGTACATGCATCTCCATCCAATCAGACAGTGATTCCTCGTATGAGGGACTCAGGTCCCCAACTTAGTGCTGGAATCATGCGGCATGATAAACTTTTTGCACATTAGGATGGTTGATACTACTGATTCTTTAAAGATATATGGGAGCCCTAATATGCACAGTGCATCATTTGGTTGTAATAAATTTCCCTTGCATGTGATCTGGCCAATAAATTTAACACATTACAACTTCTTACATTAATGGTTTTCTACATGTATCAACTACATGCAGGTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCGGTAATTGTCCTTCCATTGTCGTTATCTCACAATATGCCCGTCCAGAAAGTATTAAAAAAGACTCACTAAGAAATTTCTAGATAGTTTGAATCATTAACAATATAGAGTTTTACATATTCTTTTAGCTGTTTTACTGGATTGTAAATTTTTTTTGCTTTACAGTTCAAACTTTGCAGCTTCTGTTTCTGGCTTTACCTTGTTGACATGTTTGGTTTCTCAGTAGGCAAACAATGTGAAGGAGTTGGATTTTAAACAATTTTCTAATATGCAGGAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAGGTATGTACATTTACATGCTTTCATTTATACAATAGAATGGTAATGCAGTATTCTCATATATGCTTATATGCCTTTATTAAGAACATACTTCGACGTTTCTTAACTGAAGAAATCCTTATCATAGAATAATGAGGATTTGTGGAAATTGCTGCTAGACAATCCTAGGTTAGTGTAGGCATTATTATTAATGCTCTTTCCAGGTGAAAATTGTTTGGACCGTTGTGTTGAGTATGGTTCTAATATTACTGTCGGCACAGAACATCAGAGTCAAAACTACTTTTACTTCAGGTTTACAACCAAAATAAGTTTTCATTACATTGTTTGTATCACCTCGTCTGCAACTTAAAGATGATTGAGTCCAGTTTCTACAAGCCAACCATGGTTCTCATATTAGGAGCTATTGAGCTTCTCGAAATCATATATATGCTTTCTTTCGTTGGTCTTTTGCCATGCTTTCTATTCGACAGTTTTCAATGTTCAGAATCATTTCTATCGTTAGTTTGCTTTGCATAAATGATTCTGAAATTTCAGGTGTTTGTATTTCAATGTTATAGGTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAA</genome_strand>
        <mrna_strand>CTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG...............................................................................................................................................................................................................................................................................GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E247442" ref_strand="+" ref_description="SGN-E247442 [cLEG-3-G19]">
      <seq>gactctgagcagaggtccttggcacgtggagtgtggttgttaatgcaacggatggagggtatctataaagcagcatcttttagcaatttacttctctttctttacacaggaaggttcaggaatctcattgaaagagctttaagagctagacttgtttatgggagcccaaatatgaacagagctgtgagctttgagtacatgaatcgtcagttggtctggaatgaattctcggaactgctgctcttgcttcttccccttctcaattcagcatctgtcaagagtttccttcgtccattctcaaaggacaaatcttcagattcttcagtagatgaaactttatgccccatctgccagggaaccccatcaattccatttgtagctatcccttgtcagcataggtactgttactactgtcttcaaacaaggtgctctgcatcttcatcgtttcgttgccccagatgtggtgaaccagttgctgctatgcaacggcatggtggtttagtcagcaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="16686" stop="19413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16989" g_stop="17089" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="113" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17090" i_stop="17888" i_length="799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17889" g_stop="18006" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="231" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18007" i_stop="18277" i_length="271">
            <donor d_prob="0.230" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18278" g_stop="18444" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="398" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18445" i_stop="18998" i_length="554">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18999" g_stop="19113" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="513" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E247442" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16989" e_stop="17089"/>
          <exon e_start="17889" e_stop="18006"/>
          <exon e_start="18278" e_stop="18444"/>
          <exon e_start="18999" e_stop="19113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAGGTATATCTCTTACTGCAAAGACTTTACTTTTTATTTCTTTTTCAATGCATAACATGACCACCGGATAAAAGAAGAAGATGACAGAAATCTAGTTCACAAAGTAGTTCTGTCAGTAATACTGCCTGAGTCTGTGCTGCCTGAATCTGTGCTGTAAGAACTAACAGACCGGTGCATGGGTATCAGAGGCACACATATGAGCTTGTATTGCTTTATGACAAATTTTCAATGGGAAAAGGTTAAAATAGGGAACTTTCTAAGTTTGAATCTGTGGAGAATGTTCTATTAAAGAGGTCATATCAGGATGAGTTGAAACTGACCAAGTTCTTATTGTTTCAAATGATATATTACAAACTTTTTGAGTTGGGAACCATCATTTCGTGGAAAAACACTTTTAGTCGAGGGGCATACGTTGAGAACTTGCAATAAAAGCCCCCATTTTTCTTCTGAAAAGCAAATGGCATCTAAGCTTCATTGTTTCTTTGTTTTTACTTGACTGTAGTGAGCTATGGCCACAATATCTGTCATCAATTTGTACATGCATCTCCATCCAATCAGACAGTGATTCCTCGTATGAGGGACTCAGGTCCCCAACTTAGTGCTGGAATCATGCGGCATGATAAACTTTTTGCACATTAGGATGGTTGATACTACTGATTCTTTAAAGATATATGGGAGCCCTAATATGCACAGTGCATCATTTGGTTGTAATAAATTTCCCTTGCATGTGATCTGGCCAATAAATTTAACACATTACAACTTCTTACATTAATGGTTTTCTACATGTATCAACTACATGCAGGTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCGGTAATTGTCCTTCCATTGTCGTTATCTCACAATATGCCCGTCCAGAAAGTATTAAAAAAGACTCACTAAGAAATTTCTAGATAGTTTGAATCATTAACAATATAGAGTTTTACATATTCTTTTAGCTGTTTTACTGGATTGTAAATTTTTTTTGCTTTACAGTTCAAACTTTGCAGCTTCTGTTTCTGGCTTTACCTTGTTGACATGTTTGGTTTCTCAGTAGGCAAACAATGTGAAGGAGTTGGATTTTAAACAATTTTCTAATATGCAGGAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAGGTATGTACATTTACATGCTTTCATTTATACAATAGAATGGTAATGCAGTATTCTCATATATGCTTATATGCCTTTATTAAGAACATACTTCGACGTTTCTTAACTGAAGAAATCCTTATCATAGAATAATGAGGATTTGTGGAAATTGCTGCTAGACAATCCTAGGTTAGTGTAGGCATTATTATTAATGCTCTTTCCAGGTGAAAATTGTTTGGACCGTTGTGTTGAGTATGGTTCTAATATTACTGTCGGCACAGAACATCAGAGTCAAAACTACTTTTACTTCAGGTTTACAACCAAAATAAGTTTTCATTACATTGTTTGTATCACCTCGTCTGCAACTTAAAGATGATTGAGTCCAGTTTCTACAAGCCAACCATGGTTCTCATATTAGGAGCTATTGAGCTTCTCGAAATCATATATATGCTTTCTTTCGTTGGTCTTTTGCCATGCTTTCTATTCGACAGTTTTCAATGTTCAGAATCATTTCTATCGTTAGTTTGCTTTGCATAAATGATTCTGAAATTTCAGGTGTTTGTATTTCAATGTTATAGGTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATT</genome_strand>
        <mrna_strand>AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG...............................................................................................................................................................................................................................................................................GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E251933" ref_strand="+" ref_description="SGN-E251933 [cLEG-14-O23]">
      <seq>gactctgagcagaggtccttggcacgtggagtgtggttgttaatgcaacggatggagggtatctataaagcagcatcttttagcaatttacttctctttctttacacaggaaggttcaggaatctcattgaaagagctttaagagctagacttgtttatgggagcccaaatatgaacagagctgtgagctttgagtacatgaatcgtcagttggtctggaatgaattctcggaactgctgctcttgcttcttccccttctcaattcagcatctgtcaagagtttccttcgtccattctcaaaggacaaatcttcagattcttcagtagatgaaactttatgccccatctgccagggaaccccatcaattccatttgtagctatcccttgtcagcataggtactgttactactgtcttcaaacaaggtgctctgcatcttcatcgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="16686" stop="19348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16989" g_stop="17089" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="113" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17090" i_stop="17888" i_length="799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17889" g_stop="18006" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="231" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18007" i_stop="18277" i_length="271">
            <donor d_prob="0.230" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18278" g_stop="18444" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="398" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18445" i_stop="18998" i_length="554">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18999" g_stop="19048" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="448" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E251933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16989" e_stop="17089"/>
          <exon e_start="17889" e_stop="18006"/>
          <exon e_start="18278" e_stop="18444"/>
          <exon e_start="18999" e_stop="19048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAGGTATATCTCTTACTGCAAAGACTTTACTTTTTATTTCTTTTTCAATGCATAACATGACCACCGGATAAAAGAAGAAGATGACAGAAATCTAGTTCACAAAGTAGTTCTGTCAGTAATACTGCCTGAGTCTGTGCTGCCTGAATCTGTGCTGTAAGAACTAACAGACCGGTGCATGGGTATCAGAGGCACACATATGAGCTTGTATTGCTTTATGACAAATTTTCAATGGGAAAAGGTTAAAATAGGGAACTTTCTAAGTTTGAATCTGTGGAGAATGTTCTATTAAAGAGGTCATATCAGGATGAGTTGAAACTGACCAAGTTCTTATTGTTTCAAATGATATATTACAAACTTTTTGAGTTGGGAACCATCATTTCGTGGAAAAACACTTTTAGTCGAGGGGCATACGTTGAGAACTTGCAATAAAAGCCCCCATTTTTCTTCTGAAAAGCAAATGGCATCTAAGCTTCATTGTTTCTTTGTTTTTACTTGACTGTAGTGAGCTATGGCCACAATATCTGTCATCAATTTGTACATGCATCTCCATCCAATCAGACAGTGATTCCTCGTATGAGGGACTCAGGTCCCCAACTTAGTGCTGGAATCATGCGGCATGATAAACTTTTTGCACATTAGGATGGTTGATACTACTGATTCTTTAAAGATATATGGGAGCCCTAATATGCACAGTGCATCATTTGGTTGTAATAAATTTCCCTTGCATGTGATCTGGCCAATAAATTTAACACATTACAACTTCTTACATTAATGGTTTTCTACATGTATCAACTACATGCAGGTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCGGTAATTGTCCTTCCATTGTCGTTATCTCACAATATGCCCGTCCAGAAAGTATTAAAAAAGACTCACTAAGAAATTTCTAGATAGTTTGAATCATTAACAATATAGAGTTTTACATATTCTTTTAGCTGTTTTACTGGATTGTAAATTTTTTTTGCTTTACAGTTCAAACTTTGCAGCTTCTGTTTCTGGCTTTACCTTGTTGACATGTTTGGTTTCTCAGTAGGCAAACAATGTGAAGGAGTTGGATTTTAAACAATTTTCTAATATGCAGGAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAGGTATGTACATTTACATGCTTTCATTTATACAATAGAATGGTAATGCAGTATTCTCATATATGCTTATATGCCTTTATTAAGAACATACTTCGACGTTTCTTAACTGAAGAAATCCTTATCATAGAATAATGAGGATTTGTGGAAATTGCTGCTAGACAATCCTAGGTTAGTGTAGGCATTATTATTAATGCTCTTTCCAGGTGAAAATTGTTTGGACCGTTGTGTTGAGTATGGTTCTAATATTACTGTCGGCACAGAACATCAGAGTCAAAACTACTTTTACTTCAGGTTTACAACCAAAATAAGTTTTCATTACATTGTTTGTATCACCTCGTCTGCAACTTAAAGATGATTGAGTCCAGTTTCTACAAGCCAACCATGGTTCTCATATTAGGAGCTATTGAGCTTCTCGAAATCATATATATGCTTTCTTTCGTTGGTCTTTTGCCATGCTTTCTATTCGACAGTTTTCAATGTTCAGAATCATTTCTATCGTTAGTTTGCTTTGCATAAATGATTCTGAAATTTCAGGTGTTTGTATTTCAATGTTATAGGTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTC</genome_strand>
        <mrna_strand>AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG...............................................................................................................................................................................................................................................................................GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E538001" ref_strand="-" ref_description="SGN-E538001 [TUS-56-O9]">
      <seq>ctttctttacacaggaaggttcaggaatctcattgaaagagctttaagagctagacttgtttatgggagcccaaatatgaacagagctgtgagctttgagtacatgaatcgtcagttggtctggaatgaattctcggaactgctgctcttgcttcttccccttctcaattcagcatctgtcaagagtttccttcgtccattctcaaaggacaaatcttcagattcttcagtagatgaaactttatgccccatctgccagggaaccccatcaattccatttgtagctatcccttgtcagcataggtactgttactactgtcttcaaacaaggtgctctgcatcttcatcgtttcgttgccccagatgtggtgaaccagttgctgctatgcaacggcatggtggtttagtcagcaacattcctcagaaacaatgattgttctgcaaagtgattgaaatgataaaaaaaagggaagctaagttaaactatagatcaaaagttgctcaaaagacaacttgacaatgaaactaggtatctagattccttaataaagcttattgttctgctttattgagtgctttaattttttaatagtgtggttgtcccttttcctgtattttacatctcatttgtttatttaattgaaagataattttctcaaaaaaaaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="16772" stop="118927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17072" g_stop="17089" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17090" i_stop="17888" i_length="799">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17889" g_stop="18006" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="136" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18007" i_stop="18277" i_length="271">
            <donor d_prob="0.230" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18278" g_stop="18444" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="303" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18445" i_stop="18998" i_length="554">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18999" g_stop="19354" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="659" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19355" i_stop="19682" i_length="328">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.361" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19683" g_stop="19700" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="677" r_length="18" r_score="0.722"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E538001" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538001" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17072" e_stop="17089"/>
          <exon e_start="17889" e_stop="18006"/>
          <exon e_start="18278" e_stop="18444"/>
          <exon e_start="18999" e_stop="19354"/>
          <exon e_start="19683" e_stop="19700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTTACACAGGAAGGTATATCTCTTACTGCAAAGACTTTACTTTTTATTTCTTTTTCAATGCATAACATGACCACCGGATAAAAGAAGAAGATGACAGAAATCTAGTTCACAAAGTAGTTCTGTCAGTAATACTGCCTGAGTCTGTGCTGCCTGAATCTGTGCTGTAAGAACTAACAGACCGGTGCATGGGTATCAGAGGCACACATATGAGCTTGTATTGCTTTATGACAAATTTTCAATGGGAAAAGGTTAAAATAGGGAACTTTCTAAGTTTGAATCTGTGGAGAATGTTCTATTAAAGAGGTCATATCAGGATGAGTTGAAACTGACCAAGTTCTTATTGTTTCAAATGATATATTACAAACTTTTTGAGTTGGGAACCATCATTTCGTGGAAAAACACTTTTAGTCGAGGGGCATACGTTGAGAACTTGCAATAAAAGCCCCCATTTTTCTTCTGAAAAGCAAATGGCATCTAAGCTTCATTGTTTCTTTGTTTTTACTTGACTGTAGTGAGCTATGGCCACAATATCTGTCATCAATTTGTACATGCATCTCCATCCAATCAGACAGTGATTCCTCGTATGAGGGACTCAGGTCCCCAACTTAGTGCTGGAATCATGCGGCATGATAAACTTTTTGCACATTAGGATGGTTGATACTACTGATTCTTTAAAGATATATGGGAGCCCTAATATGCACAGTGCATCATTTGGTTGTAATAAATTTCCCTTGCATGTGATCTGGCCAATAAATTTAACACATTACAACTTCTTACATTAATGGTTTTCTACATGTATCAACTACATGCAGGTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCGGTAATTGTCCTTCCATTGTCGTTATCTCACAATATGCCCGTCCAGAAAGTATTAAAAAAGACTCACTAAGAAATTTCTAGATAGTTTGAATCATTAACAATATAGAGTTTTACATATTCTTTTAGCTGTTTTACTGGATTGTAAATTTTTTTTGCTTTACAGTTCAAACTTTGCAGCTTCTGTTTCTGGCTTTACCTTGTTGACATGTTTGGTTTCTCAGTAGGCAAACAATGTGAAGGAGTTGGATTTTAAACAATTTTCTAATATGCAGGAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAGGTATGTACATTTACATGCTTTCATTTATACAATAGAATGGTAATGCAGTATTCTCATATATGCTTATATGCCTTTATTAAGAACATACTTCGACGTTTCTTAACTGAAGAAATCCTTATCATAGAATAATGAGGATTTGTGGAAATTGCTGCTAGACAATCCTAGGTTAGTGTAGGCATTATTATTAATGCTCTTTCCAGGTGAAAATTGTTTGGACCGTTGTGTTGAGTATGGTTCTAATATTACTGTCGGCACAGAACATCAGAGTCAAAACTACTTTTACTTCAGGTTTACAACCAAAATAAGTTTTCATTACATTGTTTGTATCACCTCGTCTGCAACTTAAAGATGATTGAGTCCAGTTTCTACAAGCCAACCATGGTTCTCATATTAGGAGCTATTGAGCTTCTCGAAATCATATATATGCTTTCTTTCGTTGGTCTTTTGCCATGCTTTCTATTCGACAGTTTTCAATGTTCAGAATCATTTCTATCGTTAGTTTGCTTTGCATAAATGATTCTGAAATTTCAGGTGTTTGTATTTCAATGTTATAGGTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTTATTGAGTGCTTTAATTTTTTAATAGTGTGGTTGTCCCTTTTCCTGTATTTTACATCTCATTTGTTTATTTAATTGAAAGATAATTTTCTCAATTGTTGGATCAGTCTACACGCGATTGATTCAATTTTTGATGAAATGACTCTAAAAGTTCTACTTTTAACTTTGATTACGGCAACTTTTGAGAGGAAATCATAAACATAATTTTCATTTCCTTAAGGTTGTCAATTTGCAAATTAGCTAAGGTGAGAAAAAGTGTGTCAGTTAACTTTTGAAATGGGAAATAACAAGGACCTGAAAGATTGAAAACTTACACCCAAATGTATTAAAATACCCTTTTATCACGTGGTTTTAAACATATCACGTGGAAAATTAAAGATAAAGTATTTTAAAAAAAGAAAGGGATTATTCTTTTTGAAACAGACTAAAAAAAATAGGATC</genome_strand>
        <mrna_strand>CTTTCTTTACACAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG...............................................................................................................................................................................................................................................................................GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTTATTGAGTGCTTTAATTTTTTAATAGTGTGGTTGTCCCTTTTCCTGTATTTTACATCTCATTTGTTTATTTAATTGAAAGATAATTTTCTCAA........................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E257786" ref_strand="+" ref_description="SGN-E257786 [cLEG-39-A11]">
      <seq>taagagctagacttgtttatgggagcccaaatatgaacagagctgtgagctttgagtacatgaatcgtcagttggtctggaatgaattctcggaactgctgctcttgcttcttccccttctcaattcagcatctgtcaagagtttccttcgtccattctcaaaggacaaatcttcagattcttcagtagatgaaactttatgccccatctgccagggaaccccatcaattccatttgtagctatcccttgtcagcataggtactgttactactgtcttcaaacaaggtgctctgcatcttcatcgtttcgttgccccagatgtggtgaaccagttgctgctatgcaacggcatggtggtttagtcagcaacattcctcagaaacaatgattgttctgcaaagtgattgaaatgataaaaaaaagggaagctaagttaaactatagatcaaaagttgctcaaaagacaacttgacaatgaaactaggtatctagattccttaataaagcttattgttctgctttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="17615" stop="19563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17915" g_stop="18006" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18007" i_stop="18277" i_length="271">
            <donor d_prob="0.230" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18278" g_stop="18444" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="259" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18445" i_stop="18998" i_length="554">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18999" g_stop="19262" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="523" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="535"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E257786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17915" e_stop="18006"/>
          <exon e_start="18278" e_stop="18444"/>
          <exon e_start="18999" e_stop="19262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCGGTAATTGTCCTTCCATTGTCGTTATCTCACAATATGCCCGTCCAGAAAGTATTAAAAAAGACTCACTAAGAAATTTCTAGATAGTTTGAATCATTAACAATATAGAGTTTTACATATTCTTTTAGCTGTTTTACTGGATTGTAAATTTTTTTTGCTTTACAGTTCAAACTTTGCAGCTTCTGTTTCTGGCTTTACCTTGTTGACATGTTTGGTTTCTCAGTAGGCAAACAATGTGAAGGAGTTGGATTTTAAACAATTTTCTAATATGCAGGAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAGGTATGTACATTTACATGCTTTCATTTATACAATAGAATGGTAATGCAGTATTCTCATATATGCTTATATGCCTTTATTAAGAACATACTTCGACGTTTCTTAACTGAAGAAATCCTTATCATAGAATAATGAGGATTTGTGGAAATTGCTGCTAGACAATCCTAGGTTAGTGTAGGCATTATTATTAATGCTCTTTCCAGGTGAAAATTGTTTGGACCGTTGTGTTGAGTATGGTTCTAATATTACTGTCGGCACAGAACATCAGAGTCAAAACTACTTTTACTTCAGGTTTACAACCAAAATAAGTTTTCATTACATTGTTTGTATCACCTCGTCTGCAACTTAAAGATGATTGAGTCCAGTTTCTACAAGCCAACCATGGTTCTCATATTAGGAGCTATTGAGCTTCTCGAAATCATATATATGCTTTCTTTCGTTGGTCTTTTGCCATGCTTTCTATTCGACAGTTTTCAATGTTCAGAATCATTTCTATCGTTAGTTTGCTTTGCATAAATGATTCTGAAATTTCAGGTGTTTGTATTTCAATGTTATAGGTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTT</genome_strand>
        <mrna_strand>TAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG...............................................................................................................................................................................................................................................................................GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E620245" ref_strand="+" ref_description="SGN-E620245 [70944]">
      <seq>ctgctatgcaacggcatggtggtttagtcagcaacattcctcagaaacagtgattgttctgcaaagtgattgaaatgataaaaaagggatgctaagttaaactatagatcaaaagttgctcaaaagacaacttgacaatgaaactatgtatctagattccttgataaagcatattgttctgctttaaaaaaacaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="18776" stop="41200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19076" g_stop="19263" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19264" i_stop="22521" i_length="3258">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22522" g_stop="22538" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="203" r_length="17" r_score="0.765"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22539" i_stop="22859" i_length="321">
            <donor d_prob="0.045" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22860" g_stop="22881" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="225" r_length="22" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E620245" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19076" e_stop="19263"/>
          <exon e_start="22522" e_stop="22538"/>
          <exon e_start="22860" e_stop="22881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTTATTGAGTGCTTTAATTTTTTAATAGTGTGGTTGTCCCTTTTCCTGTATTTTACATCTCATTTGTTTATTTAATTGAAAGATAATTTTCTCAATTGTTGGATCAGTCTACACGCGATTGATTCAATTTTTGATGAAATGACTCTAAAAGTTCTACTTTTAACTTTGATTACGGCAACTTTTGAGAGGAAATCATAAACATAATTTTCATTTCCTTAAGGTTGTCAATTTGCAAATTAGCTAAGGTGAGAAAAAGTGTGTCAGTTAACTTTTGAAATGGGAAATAACAAGGACCTGAAAGATTGAAAACTTACACCCAAATGTATTAAAATACCCTTTTATCACGTGGTTTTAAACATATCACGTGGAAAATTAAAGATAAAGTATTTTAAAAAAAGAAAGGGATTATTCTTTTTGAAACAGACTAAAAAAAATAGGATCATTCGTGGGAGTACTATTTATTGAGGAATTAACCCTTATTCTACTATTTATTATAGGAGCTAGTTATAAATAATACGAAAGCAGCCCTTACATAATCAGAACTTAAGCCTAGAATGCAATTAAGGTCGGCTAAGCATGCAATTTGGCCTCCTATTCCTAATCTTCTATTGGAAACATCAACTCAAGTCTATTGTGAACCTTCAGCATATGATTTCAGATTTATCTCAAGTTAGGAATTTTATTCAGATATCTAATTTGAATTTTTTAAGTTGTATAAAAATTTCAATCAGTGAAAACTAAAAACTATCAAAACATCACAATTCGTACACTCTCAAATGAGGAAATCATAGTTCATTTAATATATTGAAAAATCCTAAAAGTGTCACATTAATAAATTGTATATATTCATGTTGTTTTGTAGAGATATTGACAATTACATGCTATTACAAATTTTTAGATACACATAATTTTCATAAAGATTTATCAGTCCAAAAAAATCAATTATAACAATAACTATCTATTCTCTAATATAATCTTTTCACAAAAATATAATTATTGGTCAAGTTTACATTAAAAAAGTATTGAAATCACAATATGAAATTGAAATCCCACATTTGGAGAATTTGGAATAAGAACTTGAAATTAAAGTTTATTTTGTAAAGATTTCAACAAGAACAAGATTAATTTCAAATCAGAACTTCAAATTACGGTCCAATTCCTATGTCCAAAAGTCTAATTATTGAGGGAAGAAATAAGCAAAATGTTTCATTTCCTTCAGGTTGTCAAGTTGCAAAAAAAATAAATAAATATTGTTTCAGTGAACTTTTGAAATGTCTCAGAATATTTTACGATGACATTCTCTTGTGAATCTATCAATAATATTTGAATTCCTTGGGACTCCTGATTGATAATTTTCGAATTCAAGAACATGTTATTAACAAGGAATTAAGTGAAACTATTCATTCATTTCATAAAGTGAACAAGTATCGTTGGATATTCAAAAATAGTATAGTGAACAACTATTATTGAACGGAGAGAGTAGAAAATAGATATGAATTTTGATAAAATATAGTATGTAGGGAATAACTAGAATAAATCCAAATCACCTCCTAATTCAATCAATATAGATTATAGGCACCTAGACGAATAGAATCCTCTAGAGGAAAAGTATTTCTCTTGCAAATCTTTAGGCAAAGTTCATAGGCAATAAAAGGAGTTTCACCCATTAGCTACTTAATACAACTATATATATGCTTACAAAACACTTTTTCACTTTTATTTTTTGGAATTATATTAAAAATCGAAGACTATCTAATGAAAAGTTTTCTCATAGTTAAAATAGCTCATTAAAAGAAAGAGTGCACGATTTTGACCAGGCACGTATCGAAGGAGCAAAGGAGTAGGTAGTTAATGCTCGGATCAACAGGAAGGCGAACGAAAGTGAACTTGCATCGAATCAGCGTACTATGAAATCGAAGATTGAAGATGATTTCCAATAAGCGAAAAGTTATTTGGACATAAAATTGTTATAAATTTTTCAAGATGAAATCCACAAAAGTCATTTTATAATTTCACTCTTAGGTGTTTGGATTGACATAAAAGTTGGTCAAACCTACTTTTATTCTTTTAAGTTAGTTTTTAATTTTTGAAAATTTTTGACAAACTTTAAAATAAGTCAGAAATTGTTTGACAAGGTTAAAAATAACGTATAATAAATTAAAAATCAAAAGTAGACATTCCTATTTTTTTTTAAACTTTAAAATCATTTAAATTTGACCTTTTACTTTAACTTTTAAGACAATCAAAACGGGCTCTAAATCACTCACAAGAATTCTAAAATTTCAAATCTCATTTTCGAAAACAAATATTGTACTGTTTTTTTCTTCAAATTTCACAGTTCTTATGTCTAAACGCCCATGAATTTACCGGAGATAGCTATTAATTACAAATATAGCCCTTATATAATTAAATGTAAGACTAAAATGAGATTAAGATCAGCTAAAACATGCAATGTGGCTGTCTCTTCTAAATATAAATATATATCATCCATTAATTGATCATTCACTTAAGCCTATAATGAACTTCAGAACTTAATCTTCCAAAGCTCCTTGAGCATGACTCTTGATAAACTATCATTCTCCCTTTCTTTGGAACAAAATCGCCCTGTAGCTTTTCGAGGATTATCCAAACTTTATTAAGAAGCTAAATCGAGGGTATCTAATAAAATAGTCGAGACATGTAGGCAAATTCGATACAAATATTAAATATTGCTATCGAAAAAGAAGAGATCAGAACAATAAAGACTATGAGCCCTTCTCTGATTACTATGGTAAACATAACCCCAACACAACATGTTTTACATAGTTACTATAGTTTAACTTGTTATAACAGATAATACTCTTTGATAACCATAACATAAATGGAACATTTAATATAAAAAGGTAAGATGCATTATTAATACAATCAAATTTTTCTATAACAAAATACGATTGATCGATAGAATATCTATTATTAATACAATCAAATTTCTCTATAACAAAATACGATATTCTTTGTTAGATGTGATAAAAGAGCGTACTCCTTTTTTCACAAGATAAGATCAGAGAATGCAGCTGTATAGCTAGTAACAGAAAAGAACAATCCTTTAATTAGTTACCACTCTTAAGTCAATGAAGTTTGAAAATAAATTTTTTTAAAATAACACCACGAGCATTTGTTTTTGGGCCTGACCCACCAGCCTTTTTCTGCCTCCACTTTACAATAAAGCTAATTAAAGCAAGAAATTAAAAAAATAAAAGAAGGTATCAATAAGAGGGAAAACAAAATACAATAACAAAGGTTCTCAACCCCACAAGTAAGAAATAATCCTACTCTCTCCGTCTCATTTTATATCATATTTTTTTATTTTCAGTTTATTCGAAAAAATGTCACTTTACATTTATAATCATACAAATATCTAAGGATTGTTTTTAGAGCGCATATTTTAAAAATCTTTCTTTAATATCATGTCAAGTCAAATATTGTCACGTAAAATAAGACTGAGAAATTACTATATAACAAAGTAATGTTTACTCTCTTGACAATGATATATATATTATATATATATATATATATAATACAGCCTTGAAAGGCCTTCAAGAAAGTCTCCTTTTTTTGCACAAAAAAAAGGAAAAAAAAAATA</genome_strand>
        <mrna_strand>CTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAGTGATTGTTCTGCAAAGTGATTGAAATGAT--AAAAAAGGGATGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTATGTATCTAGATTCCTTGATAAAGCATATTGTTCTGCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................AAAAAAAAAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E326308" ref_strand="+" ref_description="SGN-E326308 [cTOC-14-I4]">
      <seq>agagatacaggagaagaaagattgcaaaatttgtgttgagagaagagggtgaagaataatcattagtcgagtagcaaatgatggctggaaaccctactaattggtggagcatgatcatgaatggaaacatgcatccacaattatctcatgatcatgatcaacataattcttcttcttctaattctaattctaattcttcacatttttatggagctcataatccaaatcaagattttcctcgttcattgagccaacttcttatgaatggattttgtggtgatgaagaaaagtttggtattagtccttttcatgccgccgggaattcggaagaccaaagtttgaattccgtccatccaacatcatcaacagctaattttagggttcctgttgctgatgtaaagccagaattgtatcatcatcatcatggccacaacgaatttcaaacatcttcatcgctacaagaaaaactcgaattagatactgatcattttaccaggcctttaattgcttctaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="22616" stop="24102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22916" g_stop="23177" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23178" i_stop="23547" i_length="370">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23548" g_stop="23802" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="517" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E326308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22916" e_stop="23177"/>
          <exon e_start="23548" e_stop="23802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATACAGGAGAAGAAAGATTGCAAAATTTGTGTTGAGAGAAGAGGGTGAAGAATAATCATTAGTCGAGTAGCAAATGATGGCTGGAAACCCTACTAATTGGTGGAGCATGATCATGAATGGAAACATGCATCCACAATTATCTCATGATCATGATCAACATAATTCTTCTTCTTCTAATTCTAATTCTAATTCTTCACATTTTTATGGAGCTCATAATCCAAATCAAGATTTTCCTCGTTCATTGAGCCAACTTCTTATGTAAATATACAAAACCTTACCCTCTTTCTCTCTCTTTAATTTATTCGTCATGTTTAATCACCTAGCTTGGTTCTAAAGATAATTCAGAATTCGAACTTTATTATATACACATATTATAGGGTATGTAGCTCCTTACCTAGAAAATTTTGATAACTTTCCCTTTGGTTTGAGCTAATAATTGTCATCTTCTTGCTATGAGAAAAAGAAGGATACAAGATCTAGATTAATTAGTGTGATTTTACCAAAGATATATATATATATATTTGATTTGTTTTTTTACTTTTACATAATAGTTCGAGCAGAAAGTAATAAGTTCAATCAGATTTGTATTTTTTTTTCCTTTGTAATTCTCAAATATGTTACTCTACAGGAATGGATTTTGTGGTGATGAAGAAAAGTTTGGTATTAGTCCTTTTCATGCCGCCGGGAATTCGGAAGACCAAAGTTTGAATTCCGTCCATCCAACATCATCAACAGCTAATTTTAGGGTTCCTGTTGCTGATGTAAAGCCAGAATTGTATCATCATCATCATGGCCACAACGAATTTCAAACATCTTCATCGCTACAAGAAAAACTCGAATTAGATACTGATCATTTTACCAGGCCTTTAATTGCTTCTAATTG</genome_strand>
        <mrna_strand>AGAGATACAGGAGAAGAAAGATTGCAAAATTTGTGTTGAGAGAAGAGGGTGAAGAATAATCATTAGTCGAGTAGCAAATGATGGCTGGAAACCCTACTAATTGGTGGAGCATGATCATGAATGGAAACATGCATCCACAATTATCTCATGATCATGATCAACATAATTCTTCTTCTTCTAATTCTAATTCTAATTCTTCACATTTTTATGGAGCTCATAATCCAAATCAAGATTTTCCTCGTTCATTGAGCCAACTTCTTAT..................................................................................................................................................................................................................................................................................................................................................................................GAATGGATTTTGTGGTGATGAAGAAAAGTTTGGTATTAGTCCTTTTCATGCCGCCGGGAATTCGGAAGACCAAAGTTTGAATTCCGTCCATCCAACATCATCAACAGCTAATTTTAGGGTTCCTGTTGCTGATGTAAAGCCAGAATTGTATCATCATCATCATGGCCACAACGAATTTCAAACATCTTCATCGCTACAAGAAAAACTCGAATTAGATACTGATCATTTTACCAGGCCTTTAATTGCTTCTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E618205" ref_strand="+" ref_description="SGN-E618205 [68880]">
      <seq>caacgaatttcaaacatcctcatcactgcaacaaaaactcgaattagatactgatcattttaccagacctttaattgcttctaattggtctcaacaagatttgtcttcaccagctagctcttgtattacaacaggtttaagtcataaccttttgaatttctctaacaacaaaggggaacataagcatcaacatccagatcataattcaactgagtgtaacagcacaagcagtggtgggattagtaagaaggctagggttcaacaatcttcagctcaaccatctctaaaggtaagaaaggagaagctaggagatagagtaacatcactccaccaacttgtttctccatttggaaagactgatacagcctccgtcctatcagaagctattggctacatcagattccttcaggctcaaattcaggcattaagctcaccatacttgggcaatgcatcaggaagcatgggtcacattccccaacaatcactgaatttttggatggtaattttctgaaaaggaggccagcaagtaagcaggattctcagcacaaagcgatggatttaaggagtacagggttgtgcttggttcctatttcttgcatggcaaatataggaagtgacaccggcgccgattactgggctcccagctctcggaggaggattttgatgttacaagtgtttattctgattggatttaagttatatacactgacagtataaaaataccgagacgtcaacaaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="23416" stop="27418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23716" g_stop="23929" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23930" i_stop="24219" i_length="290">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24220" g_stop="24294" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="289" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24295" i_stop="24663" i_length="369">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24664" g_stop="24729" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="355" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24730" i_stop="25302" i_length="573">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25303" g_stop="25368" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="421" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25369" i_stop="25862" i_length="494">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25863" g_stop="25931" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="489" r_length="68" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25932" i_stop="26653" i_length="722">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.886" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26654" g_stop="26698" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="534" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26699" i_stop="26918" i_length="220">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26919" g_stop="27118" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="742" r_length="208" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E618205" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23716" e_stop="23929"/>
          <exon e_start="24220" e_stop="24294"/>
          <exon e_start="24664" e_stop="24729"/>
          <exon e_start="25303" e_stop="25368"/>
          <exon e_start="25863" e_stop="25931"/>
          <exon e_start="26654" e_stop="26698"/>
          <exon e_start="26919" e_stop="27118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGAATTTCAAACATCTTCATCGCTACAAGAAAAACTCGAATTAGATACTGATCATTTTACCAGGCCTTTAATTGCTTCTAATTGGTCTCAACAAGATTTGTCTTCACCAGCTAGCTCTTGTATTACAACTGGGTTAAGTCACAACCTTTTGAATTTCTCTAACAACAAAGGGGAACATAAGCATCAACATCCAGATCATAATTCAACTGAGGTAAAGAAAAAAAGGGTAATTAATTAAAAAAAGTTGATTTATCCATTTCATCTTACATTTGTTATAAGTCAATGGATTCATCATTAAAATTTCAAAAAAGGGGAAAGTGATTTGTAGAAAAATGACAAAATTAATTCATGATTAGCATTACGAATTTAATCAATACAAAAAAGTAGAGATGCTTAGTGATTTTCATAATGAAAGTTTTAGCTAAGCATTAAGTTTTTGAATTTTTTTACCCTTTTTTGTTTACTTTATTTACTTTTTTTTTTGTATGTATGTATTAAAAGTGTAACAGCACAAGCAGTGGTGGGATTAGCAAGAAGGCTAGGGTTCAACAATCTTCAGCTCAACCATCTCTAAAGGTAATTGTTATTACTATATCTCTCTTCCTTTCCTATCTAATTTTTGTAAACCCTTGCGCTTGACCATATTTTTTCACTTTTTCCTAGAGTTCAACTCTGAAAAACATGTTTAGTCATAAAATTTTAAAACTTCAACTCGAATTCAAATTTTTCAAAAGTTCAACAAAAAAAAGTGTCTTCACTTTTTTCGTAATTAATTTGTGTTCATAGCCAAACACAATTTCACTTTGAAAAACAAAAAACTTTTTTTATTTTCAAATTTTACAATAAAACATGATCAAACGCCCATAATATCACCGAAAACTATGGTCTACCTAGCAAACTAAAGTCCTTAATTAACTTTTTTTTTTTTTTGCAATTTCTGTGCAGGTAAGAAAGGAGAAGCTAGGAGATAGAGTAACATCACTCCACCAACTTGTTTCTCCATTTGGAAAGGTAAAGTTACTAGCTAGGTTGTAACTTTTTACACTTAGAATGAGTAAATTTTTTTTTTTCACATCATTAGTTTAAGTTGACTTCTATAGATTAATCTATAAGTAATGTATACAATCAACTCAATAATTTTCTATAATAAGTTAAAATTCATCCATATATTAGTCACACTGAAATTAAAACACTAACCAAACAAGGTCCGAAACGAATTCACACTAATCACTTGATAATTACTAGTGTGATATGTTAAACTTATTTACAATGGTGTAATTGCATAAGATCACATAACTTGTACTGCGTATTAATTAGTCTATTTCCCATGCTGATGGCAGTACTGGATCACTGAAAAGAATAACGTTGAAATAGTAGTACTATATAAATAGACTAATTAATTTTTTTTGGTAGATAACACATTTTTTTATTTTTTTATTTTTTGCTTTAGTGATCTTACCCATGAAGTTGTGTCTAAATTAAATAAAGTTTTTCAACACAAAAAGGAAAAGAGAAAAAGAAGAATATATGGCTTTAAATTTGTGTTGGTGTATGAGACAGACATGTCATGTTTCTCTTTTGCAGACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAGGTCTTCCTTTTTTTTTTTTTCATTCATAAGCATGCTGCAAATATATTCATTGATTTTGACATGTTGCATTATACGTATATTCTCCGTTTCAAATAGAATGATTCACGGTGTCTTTTAGTCTGTCTAAAAATGGTATGATATGATCATTTGCACTTGACTGTTTAAACTCATAAGATTAAGCGATATTTTGTTACATTTAACATAACATTAATTTAACATCATAATTAAGAGTAAAAAAATCCTTATTTTCTTAACCTATATGTCAAGTCAAAATAGATTATTCTATTCGAAATGAAGAAATATTATTATTCACCTTATTATCTTTTAGATTATTTTATCTTACTTATTACGAATCGATCGTCCTATATATATATGTTACTAACTAATTATAAATATGTGAAAAATGTTATATATTACTATGAACATATATATATCCATTGATATTATACATGAATTTTTATCAAATTTTTTTTTTGGTGCACGTATATATGCAGGCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAATGTAAGAAATTTATTCTTTACACATTTTCCAATGCACGACCAAGATTCCTCATCAGTTTCTCATATTTATACACGTGCGACTGACTAATCATATCTGATTAATTCGTTAATTATCAAGATTAATCTTTTAACTTTTCTTGAATTCAAGAAAATTAAGTATTATTATTATTATTATTTACTTGATATACAAATGCCTACTTTATTGGATCCCTCACTAGTACACCAAAAGCTAGTTATGTGAGGCTTTACATTTGTAAAGCAACAGTCATATATATCAAAGTGTTCTGTTCATAAAAAGTGACCGCCCTAAAGGTGAAATGATCTTCTCAACAATAATTGCACTTCTTCAACTGAGTTTGGTAAAAACAAACTCTAATGATCTATTTTACATTGCGTAGTTTGACTGAGCATAAAATTTAAGAATATAAAAAATACGTCTAATTTATGTGTTCTTTAATTAATTAAAGTGTAGTAACATACAAAATGTAGCCTTTTAAGTAGTGGTTTAAATATGATTTCATGCCTATAAGGGAGTGTTAATGGAAATTTTATCACCAAAAGTTTACATAATATAGAAATATGACGTTCTTTTTTAAAACATACTAGAAGAGAGAAACGGATGGAGTAGCTTAGTCAAGAAAGGGGCTAAAATTTTGAATTTGGATCCATTATAACTTTCTTGTCCTTAGATACTAATTTGAATTCTAATTCCTTTTCATCTAGTTTTTGGATGGTAATTTTCTGAAAAGGAGACCAGCAAATAAGCAGGTACGGTATAATTCTATTCAATACATGTACATGCATGCCCCATTACTAGTGTGGCAATTAACAAATATGTTAAGTTTTACATTATCGTCAAATAATTTAACATGTTATAGCAGGTTACTTATTATTTGTTGTATGATGTTACTAATCAATGCTACATACTAAATTGAGTTGCCTCTAATTATCTTTTAATCGAGCTGATTTTAGTTTTCATTCTCTTTAGGATTCTCAGCACAAACCGATGGATTTAAGGAGTAGAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGATACCGGCGCCGATTATTGGGCT-CCAGCTCTCGGAGGAGGATTTTGATGTTAC--GAGCTGATT-GGA-T---TTTAAGTTATATACACTGACAGTGTAAAAATACTGAGACGACAACAAACTGA</genome_strand>
        <mrna_strand>CAACGAATTTCAAACATCCTCATCACTGCAACAAAAACTCGAATTAGATACTGATCATTTTACCAGACCTTTAATTGCTTCTAATTGGTCTCAACAAGATTTGTCTTCACCAGCTAGCTCTTGTATTACAACAGGTTTAAGTCATAACCTTTTGAATTTCTCTAACAACAAAGGGGAACATAAGCATCAACATCCAGATCATAATTCAACTGAG..................................................................................................................................................................................................................................................................................................TGTAACAGCACAAGCAGTGGTGGGATTAGTAAGAAGGCTAGGGTTCAACAATCTTCAGCTCAACCATCTCTAAAG.................................................................................................................................................................................................................................................................................................................................................................................GTAAGAAAGGAGAAGCTAGGAGATAGAGTAACATCACTCCACCAACTTGTTTCTCCATTTGGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGGATGGTAATTTTCTGAAAAGGAGGCCAGCAAGTAAGCAG............................................................................................................................................................................................................................GATTCTCAGCACAAAGCGATGGATTTAAGGAGTACAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGACACCGGCGCCGATTACTGGGCTCCCAGCTCTCGGAGGAGGATTTTGATGTTACAAGTGTTTATTCTGATTGGATTTAAGTTATATACACTGACAGTATAAAAATACCGAGACGTCAACAAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E602780" ref_strand="-" ref_description="SGN-E602780 [55852]">
      <seq>agggggaacataagcatcaacatccagatcctaatttcaactgagtgtaacagcacaagcagtggtgggattagtaagaaggctagggttcaacaatcttcagctcaaccatctctaaaggtaagaaaggagaagctaggagatagagtaacatcactccaccaacttgtttctccatttggaaagactgatacagcctccgtcctatcagaagctattggctacatcagattccttcaggctcaaattcaggcattaagctcaccatacttgggcaatgcatcaggaagcatgggtcacattccccaacaatcactgaatgattctcagcacaaagcgatggatttaaggagtagagggttgtgcttggttcctatttcttgcatggcaaatataggaagtgacaccggcgccgattactgggctccagctctcggaggaggattttgatgttacaagtgtttattctgattggatttaagttatatacactgacagtataaaaataccgagacgtcaacaaactgatgataagacggatcggagcctctgtgtcctcatggaatgaatgatataacatcacaaagcagtcattctcagtatggaagtcatcagagctgactgtttgtgatgctattttgcatttgaaatcgggtcaaagataaagtggtattgtccaatgtacaatatggtcctattttcttgaatttcatgaataatcatactaccttactaggtagttcataagtgttgtatatgtaacttggaaatccataggtacaatcaacatatcgtttcaaaaaatttatctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="23588" stop="27701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23886" g_stop="23929" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23930" i_stop="24219" i_length="290">
            <donor d_prob="0.991" d_score="0.91"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24220" g_stop="24294" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="120" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24295" i_stop="24663" i_length="369">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24664" g_stop="24729" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="186" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24730" i_stop="25302" i_length="573">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25303" g_stop="25368" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="252" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25369" i_stop="25862" i_length="494">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25863" g_stop="25931" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="321" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25932" i_stop="26918" i_length="987">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26919" g_stop="27401" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="814" r_length="493" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E602780" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602780" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23886" e_stop="23929"/>
          <exon e_start="24220" e_stop="24294"/>
          <exon e_start="24664" e_stop="24729"/>
          <exon e_start="25303" e_stop="25368"/>
          <exon e_start="25863" e_stop="25931"/>
          <exon e_start="26919" e_stop="27401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGAACATAAGCATCAACATCCAGATCATAA-TTCAACTGAGGTAAAGAAAAAAAGGGTAATTAATTAAAAAAAGTTGATTTATCCATTTCATCTTACATTTGTTATAAGTCAATGGATTCATCATTAAAATTTCAAAAAAGGGGAAAGTGATTTGTAGAAAAATGACAAAATTAATTCATGATTAGCATTACGAATTTAATCAATACAAAAAAGTAGAGATGCTTAGTGATTTTCATAATGAAAGTTTTAGCTAAGCATTAAGTTTTTGAATTTTTTTACCCTTTTTTGTTTACTTTATTTACTTTTTTTTTTGTATGTATGTATTAAAAGTGTAACAGCACAAGCAGTGGTGGGATTAGCAAGAAGGCTAGGGTTCAACAATCTTCAGCTCAACCATCTCTAAAGGTAATTGTTATTACTATATCTCTCTTCCTTTCCTATCTAATTTTTGTAAACCCTTGCGCTTGACCATATTTTTTCACTTTTTCCTAGAGTTCAACTCTGAAAAACATGTTTAGTCATAAAATTTTAAAACTTCAACTCGAATTCAAATTTTTCAAAAGTTCAACAAAAAAAAGTGTCTTCACTTTTTTCGTAATTAATTTGTGTTCATAGCCAAACACAATTTCACTTTGAAAAACAAAAAACTTTTTTTATTTTCAAATTTTACAATAAAACATGATCAAACGCCCATAATATCACCGAAAACTATGGTCTACCTAGCAAACTAAAGTCCTTAATTAACTTTTTTTTTTTTTTGCAATTTCTGTGCAGGTAAGAAAGGAGAAGCTAGGAGATAGAGTAACATCACTCCACCAACTTGTTTCTCCATTTGGAAAGGTAAAGTTACTAGCTAGGTTGTAACTTTTTACACTTAGAATGAGTAAATTTTTTTTTTTCACATCATTAGTTTAAGTTGACTTCTATAGATTAATCTATAAGTAATGTATACAATCAACTCAATAATTTTCTATAATAAGTTAAAATTCATCCATATATTAGTCACACTGAAATTAAAACACTAACCAAACAAGGTCCGAAACGAATTCACACTAATCACTTGATAATTACTAGTGTGATATGTTAAACTTATTTACAATGGTGTAATTGCATAAGATCACATAACTTGTACTGCGTATTAATTAGTCTATTTCCCATGCTGATGGCAGTACTGGATCACTGAAAAGAATAACGTTGAAATAGTAGTACTATATAAATAGACTAATTAATTTTTTTTGGTAGATAACACATTTTTTTATTTTTTTATTTTTTGCTTTAGTGATCTTACCCATGAAGTTGTGTCTAAATTAAATAAAGTTTTTCAACACAAAAAGGAAAAGAGAAAAAGAAGAATATATGGCTTTAAATTTGTGTTGGTGTATGAGACAGACATGTCATGTTTCTCTTTTGCAGACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAGGTCTTCCTTTTTTTTTTTTTCATTCATAAGCATGCTGCAAATATATTCATTGATTTTGACATGTTGCATTATACGTATATTCTCCGTTTCAAATAGAATGATTCACGGTGTCTTTTAGTCTGTCTAAAAATGGTATGATATGATCATTTGCACTTGACTGTTTAAACTCATAAGATTAAGCGATATTTTGTTACATTTAACATAACATTAATTTAACATCATAATTAAGAGTAAAAAAATCCTTATTTTCTTAACCTATATGTCAAGTCAAAATAGATTATTCTATTCGAAATGAAGAAATATTATTATTCACCTTATTATCTTTTAGATTATTTTATCTTACTTATTACGAATCGATCGTCCTATATATATATGTTACTAACTAATTATAAATATGTGAAAAATGTTATATATTACTATGAACATATATATATCCATTGATATTATACATGAATTTTTATCAAATTTTTTTTTTGGTGCACGTATATATGCAGGCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAATGTAAGAAATTTATTCTTTACACATTTTCCAATGCACGACCAAGATTCCTCATCAGTTTCTCATATTTATACACGTGCGACTGACTAATCATATCTGATTAATTCGTTAATTATCAAGATTAATCTTTTAACTTTTCTTGAATTCAAGAAAATTAAGTATTATTATTATTATTATTTACTTGATATACAAATGCCTACTTTATTGGATCCCTCACTAGTACACCAAAAGCTAGTTATGTGAGGCTTTACATTTGTAAAGCAACAGTCATATATATCAAAGTGTTCTGTTCATAAAAAGTGACCGCCCTAAAGGTGAAATGATCTTCTCAACAATAATTGCACTTCTTCAACTGAGTTTGGTAAAAACAAACTCTAATGATCTATTTTACATTGCGTAGTTTGACTGAGCATAAAATTTAAGAATATAAAAAATACGTCTAATTTATGTGTTCTTTAATTAATTAAAGTGTAGTAACATACAAAATGTAGCCTTTTAAGTAGTGGTTTAAATATGATTTCATGCCTATAAGGGAGTGTTAATGGAAATTTTATCACCAAAAGTTTACATAATATAGAAATATGACGTTCTTTTTTAAAACATACTAGAAGAGAGAAACGGATGGAGTAGCTTAGTCAAGAAAGGGGCTAAAATTTTGAATTTGGATCCATTATAACTTTCTTGTCCTTAGATACTAATTTGAATTCTAATTCCTTTTCATCTAGTTTTTGGATGGTAATTTTCTGAAAAGGAGACCAGCAAATAAGCAGGTACGGTATAATTCTATTCAATACATGTACATGCATGCCCCATTACTAGTGTGGCAATTAACAAATATGTTAAGTTTTACATTATCGTCAAATAATTTAACATGTTATAGCAGGTTACTTATTATTTGTTGTATGATGTTACTAATCAATGCTACATACTAAATTGAGTTGCCTCTAATTATCTTTTAATCGAGCTGATTTTAGTTTTCATTCTCTTTAGGATTCTCAGCACAAACCGATGGATTTAAGGAGTAGAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGATACCGGCGCCGATTATTGGGCTCCAGCTCTCGGAGGAGGATTTTGATGTTAC--GAGCTGATT-GGA-T---TTTAAGTTATATACACTGACAGTGTAAAAATACTGAGACGACAACAAACTGATGATAAGACGTATCGGAGCCTCTGTGTCCTCATGGAATGAATGATATAACATCACAAAGCAGTCATTCTCAGTATGAAAG---TCAGAGCTGACTGTTTGTGATGCTATTTTGCATTTGAAATCGGGTCAATGATAAAGTGGTATTTTCCAATGTACAATATGGTCCTATTTTCTTGAATTTCATGAATAATCTTACTACCTTACAAGGTAGTTCATAACTGTTGTATATGTAACTTGGAAATCCATAGGTACAATCAACATATCGTTTCGAAAATTTTATCTTTC</genome_strand>
        <mrna_strand>AGGGGGAACATAAGCATCAACATCCAGATCCTAATTTCAACTGAG..................................................................................................................................................................................................................................................................................................TGTAACAGCACAAGCAGTGGTGGGATTAGTAAGAAGGCTAGGGTTCAACAATCTTCAGCTCAACCATCTCTAAAG.................................................................................................................................................................................................................................................................................................................................................................................GTAAGAAAGGAGAAGCTAGGAGATAGAGTAACATCACTCCACCAACTTGTTTCTCCATTTGGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCAGCACAAAGCGATGGATTTAAGGAGTAGAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGACACCGGCGCCGATTACTGGGCTCCAGCTCTCGGAGGAGGATTTTGATGTTACAAGTGTTTATTCTGATTGGATTTAAGTTATATACACTGACAGTATAAAAATACCGAGACGTCAACAAACTGATGATAAGACGGATCGGAGCCTCTGTGTCCTCATGGAATGAATGATATAACATCACAAAGCAGTCATTCTCAGTATGGAAGTCATCAGAGCTGACTGTTTGTGATGCTATTTTGCATTTGAAATCGGGTCAAAGATAAAGTGGTATTGTCCAATGTACAATATGGTCCTATTTTCTTGAATTTCATGAATAATCATACTACCTTACTAGGTAGTTCATAAGTGTTGTATATGTAACTTGGAAATCCATAGGTACAATCAACATATCGTTTCAAAAAATTTATCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E614003" ref_strand="+" ref_description="SGN-E614003 [63784]">
      <seq>gtgggattagtaagaaggctagggttcaacaatcttcagctcaaccatctctaaaggtaagaaaggagaagctaggagatagagtaacatcactccaccaacttgtttctccatttggaaagactgatacagcctccgtcctatcagaagctattggctacatcagattccttcaggctcaaattcaggcattaagctcaccatacttgggcaatgcatcaggaagcatgggtcacattccccaacaatcactgaattttttggatggtaattttctgaaaaggaggccagcaagtaagcaggattctcagcacaaagcgatggatttaaggagtagagggttgtgcttggttcctatttcttgcatggcaaatataggaagtgacaccggcgccgattactgggctccagctctcggaggaggattttgatgttacaagtgtttattctgattggatttaagttatatacactgacagtataaaaataccgagacgtcaacaaactgatgataagacggatcggagcctctgtgtcctcatggaatgaatgatataacatcacaaagcagtcattctcagtatggaagtcatcagagctgactgtttgtgatgctattttgcatttgaaatcgggtcaaagataaagtggtattgtccaatgtacaatatggtcctaatttcttgaatttcatgaataatcatactaccttactaggtagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="23939" stop="27629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24239" g_stop="24294" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24295" i_stop="24663" i_length="369">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24664" g_stop="24729" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="122" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24730" i_stop="25302" i_length="573">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25303" g_stop="25368" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="188" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25369" i_stop="25862" i_length="494">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25863" g_stop="25931" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="257" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25932" i_stop="26653" i_length="722">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26654" g_stop="26698" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="302" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26699" i_stop="26918" i_length="220">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26919" g_stop="27329" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="723" r_length="421" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E614003" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24239" e_stop="24294"/>
          <exon e_start="24664" e_stop="24729"/>
          <exon e_start="25303" e_stop="25368"/>
          <exon e_start="25863" e_stop="25931"/>
          <exon e_start="26654" e_stop="26698"/>
          <exon e_start="26919" e_stop="27329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGATTAGCAAGAAGGCTAGGGTTCAACAATCTTCAGCTCAACCATCTCTAAAGGTAATTGTTATTACTATATCTCTCTTCCTTTCCTATCTAATTTTTGTAAACCCTTGCGCTTGACCATATTTTTTCACTTTTTCCTAGAGTTCAACTCTGAAAAACATGTTTAGTCATAAAATTTTAAAACTTCAACTCGAATTCAAATTTTTCAAAAGTTCAACAAAAAAAAGTGTCTTCACTTTTTTCGTAATTAATTTGTGTTCATAGCCAAACACAATTTCACTTTGAAAAACAAAAAACTTTTTTTATTTTCAAATTTTACAATAAAACATGATCAAACGCCCATAATATCACCGAAAACTATGGTCTACCTAGCAAACTAAAGTCCTTAATTAACTTTTTTTTTTTTTTGCAATTTCTGTGCAGGTAAGAAAGGAGAAGCTAGGAGATAGAGTAACATCACTCCACCAACTTGTTTCTCCATTTGGAAAGGTAAAGTTACTAGCTAGGTTGTAACTTTTTACACTTAGAATGAGTAAATTTTTTTTTTTCACATCATTAGTTTAAGTTGACTTCTATAGATTAATCTATAAGTAATGTATACAATCAACTCAATAATTTTCTATAATAAGTTAAAATTCATCCATATATTAGTCACACTGAAATTAAAACACTAACCAAACAAGGTCCGAAACGAATTCACACTAATCACTTGATAATTACTAGTGTGATATGTTAAACTTATTTACAATGGTGTAATTGCATAAGATCACATAACTTGTACTGCGTATTAATTAGTCTATTTCCCATGCTGATGGCAGTACTGGATCACTGAAAAGAATAACGTTGAAATAGTAGTACTATATAAATAGACTAATTAATTTTTTTTGGTAGATAACACATTTTTTTATTTTTTTATTTTTTGCTTTAGTGATCTTACCCATGAAGTTGTGTCTAAATTAAATAAAGTTTTTCAACACAAAAAGGAAAAGAGAAAAAGAAGAATATATGGCTTTAAATTTGTGTTGGTGTATGAGACAGACATGTCATGTTTCTCTTTTGCAGACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAGGTCTTCCTTTTTTTTTTTTTCATTCATAAGCATGCTGCAAATATATTCATTGATTTTGACATGTTGCATTATACGTATATTCTCCGTTTCAAATAGAATGATTCACGGTGTCTTTTAGTCTGTCTAAAAATGGTATGATATGATCATTTGCACTTGACTGTTTAAACTCATAAGATTAAGCGATATTTTGTTACATTTAACATAACATTAATTTAACATCATAATTAAGAGTAAAAAAATCCTTATTTTCTTAACCTATATGTCAAGTCAAAATAGATTATTCTATTCGAAATGAAGAAATATTATTATTCACCTTATTATCTTTTAGATTATTTTATCTTACTTATTACGAATCGATCGTCCTATATATATATGTTACTAACTAATTATAAATATGTGAAAAATGTTATATATTACTATGAACATATATATATCCATTGATATTATACATGAATTTTTATCAAATTTTTTTTTTGGTGCACGTATATATGCAGGCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAATGTAAGAAATTTATTCTTTACACATTTTCCAATGCACGACCAAGATTCCTCATCAGTTTCTCATATTTATACACGTGCGACTGACTAATCATATCTGATTAATTCGTTAATTATCAAGATTAATCTTTTAACTTTTCTTGAATTCAAGAAAATTAAGTATTATTATTATTATTATTTACTTGATATACAAATGCCTACTTTATTGGATCCCTCACTAGTACACCAAAAGCTAGTTATGTGAGGCTTTACATTTGTAAAGCAACAGTCATATATATCAAAGTGTTCTGTTCATAAAAAGTGACCGCCCTAAAGGTGAAATGATCTTCTCAACAATAATTGCACTTCTTCAACTGAGTTTGGTAAAAACAAACTCTAATGATCTATTTTACATTGCGTAGTTTGACTGAGCATAAAATTTAAGAATATAAAAAATACGTCTAATTTATGTGTTCTTTAATTAATTAAAGTGTAGTAACATACAAAATGTAGCCTTTTAAGTAGTGGTTTAAATATGATTTCATGCCTATAAGGGAGTGTTAATGGAAATTTTATCACCAAAAGTTTACATAATATAGAAATATGACGTTCTTTTTTAAAACATACTAGAAGAGAGAAACGGATGGAGTAGCTTAGTCAAGAAAGGGGCTAAAATTTTGAATTTGGATCCATTATAACTTTCTTGTCCTTAGATACTAATTTGAATTCTAATTCCTTTTCATCTAGTTTTTGGATGGTAATTTTCTGAAAAGGAGACCAGCAAATAAGCAGGTACGGTATAATTCTATTCAATACATGTACATGCATGCCCCATTACTAGTGTGGCAATTAACAAATATGTTAAGTTTTACATTATCGTCAAATAATTTAACATGTTATAGCAGGTTACTTATTATTTGTTGTATGATGTTACTAATCAATGCTACATACTAAATTGAGTTGCCTCTAATTATCTTTTAATCGAGCTGATTTTAGTTTTCATTCTCTTTAGGATTCTCAGCACAAACCGATGGATTTAAGGAGTAGAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGATACCGGCGCCGATTATTGGGCTCCAGCTCTCGGAGGAGGATTTTGATGTTAC--GAGCTGATT-GGA-T---TTTAAGTTATATACACTGACAGTGTAAAAATACTGAGACGACAACAAACTGATGATAAGACGTATCGGAGCCTCTGTGTCCTCATGGAATGAATGATATAACATCACAAAGCAGTCATTCTCAGTATGAAAG---TCAGAGCTGACTGTTTGTGATGCTATTTTGCATTTGAAATCGGGTCAATGATAAAGTGGTATTTTCCAATGTACAATATGGTCCTATTTTCTTGAATTTCATGAATAATCTTACTACCTTACAAGGTAGTT</genome_strand>
        <mrna_strand>GTGGGATTAGTAAGAAGGCTAGGGTTCAACAATCTTCAGCTCAACCATCTCTAAAG.................................................................................................................................................................................................................................................................................................................................................................................GTAAGAAAGGAGAAGCTAGGAGATAGAGTAACATCACTCCACCAACTTGTTTCTCCATTTGGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGGATGGTAATTTTCTGAAAAGGAGGCCAGCAAGTAAGCAG............................................................................................................................................................................................................................GATTCTCAGCACAAAGCGATGGATTTAAGGAGTAGAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGACACCGGCGCCGATTACTGGGCTCCAGCTCTCGGAGGAGGATTTTGATGTTACAAGTGTTTATTCTGATTGGATTTAAGTTATATACACTGACAGTATAAAAATACCGAGACGTCAACAAACTGATGATAAGACGGATCGGAGCCTCTGTGTCCTCATGGAATGAATGATATAACATCACAAAGCAGTCATTCTCAGTATGGAAGTCATCAGAGCTGACTGTTTGTGATGCTATTTTGCATTTGAAATCGGGTCAAAGATAAAGTGGTATTGTCCAATGTACAATATGGTCCTAATTTCTTGAATTTCATGAATAATCATACTACCTTACTAGGTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E432014" ref_strand="-" ref_description="SGN-E432014 [STM-56-I18]">
      <seq>attagtaagaaggctagggttcaacaatcttcagctcaaccatctctaaaggtaagaaaggagaagctaggagatagagtaacatcactccaccaacttgtttctccatttggaaagactgatacagcctccgtcctatcagaagctattggctacatcagattccttcaggctcaaattcaggcattaagctcaccatacttgggcaatgcatcaggaagcatgggtcacattccccaacaatcactgaattttttggatggtaattttctgaaaaggaggccagcaagtaagcaggattctcagcacaaagcgatggatttaaggagtagagggttgtgcttggttcctatttcttgcatggcaaatataggaagtgacaccggcgccgattactgggctccagctctcggaggaggattttgatgttacaagtgtttattctgattggatttaagttatatacactgacagtcagtataaaaataccgagacgtcaacaaactgatgataagacggatcggagcctctgtgtcctcatggaatgaatgatataacatcacaaagcagtcattctcagtatggaagtcatcagagctgactgtttgtgatgctattttgcatttgaaatcggatcaaagataaagtggtattgtccaatgtacaatatggtcatattttcttgaatttcatgaataatcatactaccttactaggtagttcataagtgttgtatatgtaacttggaaatccataggtaaaatcaacatatcgttcagaaaaaaaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="23944" stop="27690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24244" g_stop="24294" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24295" i_stop="24663" i_length="369">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24664" g_stop="24729" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="117" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24730" i_stop="25302" i_length="573">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25303" g_stop="25368" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="183" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25369" i_stop="25862" i_length="494">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25863" g_stop="25931" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="252" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25932" i_stop="26653" i_length="722">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26654" g_stop="26698" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="297" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26699" i_stop="26918" i_length="220">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26919" g_stop="27375" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="768" r_length="471" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E432014" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432014" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24244" e_stop="24294"/>
          <exon e_start="24664" e_stop="24729"/>
          <exon e_start="25303" e_stop="25368"/>
          <exon e_start="25863" e_stop="25931"/>
          <exon e_start="26654" e_stop="26698"/>
          <exon e_start="26919" e_stop="27375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCAAGAAGGCTAGGGTTCAACAATCTTCAGCTCAACCATCTCTAAAGGTAATTGTTATTACTATATCTCTCTTCCTTTCCTATCTAATTTTTGTAAACCCTTGCGCTTGACCATATTTTTTCACTTTTTCCTAGAGTTCAACTCTGAAAAACATGTTTAGTCATAAAATTTTAAAACTTCAACTCGAATTCAAATTTTTCAAAAGTTCAACAAAAAAAAGTGTCTTCACTTTTTTCGTAATTAATTTGTGTTCATAGCCAAACACAATTTCACTTTGAAAAACAAAAAACTTTTTTTATTTTCAAATTTTACAATAAAACATGATCAAACGCCCATAATATCACCGAAAACTATGGTCTACCTAGCAAACTAAAGTCCTTAATTAACTTTTTTTTTTTTTTGCAATTTCTGTGCAGGTAAGAAAGGAGAAGCTAGGAGATAGAGTAACATCACTCCACCAACTTGTTTCTCCATTTGGAAAGGTAAAGTTACTAGCTAGGTTGTAACTTTTTACACTTAGAATGAGTAAATTTTTTTTTTTCACATCATTAGTTTAAGTTGACTTCTATAGATTAATCTATAAGTAATGTATACAATCAACTCAATAATTTTCTATAATAAGTTAAAATTCATCCATATATTAGTCACACTGAAATTAAAACACTAACCAAACAAGGTCCGAAACGAATTCACACTAATCACTTGATAATTACTAGTGTGATATGTTAAACTTATTTACAATGGTGTAATTGCATAAGATCACATAACTTGTACTGCGTATTAATTAGTCTATTTCCCATGCTGATGGCAGTACTGGATCACTGAAAAGAATAACGTTGAAATAGTAGTACTATATAAATAGACTAATTAATTTTTTTTGGTAGATAACACATTTTTTTATTTTTTTATTTTTTGCTTTAGTGATCTTACCCATGAAGTTGTGTCTAAATTAAATAAAGTTTTTCAACACAAAAAGGAAAAGAGAAAAAGAAGAATATATGGCTTTAAATTTGTGTTGGTGTATGAGACAGACATGTCATGTTTCTCTTTTGCAGACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAGGTCTTCCTTTTTTTTTTTTTCATTCATAAGCATGCTGCAAATATATTCATTGATTTTGACATGTTGCATTATACGTATATTCTCCGTTTCAAATAGAATGATTCACGGTGTCTTTTAGTCTGTCTAAAAATGGTATGATATGATCATTTGCACTTGACTGTTTAAACTCATAAGATTAAGCGATATTTTGTTACATTTAACATAACATTAATTTAACATCATAATTAAGAGTAAAAAAATCCTTATTTTCTTAACCTATATGTCAAGTCAAAATAGATTATTCTATTCGAAATGAAGAAATATTATTATTCACCTTATTATCTTTTAGATTATTTTATCTTACTTATTACGAATCGATCGTCCTATATATATATGTTACTAACTAATTATAAATATGTGAAAAATGTTATATATTACTATGAACATATATATATCCATTGATATTATACATGAATTTTTATCAAATTTTTTTTTTGGTGCACGTATATATGCAGGCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAATGTAAGAAATTTATTCTTTACACATTTTCCAATGCACGACCAAGATTCCTCATCAGTTTCTCATATTTATACACGTGCGACTGACTAATCATATCTGATTAATTCGTTAATTATCAAGATTAATCTTTTAACTTTTCTTGAATTCAAGAAAATTAAGTATTATTATTATTATTATTTACTTGATATACAAATGCCTACTTTATTGGATCCCTCACTAGTACACCAAAAGCTAGTTATGTGAGGCTTTACATTTGTAAAGCAACAGTCATATATATCAAAGTGTTCTGTTCATAAAAAGTGACCGCCCTAAAGGTGAAATGATCTTCTCAACAATAATTGCACTTCTTCAACTGAGTTTGGTAAAAACAAACTCTAATGATCTATTTTACATTGCGTAGTTTGACTGAGCATAAAATTTAAGAATATAAAAAATACGTCTAATTTATGTGTTCTTTAATTAATTAAAGTGTAGTAACATACAAAATGTAGCCTTTTAAGTAGTGGTTTAAATATGATTTCATGCCTATAAGGGAGTGTTAATGGAAATTTTATCACCAAAAGTTTACATAATATAGAAATATGACGTTCTTTTTTAAAACATACTAGAAGAGAGAAACGGATGGAGTAGCTTAGTCAAGAAAGGGGCTAAAATTTTGAATTTGGATCCATTATAACTTTCTTGTCCTTAGATACTAATTTGAATTCTAATTCCTTTTCATCTAGTTTTTGGATGGTAATTTTCTGAAAAGGAGACCAGCAAATAAGCAGGTACGGTATAATTCTATTCAATACATGTACATGCATGCCCCATTACTAGTGTGGCAATTAACAAATATGTTAAGTTTTACATTATCGTCAAATAATTTAACATGTTATAGCAGGTTACTTATTATTTGTTGTATGATGTTACTAATCAATGCTACATACTAAATTGAGTTGCCTCTAATTATCTTTTAATCGAGCTGATTTTAGTTTTCATTCTCTTTAGGATTCTCAGCACAAACCGATGGATTTAAGGAGTAGAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGATACCGGCGCCGATTATTGGGCTCCAGCTCTCGGAGGAGGATTTTGATGTTAC--GAGCTGATT-GGA-T---TTTAAGTTATATACACTGACAGT--G--TAAAAATACTGAGACGACAACAAACTGATGATAAGACGTATCGGAGCCTCTGTGTCCTCATGGAATGAATGATATAACATCACAAAGCAGTCATTCTCAGTATGAAAG---TCAGAGCTGACTGTTTGTGATGCTATTTTGCATTTGAAATCGGGTCAATGATAAAGTGGTATTTTCCAATGTACAATATGGTCCTATTTTCTTGAATTTCATGAATAATCTTACTACCTTACAAGGTAGTTCATAACTGTTGTATATGTAACTTGGAAATCCATAGGTACAATCAAC</genome_strand>
        <mrna_strand>ATTAGTAAGAAGGCTAGGGTTCAACAATCTTCAGCTCAACCATCTCTAAAG.................................................................................................................................................................................................................................................................................................................................................................................GTAAGAAAGGAGAAGCTAGGAGATAGAGTAACATCACTCCACCAACTTGTTTCTCCATTTGGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGGATGGTAATTTTCTGAAAAGGAGGCCAGCAAGTAAGCAG............................................................................................................................................................................................................................GATTCTCAGCACAAAGCGATGGATTTAAGGAGTAGAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGACACCGGCGCCGATTACTGGGCTCCAGCTCTCGGAGGAGGATTTTGATGTTACAAGTGTTTATTCTGATTGGATTTAAGTTATATACACTGACAGTCAGTATAAAAATACCGAGACGTCAACAAACTGATGATAAGACGGATCGGAGCCTCTGTGTCCTCATGGAATGAATGATATAACATCACAAAGCAGTCATTCTCAGTATGGAAGTCATCAGAGCTGACTGTTTGTGATGCTATTTTGCATTTGAAATCGGATCAAAGATAAAGTGGTATTGTCCAATGTACAATATGGTCATATTTTCTTGAATTTCATGAATAATCATACTACCTTACTAGGTAGTTCATAAGTGTTGTATATGTAACTTGGAAATCCATAGGTAAAATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E398712" ref_strand="-" ref_description="SGN-E398712 [TUS-45-D13]">
      <seq>tggaaagactgatacagcctccgtcctatcagaagctattggctacatcagattccttcaggctcaaattcaggcattaagctcaccatacttgggcaatgcatcaggaagcatgggtcacattccccaacaatcactgaatgattctcagcacaaaccgatggatttaaggagtagagggttgtgcttggttcctatttcttgcatggcaaatataggaagtgataccggcgccgattattgggctccagctctcggaggaggattttgatgttacgagctgattggattttaagttatatacactgacagtgtaaaaatactgagacgacaacaaactgatgataagacgtatcggagcctctgtgtcctcatggaatgaatgatataacatcacaaagcagtcattctcagtatgaaagtcagagctgactgtttgtgatgctattttgcatttgaaatcgggtcaatgataaagtggtattttccaatgtacaatatggtcctattttcttgaatttcatgaataatcttactaccttacaaggtagttcataactgttgtatatgtaacttggaaatccataggtacaatcaacatatcgtttcgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="25001" stop="27690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25303" g_stop="25368" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="73" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25369" i_stop="25862" i_length="494">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25863" g_stop="25931" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="142" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25932" i_stop="26918" i_length="987">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26919" g_stop="27396" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="620" r_length="478" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E398712" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398712" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25303" e_stop="25368"/>
          <exon e_start="25863" e_stop="25931"/>
          <exon e_start="26919" e_stop="27396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAGGTCTTCCTTTTTTTTTTTTTCATTCATAAGCATGCTGCAAATATATTCATTGATTTTGACATGTTGCATTATACGTATATTCTCCGTTTCAAATAGAATGATTCACGGTGTCTTTTAGTCTGTCTAAAAATGGTATGATATGATCATTTGCACTTGACTGTTTAAACTCATAAGATTAAGCGATATTTTGTTACATTTAACATAACATTAATTTAACATCATAATTAAGAGTAAAAAAATCCTTATTTTCTTAACCTATATGTCAAGTCAAAATAGATTATTCTATTCGAAATGAAGAAATATTATTATTCACCTTATTATCTTTTAGATTATTTTATCTTACTTATTACGAATCGATCGTCCTATATATATATGTTACTAACTAATTATAAATATGTGAAAAATGTTATATATTACTATGAACATATATATATCCATTGATATTATACATGAATTTTTATCAAATTTTTTTTTTGGTGCACGTATATATGCAGGCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAATGTAAGAAATTTATTCTTTACACATTTTCCAATGCACGACCAAGATTCCTCATCAGTTTCTCATATTTATACACGTGCGACTGACTAATCATATCTGATTAATTCGTTAATTATCAAGATTAATCTTTTAACTTTTCTTGAATTCAAGAAAATTAAGTATTATTATTATTATTATTTACTTGATATACAAATGCCTACTTTATTGGATCCCTCACTAGTACACCAAAAGCTAGTTATGTGAGGCTTTACATTTGTAAAGCAACAGTCATATATATCAAAGTGTTCTGTTCATAAAAAGTGACCGCCCTAAAGGTGAAATGATCTTCTCAACAATAATTGCACTTCTTCAACTGAGTTTGGTAAAAACAAACTCTAATGATCTATTTTACATTGCGTAGTTTGACTGAGCATAAAATTTAAGAATATAAAAAATACGTCTAATTTATGTGTTCTTTAATTAATTAAAGTGTAGTAACATACAAAATGTAGCCTTTTAAGTAGTGGTTTAAATATGATTTCATGCCTATAAGGGAGTGTTAATGGAAATTTTATCACCAAAAGTTTACATAATATAGAAATATGACGTTCTTTTTTAAAACATACTAGAAGAGAGAAACGGATGGAGTAGCTTAGTCAAGAAAGGGGCTAAAATTTTGAATTTGGATCCATTATAACTTTCTTGTCCTTAGATACTAATTTGAATTCTAATTCCTTTTCATCTAGTTTTTGGATGGTAATTTTCTGAAAAGGAGACCAGCAAATAAGCAGGTACGGTATAATTCTATTCAATACATGTACATGCATGCCCCATTACTAGTGTGGCAATTAACAAATATGTTAAGTTTTACATTATCGTCAAATAATTTAACATGTTATAGCAGGTTACTTATTATTTGTTGTATGATGTTACTAATCAATGCTACATACTAAATTGAGTTGCCTCTAATTATCTTTTAATCGAGCTGATTTTAGTTTTCATTCTCTTTAGGATTCTCAGCACAAACCGATGGATTTAAGGAGTAGAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGATACCGGCGCCGATTATTGGGCTCCAGCTCTCGGAGGAGGATTTTGATGTTACGAGCTGATTGGATTTTAAGTTATATACACTGACAGTGTAAAAATACTGAGACGACAACAAACTGATGATAAGACGTATCGGAGCCTCTGTGTCCTCATGGAATGAATGATATAACATCACAAAGCAGTCATTCTCAGTATGAAAGTCAGAGCTGACTGTTTGTGATGCTATTTTGCATTTGAAATCGGGTCAATGATAAAGTGGTATTTTCCAATGTACAATATGGTCCTATTTTCTTGAATTTCATGAATAATCTTACTACCTTACAAGGTAGTTCATAACTGTTGTATATGTAACTTGGAAATCCATAGGTACAATCAACATATCGTTTCGAAAATTTTAT</genome_strand>
        <mrna_strand>ACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCAGCACAAACCGATGGATTTAAGGAGTAGAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGATACCGGCGCCGATTATTGGGCTCCAGCTCTCGGAGGAGGATTTTGATGTTACGAGCTGATTGGATTTTAAGTTATATACACTGACAGTGTAAAAATACTGAGACGACAACAAACTGATGATAAGACGTATCGGAGCCTCTGTGTCCTCATGGAATGAATGATATAACATCACAAAGCAGTCATTCTCAGTATGAAAGTCAGAGCTGACTGTTTGTGATGCTATTTTGCATTTGAAATCGGGTCAATGATAAAGTGGTATTTTCCAATGTACAATATGGTCCTATTTTCTTGAATTTCATGAATAATCTTACTACCTTACAAGGTAGTTCATAACTGTTGTATATGTAACTTGGAAATCCATAGGTACAATCAACATATCGTTTCGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E372470" ref_strand="-" ref_description="SGN-E372470 [TUS-32-C4]">
      <seq>acccaattgagacaaaaatataatctagtggaagctcattagtcagacatgatttcccatatgttctgtccatgttgctgtttttgtcaagaattcagagagcttggaaacaggggacttgatcccgctctagggtggaatggtatagttggtcagcgacactatgggaaccgacaagtgaatcaagctcctcaagtacaatccatgtcaatgtaaaaattcaagattgtgattctttatttgtttgatttgaggttgtggtgtgttagtaaaaaccagattctgttcatgttggaagttgtatccttaaaactcagccatattgttggttgtgttatttgtttgaactatgtttttacaacccctattcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="37485" stop="11136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37185" g_stop="37053" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37052" i_stop="31458" i_length="5595">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31457" g_stop="31219" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="372" r_length="239" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31218" i_stop="31046" i_length="173">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.874" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31045" g_stop="31018" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="400" r_length="28" r_score="0.536"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E372470" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372470" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37185" e_stop="37053"/>
          <exon e_start="31457" e_stop="31219"/>
          <exon e_start="31045" e_stop="31018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAGGTATGTCATGTCACGCTTGGTTACAATTAATATTCTACTACCTGTCTCGTTCATCTAAAAACTTAAACTAATAGAATGACGATGAGACTCTTTAAGCCACGAATATCTTAACATTGTTACTGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGATGGAGATTAAGGAAGAAGAGAAGAAGAAGTGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTATAATGAATCTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTAACTAACTAATGGAAATATAACTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACACCCCCCCTCAAGTTGGAGGTGTAGCAAGCAGATCCAACTTGCTTAAGATTGCTGAATGCTTCACTCCAGTGAGTGCTTTGGTTAGAATGTCAGCAAATTGTTCACCAGTTCCAATATGATGCAATGAGATTAGTCCTTCTTGAAGCTTAGCTCTCACAAAATGGCAATCGACTTCAATATGCTTAGTTCTTTCATGGAATACAGGATTCTTGGCAATTTGTAATGCTGATTGGCTATCACAGAAAACAGGAAAAGGACTAGCACATGGCACAGTTAGCTCTTCAAACAATCTGCTTAACCATAGCAATTCCCCTACTACTTTCCTAATAGACCTATATTCAGCTTCAGCTGAAGATAGAGATATAGTTTCTTGTTTCTTCGATTTCTAGCTGACAGGACTTGATCCCAACAACACAATATAACCAGTAACAGACTTCCTTGAGTCAGGACAGGATGCCCAGTCTGAGTCACAAAAGGCTTGGACCTGGTAATCATTAGTAGAAGACATGAGTAAACCCAAGGTTGGATCCTTTTTAAGGTACCTAAGTAGATGATATGCAGCCTGCAAAAGAGGTTCTCTAGGCTCTTGCATAAACTGACTCAGATGTTGTACTCCATATGCAATATCTAATCTTGTATTGGTGAGAAAATTTAACTTTCCAATCAACTTTCTATATGACTTAGGATTCTCCAAAAGTTTCCCTTCATTGGCTTTGAGCTTGATGGTAGAATCAAGAGGAGAAGCAAGACTAGAGTATGTAGTGCAGTTATACTCTTTGAGAAGATCAAGCACAAATTTTCTCTGGGAGATAAGCATTCCAGCTTCTGTATATAGTATTTCCAGGCCCAAAAAATAGTGCAGCTTTCCCAAATCCTTGATTTTGAATTGGTTATGAAGATAGTTCTTTAACTGATCAATTTCTTCAGCATCATTTGCAGTAAGTAGAATATCATCTACATATACAGCTATAAACACAGTAGAAGAACCTTGTTTTCTATAGAACAAAAAGTAGTCATTCAAGGAGTTGTTGTATCCCCTAGACTTTAAGGCATCAGACAACTTAGCACACCATTGTCTGCTGGCCTGTTTTAATCCATATAGGGACTTGTTAAGCTTACAAACCATGCCTTTAGTTGTAACATCCAATCCCTGTGGAATATCCATATATACTTCTTCATGCAGCTCTCCATGAAGAAAAGCATTATTAACATCTAACTGGTATATATTCCAGTGCTTCTTTACTGCAGTGGCTATCAAAACTCTCACAGTTGTCATTTTGATGACTGGAGAGAAAGTTTCTATATAATCTACTCCATAATGCTGAGTGTAACCCTTTACAACTAGCCTTGCTTTGTACCTTTCTATACTCCCATCAGCCTTATGTTTTACCTTGTAAACTCATCTACATCCAATAGCCTTTTTACCAGTAGGAAGTGGCATAAGTTCCCAAGTATCATTGTCATGTAATGCAGTCAATTCTTGTGTCATTGCATCTTGCCAGGCAGGATTCATTGCAGCCTCATTAAATGATGATGGTTCACAATCATGTGACACACTCAATATAAGTGATTGATTGTCAGGATACAAGGATGTAGAAGCTATATGATGGTGATGTGAAAAAGAGGCATGTAAAGAGGTCATATAGTCTTTAAGGTAAACTGGAGGTTTATGAGTTCTAGTAGATTTTCTGATGGGAGGATCATATTCTGAGGATGTGAGGTTTGGTGAAGGAGAAGTAGTTAAAATGGGATCACATTGTTCAGGTTCTGGAGAGGTGATACCAATATTATCATTGTCAAAAAAACGTTATCAAATGTAGAACTTGAAGAAGAATTGTTGATAGGAGAATTGATCATACTAGAAAAAGGAAAAACTGTTTCATGGAACACAACATCTCTAGAAATATGTATCTTCTTACTGCTCAAACTTAACACCTTATAACCTTTAACTCCAAAAGGATATCCTAGGAATACATGAGGTGTAGCTCTAGGTTCAAATTTAGTTCTTTGATGTTTAGGTGTAGTAGGAAAACAAAGACAGCCAAAACTTTTCATGTGAGAGTATTGAGGTTCTTGATTATACATTATGGAATAAGGACACTTATTGTGAAGATATGCAGAAGGGAGTCTATTAATTATATATGTGGCTGTAAGTATGCATTCTCCCCAATACTTAGTAGGTAACTTGGAATGGAAAAGAAGAGCTCTAGCTGTTTCTAGTAGATATTTATGCTTTCTCTCTACCACACCATTTTGTTGTGGTGTATAAGGACAAGATTTCTGATGTAATATTCCTTTGGATTGAAAATAAAGGATAGATTCTTGATTCACAAACTCAAGACCATTATCTGATCTTATTTTTTGAATATTTGTCTTAAACTGATTTTCTACCATATTAACAAAGGATTTCACAATGTGTAAAGCATTGCTTTTACAACTCAACAAGTGTGTCCAAGTAGTTCTACTAAAGTCATCAACTAAGGTAATGAAGTATTTAAAATTGTCATGAGTGGGTAAATGATAAGGACCCCATAGGTCTATATGCAGAAGTTCAAAAATTCTTGATGTATTATGAGTCTTAGGTGGAAAAGAAAGCCTAGTTTGTCTGGCCATAGGGCAAATATTGCATGTAAAAGGTTGTTTAGATGAAAAAATCACAGGAATGGATGTAATCCCTTTCATCTTTATAAAAGGCACATGCCTAAGTCTGTAATGCCATAACAAATCATTACAAGAATCATGAGATAAAAGAGGTACAGAATCAGAAAGTACATTATTAGTGTCACTAGGAATTGTGTTCATTACAGTTGATCTAACATTCTGAAAATTGAACAAAGGATTGCAAGAATGATTGATGGTACTACAAGAATGAGAGAAGCATTGACATTGAGAGCCTATCTTATTGTTGTGAGAAGAACAAGACATTGAAGATGAGACTTGTGAAATGAATGGACTGTCTTTTTTCTTTTTTAAACAATCTGAGCAAAGAAAGTATAATCCATCTTGTTCTCTACCAATCTCCAGAGGCCTCTTCATTGAAGGGCCCTGCAAGGTACAAGATGAGTTAGAGAATGATGTAGTACAATTGAGATGTAGAGACAAGGAACTAATAGAAATCAAATTGTATTTAAAAGAAGGGATAAAAAGAACTCTGAACGGTGTGATCATGTCATTTATTCTAACATCTCCAACTTTAGTCACCTTAACTTTGTATCCATTTGGCAATTTAACTAACATAGGATATGGTAAGTTAGTGACATGTGAAAGATGGTTGATATTAAAGGTCATATGATGTGTAGCTCCTGAATCCAGTATCCATAAATCAGTCCTTGATTTGAGACAACCACACGACAGCTTATCAAAATCAATAGATGAGTTGCAAGCTATCATACCTGCAAAGTTTGCAGCTCCACAAGTTACTTGTTCCTCAGAATCAACATCTTCAGGTTGTCCTAATTGAATGTGTTGCAACAGATTAATAAGTTGATCATATTGTTCATTGGTGAGATTAGCACTACAGGCTGTATGAGCATCAACTTTTCCATTTGGTGATTCTGCAAAAACATTAGCTACCACCATTCTTTTACCTCTAGCATACCTACTGCTTGTATTGTAATTGGTTTGTACCCTTTGATTTTGATTAACACCTTGACCATTAGATGAGTTATTTTGATTGGGATAGCCATGTAACTTGTAACATTTATCAATAATATGCCCTGATCTCTTGCAATGCTCACAAAAAGGTCTAGGCTTATTGTTTGCAGGATAATTGCTTGGTGCATAATTTGTTCTAAATCTTCCTCCTGTCGAGTTTGATGAACTAGCATTGGCAGAACTTGATGGATTAGATGAACCACCACGTATGGATGAATTCATTGAACTTCCTTCAGCAAACATTTGACTATGTGGCTTAAATTCCCTTTGTTTCTCTTCTTGTACAAGTAATGCAAAGGCTTGAGCCATAGATGGTAGTGGATTCATCATCAGAATATTACCTCTAATAACAGTATAGACTTCATTAAGCCCCATTAAAAATTGAATCAATCTTCGATCTTGTTCAGCCTTGTGCATAATTTCTTTACCTCCACAGCTACAGGCACAACTACACTGGTTTTTGATACTCAGATTACTCAACTCCTCCCAGAGCTTCTTCATCCTAGTGTAGTATACAGTAACATCAAGAACTCCCTGACTCAGATCATTGATATCCCTTTGAATTTGAAACAATTTGGCACCATTCGTTTGATCATATCGATCTTCTAACTCTTTCCATAGTTCTACTGCATCAGACACATACTCTACACTGTCTGCAATGTCTTTGCTAAGAGAGTTTAGGATCCAAGATATTACCATGTTATCACATCTCTCCCACTGACAATATTGTGGAGATGTTGAAGAAGGGCGTTTGAACTCTCCAGTAATGAATCCTAACTTGTTTTTCACAGATAAAGATCTCATTACGCCTCGTCGCCATGATCGATAACCAATTCCTTCAAAAGCTACTGGAACTAGGGTCAAACTTGGATTATCAGATGTATGTATGTAGAGAGGGTTACTAATATCGATTGTGTTCCCTCCTGTTCCTCCTGTTCCTGATATGGAAGCTTGGCCAGAAACTTCAACCATAATGAATTCAATTCACAGGAACCAAATAATAGAATGCTGAAGAAAATCAACAAGAAGAAGGATTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTCGATTTCTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTTCGATTTTTCAGAGATGATAAGAACAGTGATCTACACCTGCTTTGATACCATGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGAAGGAGATTAAGGAAGAAGAGAAGAAGAAGCGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTACAATGAATTTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTGACTAACTAATGGAAGCTAATAACTAACTAATGGAAATATAACTAACTAATTGAAAAGCTGTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACAGTTACAATAAATGTTGTGCAGGGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATAAACAATGCCTCTTGTCTATGTGCTTGCTACAAATAACACCATCAATCAACTATTTATCAATAAATTCGATAATAAGAATCCTCTATGATCATTATGCTCGATGTGAACACATTTTATTCCAAATAATATGTATGATTTAACGAAACAAAAATTGTTCACTAGGAAGCATTAAAACCAAACCATCAAGAAC</genome_strand>
        <mrna_strand>ACCCAATTGAGACAAAAATATAATCTAGTGGAAGCTCATTAGTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTGTTTTTGTCAAGAATTCAGAGAGCTTGGAAACAGGGGACTTGATCCCGCTCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATGGTATAGTTGGTCAGCGACACTATGGGAACCGACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTGGAAGTTGTATCCTTAAAACTCAGCCATATTGTTGGTTGTGTTATTTGTTTGAACTATGTTTTTACAACCCCTATTCAA.............................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E373227" ref_strand="+" ref_description="SGN-E373227 [TUS-31-D3]">
      <seq>tactatttggataacaatgggaagagttgaagcaaacaatgaaggagaaacatctcaggcagagagtggtactgaaccagctgcctcacagcctcaacagttccaaggagtacaaagtgtgtatcagtcaccatcacacttaacaattggagctccttggagtactggcttatttgattgtcatctggaccaaactaatgctgtcatgacggcgttcttaccttgtgtaacatttggacaaatagcagaagtccttgatgcaggacaaatgacatgccctttggggactttcatatacatgctgatgatgcctgctgtctgctctcagtggatcatgggctcaaaatatagaacccaattgagacaaagatataatctagtggaagctccttattcagacatgatttcccatatgttctgtccatgttgctctctttgtcaagaattcagagagcttcgaaacaggggacttgatcccgctctagggtggaatggtatagttgctcagcgacactatgggaaccaacaagtgaatcaagctcctcaagtacaatccatgtcaatgtaaaaattcaagattgtgattctttatttgtttgatttgaggttgtggtgtgttagtaaaaaccagattctgttcatgtttgaagttgtatccttaaaactcaaccatattgttggctgtgttagttgtttgaactatgtttttacaaccccaattcgagttagattatataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38375" stop="30903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38075" g_stop="37876" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37875" i_stop="37448" i_length="428">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37447" g_stop="37376" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="272" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37375" i_stop="37266" i_length="110">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37265" g_stop="37053" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="485" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37052" i_stop="31458" i_length="5595">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31457" g_stop="31198" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="745" r_length="260" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E373227" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38075" e_stop="37876"/>
          <exon e_start="37447" e_stop="37376"/>
          <exon e_start="37265" e_stop="37053"/>
          <exon e_start="31457" e_stop="31198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATGGTAAATTAAGTTTATTACTGTCATTGTTAAGTGTCCTATTTGTGTGGGATGAGTTAGTTGGTCTCTTGTTAAATGTTTTAGGGGAATCTGAGTTAGCTTTTGAGGTTGAGTGAGACTGAATGTTCATTTATCTTTCATGGTATCAAAGATAGACTCAAATCAATTCTTGGTTTACTCGATGTTTGGCCTTTATGTTATGTTGTTCACACTTTAGATGTCCAGTCCTGGTGGCGTGGGGGAATATTGGTCAATCATCACCTCTTGAGCTAGTTTTTAAAATTGATTTAGGCCCAAAAATTCATTGTTTTATCATGGTACCAGAGTTAACTTTGTTGTGTGGGGATATTGGAATCCCAACATCTTCACATTTGTTTGACTTAAAATCCTTGATCCGCTTCTAAAAATTACATTCTTGTTTGTTTGTACAGCTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGAGTAAGTTTCCCAGTCGACCCATCTTACTTGTCGGTATACAGAAGTTAAAACTCTTTGAATAAACCAATACTAAAGTTTGATATTTTTTGTGTGTTTGGTGATTAATGCAGCATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAGGTATGTCATGTCACGCTTGGTTACAATTAATATTCTACTACCTGTCTCGTTCATCTAAAAACTTAAACTAATAGAATGACGATGAGACTCTTTAAGCCACGAATATCTTAACATTGTTACTGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGATGGAGATTAAGGAAGAAGAGAAGAAGAAGTGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTATAATGAATCTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTAACTAACTAATGGAAATATAACTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACACCCCCCCTCAAGTTGGAGGTGTAGCAAGCAGATCCAACTTGCTTAAGATTGCTGAATGCTTCACTCCAGTGAGTGCTTTGGTTAGAATGTCAGCAAATTGTTCACCAGTTCCAATATGATGCAATGAGATTAGTCCTTCTTGAAGCTTAGCTCTCACAAAATGGCAATCGACTTCAATATGCTTAGTTCTTTCATGGAATACAGGATTCTTGGCAATTTGTAATGCTGATTGGCTATCACAGAAAACAGGAAAAGGACTAGCACATGGCACAGTTAGCTCTTCAAACAATCTGCTTAACCATAGCAATTCCCCTACTACTTTCCTAATAGACCTATATTCAGCTTCAGCTGAAGATAGAGATATAGTTTCTTGTTTCTTCGATTTCTAGCTGACAGGACTTGATCCCAACAACACAATATAACCAGTAACAGACTTCCTTGAGTCAGGACAGGATGCCCAGTCTGAGTCACAAAAGGCTTGGACCTGGTAATCATTAGTAGAAGACATGAGTAAACCCAAGGTTGGATCCTTTTTAAGGTACCTAAGTAGATGATATGCAGCCTGCAAAAGAGGTTCTCTAGGCTCTTGCATAAACTGACTCAGATGTTGTACTCCATATGCAATATCTAATCTTGTATTGGTGAGAAAATTTAACTTTCCAATCAACTTTCTATATGACTTAGGATTCTCCAAAAGTTTCCCTTCATTGGCTTTGAGCTTGATGGTAGAATCAAGAGGAGAAGCAAGACTAGAGTATGTAGTGCAGTTATACTCTTTGAGAAGATCAAGCACAAATTTTCTCTGGGAGATAAGCATTCCAGCTTCTGTATATAGTATTTCCAGGCCCAAAAAATAGTGCAGCTTTCCCAAATCCTTGATTTTGAATTGGTTATGAAGATAGTTCTTTAACTGATCAATTTCTTCAGCATCATTTGCAGTAAGTAGAATATCATCTACATATACAGCTATAAACACAGTAGAAGAACCTTGTTTTCTATAGAACAAAAAGTAGTCATTCAAGGAGTTGTTGTATCCCCTAGACTTTAAGGCATCAGACAACTTAGCACACCATTGTCTGCTGGCCTGTTTTAATCCATATAGGGACTTGTTAAGCTTACAAACCATGCCTTTAGTTGTAACATCCAATCCCTGTGGAATATCCATATATACTTCTTCATGCAGCTCTCCATGAAGAAAAGCATTATTAACATCTAACTGGTATATATTCCAGTGCTTCTTTACTGCAGTGGCTATCAAAACTCTCACAGTTGTCATTTTGATGACTGGAGAGAAAGTTTCTATATAATCTACTCCATAATGCTGAGTGTAACCCTTTACAACTAGCCTTGCTTTGTACCTTTCTATACTCCCATCAGCCTTATGTTTTACCTTGTAAACTCATCTACATCCAATAGCCTTTTTACCAGTAGGAAGTGGCATAAGTTCCCAAGTATCATTGTCATGTAATGCAGTCAATTCTTGTGTCATTGCATCTTGCCAGGCAGGATTCATTGCAGCCTCATTAAATGATGATGGTTCACAATCATGTGACACACTCAATATAAGTGATTGATTGTCAGGATACAAGGATGTAGAAGCTATATGATGGTGATGTGAAAAAGAGGCATGTAAAGAGGTCATATAGTCTTTAAGGTAAACTGGAGGTTTATGAGTTCTAGTAGATTTTCTGATGGGAGGATCATATTCTGAGGATGTGAGGTTTGGTGAAGGAGAAGTAGTTAAAATGGGATCACATTGTTCAGGTTCTGGAGAGGTGATACCAATATTATCATTGTCAAAAAAACGTTATCAAATGTAGAACTTGAAGAAGAATTGTTGATAGGAGAATTGATCATACTAGAAAAAGGAAAAACTGTTTCATGGAACACAACATCTCTAGAAATATGTATCTTCTTACTGCTCAAACTTAACACCTTATAACCTTTAACTCCAAAAGGATATCCTAGGAATACATGAGGTGTAGCTCTAGGTTCAAATTTAGTTCTTTGATGTTTAGGTGTAGTAGGAAAACAAAGACAGCCAAAACTTTTCATGTGAGAGTATTGAGGTTCTTGATTATACATTATGGAATAAGGACACTTATTGTGAAGATATGCAGAAGGGAGTCTATTAATTATATATGTGGCTGTAAGTATGCATTCTCCCCAATACTTAGTAGGTAACTTGGAATGGAAAAGAAGAGCTCTAGCTGTTTCTAGTAGATATTTATGCTTTCTCTCTACCACACCATTTTGTTGTGGTGTATAAGGACAAGATTTCTGATGTAATATTCCTTTGGATTGAAAATAAAGGATAGATTCTTGATTCACAAACTCAAGACCATTATCTGATCTTATTTTTTGAATATTTGTCTTAAACTGATTTTCTACCATATTAACAAAGGATTTCACAATGTGTAAAGCATTGCTTTTACAACTCAACAAGTGTGTCCAAGTAGTTCTACTAAAGTCATCAACTAAGGTAATGAAGTATTTAAAATTGTCATGAGTGGGTAAATGATAAGGACCCCATAGGTCTATATGCAGAAGTTCAAAAATTCTTGATGTATTATGAGTCTTAGGTGGAAAAGAAAGCCTAGTTTGTCTGGCCATAGGGCAAATATTGCATGTAAAAGGTTGTTTAGATGAAAAAATCACAGGAATGGATGTAATCCCTTTCATCTTTATAAAAGGCACATGCCTAAGTCTGTAATGCCATAACAAATCATTACAAGAATCATGAGATAAAAGAGGTACAGAATCAGAAAGTACATTATTAGTGTCACTAGGAATTGTGTTCATTACAGTTGATCTAACATTCTGAAAATTGAACAAAGGATTGCAAGAATGATTGATGGTACTACAAGAATGAGAGAAGCATTGACATTGAGAGCCTATCTTATTGTTGTGAGAAGAACAAGACATTGAAGATGAGACTTGTGAAATGAATGGACTGTCTTTTTTCTTTTTTAAACAATCTGAGCAAAGAAAGTATAATCCATCTTGTTCTCTACCAATCTCCAGAGGCCTCTTCATTGAAGGGCCCTGCAAGGTACAAGATGAGTTAGAGAATGATGTAGTACAATTGAGATGTAGAGACAAGGAACTAATAGAAATCAAATTGTATTTAAAAGAAGGGATAAAAAGAACTCTGAACGGTGTGATCATGTCATTTATTCTAACATCTCCAACTTTAGTCACCTTAACTTTGTATCCATTTGGCAATTTAACTAACATAGGATATGGTAAGTTAGTGACATGTGAAAGATGGTTGATATTAAAGGTCATATGATGTGTAGCTCCTGAATCCAGTATCCATAAATCAGTCCTTGATTTGAGACAACCACACGACAGCTTATCAAAATCAATAGATGAGTTGCAAGCTATCATACCTGCAAAGTTTGCAGCTCCACAAGTTACTTGTTCCTCAGAATCAACATCTTCAGGTTGTCCTAATTGAATGTGTTGCAACAGATTAATAAGTTGATCATATTGTTCATTGGTGAGATTAGCACTACAGGCTGTATGAGCATCAACTTTTCCATTTGGTGATTCTGCAAAAACATTAGCTACCACCATTCTTTTACCTCTAGCATACCTACTGCTTGTATTGTAATTGGTTTGTACCCTTTGATTTTGATTAACACCTTGACCATTAGATGAGTTATTTTGATTGGGATAGCCATGTAACTTGTAACATTTATCAATAATATGCCCTGATCTCTTGCAATGCTCACAAAAAGGTCTAGGCTTATTGTTTGCAGGATAATTGCTTGGTGCATAATTTGTTCTAAATCTTCCTCCTGTCGAGTTTGATGAACTAGCATTGGCAGAACTTGATGGATTAGATGAACCACCACGTATGGATGAATTCATTGAACTTCCTTCAGCAAACATTTGACTATGTGGCTTAAATTCCCTTTGTTTCTCTTCTTGTACAAGTAATGCAAAGGCTTGAGCCATAGATGGTAGTGGATTCATCATCAGAATATTACCTCTAATAACAGTATAGACTTCATTAAGCCCCATTAAAAATTGAATCAATCTTCGATCTTGTTCAGCCTTGTGCATAATTTCTTTACCTCCACAGCTACAGGCACAACTACACTGGTTTTTGATACTCAGATTACTCAACTCCTCCCAGAGCTTCTTCATCCTAGTGTAGTATACAGTAACATCAAGAACTCCCTGACTCAGATCATTGATATCCCTTTGAATTTGAAACAATTTGGCACCATTCGTTTGATCATATCGATCTTCTAACTCTTTCCATAGTTCTACTGCATCAGACACATACTCTACACTGTCTGCAATGTCTTTGCTAAGAGAGTTTAGGATCCAAGATATTACCATGTTATCACATCTCTCCCACTGACAATATTGTGGAGATGTTGAAGAAGGGCGTTTGAACTCTCCAGTAATGAATCCTAACTTGTTTTTCACAGATAAAGATCTCATTACGCCTCGTCGCCATGATCGATAACCAATTCCTTCAAAAGCTACTGGAACTAGGGTCAAACTTGGATTATCAGATGTATGTATGTAGAGAGGGTTACTAATATCGATTGTGTTCCCTCCTGTTCCTCCTGTTCCTGATATGGAAGCTTGGCCAGAAACTTCAACCATAATGAATTCAATTCACAGGAACCAAATAATAGAATGCTGAAGAAAATCAACAAGAAGAAGGATTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTCGATTTCTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTTCGATTTTTCAGAGATGATAAGAACAGTGATCTACACCTGCTTTGATACCATGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGAAGGAGATTAAGGAAGAAGAGAAGAAGAAGCGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTACAATGAATTTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTGACTAACTAATGGAAGCTAATAACTAACTAATGGAAATATAACTAACTAATTGAAAAGCTGTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACAGTTACAATAAATGTTGTGCAGGGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATAAACAATGCCT</genome_strand>
        <mrna_strand>TACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA..............................................................................................................CATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E373226" ref_strand="-" ref_description="SGN-E373226 [TUS-31-D3]">
      <seq>atttggataacaatgggaagagttgaagcaaacaatgaaggagaaacatctcaggcagagagtggtactgaaccagctgcctcacagcctcaacagttccaaggagtacaaagtgtgtatcagtcaccatcacacttaacaattggagctccttggagtactggcttatttgattgtcatctggaccaaactaatgctgtcatgacggcgttcttaccttgtgtaacatttggacaaatagcagaagtccttgatgcaggacaaatgacatgccctttggggactttcatatacatgctgatgatgcctgctgtctgctctcagtggatcatgggctcaaaatatagaacccaattgagacaaagatataatctagtggaagctccttattcagacatgatttcccatatgttctgtccatgttgctctctttgtcaagaattcagagagcttcgaaacaggggacttgatcccgctctagggtggaatggtatagttgctcagcgacactatgggaaccaacaagtgaatcaagctcctcaagtacaatccatgtcaatgtaaaaattcaagattgtgattctttatttgtttgatttgaggttgtggtgtgttagtaaaaaccagattctgttcatgtttgaagttgtatccttaaaactcaaccatattgttggctgtgttagttgtttgaactatgtttttacaaccccaattcgagttagattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38371" stop="30903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38071" g_stop="37876" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37875" i_stop="37448" i_length="428">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37447" g_stop="37376" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="268" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37375" i_stop="37266" i_length="110">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37265" g_stop="37053" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="481" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37052" i_stop="31458" i_length="5595">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31457" g_stop="31199" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="740" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E373226" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373226" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38071" e_stop="37876"/>
          <exon e_start="37447" e_stop="37376"/>
          <exon e_start="37265" e_stop="37053"/>
          <exon e_start="31457" e_stop="31199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATGGTAAATTAAGTTTATTACTGTCATTGTTAAGTGTCCTATTTGTGTGGGATGAGTTAGTTGGTCTCTTGTTAAATGTTTTAGGGGAATCTGAGTTAGCTTTTGAGGTTGAGTGAGACTGAATGTTCATTTATCTTTCATGGTATCAAAGATAGACTCAAATCAATTCTTGGTTTACTCGATGTTTGGCCTTTATGTTATGTTGTTCACACTTTAGATGTCCAGTCCTGGTGGCGTGGGGGAATATTGGTCAATCATCACCTCTTGAGCTAGTTTTTAAAATTGATTTAGGCCCAAAAATTCATTGTTTTATCATGGTACCAGAGTTAACTTTGTTGTGTGGGGATATTGGAATCCCAACATCTTCACATTTGTTTGACTTAAAATCCTTGATCCGCTTCTAAAAATTACATTCTTGTTTGTTTGTACAGCTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGAGTAAGTTTCCCAGTCGACCCATCTTACTTGTCGGTATACAGAAGTTAAAACTCTTTGAATAAACCAATACTAAAGTTTGATATTTTTTGTGTGTTTGGTGATTAATGCAGCATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAGGTATGTCATGTCACGCTTGGTTACAATTAATATTCTACTACCTGTCTCGTTCATCTAAAAACTTAAACTAATAGAATGACGATGAGACTCTTTAAGCCACGAATATCTTAACATTGTTACTGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGATGGAGATTAAGGAAGAAGAGAAGAAGAAGTGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTATAATGAATCTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTAACTAACTAATGGAAATATAACTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACACCCCCCCTCAAGTTGGAGGTGTAGCAAGCAGATCCAACTTGCTTAAGATTGCTGAATGCTTCACTCCAGTGAGTGCTTTGGTTAGAATGTCAGCAAATTGTTCACCAGTTCCAATATGATGCAATGAGATTAGTCCTTCTTGAAGCTTAGCTCTCACAAAATGGCAATCGACTTCAATATGCTTAGTTCTTTCATGGAATACAGGATTCTTGGCAATTTGTAATGCTGATTGGCTATCACAGAAAACAGGAAAAGGACTAGCACATGGCACAGTTAGCTCTTCAAACAATCTGCTTAACCATAGCAATTCCCCTACTACTTTCCTAATAGACCTATATTCAGCTTCAGCTGAAGATAGAGATATAGTTTCTTGTTTCTTCGATTTCTAGCTGACAGGACTTGATCCCAACAACACAATATAACCAGTAACAGACTTCCTTGAGTCAGGACAGGATGCCCAGTCTGAGTCACAAAAGGCTTGGACCTGGTAATCATTAGTAGAAGACATGAGTAAACCCAAGGTTGGATCCTTTTTAAGGTACCTAAGTAGATGATATGCAGCCTGCAAAAGAGGTTCTCTAGGCTCTTGCATAAACTGACTCAGATGTTGTACTCCATATGCAATATCTAATCTTGTATTGGTGAGAAAATTTAACTTTCCAATCAACTTTCTATATGACTTAGGATTCTCCAAAAGTTTCCCTTCATTGGCTTTGAGCTTGATGGTAGAATCAAGAGGAGAAGCAAGACTAGAGTATGTAGTGCAGTTATACTCTTTGAGAAGATCAAGCACAAATTTTCTCTGGGAGATAAGCATTCCAGCTTCTGTATATAGTATTTCCAGGCCCAAAAAATAGTGCAGCTTTCCCAAATCCTTGATTTTGAATTGGTTATGAAGATAGTTCTTTAACTGATCAATTTCTTCAGCATCATTTGCAGTAAGTAGAATATCATCTACATATACAGCTATAAACACAGTAGAAGAACCTTGTTTTCTATAGAACAAAAAGTAGTCATTCAAGGAGTTGTTGTATCCCCTAGACTTTAAGGCATCAGACAACTTAGCACACCATTGTCTGCTGGCCTGTTTTAATCCATATAGGGACTTGTTAAGCTTACAAACCATGCCTTTAGTTGTAACATCCAATCCCTGTGGAATATCCATATATACTTCTTCATGCAGCTCTCCATGAAGAAAAGCATTATTAACATCTAACTGGTATATATTCCAGTGCTTCTTTACTGCAGTGGCTATCAAAACTCTCACAGTTGTCATTTTGATGACTGGAGAGAAAGTTTCTATATAATCTACTCCATAATGCTGAGTGTAACCCTTTACAACTAGCCTTGCTTTGTACCTTTCTATACTCCCATCAGCCTTATGTTTTACCTTGTAAACTCATCTACATCCAATAGCCTTTTTACCAGTAGGAAGTGGCATAAGTTCCCAAGTATCATTGTCATGTAATGCAGTCAATTCTTGTGTCATTGCATCTTGCCAGGCAGGATTCATTGCAGCCTCATTAAATGATGATGGTTCACAATCATGTGACACACTCAATATAAGTGATTGATTGTCAGGATACAAGGATGTAGAAGCTATATGATGGTGATGTGAAAAAGAGGCATGTAAAGAGGTCATATAGTCTTTAAGGTAAACTGGAGGTTTATGAGTTCTAGTAGATTTTCTGATGGGAGGATCATATTCTGAGGATGTGAGGTTTGGTGAAGGAGAAGTAGTTAAAATGGGATCACATTGTTCAGGTTCTGGAGAGGTGATACCAATATTATCATTGTCAAAAAAACGTTATCAAATGTAGAACTTGAAGAAGAATTGTTGATAGGAGAATTGATCATACTAGAAAAAGGAAAAACTGTTTCATGGAACACAACATCTCTAGAAATATGTATCTTCTTACTGCTCAAACTTAACACCTTATAACCTTTAACTCCAAAAGGATATCCTAGGAATACATGAGGTGTAGCTCTAGGTTCAAATTTAGTTCTTTGATGTTTAGGTGTAGTAGGAAAACAAAGACAGCCAAAACTTTTCATGTGAGAGTATTGAGGTTCTTGATTATACATTATGGAATAAGGACACTTATTGTGAAGATATGCAGAAGGGAGTCTATTAATTATATATGTGGCTGTAAGTATGCATTCTCCCCAATACTTAGTAGGTAACTTGGAATGGAAAAGAAGAGCTCTAGCTGTTTCTAGTAGATATTTATGCTTTCTCTCTACCACACCATTTTGTTGTGGTGTATAAGGACAAGATTTCTGATGTAATATTCCTTTGGATTGAAAATAAAGGATAGATTCTTGATTCACAAACTCAAGACCATTATCTGATCTTATTTTTTGAATATTTGTCTTAAACTGATTTTCTACCATATTAACAAAGGATTTCACAATGTGTAAAGCATTGCTTTTACAACTCAACAAGTGTGTCCAAGTAGTTCTACTAAAGTCATCAACTAAGGTAATGAAGTATTTAAAATTGTCATGAGTGGGTAAATGATAAGGACCCCATAGGTCTATATGCAGAAGTTCAAAAATTCTTGATGTATTATGAGTCTTAGGTGGAAAAGAAAGCCTAGTTTGTCTGGCCATAGGGCAAATATTGCATGTAAAAGGTTGTTTAGATGAAAAAATCACAGGAATGGATGTAATCCCTTTCATCTTTATAAAAGGCACATGCCTAAGTCTGTAATGCCATAACAAATCATTACAAGAATCATGAGATAAAAGAGGTACAGAATCAGAAAGTACATTATTAGTGTCACTAGGAATTGTGTTCATTACAGTTGATCTAACATTCTGAAAATTGAACAAAGGATTGCAAGAATGATTGATGGTACTACAAGAATGAGAGAAGCATTGACATTGAGAGCCTATCTTATTGTTGTGAGAAGAACAAGACATTGAAGATGAGACTTGTGAAATGAATGGACTGTCTTTTTTCTTTTTTAAACAATCTGAGCAAAGAAAGTATAATCCATCTTGTTCTCTACCAATCTCCAGAGGCCTCTTCATTGAAGGGCCCTGCAAGGTACAAGATGAGTTAGAGAATGATGTAGTACAATTGAGATGTAGAGACAAGGAACTAATAGAAATCAAATTGTATTTAAAAGAAGGGATAAAAAGAACTCTGAACGGTGTGATCATGTCATTTATTCTAACATCTCCAACTTTAGTCACCTTAACTTTGTATCCATTTGGCAATTTAACTAACATAGGATATGGTAAGTTAGTGACATGTGAAAGATGGTTGATATTAAAGGTCATATGATGTGTAGCTCCTGAATCCAGTATCCATAAATCAGTCCTTGATTTGAGACAACCACACGACAGCTTATCAAAATCAATAGATGAGTTGCAAGCTATCATACCTGCAAAGTTTGCAGCTCCACAAGTTACTTGTTCCTCAGAATCAACATCTTCAGGTTGTCCTAATTGAATGTGTTGCAACAGATTAATAAGTTGATCATATTGTTCATTGGTGAGATTAGCACTACAGGCTGTATGAGCATCAACTTTTCCATTTGGTGATTCTGCAAAAACATTAGCTACCACCATTCTTTTACCTCTAGCATACCTACTGCTTGTATTGTAATTGGTTTGTACCCTTTGATTTTGATTAACACCTTGACCATTAGATGAGTTATTTTGATTGGGATAGCCATGTAACTTGTAACATTTATCAATAATATGCCCTGATCTCTTGCAATGCTCACAAAAAGGTCTAGGCTTATTGTTTGCAGGATAATTGCTTGGTGCATAATTTGTTCTAAATCTTCCTCCTGTCGAGTTTGATGAACTAGCATTGGCAGAACTTGATGGATTAGATGAACCACCACGTATGGATGAATTCATTGAACTTCCTTCAGCAAACATTTGACTATGTGGCTTAAATTCCCTTTGTTTCTCTTCTTGTACAAGTAATGCAAAGGCTTGAGCCATAGATGGTAGTGGATTCATCATCAGAATATTACCTCTAATAACAGTATAGACTTCATTAAGCCCCATTAAAAATTGAATCAATCTTCGATCTTGTTCAGCCTTGTGCATAATTTCTTTACCTCCACAGCTACAGGCACAACTACACTGGTTTTTGATACTCAGATTACTCAACTCCTCCCAGAGCTTCTTCATCCTAGTGTAGTATACAGTAACATCAAGAACTCCCTGACTCAGATCATTGATATCCCTTTGAATTTGAAACAATTTGGCACCATTCGTTTGATCATATCGATCTTCTAACTCTTTCCATAGTTCTACTGCATCAGACACATACTCTACACTGTCTGCAATGTCTTTGCTAAGAGAGTTTAGGATCCAAGATATTACCATGTTATCACATCTCTCCCACTGACAATATTGTGGAGATGTTGAAGAAGGGCGTTTGAACTCTCCAGTAATGAATCCTAACTTGTTTTTCACAGATAAAGATCTCATTACGCCTCGTCGCCATGATCGATAACCAATTCCTTCAAAAGCTACTGGAACTAGGGTCAAACTTGGATTATCAGATGTATGTATGTAGAGAGGGTTACTAATATCGATTGTGTTCCCTCCTGTTCCTCCTGTTCCTGATATGGAAGCTTGGCCAGAAACTTCAACCATAATGAATTCAATTCACAGGAACCAAATAATAGAATGCTGAAGAAAATCAACAAGAAGAAGGATTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTCGATTTCTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTTCGATTTTTCAGAGATGATAAGAACAGTGATCTACACCTGCTTTGATACCATGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGAAGGAGATTAAGGAAGAAGAGAAGAAGAAGCGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTACAATGAATTTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTGACTAACTAATGGAAGCTAATAACTAACTAATGGAAATATAACTAACTAATTGAAAAGCTGTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACAGTTACAATAAATGTTGTGCAGGGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATAAACAATGCC</genome_strand>
        <mrna_strand>ATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA..............................................................................................................CATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E612842" ref_strand="+" ref_description="SGN-E612842 [62609]">
      <seq>attttttggataacaatgggaagagttgaagcaaacaatgaagaagaaacctctcaggcagagagtggtactgaaccagctgcctcacaacctcaacagtttcaaggagtacaaggtgtatatcagtcaccatcacacttaacaattggagctccttggagtactggcttatttgattgtcatttggaccaaattaatgctgttatgacggcgttcttaccttgtgtaacatttggacaaatagcagaagtccttgatgcaggacaaatgacatgccctttagggactttcatatacatgctgatgatgcctgctatttgctctcagtggatcatgggctcaaaatatagaacccaattaagacaaagatataatctagtagaagctccttattcagacatgatttcccatatgttctgtccatgttgctctctttgtcaagaattcagagagcttcgaaacaggggacttgatcccgctctagggtggaatggtatagttgctcagcaacactatgggaaccaacaagtgaatcaagctcctcaagtacaatccatgtcaaagtaaatttcaagattgtgattctttatttgtttgatttgaggttgtagtgtgctagtcattttttttgcaacaaccagattctgttcatgtttgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38374" stop="30992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38074" g_stop="37876" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37875" i_stop="37448" i_length="428">
            <donor d_prob="0.894" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37447" g_stop="37376" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="271" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37375" i_stop="37266" i_length="110">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37265" g_stop="37053" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="484" r_length="213" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37052" i_stop="31458" i_length="5595">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31457" g_stop="31323" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="618" r_length="134" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E612842" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38074" e_stop="37876"/>
          <exon e_start="37447" e_stop="37376"/>
          <exon e_start="37265" e_stop="37053"/>
          <exon e_start="31457" e_stop="31323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATGGTAAATTAAGTTTATTACTGTCATTGTTAAGTGTCCTATTTGTGTGGGATGAGTTAGTTGGTCTCTTGTTAAATGTTTTAGGGGAATCTGAGTTAGCTTTTGAGGTTGAGTGAGACTGAATGTTCATTTATCTTTCATGGTATCAAAGATAGACTCAAATCAATTCTTGGTTTACTCGATGTTTGGCCTTTATGTTATGTTGTTCACACTTTAGATGTCCAGTCCTGGTGGCGTGGGGGAATATTGGTCAATCATCACCTCTTGAGCTAGTTTTTAAAATTGATTTAGGCCCAAAAATTCATTGTTTTATCATGGTACCAGAGTTAACTTTGTTGTGTGGGGATATTGGAATCCCAACATCTTCACATTTGTTTGACTTAAAATCCTTGATCCGCTTCTAAAAATTACATTCTTGTTTGTTTGTACAGCTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGAGTAAGTTTCCCAGTCGACCCATCTTACTTGTCGGTATACAGAAGTTAAAACTCTTTGAATAAACCAATACTAAAGTTTGATATTTTTTGTGTGTTTGGTGATTAATGCAGCATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAGGTATGTCATGTCACGCTTGGTTACAATTAATATTCTACTACCTGTCTCGTTCATCTAAAAACTTAAACTAATAGAATGACGATGAGACTCTTTAAGCCACGAATATCTTAACATTGTTACTGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGATGGAGATTAAGGAAGAAGAGAAGAAGAAGTGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTATAATGAATCTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTAACTAACTAATGGAAATATAACTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACACCCCCCCTCAAGTTGGAGGTGTAGCAAGCAGATCCAACTTGCTTAAGATTGCTGAATGCTTCACTCCAGTGAGTGCTTTGGTTAGAATGTCAGCAAATTGTTCACCAGTTCCAATATGATGCAATGAGATTAGTCCTTCTTGAAGCTTAGCTCTCACAAAATGGCAATCGACTTCAATATGCTTAGTTCTTTCATGGAATACAGGATTCTTGGCAATTTGTAATGCTGATTGGCTATCACAGAAAACAGGAAAAGGACTAGCACATGGCACAGTTAGCTCTTCAAACAATCTGCTTAACCATAGCAATTCCCCTACTACTTTCCTAATAGACCTATATTCAGCTTCAGCTGAAGATAGAGATATAGTTTCTTGTTTCTTCGATTTCTAGCTGACAGGACTTGATCCCAACAACACAATATAACCAGTAACAGACTTCCTTGAGTCAGGACAGGATGCCCAGTCTGAGTCACAAAAGGCTTGGACCTGGTAATCATTAGTAGAAGACATGAGTAAACCCAAGGTTGGATCCTTTTTAAGGTACCTAAGTAGATGATATGCAGCCTGCAAAAGAGGTTCTCTAGGCTCTTGCATAAACTGACTCAGATGTTGTACTCCATATGCAATATCTAATCTTGTATTGGTGAGAAAATTTAACTTTCCAATCAACTTTCTATATGACTTAGGATTCTCCAAAAGTTTCCCTTCATTGGCTTTGAGCTTGATGGTAGAATCAAGAGGAGAAGCAAGACTAGAGTATGTAGTGCAGTTATACTCTTTGAGAAGATCAAGCACAAATTTTCTCTGGGAGATAAGCATTCCAGCTTCTGTATATAGTATTTCCAGGCCCAAAAAATAGTGCAGCTTTCCCAAATCCTTGATTTTGAATTGGTTATGAAGATAGTTCTTTAACTGATCAATTTCTTCAGCATCATTTGCAGTAAGTAGAATATCATCTACATATACAGCTATAAACACAGTAGAAGAACCTTGTTTTCTATAGAACAAAAAGTAGTCATTCAAGGAGTTGTTGTATCCCCTAGACTTTAAGGCATCAGACAACTTAGCACACCATTGTCTGCTGGCCTGTTTTAATCCATATAGGGACTTGTTAAGCTTACAAACCATGCCTTTAGTTGTAACATCCAATCCCTGTGGAATATCCATATATACTTCTTCATGCAGCTCTCCATGAAGAAAAGCATTATTAACATCTAACTGGTATATATTCCAGTGCTTCTTTACTGCAGTGGCTATCAAAACTCTCACAGTTGTCATTTTGATGACTGGAGAGAAAGTTTCTATATAATCTACTCCATAATGCTGAGTGTAACCCTTTACAACTAGCCTTGCTTTGTACCTTTCTATACTCCCATCAGCCTTATGTTTTACCTTGTAAACTCATCTACATCCAATAGCCTTTTTACCAGTAGGAAGTGGCATAAGTTCCCAAGTATCATTGTCATGTAATGCAGTCAATTCTTGTGTCATTGCATCTTGCCAGGCAGGATTCATTGCAGCCTCATTAAATGATGATGGTTCACAATCATGTGACACACTCAATATAAGTGATTGATTGTCAGGATACAAGGATGTAGAAGCTATATGATGGTGATGTGAAAAAGAGGCATGTAAAGAGGTCATATAGTCTTTAAGGTAAACTGGAGGTTTATGAGTTCTAGTAGATTTTCTGATGGGAGGATCATATTCTGAGGATGTGAGGTTTGGTGAAGGAGAAGTAGTTAAAATGGGATCACATTGTTCAGGTTCTGGAGAGGTGATACCAATATTATCATTGTCAAAAAAACGTTATCAAATGTAGAACTTGAAGAAGAATTGTTGATAGGAGAATTGATCATACTAGAAAAAGGAAAAACTGTTTCATGGAACACAACATCTCTAGAAATATGTATCTTCTTACTGCTCAAACTTAACACCTTATAACCTTTAACTCCAAAAGGATATCCTAGGAATACATGAGGTGTAGCTCTAGGTTCAAATTTAGTTCTTTGATGTTTAGGTGTAGTAGGAAAACAAAGACAGCCAAAACTTTTCATGTGAGAGTATTGAGGTTCTTGATTATACATTATGGAATAAGGACACTTATTGTGAAGATATGCAGAAGGGAGTCTATTAATTATATATGTGGCTGTAAGTATGCATTCTCCCCAATACTTAGTAGGTAACTTGGAATGGAAAAGAAGAGCTCTAGCTGTTTCTAGTAGATATTTATGCTTTCTCTCTACCACACCATTTTGTTGTGGTGTATAAGGACAAGATTTCTGATGTAATATTCCTTTGGATTGAAAATAAAGGATAGATTCTTGATTCACAAACTCAAGACCATTATCTGATCTTATTTTTTGAATATTTGTCTTAAACTGATTTTCTACCATATTAACAAAGGATTTCACAATGTGTAAAGCATTGCTTTTACAACTCAACAAGTGTGTCCAAGTAGTTCTACTAAAGTCATCAACTAAGGTAATGAAGTATTTAAAATTGTCATGAGTGGGTAAATGATAAGGACCCCATAGGTCTATATGCAGAAGTTCAAAAATTCTTGATGTATTATGAGTCTTAGGTGGAAAAGAAAGCCTAGTTTGTCTGGCCATAGGGCAAATATTGCATGTAAAAGGTTGTTTAGATGAAAAAATCACAGGAATGGATGTAATCCCTTTCATCTTTATAAAAGGCACATGCCTAAGTCTGTAATGCCATAACAAATCATTACAAGAATCATGAGATAAAAGAGGTACAGAATCAGAAAGTACATTATTAGTGTCACTAGGAATTGTGTTCATTACAGTTGATCTAACATTCTGAAAATTGAACAAAGGATTGCAAGAATGATTGATGGTACTACAAGAATGAGAGAAGCATTGACATTGAGAGCCTATCTTATTGTTGTGAGAAGAACAAGACATTGAAGATGAGACTTGTGAAATGAATGGACTGTCTTTTTTCTTTTTTAAACAATCTGAGCAAAGAAAGTATAATCCATCTTGTTCTCTACCAATCTCCAGAGGCCTCTTCATTGAAGGGCCCTGCAAGGTACAAGATGAGTTAGAGAATGATGTAGTACAATTGAGATGTAGAGACAAGGAACTAATAGAAATCAAATTGTATTTAAAAGAAGGGATAAAAAGAACTCTGAACGGTGTGATCATGTCATTTATTCTAACATCTCCAACTTTAGTCACCTTAACTTTGTATCCATTTGGCAATTTAACTAACATAGGATATGGTAAGTTAGTGACATGTGAAAGATGGTTGATATTAAAGGTCATATGATGTGTAGCTCCTGAATCCAGTATCCATAAATCAGTCCTTGATTTGAGACAACCACACGACAGCTTATCAAAATCAATAGATGAGTTGCAAGCTATCATACCTGCAAAGTTTGCAGCTCCACAAGTTACTTGTTCCTCAGAATCAACATCTTCAGGTTGTCCTAATTGAATGTGTTGCAACAGATTAATAAGTTGATCATATTGTTCATTGGTGAGATTAGCACTACAGGCTGTATGAGCATCAACTTTTCCATTTGGTGATTCTGCAAAAACATTAGCTACCACCATTCTTTTACCTCTAGCATACCTACTGCTTGTATTGTAATTGGTTTGTACCCTTTGATTTTGATTAACACCTTGACCATTAGATGAGTTATTTTGATTGGGATAGCCATGTAACTTGTAACATTTATCAATAATATGCCCTGATCTCTTGCAATGCTCACAAAAAGGTCTAGGCTTATTGTTTGCAGGATAATTGCTTGGTGCATAATTTGTTCTAAATCTTCCTCCTGTCGAGTTTGATGAACTAGCATTGGCAGAACTTGATGGATTAGATGAACCACCACGTATGGATGAATTCATTGAACTTCCTTCAGCAAACATTTGACTATGTGGCTTAAATTCCCTTTGTTTCTCTTCTTGTACAAGTAATGCAAAGGCTTGAGCCATAGATGGTAGTGGATTCATCATCAGAATATTACCTCTAATAACAGTATAGACTTCATTAAGCCCCATTAAAAATTGAATCAATCTTCGATCTTGTTCAGCCTTGTGCATAATTTCTTTACCTCCACAGCTACAGGCACAACTACACTGGTTTTTGATACTCAGATTACTCAACTCCTCCCAGAGCTTCTTCATCCTAGTGTAGTATACAGTAACATCAAGAACTCCCTGACTCAGATCATTGATATCCCTTTGAATTTGAAACAATTTGGCACCATTCGTTTGATCATATCGATCTTCTAACTCTTTCCATAGTTCTACTGCATCAGACACATACTCTACACTGTCTGCAATGTCTTTGCTAAGAGAGTTTAGGATCCAAGATATTACCATGTTATCACATCTCTCCCACTGACAATATTGTGGAGATGTTGAAGAAGGGCGTTTGAACTCTCCAGTAATGAATCCTAACTTGTTTTTCACAGATAAAGATCTCATTACGCCTCGTCGCCATGATCGATAACCAATTCCTTCAAAAGCTACTGGAACTAGGGTCAAACTTGGATTATCAGATGTATGTATGTAGAGAGGGTTACTAATATCGATTGTGTTCCCTCCTGTTCCTCCTGTTCCTGATATGGAAGCTTGGCCAGAAACTTCAACCATAATGAATTCAATTCACAGGAACCAAATAATAGAATGCTGAAGAAAATCAACAAGAAGAAGGATTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTCGATTTCTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTTCGATTTTTCAGAGATGATAAGAACAGTGATCTACACCTGCTTTGATACCATGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGAAGGAGATTAAGGAAGAAGAGAAGAAGAAGCGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTACAATGAATTTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTGACTAACTAATGGAAGCTAATAACTAACTAATGGAAATATAACTAACTAATTGAAAAGCTGTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACAGTTACAATAAATGTTGTGCAGGGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTA</genome_strand>
        <mrna_strand>ATTTTTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGAAGAAACCTCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAACCTCAACAGTTTCAAGGAGTACAAGGTGTATATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATTTGGACCAAATTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA..............................................................................................................CATGCCCTTTAGGGACTTTCATATACATGCTGATGATGCCTGCTATTTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTAAGACAAAGATATAATCTAGTAGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATGGTATAGTTGCTCAGCAACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAAAGT-AAATTTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTAGTGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E284841" ref_strand="+" ref_description="SGN-E284841 [cLER-19-C22]">
      <seq>atactatttggataacaatgggaagagttgaagcaaacaatgaaggagaaacatctcaggcagagagtggtactgaaccagctgcctcacagcctcaacagttccaaggagtacaaagtgtgtatcagtcaccatcacacttaacaattggagctccttggagtactggcttatttgattgtcatctggaccaaactaatgctgtcatgacggcgttcttaccttgagtaacatttggacaaatagcagaagtccttgatgcaggacaaatgacatgccctttggggactttcatatacatgctgatgatgcctgctgtctgctctcagtggatcatgggctcaaaatatagaacccaattgagacaaagatataatctagtggaagctccttattcagacatgatttcccatatgttctgtccatgtggctctctttgtcaagaattcagagagcttcgaaacaggggacttgatcccgctctagggtggaatggtatagttgctcagcgacactatgggaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38376" stop="31119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38076" g_stop="37876" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37875" i_stop="37448" i_length="428">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37447" g_stop="37376" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="273" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37375" i_stop="37266" i_length="110">
            <donor d_prob="0.610" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37265" g_stop="37053" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="486" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37052" i_stop="31458" i_length="5595">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31457" g_stop="31419" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="525" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E284841" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38076" e_stop="37876"/>
          <exon e_start="37447" e_stop="37376"/>
          <exon e_start="37265" e_stop="37053"/>
          <exon e_start="31457" e_stop="31419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATGGTAAATTAAGTTTATTACTGTCATTGTTAAGTGTCCTATTTGTGTGGGATGAGTTAGTTGGTCTCTTGTTAAATGTTTTAGGGGAATCTGAGTTAGCTTTTGAGGTTGAGTGAGACTGAATGTTCATTTATCTTTCATGGTATCAAAGATAGACTCAAATCAATTCTTGGTTTACTCGATGTTTGGCCTTTATGTTATGTTGTTCACACTTTAGATGTCCAGTCCTGGTGGCGTGGGGGAATATTGGTCAATCATCACCTCTTGAGCTAGTTTTTAAAATTGATTTAGGCCCAAAAATTCATTGTTTTATCATGGTACCAGAGTTAACTTTGTTGTGTGGGGATATTGGAATCCCAACATCTTCACATTTGTTTGACTTAAAATCCTTGATCCGCTTCTAAAAATTACATTCTTGTTTGTTTGTACAGCTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGAGTAAGTTTCCCAGTCGACCCATCTTACTTGTCGGTATACAGAAGTTAAAACTCTTTGAATAAACCAATACTAAAGTTTGATATTTTTTGTGTGTTTGGTGATTAATGCAGCATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAGGTATGTCATGTCACGCTTGGTTACAATTAATATTCTACTACCTGTCTCGTTCATCTAAAAACTTAAACTAATAGAATGACGATGAGACTCTTTAAGCCACGAATATCTTAACATTGTTACTGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGATGGAGATTAAGGAAGAAGAGAAGAAGAAGTGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTATAATGAATCTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTAACTAACTAATGGAAATATAACTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACACCCCCCCTCAAGTTGGAGGTGTAGCAAGCAGATCCAACTTGCTTAAGATTGCTGAATGCTTCACTCCAGTGAGTGCTTTGGTTAGAATGTCAGCAAATTGTTCACCAGTTCCAATATGATGCAATGAGATTAGTCCTTCTTGAAGCTTAGCTCTCACAAAATGGCAATCGACTTCAATATGCTTAGTTCTTTCATGGAATACAGGATTCTTGGCAATTTGTAATGCTGATTGGCTATCACAGAAAACAGGAAAAGGACTAGCACATGGCACAGTTAGCTCTTCAAACAATCTGCTTAACCATAGCAATTCCCCTACTACTTTCCTAATAGACCTATATTCAGCTTCAGCTGAAGATAGAGATATAGTTTCTTGTTTCTTCGATTTCTAGCTGACAGGACTTGATCCCAACAACACAATATAACCAGTAACAGACTTCCTTGAGTCAGGACAGGATGCCCAGTCTGAGTCACAAAAGGCTTGGACCTGGTAATCATTAGTAGAAGACATGAGTAAACCCAAGGTTGGATCCTTTTTAAGGTACCTAAGTAGATGATATGCAGCCTGCAAAAGAGGTTCTCTAGGCTCTTGCATAAACTGACTCAGATGTTGTACTCCATATGCAATATCTAATCTTGTATTGGTGAGAAAATTTAACTTTCCAATCAACTTTCTATATGACTTAGGATTCTCCAAAAGTTTCCCTTCATTGGCTTTGAGCTTGATGGTAGAATCAAGAGGAGAAGCAAGACTAGAGTATGTAGTGCAGTTATACTCTTTGAGAAGATCAAGCACAAATTTTCTCTGGGAGATAAGCATTCCAGCTTCTGTATATAGTATTTCCAGGCCCAAAAAATAGTGCAGCTTTCCCAAATCCTTGATTTTGAATTGGTTATGAAGATAGTTCTTTAACTGATCAATTTCTTCAGCATCATTTGCAGTAAGTAGAATATCATCTACATATACAGCTATAAACACAGTAGAAGAACCTTGTTTTCTATAGAACAAAAAGTAGTCATTCAAGGAGTTGTTGTATCCCCTAGACTTTAAGGCATCAGACAACTTAGCACACCATTGTCTGCTGGCCTGTTTTAATCCATATAGGGACTTGTTAAGCTTACAAACCATGCCTTTAGTTGTAACATCCAATCCCTGTGGAATATCCATATATACTTCTTCATGCAGCTCTCCATGAAGAAAAGCATTATTAACATCTAACTGGTATATATTCCAGTGCTTCTTTACTGCAGTGGCTATCAAAACTCTCACAGTTGTCATTTTGATGACTGGAGAGAAAGTTTCTATATAATCTACTCCATAATGCTGAGTGTAACCCTTTACAACTAGCCTTGCTTTGTACCTTTCTATACTCCCATCAGCCTTATGTTTTACCTTGTAAACTCATCTACATCCAATAGCCTTTTTACCAGTAGGAAGTGGCATAAGTTCCCAAGTATCATTGTCATGTAATGCAGTCAATTCTTGTGTCATTGCATCTTGCCAGGCAGGATTCATTGCAGCCTCATTAAATGATGATGGTTCACAATCATGTGACACACTCAATATAAGTGATTGATTGTCAGGATACAAGGATGTAGAAGCTATATGATGGTGATGTGAAAAAGAGGCATGTAAAGAGGTCATATAGTCTTTAAGGTAAACTGGAGGTTTATGAGTTCTAGTAGATTTTCTGATGGGAGGATCATATTCTGAGGATGTGAGGTTTGGTGAAGGAGAAGTAGTTAAAATGGGATCACATTGTTCAGGTTCTGGAGAGGTGATACCAATATTATCATTGTCAAAAAAACGTTATCAAATGTAGAACTTGAAGAAGAATTGTTGATAGGAGAATTGATCATACTAGAAAAAGGAAAAACTGTTTCATGGAACACAACATCTCTAGAAATATGTATCTTCTTACTGCTCAAACTTAACACCTTATAACCTTTAACTCCAAAAGGATATCCTAGGAATACATGAGGTGTAGCTCTAGGTTCAAATTTAGTTCTTTGATGTTTAGGTGTAGTAGGAAAACAAAGACAGCCAAAACTTTTCATGTGAGAGTATTGAGGTTCTTGATTATACATTATGGAATAAGGACACTTATTGTGAAGATATGCAGAAGGGAGTCTATTAATTATATATGTGGCTGTAAGTATGCATTCTCCCCAATACTTAGTAGGTAACTTGGAATGGAAAAGAAGAGCTCTAGCTGTTTCTAGTAGATATTTATGCTTTCTCTCTACCACACCATTTTGTTGTGGTGTATAAGGACAAGATTTCTGATGTAATATTCCTTTGGATTGAAAATAAAGGATAGATTCTTGATTCACAAACTCAAGACCATTATCTGATCTTATTTTTTGAATATTTGTCTTAAACTGATTTTCTACCATATTAACAAAGGATTTCACAATGTGTAAAGCATTGCTTTTACAACTCAACAAGTGTGTCCAAGTAGTTCTACTAAAGTCATCAACTAAGGTAATGAAGTATTTAAAATTGTCATGAGTGGGTAAATGATAAGGACCCCATAGGTCTATATGCAGAAGTTCAAAAATTCTTGATGTATTATGAGTCTTAGGTGGAAAAGAAAGCCTAGTTTGTCTGGCCATAGGGCAAATATTGCATGTAAAAGGTTGTTTAGATGAAAAAATCACAGGAATGGATGTAATCCCTTTCATCTTTATAAAAGGCACATGCCTAAGTCTGTAATGCCATAACAAATCATTACAAGAATCATGAGATAAAAGAGGTACAGAATCAGAAAGTACATTATTAGTGTCACTAGGAATTGTGTTCATTACAGTTGATCTAACATTCTGAAAATTGAACAAAGGATTGCAAGAATGATTGATGGTACTACAAGAATGAGAGAAGCATTGACATTGAGAGCCTATCTTATTGTTGTGAGAAGAACAAGACATTGAAGATGAGACTTGTGAAATGAATGGACTGTCTTTTTTCTTTTTTAAACAATCTGAGCAAAGAAAGTATAATCCATCTTGTTCTCTACCAATCTCCAGAGGCCTCTTCATTGAAGGGCCCTGCAAGGTACAAGATGAGTTAGAGAATGATGTAGTACAATTGAGATGTAGAGACAAGGAACTAATAGAAATCAAATTGTATTTAAAAGAAGGGATAAAAAGAACTCTGAACGGTGTGATCATGTCATTTATTCTAACATCTCCAACTTTAGTCACCTTAACTTTGTATCCATTTGGCAATTTAACTAACATAGGATATGGTAAGTTAGTGACATGTGAAAGATGGTTGATATTAAAGGTCATATGATGTGTAGCTCCTGAATCCAGTATCCATAAATCAGTCCTTGATTTGAGACAACCACACGACAGCTTATCAAAATCAATAGATGAGTTGCAAGCTATCATACCTGCAAAGTTTGCAGCTCCACAAGTTACTTGTTCCTCAGAATCAACATCTTCAGGTTGTCCTAATTGAATGTGTTGCAACAGATTAATAAGTTGATCATATTGTTCATTGGTGAGATTAGCACTACAGGCTGTATGAGCATCAACTTTTCCATTTGGTGATTCTGCAAAAACATTAGCTACCACCATTCTTTTACCTCTAGCATACCTACTGCTTGTATTGTAATTGGTTTGTACCCTTTGATTTTGATTAACACCTTGACCATTAGATGAGTTATTTTGATTGGGATAGCCATGTAACTTGTAACATTTATCAATAATATGCCCTGATCTCTTGCAATGCTCACAAAAAGGTCTAGGCTTATTGTTTGCAGGATAATTGCTTGGTGCATAATTTGTTCTAAATCTTCCTCCTGTCGAGTTTGATGAACTAGCATTGGCAGAACTTGATGGATTAGATGAACCACCACGTATGGATGAATTCATTGAACTTCCTTCAGCAAACATTTGACTATGTGGCTTAAATTCCCTTTGTTTCTCTTCTTGTACAAGTAATGCAAAGGCTTGAGCCATAGATGGTAGTGGATTCATCATCAGAATATTACCTCTAATAACAGTATAGACTTCATTAAGCCCCATTAAAAATTGAATCAATCTTCGATCTTGTTCAGCCTTGTGCATAATTTCTTTACCTCCACAGCTACAGGCACAACTACACTGGTTTTTGATACTCAGATTACTCAACTCCTCCCAGAGCTTCTTCATCCTAGTGTAGTATACAGTAACATCAAGAACTCCCTGACTCAGATCATTGATATCCCTTTGAATTTGAAACAATTTGGCACCATTCGTTTGATCATATCGATCTTCTAACTCTTTCCATAGTTCTACTGCATCAGACACATACTCTACACTGTCTGCAATGTCTTTGCTAAGAGAGTTTAGGATCCAAGATATTACCATGTTATCACATCTCTCCCACTGACAATATTGTGGAGATGTTGAAGAAGGGCGTTTGAACTCTCCAGTAATGAATCCTAACTTGTTTTTCACAGATAAAGATCTCATTACGCCTCGTCGCCATGATCGATAACCAATTCCTTCAAAAGCTACTGGAACTAGGGTCAAACTTGGATTATCAGATGTATGTATGTAGAGAGGGTTACTAATATCGATTGTGTTCCCTCCTGTTCCTCCTGTTCCTGATATGGAAGCTTGGCCAGAAACTTCAACCATAATGAATTCAATTCACAGGAACCAAATAATAGAATGCTGAAGAAAATCAACAAGAAGAAGGATTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTCGATTTCTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTTCGATTTTTCAGAGATGATAAGAACAGTGATCTACACCTGCTTTGATACCATGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGAAGGAGATTAAGGAAGAAGAGAAGAAGAAGCGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTACAATGAATTTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTGACTAACTAATGGAAGCTAATAACTAACTAATGGAAATATAACTAACTAATTGAAAAGCTGTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACAGTTACAATAAATGTTGTGCAGGGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACC</genome_strand>
        <mrna_strand>ATACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCATGACGGCGTTCTTACCTTGAGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA..............................................................................................................CATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTGGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E404989" ref_strand="+" ref_description="SGN-E404989 [PPC-16-G5]">
      <seq>tttggataacaatgggaagagttgaagcaaacaatgaagaagaaacctctcaggcagagagtggtactgaaccagctgcctcacaacctcaacagtttcaaggagtacaaggtgtatatcagtcaccatcacacttaacaattggagctccttggagtactggcttatttgattgtcatttggaccaaattaatgctgttatgacggcgttcttaccttgtgtaacatttggacaaatagcagaagtccttgatgcaggacaaatgacatgccctttagggactttcatatacatgctgatgatgcctgctatttgctctcagtggatcatgggctcaaaatatagaacccaattaagacaaagatataatctagtagaagctccttattcagacatgatttcccatatgttctggccatgttgctctctttgtcaagaattcagagagcttcgaaacaggggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38370" stop="36767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38070" g_stop="37876" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37875" i_stop="37448" i_length="428">
            <donor d_prob="0.894" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37447" g_stop="37376" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="267" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37375" i_stop="37266" i_length="110">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37265" g_stop="37067" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="466" r_length="199" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E404989" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38070" e_stop="37876"/>
          <exon e_start="37447" e_stop="37376"/>
          <exon e_start="37265" e_stop="37067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATGGTAAATTAAGTTTATTACTGTCATTGTTAAGTGTCCTATTTGTGTGGGATGAGTTAGTTGGTCTCTTGTTAAATGTTTTAGGGGAATCTGAGTTAGCTTTTGAGGTTGAGTGAGACTGAATGTTCATTTATCTTTCATGGTATCAAAGATAGACTCAAATCAATTCTTGGTTTACTCGATGTTTGGCCTTTATGTTATGTTGTTCACACTTTAGATGTCCAGTCCTGGTGGCGTGGGGGAATATTGGTCAATCATCACCTCTTGAGCTAGTTTTTAAAATTGATTTAGGCCCAAAAATTCATTGTTTTATCATGGTACCAGAGTTAACTTTGTTGTGTGGGGATATTGGAATCCCAACATCTTCACATTTGTTTGACTTAAAATCCTTGATCCGCTTCTAAAAATTACATTCTTGTTTGTTTGTACAGCTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGAGTAAGTTTCCCAGTCGACCCATCTTACTTGTCGGTATACAGAAGTTAAAACTCTTTGAATAAACCAATACTAAAGTTTGATATTTTTTGTGTGTTTGGTGATTAATGCAGCATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACT</genome_strand>
        <mrna_strand>TTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGAAGAAACCTCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAACCTCAACAGTTTCAAGGAGTACAAGGTGTATATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATTTGGACCAAATTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA..............................................................................................................CATGCCCTTTAGGGACTTTCATATACATGCTGATGATGCCTGCTATTTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTAAGACAAAGATATAATCTAGTAGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGGCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E400743" ref_strand="+" ref_description="SGN-E400743 [PPC-2-C3]">
      <seq>ataacaatgggaagagttgaagcaaacaatgaagaagaaacctctcaggcagagagtggtactgaaccagctgcctcacaacctcaacagtttcaaggagtacaaggtgtatatcagtcaccatcacacttaacaattggagctccttggagtactggcttatttgattgtcatttggaccaaattaatgctgttatgacggcgttcttaccttgtgtaacatttggacaaatagcagaagtccttgatgcaggacaaatgacatgccctttagggactttcatatacatgctgatgatgcctgctatttgctctcagtggatcatgggctcaaaatatagaacccaattaagacaaagatataatctagtagaagctcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38365" stop="36845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38065" g_stop="37876" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37875" i_stop="37448" i_length="428">
            <donor d_prob="0.894" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37447" g_stop="37376" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="262" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37375" i_stop="37266" i_length="110">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37265" g_stop="37145" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="383" r_length="121" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E400743" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38065" e_stop="37876"/>
          <exon e_start="37447" e_stop="37376"/>
          <exon e_start="37265" e_stop="37145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATGGTAAATTAAGTTTATTACTGTCATTGTTAAGTGTCCTATTTGTGTGGGATGAGTTAGTTGGTCTCTTGTTAAATGTTTTAGGGGAATCTGAGTTAGCTTTTGAGGTTGAGTGAGACTGAATGTTCATTTATCTTTCATGGTATCAAAGATAGACTCAAATCAATTCTTGGTTTACTCGATGTTTGGCCTTTATGTTATGTTGTTCACACTTTAGATGTCCAGTCCTGGTGGCGTGGGGGAATATTGGTCAATCATCACCTCTTGAGCTAGTTTTTAAAATTGATTTAGGCCCAAAAATTCATTGTTTTATCATGGTACCAGAGTTAACTTTGTTGTGTGGGGATATTGGAATCCCAACATCTTCACATTTGTTTGACTTAAAATCCTTGATCCGCTTCTAAAAATTACATTCTTGTTTGTTTGTACAGCTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGAGTAAGTTTCCCAGTCGACCCATCTTACTTGTCGGTATACAGAAGTTAAAACTCTTTGAATAAACCAATACTAAAGTTTGATATTTTTTGTGTGTTTGGTGATTAATGCAGCATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTA</genome_strand>
        <mrna_strand>ATAACAATGGGAAGAGTTGAAGCAAACAATGAAGAAGAAACCTCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAACCTCAACAGTTTCAAGGAGTACAAGGTGTATATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATTTGGACCAAATTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA..............................................................................................................CATGCCCTTTAGGGACTTTCATATACATGCTGATGATGCCTGCTATTTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTAAGACAAAGATATAATCTAGTAGAAGCTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E307886" ref_strand="+" ref_description="SGN-E307886 [cLEY-20-G22]">
      <seq>tttggataacaatgggaagagttgaagcaaacaatgaaggagaaacatcttaggcagagagtggtactgaaccagctgcctcacaacctcaacagttccaaggagtacaaagtgtgtatcattcaccatcacacttaacaattggagctccttgtagtactggcttatttgattgacatctggaccaaactaatgctgacatgactgcgtgcttaccttgtgtcacattcggacaaatagctgaagtccttgatgcaagacacatgacatgcccttcggggactttcatatacatactgatgatgcctgctgtctgctctcagtggatcagagggctctacatatgacacccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38370" stop="36877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38070" g_stop="37876" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37875" i_stop="37448" i_length="428">
            <donor d_prob="0.894" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37447" g_stop="37376" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="267" r_length="72" r_score="0.889"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37375" i_stop="37266" i_length="110">
            <donor d_prob="0.610" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37265" g_stop="37178" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="356" r_length="89" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E307886" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38070" e_stop="37876"/>
          <exon e_start="37447" e_stop="37376"/>
          <exon e_start="37265" e_stop="37178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATGGTAAATTAAGTTTATTACTGTCATTGTTAAGTGTCCTATTTGTGTGGGATGAGTTAGTTGGTCTCTTGTTAAATGTTTTAGGGGAATCTGAGTTAGCTTTTGAGGTTGAGTGAGACTGAATGTTCATTTATCTTTCATGGTATCAAAGATAGACTCAAATCAATTCTTGGTTTACTCGATGTTTGGCCTTTATGTTATGTTGTTCACACTTTAGATGTCCAGTCCTGGTGGCGTGGGGGAATATTGGTCAATCATCACCTCTTGAGCTAGTTTTTAAAATTGATTTAGGCCCAAAAATTCATTGTTTTATCATGGTACCAGAGTTAACTTTGTTGTGTGGGGATATTGGAATCCCAACATCTTCACATTTGTTTGACTTAAAATCCTTGATCCGCTTCTAAAAATTACATTCTTGTTTGTTTGTACAGCTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGAGTAAGTTTCCCAGTCGACCCATCTTACTTGTCGGTATACAGAAGTTAAAACTCTTTGAATAAACCAATACTAAAGTTTGATATTTTTTGTGTGTTTGGTGATTAATGCAGCATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCA-TGGGCTCAAAATATAGAACCCAATT</genome_strand>
        <mrna_strand>TTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTTAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAACCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCATTCACCATCACACTTAACAATTGGAGCTCCTTGTAGTACTGGCTTATTTGATTGACATCTGGACCAAACTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACATGACTGCGTGCTTACCTTGTGTCACATTCGGACAAATAGCTGAAGTCCTTGATGCAAGACACATGA..............................................................................................................CATGCCCTTCGGGGACTTTCATATACATACTGATGATGCCTGCTGTCTGCTCTCAGTGGATCAGAGGGCTCTACATATGACACCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E289118" ref_strand="+" ref_description="SGN-E289118 [cLES-18-O8]">
      <seq>tactatttggataacaatgggaagagttgaagcaaacaatgaaggagaaacatctcaggcagagagtggtactgaaccagctgcctcacagcctcaacagttccaaggagtacaaagtgtgtatcagtcaccatcacacttaacaattggagctccttggagtactggcttatttgattgtcatctggaccaaactaatgctgtcatgacggcgttcttaccttgtgtaacatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38375" stop="37111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38075" g_stop="37876" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37875" i_stop="37448" i_length="428">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37447" g_stop="37411" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="237" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E289118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38075" e_stop="37876"/>
          <exon e_start="37447" e_stop="37411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATGGTAAATTAAGTTTATTACTGTCATTGTTAAGTGTCCTATTTGTGTGGGATGAGTTAGTTGGTCTCTTGTTAAATGTTTTAGGGGAATCTGAGTTAGCTTTTGAGGTTGAGTGAGACTGAATGTTCATTTATCTTTCATGGTATCAAAGATAGACTCAAATCAATTCTTGGTTTACTCGATGTTTGGCCTTTATGTTATGTTGTTCACACTTTAGATGTCCAGTCCTGGTGGCGTGGGGGAATATTGGTCAATCATCACCTCTTGAGCTAGTTTTTAAAATTGATTTAGGCCCAAAAATTCATTGTTTTATCATGGTACCAGAGTTAACTTTGTTGTGTGGGGATATTGGAATCCCAACATCTTCACATTTGTTTGACTTAAAATCCTTGATCCGCTTCTAAAAATTACATTCTTGTTTGTTTGTACAGCTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGG</genome_strand>
        <mrna_strand>TACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E287627" ref_strand="+" ref_description="SGN-E287627 [cLES-9-I9]">
      <seq>tcgagtttttttttttttttttttgaaaaatctcagctaacattaatcaattgtatactacaatactaccaatatttcttgttacagcagagcagctaccagtatcttgctaattcaaaatctgtaacattatttctgtaaggaatgtttagagtagcctttccgtgtcatgctaattacaaaaatcagatcaaggtaaaaattaaaagaaaggtatacaaagataacaacaataggtactctgtagtacatatgtgatctactactggccgaggcagatgcagtttcatgctccctcaggcaatagtcaccgaccagtggagtgagcaaaaaagcagcaaaaataagcagagtgacaattgccctatgaaaactcgctttgtgacaatctttatcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="11129" stop="39782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38455" g_stop="38474" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.700"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38475" i_stop="39102" i_length="628">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39103" g_stop="39482" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="400" r_length="380" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E287627" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38455" e_stop="38474"/>
          <exon e_start="39103" e_stop="39482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTTTTTTGTTTGTTTGATTTGCATTTTAATTATACTATTCTCTTTTTGATTTTGAATCGATGCATCTTTCGAAAACAATCTCTCTAATTGTGAGATTGGCATTGATCAAGTAATATTATTTAGACTATCCTCGTATTATATTTCGCTCTTCAAAGTATTCTCTTCAGAGTCAATCTTTTATCTCTGTGCTAGGAAAATGCCCAAGGTCATATGTAAGACTTGCTGTTAACTTAGAAAATGAACAAAAAAATAATGATATTCAGAAAGGTAGTTATTCAAAGTCAACTTGCAATAGTAGAGACGTGTAGTGCATTAAAACAGAAGATTGAATATCTAATTTTTCAGACTAATTAGCCACTATTTTTCATATAATAAAACAAGACACGTTTATATCATCATTAGATAACCCTAAAGTCAACACATGACTAGATTGTACATATTTTTCATTATGGAATAATCATCTAACATTCAAACTATATCTTGTATGCATAATGATACAAGTCTACAACCAAGACTCACTTTTTTAAATTTCTAAGACATTTCCTGTGAACTTCTAGCAAGAAGCCCACTTGTTTTCAAGAAAACATTTTCCTTCGTACCAAACACACCCAACTGGAAAAATCAATGCAGAAACTGAAGACAAATATTGAAAAATCTCAGCTAACATTAATCAATTGTATACTACAATACTACCAATATTTCTTGTTACAGCAGAGCAGCTACCAGTATCTTGCTAATTCAAAATCTGTAACATTATTTCTGTAAGGAATGTTTAGAGTAGCCTTTCCGTGTCATGCTAATTACAAAAATCAGATCAAGGTAAAAATTAAAAGAAAGGTATACAAAGATAACAACAATAGGTACTCTGTAGTACATATGTGATCTACTACTGGCCGAGGCAGATGCAGTTTCATGCTCCCTCAGGCAATAGTCACCGACCAGTGGAGTGAGCAAAAAAGCAGCAAAAATAAGCAGAGTGACAATTGCCCTATGAAAACTCGCTTTGTGACAATCTTTATCTTGA</genome_strand>
        <mrna_strand>TCGAGTTTTTTTTTTTTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAAAAATCTCAGCTAACATTAATCAATTGTATACTACAATACTACCAATATTTCTTGTTACAGCAGAGCAGCTACCAGTATCTTGCTAATTCAAAATCTGTAACATTATTTCTGTAAGGAATGTTTAGAGTAGCCTTTCCGTGTCATGCTAATTACAAAAATCAGATCAAGGTAAAAATTAAAAGAAAGGTATACAAAGATAACAACAATAGGTACTCTGTAGTACATATGTGATCTACTACTGGCCGAGGCAGATGCAGTTTCATGCTCCCTCAGGCAATAGTCACCGACCAGTGGAGTGAGCAAAAAAGCAGCAAAAATAAGCAGAGTGACAATTGCCCTATGAAAACTCGCTTTGTGACAATCTTTATCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E540050" ref_strand="+" ref_description="SGN-E540050 [TUS-60-B24]">
      <seq>ctcgagtttttttttttttttttttgaaaaatctcagctaacattaatcaattgtatactacaatactaccaatatttcttgttacagcagagcagctaccagtatcttgctaattcaaaatctgtaacattatttctgtaaggaatgtttagagtagcctttccgtgtcatgctaattacaaaaatcagatcaaggtaaaaattaaaagaaaggtatacaaagataacaacaataggtactctgtagtacatatgtgatctactactggccgaggcagatgcagtttcatgctccctcaggcaatagtcaccgaccagtggagtgagcaaaaaagcagcaaaaataagcagagtgacaattgccctatgaaaactcgctttgtgacaatctttatcttgattgttcattgttgctgcctttcctgcctatgaacacactccgaaattgtacaaatcaagaaatagctatagcaaagaatttggatgttcaatcactaggaccttaacattttccaatctgaactttagtatagagtgtgatctagtcaccaactaatgagatggaagaagggcaaactcaatctcctgtaatgttttccctttcgtttccaccacattctttttcacaaaggccagtgcaaacaagcaaaatcctgcaaagatcgcataaactatttgtggtccaagatgctcaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="11128" stop="40081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38456" g_stop="38478" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.652"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38479" i_stop="39104" i_length="626">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39105" g_stop="39781" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="700" r_length="677" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E540050" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38456" e_stop="38478"/>
          <exon e_start="39105" e_stop="39781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTTTTTGTTTGTTTGATTTGCATTTTAATTATACTATTCTCTTTTTGATTTTGAATCGATGCATCTTTCGAAAACAATCTCTCTAATTGTGAGATTGGCATTGATCAAGTAATATTATTTAGACTATCCTCGTATTATATTTCGCTCTTCAAAGTATTCTCTTCAGAGTCAATCTTTTATCTCTGTGCTAGGAAAATGCCCAAGGTCATATGTAAGACTTGCTGTTAACTTAGAAAATGAACAAAAAAATAATGATATTCAGAAAGGTAGTTATTCAAAGTCAACTTGCAATAGTAGAGACGTGTAGTGCATTAAAACAGAAGATTGAATATCTAATTTTTCAGACTAATTAGCCACTATTTTTCATATAATAAAACAAGACACGTTTATATCATCATTAGATAACCCTAAAGTCAACACATGACTAGATTGTACATATTTTTCATTATGGAATAATCATCTAACATTCAAACTATATCTTGTATGCATAATGATACAAGTCTACAACCAAGACTCACTTTTTTAAATTTCTAAGACATTTCCTGTGAACTTCTAGCAAGAAGCCCACTTGTTTTCAAGAAAACATTTTCCTTCGTACCAAACACACCCAACTGGAAAAATCAATGCAGAAACTGAAGACAAATATTGAAAAATCTCAGCTAACATTAATCAATTGTATACTACAATACTACCAATATTTCTTGTTACAGCAGAGCAGCTACCAGTATCTTGCTAATTCAAAATCTGTAACATTATTTCTGTAAGGAATGTTTAGAGTAGCCTTTCCGTGTCATGCTAATTACAAAAATCAGATCAAGGTAAAAATTAAAAGAAAGGTATACAAAGATAACAACAATAGGTACTCTGTAGTACATATGTGATCTACTACTGGCCGAGGCAGATGCAGTTTCATGCTCCCTCAGGCAATAGTCACCGACCAGTGGAGTGAGCAAAAAAGCAGCAAAAATAAGCAGAGTGACAATTGCCCTATGAAAACTCGCTTTGTGACAATCTTTATCTTGATTGTTCATTGTTGCTGCCTTTCCTGCCTATGAACACACTCCGAAATTGTACAAATCAAGAAATAGCTATAGCAAAGAATTTGGATGTTCAATCACTAGGACCTTAACATTTTCCAATCTGAACTTTAGTATAGAGTGTGATCTAGTCACCAACTAATGAGATGGAAGAAGGGCAAACTCAATCTCCTGTAATGTTTTCCCTTTCGTTTCCACCACATTCTTTTTCACAAAGGCCAGTGCAAACAAGCAAAATCCTGCAAAGATCGCATAAACTATTTGTGGTCCAAGATGCTCAAGCAT</genome_strand>
        <mrna_strand>CTCGAGTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAATCTCAGCTAACATTAATCAATTGTATACTACAATACTACCAATATTTCTTGTTACAGCAGAGCAGCTACCAGTATCTTGCTAATTCAAAATCTGTAACATTATTTCTGTAAGGAATGTTTAGAGTAGCCTTTCCGTGTCATGCTAATTACAAAAATCAGATCAAGGTAAAAATTAAAAGAAAGGTATACAAAGATAACAACAATAGGTACTCTGTAGTACATATGTGATCTACTACTGGCCGAGGCAGATGCAGTTTCATGCTCCCTCAGGCAATAGTCACCGACCAGTGGAGTGAGCAAAAAAGCAGCAAAAATAAGCAGAGTGACAATTGCCCTATGAAAACTCGCTTTGTGACAATCTTTATCTTGATTGTTCATTGTTGCTGCCTTTCCTGCCTATGAACACACTCCGAAATTGTACAAATCAAGAAATAGCTATAGCAAAGAATTTGGATGTTCAATCACTAGGACCTTAACATTTTCCAATCTGAACTTTAGTATAGAGTGTGATCTAGTCACCAACTAATGAGATGGAAGAAGGGCAAACTCAATCTCCTGTAATGTTTTCCCTTTCGTTTCCACCACATTCTTTTTCACAAAGGCCAGTGCAAACAAGCAAAATCCTGCAAAGATCGCATAAACTATTTGTGGTCCAAGATGCTCAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E745656" ref_strand="+" ref_description="SGN-E745656 [GI|47105214]">
      <seq>ttttccttttttaattaatttctttctaaaacttcactaccaatatgcaatagctagtgcctcacaaaacgtttcaggaggttggcgtatatgattgggatttttgttacagtaccatagatcagatcacacaatatgagaggtggtggtcttgcagatgcttactccatgtacaagcgtgcatcaactaaagaccagttcactgattatgaagatagagaagaaaatctagatcgtgccgaaaatggtgtgtggaaagaaattggaaacccctcatggaagcggccgttgccacatatactggtggcaattatttcatcactcttgtttggctaccatcttggggtggttaatgacactctagaaagcatgtctttggaccttgacttcagtggcagcaccttggcggaaggtctagttgtgagtacatgtttgggaggtgctcttttgggctctatattcagtggttggatagcagatggggttggtcgtcggagaggctttcaactgtgtgctctaccaatgattataggtgcttctatgagtgccgcaaccagtactcttggagttatgcttcttggaaggttatttgttggaatagggatgggccttggccctgctgttgctgctctctatgttgcagaggtttcaccagcttttgttggaggcacttatgggagtttcactcagatcgccacatgccttgggctcctgggatctcttctcattggaattcctgccaaggatactgctggttggtggcgagtttgcttttggatatccaccattcctgctgcaatacttgctgttttgatggaattctgtgccgagagtcctcactggcttgttaagagaggaagaattgatttagctgaagaagagcttgaaaagcttatgggagcaccacatgttaaatatgccattgcagaaatgtcaaagacagacaaaggagatgaggtggataatgttaggtttggagagctattgtatggtcgccattttaaagtggttttcattggatctgccttatttgctttgcaacaactatctggaataaatgctgtattttatttctcttcaactgtgtttaagaaggctggagtacctacggacactgcaaatacatgtgttgggattgtaaacttaacagggtctattattgcaatgatgttgatggataggcttgggaggaaggtgcttctaattgggagttttttgggcatggcagtcgcaacaggtcttcaagtagcagctgcgagttcatttgtaccaagctttgcagtattatacctatcagttggcgggaccctactgtatgtgttagcattttctttgggtgctggtccagtccccagcctcctgctgtcagagatatttcctggccggattagagcaaaggcaatggctttatgcatggctgcacattgggtcataaattttctggtcggccttctgtttctgccgatgcttgagcatcttggaccacaaatagtttatgcgatctttgcaggattttgcttgtttgcactggcctttgtgaaaaagaatgtggtggaaacgaaagggaaaacattacaggagattgagtttgcccttcttccatctcattagttggtgactagatcacactctatactaaagttcagattggaaaatgttaaggtcctagtgattgaacatccaaattctttgctatagctatttcttgatttgtacaatttcggagtgtgttcataggcaggaaaggcagcaacaatgaacaatcaagataaagattgtcacaaagcgagttttcatagggcaattgtcactctgcttatttttgctgcttttttgctcactccactggtcggtgactattgcctgagggagcatgaaactgcatctgcctcggccagtagtagatcacatatgtactacagagtacctattgttgttatctttgtatacctttcttttaatttttaccttgatctgatttttgtaattagcatgacacggaaaggctactctaaacattccttacagaaataatgttacagattttgaattagcaagatactggtagctgctctgctgtaacaagaaatattggtagtattgtagtatacaattgattaatgttagctgagatttttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="46618" stop="28947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46318" g_stop="46239" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46238" i_stop="46108" i_length="131">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46107" g_stop="45956" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="232" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45955" i_stop="45517" i_length="439">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45516" g_stop="45405" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="344" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45404" i_stop="45282" i_length="123">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45281" g_stop="45214" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="412" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45213" i_stop="44880" i_length="334">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.179" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44879" g_stop="44747" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="545" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44746" i_stop="44342" i_length="405">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44341" g_stop="44242" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="645" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44241" i_stop="44178" i_length="64">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44177" g_stop="44065" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="758" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44064" i_stop="43808" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43807" g_stop="43714" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="852" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="43713" i_stop="42358" i_length="1356">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="42357" g_stop="42204" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="853" r_stop="1006" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="42203" i_stop="42116" i_length="88">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="42115" g_stop="41972" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1007" r_stop="1150" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="41971" i_stop="41881" i_length="91">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="41880" g_stop="41807" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1151" r_stop="1224" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="41806" i_stop="41696" i_length="111">
            <donor d_prob="0.048" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="41695" g_stop="41607" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1225" r_stop="1313" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="41606" i_stop="41209" i_length="398">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="41208" g_stop="41094" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1314" r_stop="1428" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="41093" i_stop="39818" i_length="1276">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="39817" g_stop="39091" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1429" r_stop="2155" r_length="727" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E745656" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>2155</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46318" e_stop="46239"/>
          <exon e_start="46107" e_stop="45956"/>
          <exon e_start="45516" e_stop="45405"/>
          <exon e_start="45281" e_stop="45214"/>
          <exon e_start="44879" e_stop="44747"/>
          <exon e_start="44341" e_stop="44242"/>
          <exon e_start="44177" e_stop="44065"/>
          <exon e_start="43807" e_stop="43714"/>
          <exon e_start="42357" e_stop="42204"/>
          <exon e_start="42115" e_stop="41972"/>
          <exon e_start="41880" e_stop="41807"/>
          <exon e_start="41695" e_stop="41607"/>
          <exon e_start="41208" e_stop="41094"/>
          <exon e_start="39817" e_stop="39091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTTTTTTAATTAATTTCTTTCTAAAACTTCACTACCAATATGCAATAGCTAGTGCCTCACAAAACGTTTCAGGAGGTAATTAACAAGTGTATTATATGTTAATGGCACATAATTAAAGAATGAAATGCAAAAGATTAGATTTTTTATTTATTTTTTTGATTGAAGTATGGAATTTTGCCTTGATATCAGATCTGGCATTTGGGCAGGTTGGCGTATATGATTGGGATTTTTGTTACAGTACCATAGATCAGATCACACAATATGAGAGGTGGTGGTCTTGCAGATGCTTACTCCATGTACAAGCGTGCATCAACTAAAGACCAGTTCACTGATTATGAAGATAGAGAAGAAAATCTAGGTACCCCTTACACTGTTTTCTTCCGGATGGATCTAAGATTTAGAAGCATTGTCTACCAATGCAGTATATTCTAGTACAATTTTTTAAGATATTGTACGAGCAGAAAGGAACATGTTAATTTTGCTGCAAATTCATCTGGGGTTAAAGGGGTGTGCATGAGAATGGTTTTTTTTCTTTCTAATTTTAAATAATGCCTAGATCTATAATCTATTTCTCTATGTTGTTCCAAATTATGAAATCATCAAGTTTCAATTTTTATATCTTTTTGCCAAGAAATAAAAATTTGCCAACTTGGTTGAATGATGTCATCCATTTTCCAATTAATAGTATAATACTCTTCTAGTGTACCATTAGCTTAGAGACAACAATAGGACATAACATAAAAGGATATAATTTTGTGTAAATTGACTTTTGATTCTTCTTCCTTGTGTCTATTTAGATCGTGCCGAAAATGGTGTGTGGAAAGAAATTGGAAACCCCTCATGGAAGCGGCCGTTGCCACATATACTGGTGGCAATTATTTCATCACTCTTGTTTGGCTACCATCTTGGGTATGACTGAACTTTCAAATTTGGTTTCTTGCATAAAGCCTACCTTTTTAGTTGGTTAAACATTGACCTTGTTGACCATTTTCTATTTTTATTTTTAAAACTACTTTGGTTTGGTTTATTCAGGGTGGTTAATGACACTCTAGAAAGCATGTCTTTGGACCTTGACTTCAGTGGCAGCACCTTGGCGGAAGGTATTTTACGCCATTTACCTTAAAGATTCCCCTGCGCCCCAGCTCCTGCCACCTGAACTTCTGTGTGTCCGCCTCTCTAGGAGGATTCTTAATTTTTAGTTGGTGGGGGGAATCCACTACTCATTTGTGACAGAGCATGCTACATTTCAATAACTATAGATGTTATTTTTTATTTTATTTTGTTATATTAATATATACAGTGATCGAGTCCAAGGCAGTGATGTCAATCAAACCTATTGTCTAATACTTGCTTATTCAAAGAAGATTCTCTTCATCTAGTTGCTTAGTTCAATGCCTACAGGGTCCTTCTGATATGATAATTCTATTTTCAAAGGTCTAGTTGTGAGTACATGTTTGGGAGGTGCTCTTTTGGGCTCTATATTCAGTGGTTGGATAGCAGATGGGGTTGGTCGTCGGAGAGGCTTTCAACTGTGTGCTCTACCAATGATTATAGGTGCTTCTATGAGGTAAAACCTTAATAAACTTTTTACTAGCTATATTACGGCCTTTTCAACTTTGAATGCGACCATGAACATTTACTTTGTAATACCGTCTAAATATTGTGTAGTCTTGAATCCTCTTCTGTTCATTGTATAACCTGCCTTGGATGAATGGATGGTTTAAAAGAAAGTGTATAATCCCTTAGGGGATGCTTAGTCTTGCTATATTTTGCATTGGCAAACTCTCCTGCAGACTTATTCTTAAGAGTCTTGTAAAGGTCATTTATATAGCCAGGGGTGTTTGAGTTTTCTTTTCATGTTTAAGTTATTGAATTATATAACCTGGAGCGAATACGGAAATTTTTAATTCAAATCTATTTCTGTACGAGTTTCCGGAAATTAGCTGAAGGTTCTTCAACTTCATAAATGTAGTGCCGCAACCAGTACTCTTGGAGTTATGCTTCTTGGAAGGTTATTTGTTGGAATAGGGATGGGCCTTGGCCCTGCTGTTGCTGCTCTCTATGTTGCAGAGGTATATGATATTATCTTTTGCTCCTAATTCTATCTTTTTAGTTACATTTAATTTGTTTGACCAGGTTTCACCAGCTTTTGTTAGAGGCACTTATGGGAGTTTCACTCAGATCGCCACATGCCTTGGGCTCCTGGGATCTCTTCTCATTGGAATTCCTGCCAAGGATACTGCTGGTTGGTAAGGATTGTGTGACCTTAATCTTCCTTTTTATTATTAGTAAAATCAATTGATAAGCCTGGCTGATAGGAATGAAGAAAATGTACTATTCCATTTTATCCAGTCACTGTTTGGAATAAACTTTCTTCAGTTTGAGACTGCTAAACTGCTTTTTATGGGAGAATATTAAGAATAAGTCAATTATCCTACATGTTTATAGCATTCCGTTAATTAATTGAGTGATGTGAACTATAACTACTTCTAAAATGATGTCACAGGTGGCGAGTTTGCTTTTGGATATCCACCATTCCTGCTGCAATACTTGCTGTTTTGATGGAATTCTGTGCCGAGAGTCCTCACTGGCTTGTTAAGGTTGGTTATTAAGCTCATAAGTCATTGAGTGTCTTGCAGTGGATAGAGAAGTGGCATTTGTAAATTCAATTTTTTTGTGAATCTTGCAAATAGTAAAATCTGTTGACAATTCACTAGGTCATCAATTGGAAGAAGCTCTTCTTTATTTCAGTTGACAAGTGAATACCTGAAATGCATATGTGGGCAGTCTGTTTATAAACTACTGCTTGGCTCCTATCTTGAATATATGTTTACAAATCTGTTCTATGTACTCATACTCTAAATTTTAGTACAATCCATTGAATGTTGGGCATTTTAGTGTCTTTTTAACCACGTTCTCTTACAAGGCAACATAATGAAATAACTGAAGGCGATAGAATCTTTACTAATTCCAACAACATTATCCTGATTGCTATCTCTATACATTGATGGGCTTGTGAGCTTCCTGTGCACAATAACTTAGCAGGTTTTAAGTGCAACTCTACTATTGAGAGAAACATTATTGGTTCACTCCTGCCACATTTTGTCTTTGGTCCCTGATACTTGATGTAATACTAGATGTAAGAACAATTAATTGAACCACAATTAAACAAACAAGAAAAGATGCAAGGATATGATTGATAAATAAAAATGAAGGGAATAGACTTCAGAAGAAAAGAAGGGATAATCTAACAATTAAAATACATTAATCATCAGATTCAATCCAAGAGGAAGAGAAATGAACTCATACATGGAAATCCTTACTTAGAGTATTCAAGAAAGGTTCAGTGAAGAGATACCAAGGAAATCTCCTATAAACTCACACAAAGAGTATTTCTCTATCTTCAAAACTTAACTATCCCTAATATGAAGACTAAAAACTATTTATACTAGTCTTGCAAAAATGCCTAGATTAAAAGAATAACCAAATAATTAAAATAGCCACTTGAGCATGTTAGTTGCCTTGAAGTCTTCCTTGCATGCTTCCTTTTATCCTTTAAACTCATGATGGTTGAAAGAATGCTCAAAAGTCCTTGATGACCTATATGGTTGTCGTCATTTCCCTCATGAATATATTTGAGCATGTTACGAACTTTAAAAGCTCTTTTAATGAATCTTCCATGACACTTTGCTCCTCGTGGATGATTGAAAGATTCCAAATCCAAGATAGCCCACACCCTCGTTGTTGATATCAATCCTGCTACCTCAATTTGCATCAATACTAAAGTCAAGACTACACCGTATTTATACCATAATATAGTTAGCGTGTTGTACTTATCAAAATAAAAGCGGGTATATTATTATGGTGCTTCTATGCAGGATATTCTTGATTTACAAACACTCAGCAGCTCATGGTTCTCTAATATAACTCACATTTTATTTCTGGACTTCTCTCAGAGAGGAAGAATTGATTTAGCTGAAGAAGAGCTTGAAAAGCTTATGGGAGCACCACATGTTAAATATGCCATTGCAGAAATGTCAAAGACAGACAAAGGAGATGAGGTGGATAATGTTAGGTTTGGAGAGCTATTGTATGGTCGCCATTTTAAAGGTATAATTATTGATGATGTGTTCCCATTCTGTCAATATTTTTCTGTGTGAATAAGTTGATGAATTTATAACTTTTGCTGTTTGTACAGTGGTTTTCATTGGATCTGCCTTATTTGCTTTGCAACAACTATCTGGAATAAATGCTGTATTTTATTTCTCTTCAACTGTGTTTAAGAAGGCTGGAGTACCTACGGACACTGCAAATACATGTGTTGGGATTGTAAACTTAACAGGTAAACATATCCCCTCACCACACAAAACAGGTATAACACTCTTGAATCTGTTAGTCATTTCTCATTTCGCTGTTGCCTATAACATCTACAGGGTCTATTATTGCAATGATGTTGATGGATAGGCTTGGGAGGAAGGTGCTTCTAATTGGGAGTTTTTTGGGCATGGTAACCTAATCTTGTTTGCTCAATCCTTTGTGCTTACCATGGCCGGTCTTAGAATCGTGTCACTATATTTTGCTTTCTCATTCTTAAACTTCTGAGTTGTTTTTGGTGCAGGCAGTCGCAACAGGTCTTCAAGTAGCAGCTGCGAGTTCATTTGTACCAAGCTTTGCAGTATTATACCTATCAGTTGGCGGGACCCTACTGTGAGTAATCCACTTCAAGATTGTTGTTGTAGTAGTTGATGCATTAAATATATTGATAGAAAGGACTGGAAATGCTCGTTATGCTTTAATGATTAGATAACTATCAGAGGCTTATAATTCCTTCCTTCTGGGAAAGTTAATTCTTTGTCCAACAAAGAGAAGTCAGTAAAGCAGCTAAGAGATGAAGATAAGTAGTTTCGGTACTGCTTCTGTGGATAACAGTTTTCAATTGCATTCTAGTCATTATGTACTTGGTAACTGTTGACTCTGGTTAAATCAATGAAAGATGAGACAATTTTATGCTATAGGTAGCTTTCTTGACTATTAAGGAGATACTACAAATGCACAGATGCAATGGCCAGTTGTTTTCTTCAATAATGGGAAATTATTTATGTTAGGTATGTGTTAGCATTTTCTTTGGGTGCTGGTCCAGTCCCCAGCCTCCTGCTGTCAGAGATATTTCCTGGCCGGATTAGAGCAAAGGCAATGGCTTTATGCATGGCTGCACATTGGGTACTTTCATCCTGCCCTTGATATTTTATTTTATTTTTGCAAATTATTCTCTTTGCTTTGACCTTGGATGAAGAATAGAAGATCCTTTGGAACTTTGTGTCTGACAACTATGATCTATATGACACTACATATTGTTCTTATACGAACCATTCAAGTCTTAATAACTTTTCACATCAGATTCTTCTTTTAATCATTCTTTTGTTTCATCTTTTTTTTTTTTTTGTGGGTGGGTTGGGGTGGAGTGTGTGTGCTGTGGTCCAAACAGATCAAGATGGATGTCGAGGATTCATATGGCCAACTCTTAACTAGTTTGCAGGTTGATGCACAATACTAGTTGTTGAGGGAGGAGAGGAGATGTATTCCCTTATTATTTCCGGTAGTATCTCGGAATTTACACATTTAATCGAAACACATCTCCCATTGGGTACTATATGTTCTAGATTCCCAGTCATTTGAAACGAGTCGCTGCTGAAATGAAAGCATCAGCCACATCCTGCTATTAGGTGTAAGTCAAATAAGATGGGTAGATTCATCCATCACCGTGCGATATTGACTGTCGGATATATATTAAAAAAAAAGAACATTATCCATCACGAGGAAGAGAGCTGTTCTGTCTGCACAATGACACAGTCTACTTAAGTGTTAGTAATAATTAAATCTTGCCCCCTCCACCTCTAACCCCCCCCCCCCCCCCCCTTTTTTTTTTTAACTGCCAAGAACCAGAAAATGAACCATTTAATGTGATGGGGAAATCTAGGGGTATCCTAGTTCATCCCAAAATTTCTAATGCAGTATTCATTTTGTATTCTTAACTTCAAATAAGAATCTAATCTTTGCACATGACCAACCCTTTGACTCTCTGACCCAGTGTTGGATGATCAAAGAGTTTTGTGCTTAAAATAAAATTCTTCCCGGAAGACTTTTGAGTTTTGACATCATTTAAGAGAGATCTAAACCTAGCTGGTAAACTCTATATACTGTTCTAAATACAAATTGATATGAGATAATCTTTTACATCTCAAAATGAAAAAAAAAAATGAGATCAGGCATACTACTTATGTCCTTTCACATTCTGGTTTATGTGTGGTTCAGCTACAGCAGTAATTTAAAATTATTTAAGTGTTCTCAGCACTTTGCTTTTTATTTTAATTGTTGTTGTCATAGCTTTTGTTTTATCCGAAATCTCAAGAAAACATCATAGATTTTGTTAGACTGATGCTTTCATTTCATCTTTCTTTCCCAATGTATTCTTATCGTATATTTTGCTCTTTAACAGGTCATAAATTTTTTGGTCGGCCTTCTGTTTCTGCCGATGCTTGAGCATCTTGGACCACAAATAGTTTATGCGATCTTTGCAGGATTTTGCTTGTTTGCACTGGCCTTTGTGAAAAAGAATGTGGTGGAAACGAAAGGGAAAACATTACAGGAGATTGAGTTTGCCCTTCTTCCATCTCATTAGTTGGTGACTAGATCACACTCTATACTAAAGTTCAGATTGGAAAATGTTAAGGTCCTAGTGATTGAACATCCAAATTCTTTGCTATAGCTATTTCTTGATTTGTACAATTTCGGAGTGTGTTCATAGGCAGGAAAGGCAGCAACAATGAACAATCAAGATAAAGATTGTCACAAAGCGAGTTTTCATAGGGCAATTGTCACTCTGCTTATTTTTGCTGCTTTTTTGCTCACTCCACTGGTCGGTGACTATTGCCTGAGGGAGCATGAAACTGCATCTGCCTCGGCCAGTAGTAGATCACATATGTACTACAGAGTACCTATTGTTGTTATCTTTGTATACCTTTCTTTTAATTTTTACCTTGATCTGATTTTTGTAATTAGCATGACACGGAAAGGCTACTCTAAACATTCCTTACAGAAATAATGTTACAGATTTTGAATTAGCAAGATACTGGTAGCTGCTCTGCTGTAACAAGAAATATTGGTAGTATTGTAGTATACAATTGATTAATGTTAGCTGAGATTTTTCAATATTTGTCTTCAGT</genome_strand>
        <mrna_strand>TTTTCCTTTTTTAATTAATTTCTTTCTAAAACTTCACTACCAATATGCAATAGCTAGTGCCTCACAAAACGTTTCAGGAG...................................................................................................................................GTTGGCGTATATGATTGGGATTTTTGTTACAGTACCATAGATCAGATCACACAATATGAGAGGTGGTGGTCTTGCAGATGCTTACTCCATGTACAAGCGTGCATCAACTAAAGACCAGTTCACTGATTATGAAGATAGAGAAGAAAATCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTGCCGAAAATGGTGTGTGGAAAGAAATTGGAAACCCCTCATGGAAGCGGCCGTTGCCACATATACTGGTGGCAATTATTTCATCACTCTTGTTTGGCTACCATCTTGG...........................................................................................................................GGTGGTTAATGACACTCTAGAAAGCATGTCTTTGGACCTTGACTTCAGTGGCAGCACCTTGGCGGAAG..............................................................................................................................................................................................................................................................................................................................................GTCTAGTTGTGAGTACATGTTTGGGAGGTGCTCTTTTGGGCTCTATATTCAGTGGTTGGATAGCAGATGGGGTTGGTCGTCGGAGAGGCTTTCAACTGTGTGCTCTACCAATGATTATAGGTGCTTCTATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCAACCAGTACTCTTGGAGTTATGCTTCTTGGAAGGTTATTTGTTGGAATAGGGATGGGCCTTGGCCCTGCTGTTGCTGCTCTCTATGTTGCAGAG................................................................GTTTCACCAGCTTTTGTTGGAGGCACTTATGGGAGTTTCACTCAGATCGCCACATGCCTTGGGCTCCTGGGATCTCTTCTCATTGGAATTCCTGCCAAGGATACTGCTGGTTG.................................................................................................................................................................................................................................................................GTGGCGAGTTTGCTTTTGGATATCCACCATTCCTGCTGCAATACTTGCTGTTTTGATGGAATTCTGTGCCGAGAGTCCTCACTGGCTTGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAAGAATTGATTTAGCTGAAGAAGAGCTTGAAAAGCTTATGGGAGCACCACATGTTAAATATGCCATTGCAGAAATGTCAAAGACAGACAAAGGAGATGAGGTGGATAATGTTAGGTTTGGAGAGCTATTGTATGGTCGCCATTTTAAAG........................................................................................TGGTTTTCATTGGATCTGCCTTATTTGCTTTGCAACAACTATCTGGAATAAATGCTGTATTTTATTTCTCTTCAACTGTGTTTAAGAAGGCTGGAGTACCTACGGACACTGCAAATACATGTGTTGGGATTGTAAACTTAACAG...........................................................................................GGTCTATTATTGCAATGATGTTGATGGATAGGCTTGGGAGGAAGGTGCTTCTAATTGGGAGTTTTTTGGGCATG...............................................................................................................GCAGTCGCAACAGGTCTTCAAGTAGCAGCTGCGAGTTCATTTGTACCAAGCTTTGCAGTATTATACCTATCAGTTGGCGGGACCCTACT..............................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGTTAGCATTTTCTTTGGGTGCTGGTCCAGTCCCCAGCCTCCTGCTGTCAGAGATATTTCCTGGCCGGATTAGAGCAAAGGCAATGGCTTTATGCATGGCTGCACATTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATAAATTTTCTGGTCGGCCTTCTGTTTCTGCCGATGCTTGAGCATCTTGGACCACAAATAGTTTATGCGATCTTTGCAGGATTTTGCTTGTTTGCACTGGCCTTTGTGAAAAAGAATGTGGTGGAAACGAAAGGGAAAACATTACAGGAGATTGAGTTTGCCCTTCTTCCATCTCATTAGTTGGTGACTAGATCACACTCTATACTAAAGTTCAGATTGGAAAATGTTAAGGTCCTAGTGATTGAACATCCAAATTCTTTGCTATAGCTATTTCTTGATTTGTACAATTTCGGAGTGTGTTCATAGGCAGGAAAGGCAGCAACAATGAACAATCAAGATAAAGATTGTCACAAAGCGAGTTTTCATAGGGCAATTGTCACTCTGCTTATTTTTGCTGCTTTTTTGCTCACTCCACTGGTCGGTGACTATTGCCTGAGGGAGCATGAAACTGCATCTGCCTCGGCCAGTAGTAGATCACATATGTACTACAGAGTACCTATTGTTGTTATCTTTGTATACCTTTCTTTTAATTTTTACCTTGATCTGATTTTTGTAATTAGCATGACACGGAAAGGCTACTCTAAACATTCCTTACAGAAATAATGTTACAGATTTTGAATTAGCAAGATACTGGTAGCTGCTCTGCTGTAACAAGAAATATTGGTAGTATTGTAGTATACAATTGATTAATGTTAGCTGAGATTTTTCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E425129" ref_strand="+" ref_description="SGN-E425129 [STM-44-J5]">
      <seq>acaaacttttttttgaaaaatctcagctattctactcaattgtgtactacaatactaccaatatttcttgttacagcaaagcagctaccagtatctttctaattcaaaatctgtaacattatttctgtaaggaatgctcagagtagcctttctgtgccatgctagttacaaaaatcagatcaaggtaaaaattaaaagaaagggtatacaaaaataacaacaataggtactctgtagtatatacgtgatctactactggccgaggaagatgcagtttcatgctccctcagacaatagtcaccgaccagtggagtgagcataaaagcagcaaaaataagcagagtgacaattgccctatgaaaacttgctttgtgacgatatttatcttgattgttcgtcgttgctgcctttcctgcctatgaacacactccaaaattgtacaaatcaagaaatagctatagcaaagaatttggatgttcaatcactaagaccttaacattttccaatctgaacttaatatagagtgtgatctagtcaccaactaatgagacggaagaagggcaaactccatctcccggaatggttttccttttggttccaccacattctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38817" stop="40005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39105" g_stop="39705" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="612" r_length="600" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E425129" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39105" e_stop="39705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAAATCTCAGCTAACATTAATCAATTGTATACTACAATACTACCAATATTTCTTGTTACAGCAGAGCAGCTACCAGTATCTTGCTAATTCAAAATCTGTAACATTATTTCTGTAAGGAATGTTTAGAGTAGCCTTTCCGTGTCATGCTAATTACAAAAATCAGATCAAGGTAAAAATTAAAAGAAA-GGTATACAAAGATAACAACAATAGGTACTCTGTAGTACATATGTGATCTACTACTGGCCGAGGCAGATGCAGTTTCATGCTCCCTCAGGCAATAGTCACCGACCAGTGGAGTGAGCAAAAAAGCAGCAAAAATAAGCAGAGTGACAATTGCCCTATGAAAACTCGCTTTGTGACAATCTTTATCTTGATTGTTCATTGTTGCTGCCTTTCCTGCCTATGAACACACTCCGAAATTGTACAAATCAAGAAATAGCTATAGCAAAGAATTTGGATGTTCAATCACTAGGACCTTAACATTTTCCAATCTGAACTTTAGTATAGAGTGTGATCTAGTCACCAACTAATGAGATGGAAGAAGGGCAAACTCAATCTCCTGTAATGTTTTCCCTTTCGTTTCCACCACATTCTTTT</genome_strand>
        <mrna_strand>TTGAAAAATCTCAGCTATTCT-ACTCAATTGTGTACTACAATACTACCAATATTTCTTGTTACAGCAAAGCAGCTACCAGTATCTTTCTAATTCAAAATCTGTAACATTATTTCTGTAAGGAATGCTCAGAGTAGCCTTTCTGTGCCATGCTAGTTACAAAAATCAGATCAAGGTAAAAATTAAAAGAAAGGGTATACAAAAATAACAACAATAGGTACTCTGTAGTATATACGTGATCTACTACTGGCCGAGGAAGATGCAGTTTCATGCTCCCTCAGACAATAGTCACCGACCAGTGGAGTGAGCATAAAAGCAGCAAAAATAAGCAGAGTGACAATTGCCCTATGAAAACTTGCTTTGTGACGATATTTATCTTGATTGTTCGTCGTTGCTGCCTTTCCTGCCTATGAACACACTCCAAAATTGTACAAATCAAGAAATAGCTATAGCAAAGAATTTGGATGTTCAATCACTAAGACCTTAACATTTTCCAATCTGAAC-TTAATATAGAGTGTGATCTAGTCACCAACTAATGAGACGGAAGAAGGGCAAACTCCATCTCCCGGAATGGTTTTCCTTTTGGTTCCACCACATTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E707810" ref_strand="+" ref_description="SGN-E707810 [FA34AB08]">
      <seq>gtctgtaaagcagctaagagatgaagataagtagtttcggtactgcttctgtggataacagttttcaattgcattctagtcattatgtacttggtaactgttgactctggttaaatcaatgaaagatgagacaattttatgctataggtagctttcttgactattaaggagatactacaaatgcacagatgcaatggccagttgttttcttcaataatgggaaattatttatgttaggtatgtgttagcattttctttgggtgctggtccagtccccagcctcctgctgtcagagatatttcctggccggattagagcaaaggcaatggctttatgcatggctgcacattgggtcataaattttttggtcggccttctgtttctgccgatgcttgagcatcttggaccacaaatagtttatgcgatctttgcaggattttgcttgtttgcactggcttttgtgaaaaagaatgtggtggaaacgaaagggaaaacattacaggagattgagtttgcccttcttccatctcattagttggtgactagatcacactctatactaaagttcagattggaaaatgttaaggtcctagtgattgaacatccaaattctttgctatagctatttcttgatttgtacaatttcggagtgtgttcataggcaggaaaggcagcaacaatgaacaatcaagataaagattgtcacaaagcgagttttcatagggcaattgtcactctgcttatttttgctgcttttttgctcactccactggtcggtgactattgcctgagggagcatgaaactgcatctgcctcggccagtagtagatcacatatgtactacagagtacctattgttgttatctttgtataccttttctttattttttacctgatctgatttttgtaatagcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="41745" stop="38950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41445" g_stop="41094" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41093" i_stop="39818" i_length="1276">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39817" g_stop="39250" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="918" r_length="566" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E707810" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41445" e_stop="41094"/>
          <exon e_start="39817" e_stop="39250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTAAAGCAGCTAAGAGATGAAGATAAGTAGTTTCGGTACTGCTTCTGTGGATAACAGTTTTCAATTGCATTCTAGTCATTATGTACTTGGTAACTGTTGACTCTGGTTAAATCAATGAAAGATGAGACAATTTTATGCTATAGGTAGCTTTCTTGACTATTAAGGAGATACTACAAATGCACAGATGCAATGGCCAGTTGTTTTCTTCAATAATGGGAAATTATTTATGTTAGGTATGTGTTAGCATTTTCTTTGGGTGCTGGTCCAGTCCCCAGCCTCCTGCTGTCAGAGATATTTCCTGGCCGGATTAGAGCAAAGGCAATGGCTTTATGCATGGCTGCACATTGGGTACTTTCATCCTGCCCTTGATATTTTATTTTATTTTTGCAAATTATTCTCTTTGCTTTGACCTTGGATGAAGAATAGAAGATCCTTTGGAACTTTGTGTCTGACAACTATGATCTATATGACACTACATATTGTTCTTATACGAACCATTCAAGTCTTAATAACTTTTCACATCAGATTCTTCTTTTAATCATTCTTTTGTTTCATCTTTTTTTTTTTTTTGTGGGTGGGTTGGGGTGGAGTGTGTGTGCTGTGGTCCAAACAGATCAAGATGGATGTCGAGGATTCATATGGCCAACTCTTAACTAGTTTGCAGGTTGATGCACAATACTAGTTGTTGAGGGAGGAGAGGAGATGTATTCCCTTATTATTTCCGGTAGTATCTCGGAATTTACACATTTAATCGAAACACATCTCCCATTGGGTACTATATGTTCTAGATTCCCAGTCATTTGAAACGAGTCGCTGCTGAAATGAAAGCATCAGCCACATCCTGCTATTAGGTGTAAGTCAAATAAGATGGGTAGATTCATCCATCACCGTGCGATATTGACTGTCGGATATATATTAAAAAAAAAGAACATTATCCATCACGAGGAAGAGAGCTGTTCTGTCTGCACAATGACACAGTCTACTTAAGTGTTAGTAATAATTAAATCTTGCCCCCTCCACCTCTAACCCCCCCCCCCCCCCCCCTTTTTTTTTTTAACTGCCAAGAACCAGAAAATGAACCATTTAATGTGATGGGGAAATCTAGGGGTATCCTAGTTCATCCCAAAATTTCTAATGCAGTATTCATTTTGTATTCTTAACTTCAAATAAGAATCTAATCTTTGCACATGACCAACCCTTTGACTCTCTGACCCAGTGTTGGATGATCAAAGAGTTTTGTGCTTAAAATAAAATTCTTCCCGGAAGACTTTTGAGTTTTGACATCATTTAAGAGAGATCTAAACCTAGCTGGTAAACTCTATATACTGTTCTAAATACAAATTGATATGAGATAATCTTTTACATCTCAAAATGAAAAAAAAAAATGAGATCAGGCATACTACTTATGTCCTTTCACATTCTGGTTTATGTGTGGTTCAGCTACAGCAGTAATTTAAAATTATTTAAGTGTTCTCAGCACTTTGCTTTTTATTTTAATTGTTGTTGTCATAGCTTTTGTTTTATCCGAAATCTCAAGAAAACATCATAGATTTTGTTAGACTGATGCTTTCATTTCATCTTTCTTTCCCAATGTATTCTTATCGTATATTTTGCTCTTTAACAGGTCATAAATTTTTTGGTCGGCCTTCTGTTTCTGCCGATGCTTGAGCATCTTGGACCACAAATAGTTTATGCGATCTTTGCAGGATTTTGCTTGTTTGCACTGGCCTTTGTGAAAAAGAATGTGGTGGAAACGAAAGGGAAAACATTACAGGAGATTGAGTTTGCCCTTCTTCCATCTCATTAGTTGGTGACTAGATCACACTCTATACTAAAGTTCAGATTGGAAAATGTTAAGGTCCTAGTGATTGAACATCCAAATTCTTTGCTATAGCTATTTCTTGATTTGTACAATTTCGGAGTGTGTTCATAGGCAGGAAAGGCAGCAACAATGAACAATCAAGATAAAGATTGTCACAAAGCGAGTTTTCATAGGGCAATTGTCACTCTGCTTATTTTTGCTGCTTTTTTGCTCACTCCACTGGTCGGTGACTATTGCCTGAGGGAGCATGAAACTGCATCTGCCTCGGCCAGTAGTAGATCACATATGTACTACAGAGTACCTATTGTTGTTATCTTTGTATACCTTTCTTTTAATTTTTACCTTGATCTGATTTTTGTAATTAGCATGA</genome_strand>
        <mrna_strand>GTCTGTAAAGCAGCTAAGAGATGAAGATAAGTAGTTTCGGTACTGCTTCTGTGGATAACAGTTTTCAATTGCATTCTAGTCATTATGTACTTGGTAACTGTTGACTCTGGTTAAATCAATGAAAGATGAGACAATTTTATGCTATAGGTAGCTTTCTTGACTATTAAGGAGATACTACAAATGCACAGATGCAATGGCCAGTTGTTTTCTTCAATAATGGGAAATTATTTATGTTAGGTATGTGTTAGCATTTTCTTTGGGTGCTGGTCCAGTCCCCAGCCTCCTGCTGTCAGAGATATTTCCTGGCCGGATTAGAGCAAAGGCAATGGCTTTATGCATGGCTGCACATTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATAAATTTTTTGGTCGGCCTTCTGTTTCTGCCGATGCTTGAGCATCTTGGACCACAAATAGTTTATGCGATCTTTGCAGGATTTTGCTTGTTTGCACTGGCTTTTGTGAAAAAGAATGTGGTGGAAACGAAAGGGAAAACATTACAGGAGATTGAGTTTGCCCTTCTTCCATCTCATTAGTTGGTGACTAGATCACACTCTATACTAAAGTTCAGATTGGAAAATGTTAAGGTCCTAGTGATTGAACATCCAAATTCTTTGCTATAGCTATTTCTTGATTTGTACAATTTCGGAGTGTGTTCATAGGCAGGAAAGGCAGCAACAATGAACAATCAAGATAAAGATTGTCACAAAGCGAGTTTTCATAGGGCAATTGTCACTCTGCTTATTTTTGCTGCTTTTTTGCTCACTCCACTGGTCGGTGACTATTGCCTGAGGGAGCATGAAACTGCATCTGCCTCGGCCAGTAGTAGATCACATATGTACTACAGAGTACCTATTGTTGTTATCTTTGTATACCTTTTCTTTATTTTTTACC-TGATCTGATTTTTGTAA-TAGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E245688" ref_strand="+" ref_description="SGN-E245688 [cLEF-48-K15]">
      <seq>tagaggcacttatgggagtttcactcagatcgccacatgccttgggctcctgggatctcttctcattggaattcctgccaaggatactgctggttggtggcgagtttgcttttggatatccaccattcctgctgcaatacttgctgttttgatggaattctgtgccgagagtcctcactggcttgttaagagaggaagaattgatttagctgaagaagagcttgaaaagcttatgggagcaccacatgttaaatatgccattgcagaaatgtcaaagacagacaaaggagatgaggtggataatgttaggtttggagagctattgtatggtcgccattttaaaggtataattattgatgatgtgttcccattctgtcaatatttttctgtgtgaataagttgatgaatttataacttttgctgtttgtacagtggttttcattggatctgccttatttgctttgcaacaactatctggaataaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="44460" stop="41760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44160" g_stop="44065" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44064" i_stop="43808" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43807" g_stop="43714" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="190" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43713" i_stop="42358" i_length="1356">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42357" g_stop="42060" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="488" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E245688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44160" e_stop="44065"/>
          <exon e_start="43807" e_stop="43714"/>
          <exon e_start="42357" e_stop="42060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGGCACTTATGGGAGTTTCACTCAGATCGCCACATGCCTTGGGCTCCTGGGATCTCTTCTCATTGGAATTCCTGCCAAGGATACTGCTGGTTGGTAAGGATTGTGTGACCTTAATCTTCCTTTTTATTATTAGTAAAATCAATTGATAAGCCTGGCTGATAGGAATGAAGAAAATGTACTATTCCATTTTATCCAGTCACTGTTTGGAATAAACTTTCTTCAGTTTGAGACTGCTAAACTGCTTTTTATGGGAGAATATTAAGAATAAGTCAATTATCCTACATGTTTATAGCATTCCGTTAATTAATTGAGTGATGTGAACTATAACTACTTCTAAAATGATGTCACAGGTGGCGAGTTTGCTTTTGGATATCCACCATTCCTGCTGCAATACTTGCTGTTTTGATGGAATTCTGTGCCGAGAGTCCTCACTGGCTTGTTAAGGTTGGTTATTAAGCTCATAAGTCATTGAGTGTCTTGCAGTGGATAGAGAAGTGGCATTTGTAAATTCAATTTTTTTGTGAATCTTGCAAATAGTAAAATCTGTTGACAATTCACTAGGTCATCAATTGGAAGAAGCTCTTCTTTATTTCAGTTGACAAGTGAATACCTGAAATGCATATGTGGGCAGTCTGTTTATAAACTACTGCTTGGCTCCTATCTTGAATATATGTTTACAAATCTGTTCTATGTACTCATACTCTAAATTTTAGTACAATCCATTGAATGTTGGGCATTTTAGTGTCTTTTTAACCACGTTCTCTTACAAGGCAACATAATGAAATAACTGAAGGCGATAGAATCTTTACTAATTCCAACAACATTATCCTGATTGCTATCTCTATACATTGATGGGCTTGTGAGCTTCCTGTGCACAATAACTTAGCAGGTTTTAAGTGCAACTCTACTATTGAGAGAAACATTATTGGTTCACTCCTGCCACATTTTGTCTTTGGTCCCTGATACTTGATGTAATACTAGATGTAAGAACAATTAATTGAACCACAATTAAACAAACAAGAAAAGATGCAAGGATATGATTGATAAATAAAAATGAAGGGAATAGACTTCAGAAGAAAAGAAGGGATAATCTAACAATTAAAATACATTAATCATCAGATTCAATCCAAGAGGAAGAGAAATGAACTCATACATGGAAATCCTTACTTAGAGTATTCAAGAAAGGTTCAGTGAAGAGATACCAAGGAAATCTCCTATAAACTCACACAAAGAGTATTTCTCTATCTTCAAAACTTAACTATCCCTAATATGAAGACTAAAAACTATTTATACTAGTCTTGCAAAAATGCCTAGATTAAAAGAATAACCAAATAATTAAAATAGCCACTTGAGCATGTTAGTTGCCTTGAAGTCTTCCTTGCATGCTTCCTTTTATCCTTTAAACTCATGATGGTTGAAAGAATGCTCAAAAGTCCTTGATGACCTATATGGTTGTCGTCATTTCCCTCATGAATATATTTGAGCATGTTACGAACTTTAAAAGCTCTTTTAATGAATCTTCCATGACACTTTGCTCCTCGTGGATGATTGAAAGATTCCAAATCCAAGATAGCCCACACCCTCGTTGTTGATATCAATCCTGCTACCTCAATTTGCATCAATACTAAAGTCAAGACTACACCGTATTTATACCATAATATAGTTAGCGTGTTGTACTTATCAAAATAAAAGCGGGTATATTATTATGGTGCTTCTATGCAGGATATTCTTGATTTACAAACACTCAGCAGCTCATGGTTCTCTAATATAACTCACATTTTATTTCTGGACTTCTCTCAGAGAGGAAGAATTGATTTAGCTGAAGAAGAGCTTGAAAAGCTTATGGGAGCACCACATGTTAAATATGCCATTGCAGAAATGTCAAAGACAGACAAAGGAGATGAGGTGGATAATGTTAGGTTTGGAGAGCTATTGTATGGTCGCCATTTTAAAGGTATAATTATTGATGATGTGTTCCCATTCTGTCAATATTTTTCTGTGTGAATAAGTTGATGAATTTATAACTTTTGCTGTTTGTACAGTGGTTTTCATTGGATCTGCCTTATTTGCTTTGCAACAACTATCTGGAATAAATGCT</genome_strand>
        <mrna_strand>TAGAGGCACTTATGGGAGTTTCACTCAGATCGCCACATGCCTTGGGCTCCTGGGATCTCTTCTCATTGGAATTCCTGCCAAGGATACTGCTGGTTG.................................................................................................................................................................................................................................................................GTGGCGAGTTTGCTTTTGGATATCCACCATTCCTGCTGCAATACTTGCTGTTTTGATGGAATTCTGTGCCGAGAGTCCTCACTGGCTTGTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAAGAATTGATTTAGCTGAAGAAGAGCTTGAAAAGCTTATGGGAGCACCACATGTTAAATATGCCATTGCAGAAATGTCAAAGACAGACAAAGGAGATGAGGTGGATAATGTTAGGTTTGGAGAGCTATTGTATGGTCGCCATTTTAAAGGTATAATTATTGATGATGTGTTCCCATTCTGTCAATATTTTTCTGTGTGAATAAGTTGATGAATTTATAACTTTTGCTGTTTGTACAGTGGTTTTCATTGGATCTGCCTTATTTGCTTTGCAACAACTATCTGGAATAAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E418503" ref_strand="+" ref_description="SGN-E418503 [STM-27-P1]">
      <seq>ttttctaagatttctctccgtcccttttgcattaacacgttttccttttcactttttcttaattaattccttctaaaacttcactaccaatatgcaatagctagccactccattttctgcctcacaaaacgttttttttcaggagatctgggatttgggcacgtgggcgtatatgattgggatttttcttacattaccatagatcagatcacacaatatgagaggtggtggtcttgcagatgcttactccatgtacaagcgtgcatcaactaaagaccagttcactgattatgaagatagagaagaaaatctagatcgtgctgaaaatggtgtgtggaaagaaattggaaacccctcatggaagcggccattgccacatatactggtggcaattatttcatcactcttgtttggctaccatcttggggtggttaatgacactctagaaagcatgtctttggaccttgacttcagtggcagcactttggctgaaggtctagttgggagtacatgtttgggaggtgctcttttgggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="46656" stop="44537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46312" g_stop="46239" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="0.784"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46238" i_stop="46149" i_length="90">
            <donor d_prob="0.974" d_score="0.74"/>
            <acceptor a_prob="0.844" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46148" g_stop="45956" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="314" r_length="192" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45955" i_stop="45517" i_length="439">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45516" g_stop="45405" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="426" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45404" i_stop="45282" i_length="123">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45281" g_stop="45214" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="494" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45213" i_stop="44880" i_length="334">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.179" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44879" g_stop="44837" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="537" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E418503" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46312" e_stop="46239"/>
          <exon e_start="46148" e_stop="45956"/>
          <exon e_start="45516" e_stop="45405"/>
          <exon e_start="45281" e_stop="45214"/>
          <exon e_start="44879" e_stop="44837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAATTAATTTCTTTCTAAAACTTCACTACCAATATGCAATAGCTAGTGCCTCACAAAACGTTTCAGGAGGTAATTAACAAGTGTATTATATGTTAATGGCACATAATTAAAGAATGAAATGCAAAAGATTAGATTTTTTATTTATTTTTTTGATTGAAGTATGGAATTTTGCCTTGATATCAGATCTGGCATTTGGGCAGGTTGGCGTATATGATTGGGATTTTTGTTACAGTACCATAGATCAGATCACACAATATGAGAGGTGGTGGTCTTGCAGATGCTTACTCCATGTACAAGCGTGCATCAACTAAAGACCAGTTCACTGATTATGAAGATAGAGAAGAAAATCTAGGTACCCCTTACACTGTTTTCTTCCGGATGGATCTAAGATTTAGAAGCATTGTCTACCAATGCAGTATATTCTAGTACAATTTTTTAAGATATTGTACGAGCAGAAAGGAACATGTTAATTTTGCTGCAAATTCATCTGGGGTTAAAGGGGTGTGCATGAGAATGGTTTTTTTTCTTTCTAATTTTAAATAATGCCTAGATCTATAATCTATTTCTCTATGTTGTTCCAAATTATGAAATCATCAAGTTTCAATTTTTATATCTTTTTGCCAAGAAATAAAAATTTGCCAACTTGGTTGAATGATGTCATCCATTTTCCAATTAATAGTATAATACTCTTCTAGTGTACCATTAGCTTAGAGACAACAATAGGACATAACATAAAAGGATATAATTTTGTGTAAATTGACTTTTGATTCTTCTTCCTTGTGTCTATTTAGATCGTGCCGAAAATGGTGTGTGGAAAGAAATTGGAAACCCCTCATGGAAGCGGCCGTTGCCACATATACTGGTGGCAATTATTTCATCACTCTTGTTTGGCTACCATCTTGGGTATGACTGAACTTTCAAATTTGGTTTCTTGCATAAAGCCTACCTTTTTAGTTGGTTAAACATTGACCTTGTTGACCATTTTCTATTTTTATTTTTAAAACTACTTTGGTTTGGTTTATTCAGGGTGGTTAATGACACTCTAGAAAGCATGTCTTTGGACCTTGACTTCAGTGGCAGCACCTTGGCGGAAGGTATTTTACGCCATTTACCTTAAAGATTCCCCTGCGCCCCAGCTCCTGCCACCTGAACTTCTGTGTGTCCGCCTCTCTAGGAGGATTCTTAATTTTTAGTTGGTGGGGGGAATCCACTACTCATTTGTGACAGAGCATGCTACATTTCAATAACTATAGATGTTATTTTTTATTTTATTTTGTTATATTAATATATACAGTGATCGAGTCCAAGGCAGTGATGTCAATCAAACCTATTGTCTAATACTTGCTTATTCAAAGAAGATTCTCTTCATCTAGTTGCTTAGTTCAATGCCTACAGGGTCCTTCTGATATGATAATTCTATTTTCAAAGGTCTAGTTGTGAGTACATGTTTGGGAGGTGCTCTTTTGGGCTC</genome_strand>
        <mrna_strand>TTTCTTAATTAATT-CCTTCTAAAACTTCACTACCAATATGCAATAGCTA--G-C-CACTCCA-TTTTCTGCCT..........................................................................................CACAAAACGTT-TTTTTTCAGGAGATCTGGGATTTGGGCACGTGGGCGTATATGATTGGGATTTTTCTTACATTACCATAGATCAGATCACACAATATGAGAGGTGGTGGTCTTGCAGATGCTTACTCCATGTACAAGCGTGCATCAACTAAAGACCAGTTCACTGATTATGAAGATAGAGAAGAAAATCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTGCTGAAAATGGTGTGTGGAAAGAAATTGGAAACCCCTCATGGAAGCGGCCATTGCCACATATACTGGTGGCAATTATTTCATCACTCTTGTTTGGCTACCATCTTGG...........................................................................................................................GGTGGTTAATGACACTCTAGAAAGCATGTCTTTGGACCTTGACTTCAGTGGCAGCACTTTGGCTGAAG..............................................................................................................................................................................................................................................................................................................................................GTCTAGTTGGGAGTACATGTTTGGGAGGTGCTCTTTTGGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E298340" ref_strand="-" ref_description="SGN-E298340 [cLET-41-M16]">
      <seq>atccgtgactcccttgctgaggagttggttaaaatgactgcagagtgtgaaaagctacgttcagaagcttccatgctgcctggcatccgagcagagctagatgcacttaggaggagacactcggcagctcttgaattgatgggtgaacgtgatgaggagttggaagaacttcgtgctgatattattgatatgaaggaaatgtacagagaacaagtaaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggagggagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaatcgttgtatagcatattcttttaccagtgacgtattattggctttaaaaaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="49690" stop="11128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49390" g_stop="49346" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49345" i_stop="49224" i_length="122">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49223" g_stop="49110" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="159" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49109" i_stop="47546" i_length="1564">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47545" g_stop="47471" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="234" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47470" i_stop="47387" i_length="84">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47386" g_stop="47123" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="498" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47122" i_stop="46510" i_length="613">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46509" g_stop="46481" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="527" r_length="29" r_score="0.655"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E298340" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298340" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49390" e_stop="49346"/>
          <exon e_start="49223" e_stop="49110"/>
          <exon e_start="47545" e_stop="47471"/>
          <exon e_start="47386" e_stop="47123"/>
          <exon e_start="46509" e_stop="46481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAGGTGAACTCTTTTTTTCCAGATACTAACTTCTTTTTCTTTTTCCCTTAGAGCCTTCCCTTTGCGATGTCCCTTTTTTGGATAAGGAAATCATTATTAATAGAATGTCTTTATTATTTGTTTAGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAGGTACAAACTGAGTTTTTTTATACGATCCATTATTTTTCTCTACCACAGCTATGTTTCTTGATGATCTTAGTTTTGGGTTTAAAAGGGAACTTATCTTTGCTTCTATATTACTCATCAAAAAGCAACATCTTTATTTGGGAAATCATTATATCAGGAAGTGGGAACGTCGGAATTTTTTGAATTATCACTCAAAGTGTAAATCACGTGTATGAACTGTATCAATCACCTCAACATATTCTTCAAAAAAAAAAAATCACCTCAACATAGTAAATTGTACATTTTTGGCAGAGTAATTTGTGCACATGCACCTTTCTACATTTTTGAAAGGATTAGTTCCCTTGTGTTTTATGAAAGGTCTGGTTCCATTTTTAATTGCATCTCCTTTTATTTTGGATGATTTGTGCTAATTGCCATCTAAAATATGACTTATGGTGAAAAGAAAGAGTTATACTTCTCTTACCTTTGCCTCTAAAGTTTTTTGGACTGGAGGTCTCGTTTTGCTCCGATTCCCAGATGTACTGAATAGATTAAGACTCAGTTGATGTAGGATGTTGTCGTCCTTTTTCTGTATCTTACTCGGTTCTGTTCTTTTTGTTGCATACACGAGTAATTCCCTTTATAATAAAGGTGTTCTTTTAGATTTATATTAATTATACCTTATAGAAAAAGATGATTATTAATATCAATTCTGCAAGTTATTTCGGTTTTTCAAGTACATGTTAGTGTGCACACACTTAGGCATCAAACAATCTCCTGATTTCCTTTATGGGCATTGTAGCGATGAGTGAATTTACCTGTTTTCTTCATGTCTGGAGATCATTCGTATTTCATTCTAGTTAAATGTCTGTTATTTCAGTTTCATCATTCTTTGTGAAATTATTGTAACTTCTGAACCACATTGTAAAGAATAGACATCTTCCTTTTTTACTTAATTTTTTTTATAAAATACCTTTTGCACCACCAAACTCCCCGAAATGTTCAAGTGCCCCCTTCTCCATGATCCACTCGTGGCATCTGCTACCATAAATGCTATTTTTACTCCATAATTGTTGAAAATGTACCTCATACACTCCCCAGGTGTTATATACTCTAGAAGTTCCTTTTTCTACTCCCCTAGTAGACACGTTTGTATCTCTTCCTTTTCGCTCTTCCTCTATATCTTGATTTGTGTTCCTTCCTCCTTTAGGTAAGCTCAGCCCTCCATTGACAAACCAACACACTTTAGATATTGATGAATTCTTTAAACAATGGAAGTATGACACAGATTATGGGCTTGCTGATGTCGACTTGATCATCCTAAGTTAGGTTAATTGAATCATAATTTCTAGCGGTTCAATGTTATTCCATCGTACTTGAATTTGACACAAAACTTTGCAATAGTTGTGTGGCTTTACTGCCACGTGCAGTTGTTCAATGGGGATGCAACTGGTCAAGTGTCAGCTTTTTTTATTTATTTATAGATCAACTTTCCATTTGAAATCCAATCTATGTCCATAGTGAAGTATTGATCTTTCCCCATAGTGCTCTTTGAATTTCTTATTCACTGGACGTGTATTTGTGATAGTTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGTTGGCTGTGCCTTGCTGGTTGCAGCTGACATGTTTTGCTTATGTGCTAGGAATTTACACACCCTGACTAATAATATCCAGATTAATTTTGAATCATATTACGTATATGTTTTATTCAAATTTTACAGAGATCTTTTGCTATGAATTCAAAGAAGAGAAAATCAAAGGATACAAGAAATTCCACTGTTTCACGCCCAGAACAATAAGGCGATACATCATTGATAATTTCTTAAATTTGTCAATAAATTTTATTTGAACACTTAAATAATATATTCTTATTCAATCACAAACTTCAGTCCAAATTTGAAAACACTCGTGTGTGTTTCGAGAGTTCATATCAACCTTTTTAATTATATCCATTCACTGAAACAAACTTGAGTTTTCGCGGCTTATTGAAATCAATGTTTTAAGTATGTAACTTATTCATGCAATGAATTTTTAAAAGTACACGTTAATCAAAAAATGTTTCGATGGTCAAGAACATAGGTGTACAAATTTACGCTGATTTGAAAATTATGTGACACAAAGTAGAAGAGAGGAGGGATGACGCGTCACGTCATCATAGGATGAGAGCCGAAGAAAAGGAAAAAGCAACAAGATTGGAGC</genome_strand>
        <mrna_strand>ATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG..........................................................................................................................TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTACCAGTGACGTATTATTGGCTTTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAACTCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E273226" ref_strand="-" ref_description="SGN-E273226 [cLEM-24-G19]">
      <seq>aaaatgactgcagagtgtgaaaagctacgttcagaagcttccatgctgcctggcatccgagcagagctagatgcacttaggaggagacactcggcagctcttgaattgatgggtgaacgtgatgaggagttggaagaacttcgtgctgatattattgatatgaaggaaatgtacagagaacaagtaaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggagggagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaatcgttgtatagcatattcttttaacagtgacgtattattggctttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="49525" stop="11136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49360" g_stop="49346" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49345" i_stop="49224" i_length="122">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49223" g_stop="49110" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="129" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49109" i_stop="47546" i_length="1564">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47545" g_stop="47471" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="204" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47470" i_stop="47387" i_length="84">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47386" g_stop="47123" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="468" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47122" i_stop="46508" i_length="615">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46507" g_stop="46490" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="486" r_length="18" r_score="0.722"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E273226" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273226" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49360" e_stop="49346"/>
          <exon e_start="49223" e_stop="49110"/>
          <exon e_start="47545" e_stop="47471"/>
          <exon e_start="47386" e_stop="47123"/>
          <exon e_start="46507" e_stop="46490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGACTGCAGAGGTGAACTCTTTTTTTCCAGATACTAACTTCTTTTTCTTTTTCCCTTAGAGCCTTCCCTTTGCGATGTCCCTTTTTTGGATAAGGAAATCATTATTAATAGAATGTCTTTATTATTTGTTTAGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAGGTACAAACTGAGTTTTTTTATACGATCCATTATTTTTCTCTACCACAGCTATGTTTCTTGATGATCTTAGTTTTGGGTTTAAAAGGGAACTTATCTTTGCTTCTATATTACTCATCAAAAAGCAACATCTTTATTTGGGAAATCATTATATCAGGAAGTGGGAACGTCGGAATTTTTTGAATTATCACTCAAAGTGTAAATCACGTGTATGAACTGTATCAATCACCTCAACATATTCTTCAAAAAAAAAAAATCACCTCAACATAGTAAATTGTACATTTTTGGCAGAGTAATTTGTGCACATGCACCTTTCTACATTTTTGAAAGGATTAGTTCCCTTGTGTTTTATGAAAGGTCTGGTTCCATTTTTAATTGCATCTCCTTTTATTTTGGATGATTTGTGCTAATTGCCATCTAAAATATGACTTATGGTGAAAAGAAAGAGTTATACTTCTCTTACCTTTGCCTCTAAAGTTTTTTGGACTGGAGGTCTCGTTTTGCTCCGATTCCCAGATGTACTGAATAGATTAAGACTCAGTTGATGTAGGATGTTGTCGTCCTTTTTCTGTATCTTACTCGGTTCTGTTCTTTTTGTTGCATACACGAGTAATTCCCTTTATAATAAAGGTGTTCTTTTAGATTTATATTAATTATACCTTATAGAAAAAGATGATTATTAATATCAATTCTGCAAGTTATTTCGGTTTTTCAAGTACATGTTAGTGTGCACACACTTAGGCATCAAACAATCTCCTGATTTCCTTTATGGGCATTGTAGCGATGAGTGAATTTACCTGTTTTCTTCATGTCTGGAGATCATTCGTATTTCATTCTAGTTAAATGTCTGTTATTTCAGTTTCATCATTCTTTGTGAAATTATTGTAACTTCTGAACCACATTGTAAAGAATAGACATCTTCCTTTTTTACTTAATTTTTTTTATAAAATACCTTTTGCACCACCAAACTCCCCGAAATGTTCAAGTGCCCCCTTCTCCATGATCCACTCGTGGCATCTGCTACCATAAATGCTATTTTTACTCCATAATTGTTGAAAATGTACCTCATACACTCCCCAGGTGTTATATACTCTAGAAGTTCCTTTTTCTACTCCCCTAGTAGACACGTTTGTATCTCTTCCTTTTCGCTCTTCCTCTATATCTTGATTTGTGTTCCTTCCTCCTTTAGGTAAGCTCAGCCCTCCATTGACAAACCAACACACTTTAGATATTGATGAATTCTTTAAACAATGGAAGTATGACACAGATTATGGGCTTGCTGATGTCGACTTGATCATCCTAAGTTAGGTTAATTGAATCATAATTTCTAGCGGTTCAATGTTATTCCATCGTACTTGAATTTGACACAAAACTTTGCAATAGTTGTGTGGCTTTACTGCCACGTGCAGTTGTTCAATGGGGATGCAACTGGTCAAGTGTCAGCTTTTTTTATTTATTTATAGATCAACTTTCCATTTGAAATCCAATCTATGTCCATAGTGAAGTATTGATCTTTCCCCATAGTGCTCTTTGAATTTCTTATTCACTGGACGTGTATTTGTGATAGTTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGTTGGCTGTGCCTTGCTGGTTGCAGCTGACATGTTTTGCTTATGTGCTAGGAATTTACACACCCTGACTAATAATATCCAGATTAATTTTGAATCATATTACGTATATGTTTTATTCAAATTTTACAGAGATCTTTTGCTATGAATTCAAAGAAGAGAAAATCAAAGGATACAAGAAATTCCACTGTTTCACGCCCAGAACAATAAGGCGATACATCATTGATAATTTCTTAAATTTGTCAATAAATTTTATTTGAACACTTAAATAATATATTCTTATTCAATCACAAACTTCAGTCCAAATTTGAAAACACTCGTGTGTGTTTCGAGAGTTCATATCAACCTTTTTAATTATATCCATTCACTGAAACAAACTTGAGTTTTCGCGGCTTATTGAAATCAATGTTTTAAGTATGTAACTTATTCATGCAATGAATTTTTAAAAGTACACGTTAATCAAAAAATGTTTCGATGGTCAAGAACATAGGTGTACAAATTTACGCTGATTTGAAAATTATGTGACACAAAGTAGAAGAGAGGAGGGATGACGCGTCACGTCATCATAGGATGAGAGCCGAAGAAAAGGAAAAAGCAACAA</genome_strand>
        <mrna_strand>AAAATGACTGCAGAG..........................................................................................................................TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E599143" ref_strand="-" ref_description="SGN-E599143 [52124]">
      <seq>cgttttacctaattatgtgccctgatcaaagcccaataatgaacccagaaatctgggatagagaatggaagtttgacacgcagactttcaagtgctagcagcttgagtagtatggaggaaagctattttctgcaagcatctttggactcgtctgacaatttatctgagcgtagaaatgcattagagggtaatatgagtccatactttatgaagaacatgacgcctgcatttcgccagaaagatggggaacttgcgtcttatatgtctcgactggcatctatggaagccatccgtgactcccttgctgaggagttggttaaaatgactgcagagtgtgaaaagctacgttcagaagcttccatgctgcctggcatccgagcagagctagatgcacttaggaggagacactcggcagctcttgaattgatgggtgaacgtgatgaggagttggaagaacttcgtgctgatattattgatatgaaggagatgtacagagaacaagtaaatttgctcgtgaataagatccaagtgcttagctcatcactgagtgccacctgacagctgatttgttgatgagtgtttttttctggtctgtttcatcatggagggtgctgcagtgtatttggtgtatcacattgattttggacacgataattcttatgtcaccggttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaattgttgtatagcatattctttaaacagtggcgtattattggctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="50532" stop="11129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50232" g_stop="50169" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50168" i_stop="49849" i_length="320">
            <donor d_prob="0.975" d_score="0.85"/>
            <acceptor a_prob="0.371" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49848" g_stop="49643" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="273" r_length="206" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49642" i_stop="49406" i_length="237">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49405" g_stop="49346" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="333" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49345" i_stop="49224" i_length="122">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49223" g_stop="49110" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="447" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49109" i_stop="47546" i_length="1564">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47545" g_stop="47471" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="522" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47470" i_stop="47387" i_length="84">
            <donor d_prob="0.654" d_score="0.96"/>
            <acceptor a_prob="0.906" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47386" g_stop="47123" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="781" r_length="259" r_score="0.943"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47122" i_stop="46959" i_length="164">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.45"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46958" g_stop="46917" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="823" r_length="42" r_score="0.452"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E599143" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599143" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50232" e_stop="50169"/>
          <exon e_start="49848" e_stop="49643"/>
          <exon e_start="49405" e_stop="49346"/>
          <exon e_start="49223" e_stop="49110"/>
          <exon e_start="47545" e_stop="47471"/>
          <exon e_start="47386" e_stop="47123"/>
          <exon e_start="46958" e_stop="46917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTCTA-CTAATTATGTG-CCTGATCAGAGCCCAATAATGAA-GCAGAAATCTGGGATAGAAAATGGTAGTTAATACCAAATTTAGTTTTCAATATGATGCTTCATACATTTATGTTATTGCTACTGTTCTCTTCTCCATCATGTTTAACATTCTCTATTGTTTAACATGGTTGCTTCACTTCTGTATTTCCCTTCCCGTACTTGATTTTTCTTGTGCTTTACTTGAACCGAGGGACTATCGGAAACAACCTCTCTCTACCTTAACAAGGTAAGGTAGGGGTAGGCTGCGTACCGCCCTCCCCATACCCCACCTGTGGGATTACACTGAGTATTATGTTGTTGCTGCTGCTGCTGACGTTGTTGTTTAACAATCACCTAGTTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTGGTATGGACTCCCTGACTGATTCTATCAAACCGCGTATCATCTGAACTCATTTTATAATTTTATCGTATTAGTTGGCCTCTTTTCACTGTGTGGTGTTAAGTTTATTCAGTGGATCTATCTAAGTAACGAACCATAGGAGCTAAAGCTTACAGTGCTCTGTTTTCATGCAGGACTATTTTTCCTTTCAACTAGTTTTTTCCATTTGACCACCTAGTACTAACTTATTGATTCTTCCAGGCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAGGTGAACTCTTTTTTTCCAGATACTAACTTCTTTTTCTTTTTCCCTTAGAGCCTTCCCTTTGCGATGTCCCTTTTTTGGATAAGGAAATCATTATTAATAGAATGTCTTTATTATTTGTTTAGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAGGTACAAACTGAGTTTTTTTATACGATCCATTATTTTTCTCTACCACAGCTATGTTTCTTGATGATCTTAGTTTTGGGTTTAAAAGGGAACTTATCTTTGCTTCTATATTACTCATCAAAAAGCAACATCTTTATTTGGGAAATCATTATATCAGGAAGTGGGAACGTCGGAATTTTTTGAATTATCACTCAAAGTGTAAATCACGTGTATGAACTGTATCAATCACCTCAACATATTCTTCAAAAAAAAAAAATCACCTCAACATAGTAAATTGTACATTTTTGGCAGAGTAATTTGTGCACATGCACCTTTCTACATTTTTGAAAGGATTAGTTCCCTTGTGTTTTATGAAAGGTCTGGTTCCATTTTTAATTGCATCTCCTTTTATTTTGGATGATTTGTGCTAATTGCCATCTAAAATATGACTTATGGTGAAAAGAAAGAGTTATACTTCTCTTACCTTTGCCTCTAAAGTTTTTTGGACTGGAGGTCTCGTTTTGCTCCGATTCCCAGATGTACTGAATAGATTAAGACTCAGTTGATGTAGGATGTTGTCGTCCTTTTTCTGTATCTTACTCGGTTCTGTTCTTTTTGTTGCATACACGAGTAATTCCCTTTATAATAAAGGTGTTCTTTTAGATTTATATTAATTATACCTTATAGAAAAAGATGATTATTAATATCAATTCTGCAAGTTATTTCGGTTTTTCAAGTACATGTTAGTGTGCACACACTTAGGCATCAAACAATCTCCTGATTTCCTTTATGGGCATTGTAGCGATGAGTGAATTTACCTGTTTTCTTCATGTCTGGAGATCATTCGTATTTCATTCTAGTTAAATGTCTGTTATTTCAGTTTCATCATTCTTTGTGAAATTATTGTAACTTCTGAACCACATTGTAAAGAATAGACATCTTCCTTTTTTACTTAATTTTTTTTATAAAATACCTTTTGCACCACCAAACTCCCCGAAATGTTCAAGTGCCCCCTTCTCCATGATCCACTCGTGGCATCTGCTACCATAAATGCTATTTTTACTCCATAATTGTTGAAAATGTACCTCATACACTCCCCAGGTGTTATATACTCTAGAAGTTCCTTTTTCTACTCCCCTAGTAGACACGTTTGTATCTCTTCCTTTTCGCTCTTCCTCTATATCTTGATTTGTGTTCCTTCCTCCTTTAGGTAAGCTCAGCCCTCCATTGACAAACCAACACACTTTAGATATTGATGAATTCTTTAAACAATGGAAGTATGACACAGATTATGGGCTTGCTGATGTCGACTTGATCATCCTAAGTTAGGTTAATTGAATCATAATTTCTAGCGGTTCAATGTTATTCCATCGTACTTGAATTTGACACAAAACTTTGCAATAGTTGTGTGGCTTTACTGCCACGTGCAGTTGTTCAATGGGGATGCAACTGGTCAAGTGTCAGCTTTTTTTATTTATTTATAGATCAACTTTCCATTTGAAATCCAATCTATGTCCATAGTGAAGTATTGATCTTTCCCCATAGTGCTCTTTGAATTTCTTATTCACTGGACGTGTATTTGTGATAGTTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGTTGGCTGTGCCTTGCTGGTTGCAGCTGACATGTTTTGCTTATGTGCTAGGAATTTACACACCCTGACTAATAATATCCAGATTAATTTTGAATCATATTACGTATATGTTTTATTCAAATTTTACAGAGATCTTTTGCTATGAATTCAAAGAAGAGAAAATCAAAGGAT</genome_strand>
        <mrna_strand>CGTTTTACCTAATTATGTGCCCTGATCAAAGCCCAATAATGAACCCAGAAATCTGGGATAGAGAATG................................................................................................................................................................................................................................................................................................................................GAAGTTTGACACGCAGACTTTCAAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATGAGTCCATACTTTATGAAGAACATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG.............................................................................................................................................................................................................................................GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG..........................................................................................................................TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAGATGTACAGAGAACAAGTAAATTTGCTCGTGAATAAG....................................................................................ATCCAAGTGCTTAGCTCATCACTGAGTGCCACCTGACAGCTGATTTGTTGATGAGTGTTTTTTTCTGGTCTGTTTCATCAT----GGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGATAATTCTTATGTCACC-GGTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATTGTTGTATAGCATATTCTTTAAACAGTGGCGTATTATTGGCTTTAA....................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E236394" ref_strand="-" ref_description="SGN-E236394 [cLED-13-I22]">
      <seq>gagcgtagaaatgcattagagggtaatataagtccatactttatgaagagtatgacgcctgcatttcgccagaaagatggggaacttgcgtcttatatgtctcgactggcatctatggaagccatccgtgactcccttgctgaggagttggttaaaatgactgcagagtgtgaaaagctacgttcagaagcttccatgctgcctggcatccgagcagagctagatgcacttaggaggagacactcggcagctcttgaattgatgggtgaacgtgatgaggagttggaagaacttcgtgctgatattattgatatgaaggaaatgtacagagaacaagtaaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggagggagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaatcgttgtatagcatattcttttaacagtgacgtattattggctttaagctttgtttccaagtgcaattaaagttactgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="50050" stop="46789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49750" g_stop="49643" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49642" i_stop="49406" i_length="237">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49405" g_stop="49346" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="168" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49345" i_stop="49224" i_length="122">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49223" g_stop="49110" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="282" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49109" i_stop="47546" i_length="1564">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47545" g_stop="47471" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="357" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47470" i_stop="47387" i_length="84">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47386" g_stop="47085" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="659" r_length="302" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E236394" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236394" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49750" e_stop="49643"/>
          <exon e_start="49405" e_stop="49346"/>
          <exon e_start="49223" e_stop="49110"/>
          <exon e_start="47545" e_stop="47471"/>
          <exon e_start="47386" e_stop="47085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTGGTATGGACTCCCTGACTGATTCTATCAAACCGCGTATCATCTGAACTCATTTTATAATTTTATCGTATTAGTTGGCCTCTTTTCACTGTGTGGTGTTAAGTTTATTCAGTGGATCTATCTAAGTAACGAACCATAGGAGCTAAAGCTTACAGTGCTCTGTTTTCATGCAGGACTATTTTTCCTTTCAACTAGTTTTTTCCATTTGACCACCTAGTACTAACTTATTGATTCTTCCAGGCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAGGTGAACTCTTTTTTTCCAGATACTAACTTCTTTTTCTTTTTCCCTTAGAGCCTTCCCTTTGCGATGTCCCTTTTTTGGATAAGGAAATCATTATTAATAGAATGTCTTTATTATTTGTTTAGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAGGTACAAACTGAGTTTTTTTATACGATCCATTATTTTTCTCTACCACAGCTATGTTTCTTGATGATCTTAGTTTTGGGTTTAAAAGGGAACTTATCTTTGCTTCTATATTACTCATCAAAAAGCAACATCTTTATTTGGGAAATCATTATATCAGGAAGTGGGAACGTCGGAATTTTTTGAATTATCACTCAAAGTGTAAATCACGTGTATGAACTGTATCAATCACCTCAACATATTCTTCAAAAAAAAAAAATCACCTCAACATAGTAAATTGTACATTTTTGGCAGAGTAATTTGTGCACATGCACCTTTCTACATTTTTGAAAGGATTAGTTCCCTTGTGTTTTATGAAAGGTCTGGTTCCATTTTTAATTGCATCTCCTTTTATTTTGGATGATTTGTGCTAATTGCCATCTAAAATATGACTTATGGTGAAAAGAAAGAGTTATACTTCTCTTACCTTTGCCTCTAAAGTTTTTTGGACTGGAGGTCTCGTTTTGCTCCGATTCCCAGATGTACTGAATAGATTAAGACTCAGTTGATGTAGGATGTTGTCGTCCTTTTTCTGTATCTTACTCGGTTCTGTTCTTTTTGTTGCATACACGAGTAATTCCCTTTATAATAAAGGTGTTCTTTTAGATTTATATTAATTATACCTTATAGAAAAAGATGATTATTAATATCAATTCTGCAAGTTATTTCGGTTTTTCAAGTACATGTTAGTGTGCACACACTTAGGCATCAAACAATCTCCTGATTTCCTTTATGGGCATTGTAGCGATGAGTGAATTTACCTGTTTTCTTCATGTCTGGAGATCATTCGTATTTCATTCTAGTTAAATGTCTGTTATTTCAGTTTCATCATTCTTTGTGAAATTATTGTAACTTCTGAACCACATTGTAAAGAATAGACATCTTCCTTTTTTACTTAATTTTTTTTATAAAATACCTTTTGCACCACCAAACTCCCCGAAATGTTCAAGTGCCCCCTTCTCCATGATCCACTCGTGGCATCTGCTACCATAAATGCTATTTTTACTCCATAATTGTTGAAAATGTACCTCATACACTCCCCAGGTGTTATATACTCTAGAAGTTCCTTTTTCTACTCCCCTAGTAGACACGTTTGTATCTCTTCCTTTTCGCTCTTCCTCTATATCTTGATTTGTGTTCCTTCCTCCTTTAGGTAAGCTCAGCCCTCCATTGACAAACCAACACACTTTAGATATTGATGAATTCTTTAAACAATGGAAGTATGACACAGATTATGGGCTTGCTGATGTCGACTTGATCATCCTAAGTTAGGTTAATTGAATCATAATTTCTAGCGGTTCAATGTTATTCCATCGTACTTGAATTTGACACAAAACTTTGCAATAGTTGTGTGGCTTTACTGCCACGTGCAGTTGTTCAATGGGGATGCAACTGGTCAAGTGTCAGCTTTTTTTATTTATTTATAGATCAACTTTCCATTTGAAATCCAATCTATGTCCATAGTGAAGTATTGATCTTTCCCCATAGTGCTCTTTGAATTTCTTATTCACTGGACGTGTATTTGTGATAGTTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGT</genome_strand>
        <mrna_strand>GAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG.............................................................................................................................................................................................................................................GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG..........................................................................................................................TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E241301" ref_strand="-" ref_description="SGN-E241301 [cLED-26-D20]">
      <seq>agtgtgaaaagctacgttcagaagcttccatgctgcctggcatccgagcagagctagatgcacttaggaggagacactcggcagctcttgaattgatgggtgaacgtgatgaggagttggaagaacttcgtgctgatattattgatatgaaggaaatgtacagagaacaagtaaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggagggagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaatcgttgtatagcatattcttttaacagtgacgtattattggctttaagctttgtttccaagtgcaattaaagttactgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="49525" stop="46789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49225" g_stop="49110" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49109" i_stop="47546" i_length="1564">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47545" g_stop="47471" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="191" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47470" i_stop="47387" i_length="84">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47386" g_stop="47085" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="493" r_length="302" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E241301" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241301" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49225" e_stop="49110"/>
          <exon e_start="47545" e_stop="47471"/>
          <exon e_start="47386" e_stop="47085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAGGTACAAACTGAGTTTTTTTATACGATCCATTATTTTTCTCTACCACAGCTATGTTTCTTGATGATCTTAGTTTTGGGTTTAAAAGGGAACTTATCTTTGCTTCTATATTACTCATCAAAAAGCAACATCTTTATTTGGGAAATCATTATATCAGGAAGTGGGAACGTCGGAATTTTTTGAATTATCACTCAAAGTGTAAATCACGTGTATGAACTGTATCAATCACCTCAACATATTCTTCAAAAAAAAAAAATCACCTCAACATAGTAAATTGTACATTTTTGGCAGAGTAATTTGTGCACATGCACCTTTCTACATTTTTGAAAGGATTAGTTCCCTTGTGTTTTATGAAAGGTCTGGTTCCATTTTTAATTGCATCTCCTTTTATTTTGGATGATTTGTGCTAATTGCCATCTAAAATATGACTTATGGTGAAAAGAAAGAGTTATACTTCTCTTACCTTTGCCTCTAAAGTTTTTTGGACTGGAGGTCTCGTTTTGCTCCGATTCCCAGATGTACTGAATAGATTAAGACTCAGTTGATGTAGGATGTTGTCGTCCTTTTTCTGTATCTTACTCGGTTCTGTTCTTTTTGTTGCATACACGAGTAATTCCCTTTATAATAAAGGTGTTCTTTTAGATTTATATTAATTATACCTTATAGAAAAAGATGATTATTAATATCAATTCTGCAAGTTATTTCGGTTTTTCAAGTACATGTTAGTGTGCACACACTTAGGCATCAAACAATCTCCTGATTTCCTTTATGGGCATTGTAGCGATGAGTGAATTTACCTGTTTTCTTCATGTCTGGAGATCATTCGTATTTCATTCTAGTTAAATGTCTGTTATTTCAGTTTCATCATTCTTTGTGAAATTATTGTAACTTCTGAACCACATTGTAAAGAATAGACATCTTCCTTTTTTACTTAATTTTTTTTATAAAATACCTTTTGCACCACCAAACTCCCCGAAATGTTCAAGTGCCCCCTTCTCCATGATCCACTCGTGGCATCTGCTACCATAAATGCTATTTTTACTCCATAATTGTTGAAAATGTACCTCATACACTCCCCAGGTGTTATATACTCTAGAAGTTCCTTTTTCTACTCCCCTAGTAGACACGTTTGTATCTCTTCCTTTTCGCTCTTCCTCTATATCTTGATTTGTGTTCCTTCCTCCTTTAGGTAAGCTCAGCCCTCCATTGACAAACCAACACACTTTAGATATTGATGAATTCTTTAAACAATGGAAGTATGACACAGATTATGGGCTTGCTGATGTCGACTTGATCATCCTAAGTTAGGTTAATTGAATCATAATTTCTAGCGGTTCAATGTTATTCCATCGTACTTGAATTTGACACAAAACTTTGCAATAGTTGTGTGGCTTTACTGCCACGTGCAGTTGTTCAATGGGGATGCAACTGGTCAAGTGTCAGCTTTTTTTATTTATTTATAGATCAACTTTCCATTTGAAATCCAATCTATGTCCATAGTGAAGTATTGATCTTTCCCCATAGTGCTCTTTGAATTTCTTATTCACTGGACGTGTATTTGTGATAGTTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGT</genome_strand>
        <mrna_strand>AGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E265183" ref_strand="-" ref_description="SGN-E265183 [cLEI-2-D3]">
      <seq>gagtatgacgcctgcatttcgccagaaagatggggaacttgcgtcttatatgtctcgactggcatctatggaagccatccgtgactcccttgctgaggagttggttaaaatgactgcagagtgtgaaaagctacgttcagaagcttccatgctgcctggcatccgagcagagctagatgcacttaggaggagacactcggcagctcttgaattgatgggtgaacgtgatgaggagttggaagaacttcgtgctgatattattgatatgaaggaaatgtacagagaacaagtaaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggagggagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttacagtgaatcgttgtatagcatattcttttaacagtgacgtattattggctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="50003" stop="46823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49703" g_stop="49643" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49642" i_stop="49406" i_length="237">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49405" g_stop="49346" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="121" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49345" i_stop="49224" i_length="122">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49223" g_stop="49110" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="235" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49109" i_stop="47546" i_length="1564">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47545" g_stop="47471" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="310" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47470" i_stop="47387" i_length="84">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47386" g_stop="47123" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="574" r_length="264" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E265183" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265183" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49703" e_stop="49643"/>
          <exon e_start="49405" e_stop="49346"/>
          <exon e_start="49223" e_stop="49110"/>
          <exon e_start="47545" e_stop="47471"/>
          <exon e_start="47386" e_stop="47123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTGGTATGGACTCCCTGACTGATTCTATCAAACCGCGTATCATCTGAACTCATTTTATAATTTTATCGTATTAGTTGGCCTCTTTTCACTGTGTGGTGTTAAGTTTATTCAGTGGATCTATCTAAGTAACGAACCATAGGAGCTAAAGCTTACAGTGCTCTGTTTTCATGCAGGACTATTTTTCCTTTCAACTAGTTTTTTCCATTTGACCACCTAGTACTAACTTATTGATTCTTCCAGGCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAGGTGAACTCTTTTTTTCCAGATACTAACTTCTTTTTCTTTTTCCCTTAGAGCCTTCCCTTTGCGATGTCCCTTTTTTGGATAAGGAAATCATTATTAATAGAATGTCTTTATTATTTGTTTAGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAGGTACAAACTGAGTTTTTTTATACGATCCATTATTTTTCTCTACCACAGCTATGTTTCTTGATGATCTTAGTTTTGGGTTTAAAAGGGAACTTATCTTTGCTTCTATATTACTCATCAAAAAGCAACATCTTTATTTGGGAAATCATTATATCAGGAAGTGGGAACGTCGGAATTTTTTGAATTATCACTCAAAGTGTAAATCACGTGTATGAACTGTATCAATCACCTCAACATATTCTTCAAAAAAAAAAAATCACCTCAACATAGTAAATTGTACATTTTTGGCAGAGTAATTTGTGCACATGCACCTTTCTACATTTTTGAAAGGATTAGTTCCCTTGTGTTTTATGAAAGGTCTGGTTCCATTTTTAATTGCATCTCCTTTTATTTTGGATGATTTGTGCTAATTGCCATCTAAAATATGACTTATGGTGAAAAGAAAGAGTTATACTTCTCTTACCTTTGCCTCTAAAGTTTTTTGGACTGGAGGTCTCGTTTTGCTCCGATTCCCAGATGTACTGAATAGATTAAGACTCAGTTGATGTAGGATGTTGTCGTCCTTTTTCTGTATCTTACTCGGTTCTGTTCTTTTTGTTGCATACACGAGTAATTCCCTTTATAATAAAGGTGTTCTTTTAGATTTATATTAATTATACCTTATAGAAAAAGATGATTATTAATATCAATTCTGCAAGTTATTTCGGTTTTTCAAGTACATGTTAGTGTGCACACACTTAGGCATCAAACAATCTCCTGATTTCCTTTATGGGCATTGTAGCGATGAGTGAATTTACCTGTTTTCTTCATGTCTGGAGATCATTCGTATTTCATTCTAGTTAAATGTCTGTTATTTCAGTTTCATCATTCTTTGTGAAATTATTGTAACTTCTGAACCACATTGTAAAGAATAGACATCTTCCTTTTTTACTTAATTTTTTTTATAAAATACCTTTTGCACCACCAAACTCCCCGAAATGTTCAAGTGCCCCCTTCTCCATGATCCACTCGTGGCATCTGCTACCATAAATGCTATTTTTACTCCATAATTGTTGAAAATGTACCTCATACACTCCCCAGGTGTTATATACTCTAGAAGTTCCTTTTTCTACTCCCCTAGTAGACACGTTTGTATCTCTTCCTTTTCGCTCTTCCTCTATATCTTGATTTGTGTTCCTTCCTCCTTTAGGTAAGCTCAGCCCTCCATTGACAAACCAACACACTTTAGATATTGATGAATTCTTTAAACAATGGAAGTATGACACAGATTATGGGCTTGCTGATGTCGACTTGATCATCCTAAGTTAGGTTAATTGAATCATAATTTCTAGCGGTTCAATGTTATTCCATCGTACTTGAATTTGACACAAAACTTTGCAATAGTTGTGTGGCTTTACTGCCACGTGCAGTTGTTCAATGGGGATGCAACTGGTCAAGTGTCAGCTTTTTTTATTTATTTATAGATCAACTTTCCATTTGAAATCCAATCTATGTCCATAGTGAAGTATTGATCTTTCCCCATAGTGCTCTTTGAATTTCTTATTCACTGGACGTGTATTTGTGATAGTTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</genome_strand>
        <mrna_strand>GAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG.............................................................................................................................................................................................................................................GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG..........................................................................................................................TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTACAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E343118" ref_strand="+" ref_description="SGN-E343118 [cTOF-17-C22]">
      <seq>ggagttggaagaacttcgtgctgatattattgatatgaaggaaatgtacagagaacaagtaaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggagggagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaatcgttgtatagcatattcttttaacagtgacgtattattggctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="47847" stop="46823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47692" g_stop="47689" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47688" i_stop="47546" i_length="143">
            <donor d_prob="0.722" d_score="0.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47545" g_stop="47471" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="79" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47470" i_stop="47387" i_length="84">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47386" g_stop="47123" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="343" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E343118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47692" e_stop="47689"/>
          <exon e_start="47545" e_stop="47471"/>
          <exon e_start="47386" e_stop="47123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGCAACTGGTCAAGTGTCAGCTTTTTTTATTTATTTATAGATCAACTTTCCATTTGAAATCCAATCTATGTCCATAGTGAAGTATTGATCTTTCCCCATAGTGCTCTTTGAATTTCTTATTCACTGGACGTGTATTTGTGATAGTTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</genome_strand>
        <mrna_strand>GGAG...............................................................................................................................................TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E229991" ref_strand="-" ref_description="SGN-E229991 [cLEL-33-P11]">
      <seq>tgatattattgatatgaaggaaatgtacagagaacaagtaaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggaggaagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaatcgttgtatagcatattcttttaacagtgacgtattattggctttaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="47828" stop="46823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47528" g_stop="47471" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47470" i_stop="47387" i_length="84">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47386" g_stop="47123" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="322" r_length="264" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="323" polyA_stop="336"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E229991" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229991" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47528" e_stop="47471"/>
          <exon e_start="47386" e_stop="47123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</genome_strand>
        <mrna_strand>TGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGAAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E230213" ref_strand="-" ref_description="SGN-E230213 [cLEL-33-P11]">
      <seq>aaatttactcgtgaataagatccaggtgcttagttcatcactgagtgccacctgacagctgatatgttgatgaatttttttttctggtctgtttcatcatggagggagggtgctgcagtgtatttggtgtatcacattgattttggacacgacaattcttatgtcaccagtttttattataaatctatagagaaactaccttttacagaggtttgttattgtaattttaaagtgaatcgttgtatagcatattcttttaacagtgacgtattattggctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="47789" stop="46823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47489" g_stop="47471" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47470" i_stop="47387" i_length="84">
            <donor d_prob="0.654" d_score="0.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47386" g_stop="47123" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="283" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="298"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E230213" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230213" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47489" e_stop="47471"/>
          <exon e_start="47386" e_stop="47123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</genome_strand>
        <mrna_strand>AAATTTACTCGTGAATAAG....................................................................................ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E599495" ref_strand="+" ref_description="SGN-E599495 [52484]">
      <seq>attgatatgaaggagatgtacagagaacaagtaaatttgctcgtgaataagatccaagtgcttagctcatcactgagtgccacctgacagctgatttgttgatgagtgtttttttctggtctgtttcatcatggagggtgctgcagtgtatttggtgtatcacattgattttggacacgataattcttatgtcaccggttttattataaatctatagagaaactaccttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="47821" stop="46897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47521" g_stop="47471" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47470" i_stop="47387" i_length="84">
            <donor d_prob="0.654" d_score="0.96"/>
            <acceptor a_prob="0.906" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47386" g_stop="47196" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="237" r_length="186" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E599495" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47521" e_stop="47471"/>
          <exon e_start="47386" e_stop="47196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAG</genome_strand>
        <mrna_strand>ATTGATATGAAGGAGATGTACAGAGAACAAGTAAATTTGCTCGTGAATAAG....................................................................................ATCCAAGTGCTTAGCTCATCACTGAGTGCCACCTGACAGCTGATTTGTTGATGAGTGTTTTTTTCTGGTCTGTTTCATCAT----GGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGATAATTCTTATGTCACC-GGTTTTATTATAAATCTATAGAGAAACTACCTTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E464878" ref_strand="+" ref_description="SGN-E464878 [cPRO-19-I22]">
      <seq>tgcattagagggtaatatgagtccatactttatgaagaacatgacgcctgcatttcgccagaaagatggggaacttgcgtcttatatgtctcgactggcatctatggaagccatccgtgactcccttgctgaggagttggttaaaatgactgcagagtgtgaaaagctacgttcagaagcttccatgctgcctggcatccgagcagagctagatgcacttaggaggagacactcggcagctcttgaattgatgggtgaacgtgatgaggagttggaagaacttcgtgctgatattattgatatgaaggagatgtacagagaacaagtaaatttgctcgtgaataagatccaagtgcttagctcatcactgagtgccacctgacagctgatttgttgatgagtgtttttttctggtctgtttcatcatgganggtgctgcagtgtatttggtgtatcacattgattttggacacgataattcttatgtcaccggttttattataaatctatagagaaactacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="50039" stop="46902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49739" g_stop="49643" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49642" i_stop="49406" i_length="237">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49405" g_stop="49346" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="157" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49345" i_stop="49224" i_length="122">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49223" g_stop="49110" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="271" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49109" i_stop="47546" i_length="1564">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47545" g_stop="47471" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="346" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47470" i_stop="47387" i_length="84">
            <donor d_prob="0.654" d_score="0.96"/>
            <acceptor a_prob="0.906" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47386" g_stop="47202" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="526" r_length="180" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E464878" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49739" e_stop="49643"/>
          <exon e_start="49405" e_stop="49346"/>
          <exon e_start="49223" e_stop="49110"/>
          <exon e_start="47545" e_stop="47471"/>
          <exon e_start="47386" e_stop="47202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTGGTATGGACTCCCTGACTGATTCTATCAAACCGCGTATCATCTGAACTCATTTTATAATTTTATCGTATTAGTTGGCCTCTTTTCACTGTGTGGTGTTAAGTTTATTCAGTGGATCTATCTAAGTAACGAACCATAGGAGCTAAAGCTTACAGTGCTCTGTTTTCATGCAGGACTATTTTTCCTTTCAACTAGTTTTTTCCATTTGACCACCTAGTACTAACTTATTGATTCTTCCAGGCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAGGTGAACTCTTTTTTTCCAGATACTAACTTCTTTTTCTTTTTCCCTTAGAGCCTTCCCTTTGCGATGTCCCTTTTTTGGATAAGGAAATCATTATTAATAGAATGTCTTTATTATTTGTTTAGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAGGTACAAACTGAGTTTTTTTATACGATCCATTATTTTTCTCTACCACAGCTATGTTTCTTGATGATCTTAGTTTTGGGTTTAAAAGGGAACTTATCTTTGCTTCTATATTACTCATCAAAAAGCAACATCTTTATTTGGGAAATCATTATATCAGGAAGTGGGAACGTCGGAATTTTTTGAATTATCACTCAAAGTGTAAATCACGTGTATGAACTGTATCAATCACCTCAACATATTCTTCAAAAAAAAAAAATCACCTCAACATAGTAAATTGTACATTTTTGGCAGAGTAATTTGTGCACATGCACCTTTCTACATTTTTGAAAGGATTAGTTCCCTTGTGTTTTATGAAAGGTCTGGTTCCATTTTTAATTGCATCTCCTTTTATTTTGGATGATTTGTGCTAATTGCCATCTAAAATATGACTTATGGTGAAAAGAAAGAGTTATACTTCTCTTACCTTTGCCTCTAAAGTTTTTTGGACTGGAGGTCTCGTTTTGCTCCGATTCCCAGATGTACTGAATAGATTAAGACTCAGTTGATGTAGGATGTTGTCGTCCTTTTTCTGTATCTTACTCGGTTCTGTTCTTTTTGTTGCATACACGAGTAATTCCCTTTATAATAAAGGTGTTCTTTTAGATTTATATTAATTATACCTTATAGAAAAAGATGATTATTAATATCAATTCTGCAAGTTATTTCGGTTTTTCAAGTACATGTTAGTGTGCACACACTTAGGCATCAAACAATCTCCTGATTTCCTTTATGGGCATTGTAGCGATGAGTGAATTTACCTGTTTTCTTCATGTCTGGAGATCATTCGTATTTCATTCTAGTTAAATGTCTGTTATTTCAGTTTCATCATTCTTTGTGAAATTATTGTAACTTCTGAACCACATTGTAAAGAATAGACATCTTCCTTTTTTACTTAATTTTTTTTATAAAATACCTTTTGCACCACCAAACTCCCCGAAATGTTCAAGTGCCCCCTTCTCCATGATCCACTCGTGGCATCTGCTACCATAAATGCTATTTTTACTCCATAATTGTTGAAAATGTACCTCATACACTCCCCAGGTGTTATATACTCTAGAAGTTCCTTTTTCTACTCCCCTAGTAGACACGTTTGTATCTCTTCCTTTTCGCTCTTCCTCTATATCTTGATTTGTGTTCCTTCCTCCTTTAGGTAAGCTCAGCCCTCCATTGACAAACCAACACACTTTAGATATTGATGAATTCTTTAAACAATGGAAGTATGACACAGATTATGGGCTTGCTGATGTCGACTTGATCATCCTAAGTTAGGTTAATTGAATCATAATTTCTAGCGGTTCAATGTTATTCCATCGTACTTGAATTTGACACAAAACTTTGCAATAGTTGTGTGGCTTTACTGCCACGTGCAGTTGTTCAATGGGGATGCAACTGGTCAAGTGTCAGCTTTTTTTATTTATTTATAGATCAACTTTCCATTTGAAATCCAATCTATGTCCATAGTGAAGTATTGATCTTTCCCCATAGTGCTCTTTGAATTTCTTATTCACTGGACGTGTATTTGTGATAGTTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAGGTATATCATTGCTCAATTATTTAGGTCATTTCTTTCCTTTGCGGGGTACTGGAAATCCACATTTTTCTCTTGATATTCTTGCAGATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTT</genome_strand>
        <mrna_strand>TGCATTAGAGGGTAATATGAGTCCATACTTTATGAAGAACATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG.............................................................................................................................................................................................................................................GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG..........................................................................................................................TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAGATGTACAGAGAACAAGTAAATTTGCTCGTGAATAAG....................................................................................ATCCAAGTGCTTAGCTCATCACTGAGTGCCACCTGACAGCTGATTTGTTGATGAGTGTTTTTTTCTGGTCTGTTTCATCAT----GGANGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGATAATTCTTATGTCACC-GGTTTTATTATAAATCTATAGAGAAACTACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E271782" ref_strand="+" ref_description="SGN-E271782 [cLEM-8-K5]">
      <seq>gctgctgttgagagaaccttgaattcacgtcttcaggaagccgaggcaaaagctgcaactggagaagaaaaggagcgatctattaatgaacgcctttctcaaaccctatcccgaatcaatgttcttgaggctcagatatcttgtcttagagctgagcagacacagctaacaaggtcccttgacaaagagagacagcgggccgcagagaataggcaagaatatcttgctctaaaggaggaagctgagactaacgaaggtcgtgtgaatcagcttgaagaggaaattaaagaactcagaaggaaacacaagcaggaaatacaagaagcattaactcatcaggaactcctgcggcaggagttggaaagggagaaaactgctcgtttggatcaagaaagggccgctcgttctactaattatgtgcctgatcagagcccaataatgaagcagaaatctgggatagaaaatgttgcaggaagtttgacacgcagactttcgagtgctagcagcttgagtagtatggaggaaagctattttctgcaagcatctttggactcgtctgacaatttatctgagcgtagaaatgcattagagggtaatataagtccatactttatgaagagtatgacgcctgcatttcgccagaaagatggggaacttgcgtcttatatgtctcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="51800" stop="49345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51500" g_stop="51465" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51464" i_stop="51394" i_length="71">
            <donor d_prob="0.933" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51393" g_stop="51295" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="135" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51294" i_stop="51219" i_length="76">
            <donor d_prob="0.378" d_score="1.00"/>
            <acceptor a_prob="0.254" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51218" g_stop="51000" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="354" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50999" i_stop="50281" i_length="719">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="466" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50168" i_stop="49855" i_length="314">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.298" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49854" g_stop="49645" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="676" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E271782" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51500" e_stop="51465"/>
          <exon e_start="51393" e_stop="51295"/>
          <exon e_start="51218" e_stop="51000"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="49854" e_stop="49645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAGGTCTTAAGAGAAACATATAGAAACTTTATTTATAGTTGAAACTCGAAGGGTTTCTTAATTTTACTTCACAGGAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAGGTTCTTTCACCTATTCCTTTGACGCTGCTTCATAGCGCTTCTCCCCAGGAATTTGCTTACAAATTTAGTATTGCAGATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAGGTAACAAAATTATGTTTTACTTTCCTATTAATTTGCTGTCTCAATCCCCTTTTAGCATCAATGATGCTTGTGGTTTTACATGCAGCATAATTTAAATATGATCAAGATGCTTCAATTGAAGAATATGCAAATCTCGTTTTGTCGATTTACTCATTTTTTACATATCAGCCAATGGTTGGCCTTCTTGGCTTTTGAATTATTTTATTCTCTTTTAAGGTCTCAGATCTGCTGAAATGGTCTTTTAGCGTATACCTAATCAGTGGCAGTAAAGCTCCTGTCACCTGTACTTTGCCCCTCATTGTCATTGTTCCCCTTTGATCTTGTCTTCAAAAGCATAAAAAGATATACAGATAAGGAAAATTGTTTTTATACAAGCAAGGAGACAAGTTAAAATTTTATCATTTAGTGTGCCAGTTTGATTACCAACAGTCAGAGCAGCAGGTGAAGCAGTTCATCCATGTATGCTAACTTTTTATGTGATTCGGCTCTATTTTTCTCCTATTCTGAAGCCTCTGCTTCTCAATCTTGATGGTGAGGGAAGAGAAATGTTATGTATGATGGCAGTAGAAGAACCTTTATCACATAGGTATTGGTGGAATCTATCTAGACTGGATTCATACCTGGAGACAACATAGAGTTGCTTCTGACTTTGTTGTTAATGCTTTGATTTTATTAATGAGAAGTGCATGTCTGAGTCAGTTGTCACCAATATTTTACAGGAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATGGTAGTTAATACCAAATTTAGTTTTCAATATGATGCTTCATACATTTATGTTATTGCTACTGTTCTCTTCTCCATCATGTTTAACATTCTCTATTGTTTAACATGGTTGCTTCACTTCTGTATTTCCCTTCCCGTACTTGATTTTTCTTGTGCTTTACTTGAACCGAGGGACTATCGGAAACAACCTCTCTCTACCTTAACAAGGTAAGGTAGGGGTAGGCTGCGTACCGCCCTCCCCATACCCCACCTGTGGGATTACACTGAGTATTATGTTGTTGCTGCTGCTGCTGACGTTGTTGTTTAACAATCACCTAGTTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGAC</genome_strand>
        <mrna_strand>GCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG.......................................................................GAAGCCGAGGCAAAAGCTGCAACTGGAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG............................................................................ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG..........................................................................................................................................................................................................................................................................................................................TTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E250820" ref_strand="+" ref_description="SGN-E250820 [cLEG-13-M9]">
      <seq>ccagaaaggctgaatcttgggctgttgttgagagaaccttgaattcacgtcttgaggaagccgaggcaaaagctgcgacttcagaagaaaaggagcgatctattaatgaacgcctttctcaaaccctatcccgaatcaatgttcttgaggctcagatatcttgtcttagagctgagcagacacagctaacaaggtcccttgacaaagagagacagcgggccgcagagaataggcaagaatatcttgctctaaaggaggaagctgagactaacgaaggtcgtgtgaatcagcttgaagaggaaattaaagaactcagaaggaaacacaagcaggaaatacaagaagcattaactcatcaggaactcctgcggcaggagttggaaagggagaaaactgctcgtttggatcaagaaagggccgctcgttctactaattatgtgcctgatcagagcccaataatgaagcagaaatctgggatagaaaatgttgcaggaagtttgacacgtagactttcgagtgctaacagcttgagtaggatggaggaaagctattttctgcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="51820" stop="49478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51520" g_stop="51465" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51464" i_stop="51394" i_length="71">
            <donor d_prob="0.933" d_score="0.94"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51393" g_stop="51295" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="155" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51294" i_stop="51219" i_length="76">
            <donor d_prob="0.378" d_score="1.00"/>
            <acceptor a_prob="0.254" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51218" g_stop="51000" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="374" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50999" i_stop="50281" i_length="719">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="486" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50168" i_stop="49855" i_length="314">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.298" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49854" g_stop="49778" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="563" r_length="77" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E250820" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51520" e_stop="51465"/>
          <exon e_start="51393" e_stop="51295"/>
          <exon e_start="51218" e_stop="51000"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="49854" e_stop="49778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAGGTCTTAAGAGAAACATATAGAAACTTTATTTATAGTTGAAACTCGAAGGGTTTCTTAATTTTACTTCACAGGAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAGGTTCTTTCACCTATTCCTTTGACGCTGCTTCATAGCGCTTCTCCCCAGGAATTTGCTTACAAATTTAGTATTGCAGATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAGGTAACAAAATTATGTTTTACTTTCCTATTAATTTGCTGTCTCAATCCCCTTTTAGCATCAATGATGCTTGTGGTTTTACATGCAGCATAATTTAAATATGATCAAGATGCTTCAATTGAAGAATATGCAAATCTCGTTTTGTCGATTTACTCATTTTTTACATATCAGCCAATGGTTGGCCTTCTTGGCTTTTGAATTATTTTATTCTCTTTTAAGGTCTCAGATCTGCTGAAATGGTCTTTTAGCGTATACCTAATCAGTGGCAGTAAAGCTCCTGTCACCTGTACTTTGCCCCTCATTGTCATTGTTCCCCTTTGATCTTGTCTTCAAAAGCATAAAAAGATATACAGATAAGGAAAATTGTTTTTATACAAGCAAGGAGACAAGTTAAAATTTTATCATTTAGTGTGCCAGTTTGATTACCAACAGTCAGAGCAGCAGGTGAAGCAGTTCATCCATGTATGCTAACTTTTTATGTGATTCGGCTCTATTTTTCTCCTATTCTGAAGCCTCTGCTTCTCAATCTTGATGGTGAGGGAAGAGAAATGTTATGTATGATGGCAGTAGAAGAACCTTTATCACATAGGTATTGGTGGAATCTATCTAGACTGGATTCATACCTGGAGACAACATAGAGTTGCTTCTGACTTTGTTGTTAATGCTTTGATTTTATTAATGAGAAGTGCATGTCTGAGTCAGTTGTCACCAATATTTTACAGGAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATGGTAGTTAATACCAAATTTAGTTTTCAATATGATGCTTCATACATTTATGTTATTGCTACTGTTCTCTTCTCCATCATGTTTAACATTCTCTATTGTTTAACATGGTTGCTTCACTTCTGTATTTCCCTTCCCGTACTTGATTTTTCTTGTGCTTTACTTGAACCGAGGGACTATCGGAAACAACCTCTCTCTACCTTAACAAGGTAAGGTAGGGGTAGGCTGCGTACCGCCCTCCCCATACCCCACCTGTGGGATTACACTGAGTATTATGTTGTTGCTGCTGCTGCTGACGTTGTTGTTTAACAATCACCTAGTTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCA</genome_strand>
        <mrna_strand>CCAGAAAGGCTGAATCTTGGGCTGTTGTTGAGAGAACCTTGAATTCACGTCTTGAG.......................................................................GAAGCCGAGGCAAAAGCTGCGACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG............................................................................ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG..........................................................................................................................................................................................................................................................................................................................TTGCAGGAAGTTTGACACGTAGACTTTCGAGTGCTAACAGCTTGAGTAGGATGGAGGAAAGCTATTTTCTGCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E414169" ref_strand="+" ref_description="SGN-E414169 [STM-19-G11]">
      <seq>gcttgttcaggcacttgaggaattaaggcaaacacttaccagaacggagcagcaggcagtttttaaagaagatatgctgcgcagagaaattgaggacctccagaaaagataccaagccagtgaacgtcgatgtgaggagttgataacacaagttcccgaatctaccagacctcttctcaggcagatagaagccatacaggaaacaaactccagaaaggctgaagcttgggctgctgttgagagaactttgaattcacgtcttcaggaagccgaggcaaaagctgcaacttcagaggaaaaggagcgatctattaatgaacgcctttctcaaaccttgtcccgaatcaatgttcttgaggctcagatatcttgtcttagagctgagcagacacagctaacaaggtcccttgacaaagagagacagcgggccgcagagaataggcaagaatatcttgctctaaaggaggaagctgagactaacgaaggtcgtgtgaatcagcttgaagaggaaattaaagaactcagaaggaaacacaagcaggaattancagaagcattaactcatcaggaaactctgcggcaggagttggaaagggagaaaactgctcngttggatcaagaaagggccgctcgttctactaattatgtgcctgatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="52291" stop="49904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51991" g_stop="51937" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51936" i_stop="51860" i_length="77">
            <donor d_prob="0.683" d_score="0.98"/>
            <acceptor a_prob="0.862" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51859" g_stop="51800" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="115" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51799" i_stop="51718" i_length="82">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51717" g_stop="51634" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="199" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51633" i_stop="51531" i_length="103">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51530" g_stop="51465" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="265" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51464" i_stop="51394" i_length="71">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51393" g_stop="51295" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="364" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51294" i_stop="51219" i_length="76">
            <donor d_prob="0.378" d_score="0.96"/>
            <acceptor a_prob="0.254" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51218" g_stop="51000" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="583" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50999" i_stop="50281" i_length="719">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.820" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50280" g_stop="50204" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="660" r_length="77" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E414169" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51991" e_stop="51937"/>
          <exon e_start="51859" e_stop="51800"/>
          <exon e_start="51717" e_stop="51634"/>
          <exon e_start="51530" e_stop="51465"/>
          <exon e_start="51393" e_stop="51295"/>
          <exon e_start="51218" e_stop="51000"/>
          <exon e_start="50280" e_stop="50204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAGGTTTATATTCTTGAATAGTGTCTTATCGGGGTTCATCAATCTAATTTCGCAGGGCCTAACATTTTTTTCACCTGCAGGCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAAGTATAACTTTCTCTTTTGCAACTTTTTGTGCTTGACTACTTAATCATGTTTCCTTTACATATACTTATTCTTCTGTGTTTAGGCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAGGTTTCACTGCAGCTGAGATATTATTTTTCATATCCTATATATGGTCATGGTATATGGACCGCTCATTTAGTGTCTATGTTTTATGCCTCTTCATTGATTACAGGAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAGGTCTTAAGAGAAACATATAGAAACTTTATTTATAGTTGAAACTCGAAGGGTTTCTTAATTTTACTTCACAGGAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAGGTTCTTTCACCTATTCCTTTGACGCTGCTTCATAGCGCTTCTCCCCAGGAATTTGCTTACAAATTTAGTATTGCAGATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAGGTAACAAAATTATGTTTTACTTTCCTATTAATTTGCTGTCTCAATCCCCTTTTAGCATCAATGATGCTTGTGGTTTTACATGCAGCATAATTTAAATATGATCAAGATGCTTCAATTGAAGAATATGCAAATCTCGTTTTGTCGATTTACTCATTTTTTACATATCAGCCAATGGTTGGCCTTCTTGGCTTTTGAATTATTTTATTCTCTTTTAAGGTCTCAGATCTGCTGAAATGGTCTTTTAGCGTATACCTAATCAGTGGCAGTAAAGCTCCTGTCACCTGTACTTTGCCCCTCATTGTCATTGTTCCCCTTTGATCTTGTCTTCAAAAGCATAAAAAGATATACAGATAAGGAAAATTGTTTTTATACAAGCAAGGAGACAAGTTAAAATTTTATCATTTAGTGTGCCAGTTTGATTACCAACAGTCAGAGCAGCAGGTGAAGCAGTTCATCCATGTATGCTAACTTTTTATGTGATTCGGCTCTATTTTTCTCCTATTCTGAAGCCTCTGCTTCTCAATCTTGATGGTGAGGGAAGAGAAATGTTATGTATGATGGCAGTAGAAGAACCTTTATCACATAGGTATTGGTGGAATCTATCTAGACTGGATTCATACCTGGAGACAACATAGAGTTGCTTCTGACTTTGTTGTTAATGCTTTGATTTTATTAATGAGAAGTGCATGTCTGAGTCAGTTGTCACCAATATTTTACAGGAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAG</genome_strand>
        <mrna_strand>GCTTGTTCAGGCACTTGAGGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG.............................................................................GCAGTTTTTAAAGAAGATATGCTGCGCAGAGAAATTGAGGACCTCCAGAAAAGATACCAA..................................................................................GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATACAG.......................................................................................................GAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACTTTGAATTCACGTCTTCAG.......................................................................GAAGCCGAGGCAAAAGCTGCAACTTCAGAGGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCTTGTCCCGAATCAATGTTCTTGAGGCTCAG............................................................................ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAATTANCAGAAGCATTAACTCATCAGGAAACTCTGCGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGGGAGAAAACTGCTCNGTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E268961" ref_strand="+" ref_description="SGN-E268961 [cLEI-16-I13]">
      <seq>ttaaagaagatatgctttgtaaagaaatagaagatctccagaaaagatgcgcggccagtgaacgtcgatgtgaggagtggataacacacgttcccgaatttaccagacctcttcttacgcacatagaagtcatgcaggaaacaaactccaaaaaggctgaagcttgggctgctgctgagagaaccttgaattcacgtcttcaggaagccgaggcaaaagctgcggcttcagaagaaaaggagcgatctattaatgaacgcctatctcaaaccctatcccgaatcaatgatcttgaggctcagatatctcgtcttagagctgagcagacacagctaacaaggtcccttgacaaagagagacagcgggccgtagagaataggcaagaatatcttgctctaaaggaggaagctgagactaacgaaggtcgtgtgaatcagcttgaagaggaaattaaagaactcagaaggaaacacaagcgggaaatacacgaagcattaactcatcaggaactcctgcggcaggagttggaaagggagaaaactgctcgtttggatcaagacagggccgctcgttctactaattatgtgcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="52152" stop="49909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51852" g_stop="51800" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.830"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51799" i_stop="51718" i_length="82">
            <donor d_prob="0.997" d_score="0.82"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51717" g_stop="51634" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="137" r_length="84" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51633" i_stop="51531" i_length="103">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51530" g_stop="51465" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="203" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51464" i_stop="51394" i_length="71">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51393" g_stop="51295" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="302" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51294" i_stop="51219" i_length="76">
            <donor d_prob="0.378" d_score="0.96"/>
            <acceptor a_prob="0.254" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51218" g_stop="51000" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="521" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50999" i_stop="50281" i_length="719">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.820" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50280" g_stop="50209" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="593" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E268961" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51852" e_stop="51800"/>
          <exon e_start="51717" e_stop="51634"/>
          <exon e_start="51530" e_stop="51465"/>
          <exon e_start="51393" e_stop="51295"/>
          <exon e_start="51218" e_stop="51000"/>
          <exon e_start="50280" e_stop="50209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAAGTATAACTTTCTCTTTTGCAACTTTTTGTGCTTGACTACTTAATCATGTTTCCTTTACATATACTTATTCTTCTGTGTTTAGGCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAGGTTTCACTGCAGCTGAGATATTATTTTTCATATCCTATATATGGTCATGGTATATGGACCGCTCATTTAGTGTCTATGTTTTATGCCTCTTCATTGATTACAGGAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAGGTCTTAAGAGAAACATATAGAAACTTTATTTATAGTTGAAACTCGAAGGGTTTCTTAATTTTACTTCACAGGAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAGGTTCTTTCACCTATTCCTTTGACGCTGCTTCATAGCGCTTCTCCCCAGGAATTTGCTTACAAATTTAGTATTGCAGATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAGGTAACAAAATTATGTTTTACTTTCCTATTAATTTGCTGTCTCAATCCCCTTTTAGCATCAATGATGCTTGTGGTTTTACATGCAGCATAATTTAAATATGATCAAGATGCTTCAATTGAAGAATATGCAAATCTCGTTTTGTCGATTTACTCATTTTTTACATATCAGCCAATGGTTGGCCTTCTTGGCTTTTGAATTATTTTATTCTCTTTTAAGGTCTCAGATCTGCTGAAATGGTCTTTTAGCGTATACCTAATCAGTGGCAGTAAAGCTCCTGTCACCTGTACTTTGCCCCTCATTGTCATTGTTCCCCTTTGATCTTGTCTTCAAAAGCATAAAAAGATATACAGATAAGGAAAATTGTTTTTATACAAGCAAGGAGACAAGTTAAAATTTTATCATTTAGTGTGCCAGTTTGATTACCAACAGTCAGAGCAGCAGGTGAAGCAGTTCATCCATGTATGCTAACTTTTTATGTGATTCGGCTCTATTTTTCTCCTATTCTGAAGCCTCTGCTTCTCAATCTTGATGGTGAGGGAAGAGAAATGTTATGTATGATGGCAGTAGAAGAACCTTTATCACATAGGTATTGGTGGAATCTATCTAGACTGGATTCATACCTGGAGACAACATAGAGTTGCTTCTGACTTTGTTGTTAATGCTTTGATTTTATTAATGAGAAGTGCATGTCTGAGTCAGTTGTCACCAATATTTTACAGGAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGAT</genome_strand>
        <mrna_strand>TTAAAGAAGATATGCTTTGTAAAGAAATAGAAGATCTCCAGAAAAGATGCGCG..................................................................................GCCAGTGAACGTCGATGTGAGGAGTGGATAACACACGTTCCCGAATTTACCAGACCTCTTCTTACGCACATAGAAGTCATGCAG.......................................................................................................GAAACAAACTCCAAAAAGGCTGAAGCTTGGGCTGCTGCTGAGAGAACCTTGAATTCACGTCTTCAG.......................................................................GAAGCCGAGGCAAAAGCTGCGGCTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTATCTCAAACCCTATCCCGAATCAATGATCTTGAGGCTCAG............................................................................ATATCTCGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGTAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCGGGAAATACACGAAGCATTAACTCATCAGGAACTCCTGCGGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGACAGGGCCGCTCGTTCTACTAATTATGTGCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E409311" ref_strand="+" ref_description="SGN-E409311 [PPI-13-B6]">
      <seq>gagaggctgaagaccgtcaagcaatgcttgttcaggcacttgaagaattaaggcaaacacttaccagaacggagcagcaggcagtttttaaagaagatatgctgcgcagagaaattgaggacctccagaaaagataccaagccagtgaacgtcgatgtgaggagttgataacacaagttcccgaatctaccagacctcttctcaggcagatagaagccatgcaggaaacaaacttcagaaaggctgaagcttgggctgctgttgagagaactttgaattcacgtcttcaggaagccgaggcaaaagctgcaacttcagaggaaaaggagcgatctattaatgaacgcctttctcaaaccttgtcccgaatcaatgttcttgaggctcagatatcttgtcttagagctgagcagacacagctaacaaggtcccttgacaaagagagacagcgggccgcagagaataggcaagaatatcttgctctgaaggaggaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="52316" stop="50810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52016" g_stop="51937" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51936" i_stop="51860" i_length="77">
            <donor d_prob="0.683" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51859" g_stop="51800" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="140" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51799" i_stop="51718" i_length="82">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51717" g_stop="51634" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="224" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51633" i_stop="51531" i_length="103">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51530" g_stop="51465" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="290" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51464" i_stop="51394" i_length="71">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51393" g_stop="51295" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="389" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51294" i_stop="51219" i_length="76">
            <donor d_prob="0.378" d_score="0.96"/>
            <acceptor a_prob="0.254" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51218" g_stop="51110" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="498" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E409311" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52016" e_stop="51937"/>
          <exon e_start="51859" e_stop="51800"/>
          <exon e_start="51717" e_stop="51634"/>
          <exon e_start="51530" e_stop="51465"/>
          <exon e_start="51393" e_stop="51295"/>
          <exon e_start="51218" e_stop="51110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAGGTTTATATTCTTGAATAGTGTCTTATCGGGGTTCATCAATCTAATTTCGCAGGGCCTAACATTTTTTTCACCTGCAGGCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAAGTATAACTTTCTCTTTTGCAACTTTTTGTGCTTGACTACTTAATCATGTTTCCTTTACATATACTTATTCTTCTGTGTTTAGGCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAGGTTTCACTGCAGCTGAGATATTATTTTTCATATCCTATATATGGTCATGGTATATGGACCGCTCATTTAGTGTCTATGTTTTATGCCTCTTCATTGATTACAGGAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAGGTCTTAAGAGAAACATATAGAAACTTTATTTATAGTTGAAACTCGAAGGGTTTCTTAATTTTACTTCACAGGAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAGGTTCTTTCACCTATTCCTTTGACGCTGCTTCATAGCGCTTCTCCCCAGGAATTTGCTTACAAATTTAGTATTGCAGATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTG</genome_strand>
        <mrna_strand>GAGAGGCTGAAGACCGTCAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG.............................................................................GCAGTTTTTAAAGAAGATATGCTGCGCAGAGAAATTGAGGACCTCCAGAAAAGATACCAA..................................................................................GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAG.......................................................................................................GAAACAAACTTCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACTTTGAATTCACGTCTTCAG.......................................................................GAAGCCGAGGCAAAAGCTGCAACTTCAGAGGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCTTGTCCCGAATCAATGTTCTTGAGGCTCAG............................................................................ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTGAAGGAGGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E331851" ref_strand="+" ref_description="SGN-E331851 [cTOD-7-H9]">
      <seq>gtcaaccccaacctcacgcccaggactggaaatctggatactggacaatttaataaggggtcgaatatcaggaaacaagaattgggatggtctgataccatgtaagaaactcaaccccaaaaaggctagctcaagtggggagggttgcacaagaccagataaggagagattcttcaagagagatgttgaagagaacaaagtagagagtataaagagggacaaggcagcaacagaaaaattgcttcatgaaacagtcgaaaaacatcaagcagaacttgcaactcaaaaagaatactatactaatgctttaaatgctgcaaaagaagcagaagctttatctgaggcacgggctaacaatgaagctagaactcaactagagggtcgtctcagagaggctgaagaccgtgaagcaatgcttgttcaggcacttgaagaattaaggcaaacacttaccagaacggagcagcaggcagtttttaaagaagatatgctccgcagagaaattgaagatctccagaaaagataccaagccagtgaacgtcgatgtgaggagttgataacacaagttcccgaatctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="52937" stop="51367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52637" g_stop="52454" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52453" i_stop="52222" i_length="232">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52221" g_stop="51937" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="469" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51936" i_stop="51860" i_length="77">
            <donor d_prob="0.683" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51859" g_stop="51800" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="529" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51799" i_stop="51718" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51717" g_stop="51667" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="580" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E331851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52637" e_stop="52454"/>
          <exon e_start="52221" e_stop="51937"/>
          <exon e_start="51859" e_stop="51800"/>
          <exon e_start="51717" e_stop="51667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAACCCCAACCTCACGCCCAGGACTGGAAATCTGGATACTGGACAATTTAATAAGGGGTCGAATATCAGGAAACAAGAATTGGGATGGTCTGATACCATGTAAGAAACTCAACCCCAAAAAGGCTAGCTCAAGTGGGGAGGGTTGCACAAGACCAGATAAGGAGAGATTCTTCAAGAGAGATGTTTGTATTTTTACTTCAATGTACCCTCATTGGTTTCTTGAGTTGTTAAAAGAACTTTATAGCTCTTCTTAGACAGTTTATATAGTCTCGTCACCTAGCACTTCTTTTCATGAAGTAAAGGATTGTCACTTAACTAGTGTTTAGTTGAGTTGATTGCTTTATGTTTCTTTTTTTTTTTGTGGGATTATGGTAGAAATTATGATTTTAACTTACATGCTTATGCCTTCCCTAGGTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAGGTTTATATTCTTGAATAGTGTCTTATCGGGGTTCATCAATCTAATTTCGCAGGGCCTAACATTTTTTTCACCTGCAGGCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAAGTATAACTTTCTCTTTTGCAACTTTTTGTGCTTGACTACTTAATCATGTTTCCTTTACATATACTTATTCTTCTGTGTTTAGGCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACC</genome_strand>
        <mrna_strand>GTCAACCCCAACCTCACGCCCAGGACTGGAAATCTGGATACTGGACAATTTAATAAGGGGTCGAATATCAGGAAACAAGAATTGGGATGGTCTGATACCATGTAAGAAACTCAACCCCAAAAAGGCTAGCTCAAGTGGGGAGGGTTGCACAAGACCAGATAAGGAGAGATTCTTCAAGAGAGAT........................................................................................................................................................................................................................................GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG.............................................................................GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA..................................................................................GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E444173" ref_strand="+" ref_description="SGN-E444173 [cSTA-41-N6]">
      <seq>tgagaggaaggtttatgctctcaccaaagaaagggatacacttcgcagggaacataataagaagagtgatgctgcagctcttctcaaagagaaggatgagataattactcaagtaatggctgaaggtgagcagctttctaaaaagcaggctgcccaagaagctcagatgagaaagttaagggcacagatcagagagcttgaagaagagaagaaaggattacataccaagcttgaggttgaagagaacaaagtagagagtataaagagggacaaggcagcaacagaaaagttgcttcatgaaacagtagaaaaacatcaagcagaacttgcaactcaaaaagaatactatactaatgctttaaatgccacaaaagaagcagaagctttatctgaggcacgggctaacaatgaagctagaactcaactagagggttgtctcagagaggctgaagaccgtcaagcaatgcttgttcaggcacttgaagaattaaggcaaacacttaccagaacggagcagcaggcagtttttaaagaagatatgctgcgcagagaaattgaggacctccagaaaagataccaagccagtgaacgtcgatgtgaggagttgataacacaagttcccgaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="55875" stop="51369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55573" g_stop="55459" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="125" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55458" i_stop="54405" i_length="1054">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54404" g_stop="54343" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="187" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54342" i_stop="54258" i_length="85">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54257" g_stop="54210" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="235" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54209" i_stop="52222" i_length="1988">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52221" g_stop="51937" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="520" r_length="285" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51936" i_stop="51860" i_length="77">
            <donor d_prob="0.683" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51859" g_stop="51800" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="580" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51799" i_stop="51718" i_length="82">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51717" g_stop="51669" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="629" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E444173" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55573" e_stop="55459"/>
          <exon e_start="54404" e_stop="54343"/>
          <exon e_start="54257" e_stop="54210"/>
          <exon e_start="52221" e_stop="51937"/>
          <exon e_start="51859" e_stop="51800"/>
          <exon e_start="51717" e_stop="51669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAGGTATGACAAACTCAACTCTGGCTCTAACTGTGATTTTAATACATTACACCGTCATTATGCCTTTGTTTCATGTGAAGCTTTCCTACTATATGTGACATATAAGATAATTATACAGTTAAGGACAAGATACATTTTCATTAATCTTAGGTGATATTTTTGTTTCTAACTAGACGAAAACTTAGATATCATACTTGTGCTAGAGCGTCGGTCATACTTGCTGATCAACCAAAAAAGGGGCAGGTCATACCTGCGGCAATTATGTATGTATAGGTGGCAAATGGGCGGGTTGGGCTGAATTTGGGCTCGTCAAAATAGGCTGAGCTAATAAATAGCGGGTATTGACCCACCCAAAGTCACTTGGGCTGAAATGTGCAAAAATGCGGGTTATAACCCAACTTGCCGAACTCTTATTAAGTTTTAATTGCTTGATTTGTTCTTTTTAAATTTTTTATACCTTATAAAATTATTGTATTTCTTTTTTATGACCATATTAATATAATATATCAAATAAAATAAAACATCCTTTTAAAAATATTTTGACAAGATTTCCAATGGATCAATTTGGGCTAGACATCAGTCCAAAGTTTGATGGGCTGAAATGAGCTGAGCTAATAAATGAGCGGGTCAATAATTTTGCCATCTCTATATGTATTTCATTAGGGAAATAAATTCAAGATGGGTCGAAATGCCTGTTTGGGTGTGGTCTGATGATTGGACATTCTAAAAAGTAGTCAAGTCCTTAAGTATGGGTTCTATGGAAGAACTCAAGTTTTTGCATGCTGGAAGTTGCATCATATCAGAACTTTTGTGAGGAACTTCTTACTATTTTGTGCTGCTGCGACTGTACCTTTGGCTAGAGTGTCTTTTTCTTTTTATTGGTAACCTTTGACTAGAGTCTCTTTACACAATTTAGTTCCTGTTGACATGTATATCAGACTATTTGGAGAAATATTTTTATTCTTTTCAATTTTGTATAAGCTCTATATTCAACAAGATACATTATCTTGGGTTCTTTTTATGCCATTTCAATTTCTAAAACCCAGTTTTTCTCCAGGTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAGGTGTGTAATCAGGCATACTCATTATTCCATTTCAGAAAGCATATTTATTAGTTTTAACAAATCTTCCATTTGTTTTGAAAGTTAGATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAGGTCAGTCATTTCTAATTGATGCAACAACTTGATTGTAGATATTGTGAGGGGTGACAAGAGGTGCCTGGATTACTTTCAACTCTCTCCTATTATGGTTAATATGTTCTTTTATTATGTTAAAATGTCGACTGCCTTGTATTCATTTTCACGAAAATGTTATTCTTAGAGTTTTCAGCTATAAGTTGCTCTTGGTTTTAGCATGCATACTACAACAATTTGGGAGTAGAAATTTTCTAAAACTAACCGTAGCTGCAGTTGAAGTTCATCTGAGAAGGGGAGAAGTGTTCAAAATCTGTTTGGTGTGAAGGAACATATTTGTGGAAGATAAATCACTTTTTAGGGTTTTGTTGCCAAATAATGTTTTCCATCAAATGGGGGAGAACGTCTTCTGTTACACATGTATGGAAGTTATTTTCGTTACAGTTACCACAACTTCTAACTTCATATCACTGCTCTGACAAACATTTAGACATTATAATAAATCTTTATACTGTGTTACCTTTGTTAAAAGTATAAATAAAAATAAATCTTTATACTTAAAAAATTTCATCAACATACTATACAATGTGCTAACATTATTATTAACTCTTGATAAATGTCTTTTTTTTAAGAAACTATATTCTACGCACCAATGAACCACTGGGAAGCATTTTTCATAGAAGATATTTATCAGAAAATGACTTCATCTACATCGTACCAAACACATATAGTATTTTTTGATAGTTCTGCCTGGATAACTTGAGTCCACTTCAGAAAGATATTTTTTTCACCTGGTCTTTGTTCTAAGTAGGTATCCTTTTGTCTTGGAAGTTGCCTTTTTGCTGACCGCTTTAGTAGAATCAAGCAAGATGAGCCCAACTTTCGAAGGAATACCCTTAAGGAAATTTAGTAACTTGTAATTTTACTGCAATTTCCCCTCCTTGAGTTCTTGAGTTGTTCAAGGAACTGTAGGGTTTGTAAAATAAATCTTGGGTAGTGTTGAAGGAGTGGAATAGTAGGAATATTGAAGATATATCTAATTCCATTCACAAGGTTAAATGGAATTGCATTGTATCTCTACATTTTTGGTGTAAAGAGATAGGATTAGAGGATTCAGATCAACTTTTAGAATTTTTAGGATCCTTGTAAGTATTCTGTTTTTTGTTCTTCTCTGATTTTCTAAAGGTCCCCAGCATAACCTTTTTTATTTAAAAAAAATTTAAGCCATCACCATTACAACTTAAAGCTATTAGGTGTGGGGTTTGGCTTGACCCTACCATGTCTATAGTTTCCAACATAAATTACACAAAAACAGAGGGAGGATTTACCTAACCTCTGGCAAAAATAGAAAGTGGAAATTAGGACATCAAAAAATGGAATGCAACAAACTTATAACCTTCCACTCAAGCAAAATACAAGATTCAACTAATAAAAAAATTACATTTGTCATATCTTTTTTTTATACAAGGTAGTATGTGTTACCTACCTATTCTCAAAAAAAAAAAAAAAAGAATCTTGGGGCTAACTCAATCCCAAACGTCCCAAGACCATATAAGGAGACTAGCCATTTCTTTTTCGTCTGAGGTGGGACTCGTCAACCCCAACCTCACGCCCAGGACTGGAAATCTGGATACTGGACAATTTAATAAGGGGTCGAATATCAGGAAACAAGAATTGGGATGGTCTGATACCATGTAAGAAACTCAACCCCAAAAAGGCTAGCTCAAGTGGGGAGGGTTGCACAAGACCAGATAAGGAGAGATTCTTCAAGAGAGATGTTTGTATTTTTACTTCAATGTACCCTCATTGGTTTCTTGAGTTGTTAAAAGAACTTTATAGCTCTTCTTAGACAGTTTATATAGTCTCGTCACCTAGCACTTCTTTTCATGAAGTAAAGGATTGTCACTTAACTAGTGTTTAGTTGAGTTGATTGCTTTATGTTTCTTTTTTTTTTTGTGGGATTATGGTAGAAATTATGATTTTAACTTACATGCTTATGCCTTCCCTAGGTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAGGTTTATATTCTTGAATAGTGTCTTATCGGGGTTCATCAATCTAATTTCGCAGGGCCTAACATTTTTTTCACCTGCAGGCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAAGTATAACTTTCTCTTTTGCAACTTTTTGTGCTTGACTACTTAATCATGTTTCCTTTACATATACTTATTCTTCTGTGTTTAGGCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTA</genome_strand>
        <mrna_strand>GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAGCTTTCTAAAAAGCAGGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG.....................................................................................ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAGTTGCTTCATGAAACAGTAGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCCACAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTTGTCTCAGAGAGGCTGAAGACCGTCAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG.............................................................................GCAGTTTTTAAAGAAGATATGCTGCGCAGAGAAATTGAGGACCTCCAGAAAAGATACCAA..................................................................................GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E212013" ref_strand="+" ref_description="SGN-E212013 [cLEC-66-P21]">
      <seq>agggatacacttcgcagggaacataataagaagagtgatgctgcagctcttctcaaagagaaggatgagataattactcaagtaatggctgaaggtgagcagctttctaaaaagcaagctgcccaagaagctcagatgagaaagttaagggcacagatcagagagcttgaagaagagaagaaaggattacataccaagcttgaggttgaagagaacaaagtagagagtataaagagggacaaggcagcaacagaaaaattgcttcatgaaacagtcgaaaaacatcaagcagaacttgcaactcaaaaagaatactatactaatgctttaaatgctgcaaaagaagcagaagctttatctgaggcacgggctaacaatgaagctagaactcaactagagggtcgtctcagagaggctgaagaccgtgaagcaatgcttgttcaggcacttgaagaattaaggcaaacacttaccagaacggagcagcaggcagtttttaaagaagatatgctccgcagagaaattgaagatctccagaaaagataccaagccagtgaacgtcgatgtgaggagttgataacacaagttcccgaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="55852" stop="51369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55552" g_stop="55459" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55458" i_stop="54405" i_length="1054">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54404" g_stop="54343" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="156" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54342" i_stop="54258" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54257" g_stop="54210" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="204" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54209" i_stop="52222" i_length="1988">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52221" g_stop="51937" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="489" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51936" i_stop="51860" i_length="77">
            <donor d_prob="0.683" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51859" g_stop="51800" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="549" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51799" i_stop="51718" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51717" g_stop="51669" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="598" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E212013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55552" e_stop="55459"/>
          <exon e_start="54404" e_stop="54343"/>
          <exon e_start="54257" e_stop="54210"/>
          <exon e_start="52221" e_stop="51937"/>
          <exon e_start="51859" e_stop="51800"/>
          <exon e_start="51717" e_stop="51669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAGGTATGACAAACTCAACTCTGGCTCTAACTGTGATTTTAATACATTACACCGTCATTATGCCTTTGTTTCATGTGAAGCTTTCCTACTATATGTGACATATAAGATAATTATACAGTTAAGGACAAGATACATTTTCATTAATCTTAGGTGATATTTTTGTTTCTAACTAGACGAAAACTTAGATATCATACTTGTGCTAGAGCGTCGGTCATACTTGCTGATCAACCAAAAAAGGGGCAGGTCATACCTGCGGCAATTATGTATGTATAGGTGGCAAATGGGCGGGTTGGGCTGAATTTGGGCTCGTCAAAATAGGCTGAGCTAATAAATAGCGGGTATTGACCCACCCAAAGTCACTTGGGCTGAAATGTGCAAAAATGCGGGTTATAACCCAACTTGCCGAACTCTTATTAAGTTTTAATTGCTTGATTTGTTCTTTTTAAATTTTTTATACCTTATAAAATTATTGTATTTCTTTTTTATGACCATATTAATATAATATATCAAATAAAATAAAACATCCTTTTAAAAATATTTTGACAAGATTTCCAATGGATCAATTTGGGCTAGACATCAGTCCAAAGTTTGATGGGCTGAAATGAGCTGAGCTAATAAATGAGCGGGTCAATAATTTTGCCATCTCTATATGTATTTCATTAGGGAAATAAATTCAAGATGGGTCGAAATGCCTGTTTGGGTGTGGTCTGATGATTGGACATTCTAAAAAGTAGTCAAGTCCTTAAGTATGGGTTCTATGGAAGAACTCAAGTTTTTGCATGCTGGAAGTTGCATCATATCAGAACTTTTGTGAGGAACTTCTTACTATTTTGTGCTGCTGCGACTGTACCTTTGGCTAGAGTGTCTTTTTCTTTTTATTGGTAACCTTTGACTAGAGTCTCTTTACACAATTTAGTTCCTGTTGACATGTATATCAGACTATTTGGAGAAATATTTTTATTCTTTTCAATTTTGTATAAGCTCTATATTCAACAAGATACATTATCTTGGGTTCTTTTTATGCCATTTCAATTTCTAAAACCCAGTTTTTCTCCAGGTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAGGTGTGTAATCAGGCATACTCATTATTCCATTTCAGAAAGCATATTTATTAGTTTTAACAAATCTTCCATTTGTTTTGAAAGTTAGATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAGGTCAGTCATTTCTAATTGATGCAACAACTTGATTGTAGATATTGTGAGGGGTGACAAGAGGTGCCTGGATTACTTTCAACTCTCTCCTATTATGGTTAATATGTTCTTTTATTATGTTAAAATGTCGACTGCCTTGTATTCATTTTCACGAAAATGTTATTCTTAGAGTTTTCAGCTATAAGTTGCTCTTGGTTTTAGCATGCATACTACAACAATTTGGGAGTAGAAATTTTCTAAAACTAACCGTAGCTGCAGTTGAAGTTCATCTGAGAAGGGGAGAAGTGTTCAAAATCTGTTTGGTGTGAAGGAACATATTTGTGGAAGATAAATCACTTTTTAGGGTTTTGTTGCCAAATAATGTTTTCCATCAAATGGGGGAGAACGTCTTCTGTTACACATGTATGGAAGTTATTTTCGTTACAGTTACCACAACTTCTAACTTCATATCACTGCTCTGACAAACATTTAGACATTATAATAAATCTTTATACTGTGTTACCTTTGTTAAAAGTATAAATAAAAATAAATCTTTATACTTAAAAAATTTCATCAACATACTATACAATGTGCTAACATTATTATTAACTCTTGATAAATGTCTTTTTTTTAAGAAACTATATTCTACGCACCAATGAACCACTGGGAAGCATTTTTCATAGAAGATATTTATCAGAAAATGACTTCATCTACATCGTACCAAACACATATAGTATTTTTTGATAGTTCTGCCTGGATAACTTGAGTCCACTTCAGAAAGATATTTTTTTCACCTGGTCTTTGTTCTAAGTAGGTATCCTTTTGTCTTGGAAGTTGCCTTTTTGCTGACCGCTTTAGTAGAATCAAGCAAGATGAGCCCAACTTTCGAAGGAATACCCTTAAGGAAATTTAGTAACTTGTAATTTTACTGCAATTTCCCCTCCTTGAGTTCTTGAGTTGTTCAAGGAACTGTAGGGTTTGTAAAATAAATCTTGGGTAGTGTTGAAGGAGTGGAATAGTAGGAATATTGAAGATATATCTAATTCCATTCACAAGGTTAAATGGAATTGCATTGTATCTCTACATTTTTGGTGTAAAGAGATAGGATTAGAGGATTCAGATCAACTTTTAGAATTTTTAGGATCCTTGTAAGTATTCTGTTTTTTGTTCTTCTCTGATTTTCTAAAGGTCCCCAGCATAACCTTTTTTATTTAAAAAAAATTTAAGCCATCACCATTACAACTTAAAGCTATTAGGTGTGGGGTTTGGCTTGACCCTACCATGTCTATAGTTTCCAACATAAATTACACAAAAACAGAGGGAGGATTTACCTAACCTCTGGCAAAAATAGAAAGTGGAAATTAGGACATCAAAAAATGGAATGCAACAAACTTATAACCTTCCACTCAAGCAAAATACAAGATTCAACTAATAAAAAAATTACATTTGTCATATCTTTTTTTTATACAAGGTAGTATGTGTTACCTACCTATTCTCAAAAAAAAAAAAAAAAGAATCTTGGGGCTAACTCAATCCCAAACGTCCCAAGACCATATAAGGAGACTAGCCATTTCTTTTTCGTCTGAGGTGGGACTCGTCAACCCCAACCTCACGCCCAGGACTGGAAATCTGGATACTGGACAATTTAATAAGGGGTCGAATATCAGGAAACAAGAATTGGGATGGTCTGATACCATGTAAGAAACTCAACCCCAAAAAGGCTAGCTCAAGTGGGGAGGGTTGCACAAGACCAGATAAGGAGAGATTCTTCAAGAGAGATGTTTGTATTTTTACTTCAATGTACCCTCATTGGTTTCTTGAGTTGTTAAAAGAACTTTATAGCTCTTCTTAGACAGTTTATATAGTCTCGTCACCTAGCACTTCTTTTCATGAAGTAAAGGATTGTCACTTAACTAGTGTTTAGTTGAGTTGATTGCTTTATGTTTCTTTTTTTTTTTGTGGGATTATGGTAGAAATTATGATTTTAACTTACATGCTTATGCCTTCCCTAGGTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAGGTTTATATTCTTGAATAGTGTCTTATCGGGGTTCATCAATCTAATTTCGCAGGGCCTAACATTTTTTTCACCTGCAGGCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAAGTATAACTTTCTCTTTTGCAACTTTTTGTGCTTGACTACTTAATCATGTTTCCTTTACATATACTTATTCTTCTGTGTTTAGGCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTA</genome_strand>
        <mrna_strand>AGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG.....................................................................................ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG.............................................................................GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA..................................................................................GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E604724" ref_strand="+" ref_description="SGN-E604724 [74862]">
      <seq>ctggtgtgaaagaacggttgagctccggaagcaactcttcagatgttaccaattcagtggttgaactggagaagctgaaaaaggaaatgaaaatgatggaaactgcattacaaggagctgctagacaagctcaggctaaagctgatgaacttgcgaagttgatgaatgagaatgagcaattgaaggctgttactgaggatctgagaaggaagtccagtgatgcagaaattgaatctctgcgagaagagtaccatcaaaaagtttctgctcttgagaggaaggtttatgctctcaccaaagaaagggatacacttcgcagggaacataataagaagagtgatgctgcagctcttctcaaagagaaggatgagataattactcaagtaatggctgaaggtgagcagctttctaaaaagcaggctgcccaagaagctcagatgagaaagttaagggcacagatcagagagcttgaagaagagaagaaaggattacataccaagcttgaggttgaagagaacaaagtagagagtataaagagggacaaggcagcaacagaaaagttgcttcatgaaacagtagaaaaacatcaagcagaacttgcanatcaaaacagaatactatactgatgctttaaatgccgcaaaagaagcagaagctttatctgaggcacgggctaacatgaagctagaactcaactagagggtcgtctcagagaggctgaagaccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="59328" stop="51700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59028" g_stop="58895" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58894" i_stop="57995" i_length="900">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57994" g_stop="57923" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="206" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57922" i_stop="56758" i_length="1165">
            <donor d_prob="0.654" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56757" g_stop="56683" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="281" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56682" i_stop="55574" i_length="1109">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55573" g_stop="55459" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="396" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55458" i_stop="54405" i_length="1054">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54404" g_stop="54343" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="458" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54342" i_stop="54258" i_length="85">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54257" g_stop="54210" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="506" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54209" i_stop="52222" i_length="1988">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52221" g_stop="52000" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="728" r_length="222" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E604724" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59028" e_stop="58895"/>
          <exon e_start="57994" e_stop="57923"/>
          <exon e_start="56757" e_stop="56683"/>
          <exon e_start="55573" e_stop="55459"/>
          <exon e_start="54404" e_stop="54343"/>
          <exon e_start="54257" e_stop="54210"/>
          <exon e_start="52221" e_stop="52000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAGGTATGTCCATATGCTACTTTAATGGAAATTTATGCACCTTCTGCTCCTCAGCATCAGTGGAACATTTCTGAATCTACTGACGTTACTTGAGAATATGAATCTTTTGTTGTATGCACCTATAGTAGGCGAGTCCAATAATTCACGTTGTATTACCTAAGATTAGCTGAAATCTGAATCCCACTCATCCTCAATAATTTCTCCCAACTTGTGTGGTCATGGATAAAAGTTGCTTCAATGAGTTGATTTTGACTAAAAGTAGCTTCAATTAAAGAAGTTCTGATTTGAAGTGTGTGTGTCATTGACACATCCCATTGATATTGTCTTGTACTTCTCAAATGACATAGTTTACGTTCTTGAGGTCTCAAATGTCTGAACACATGGATATCTTTTCCATAGTCCGTGGATCCTTTCTGAAGTTGTGGAATCCGTTGGCAAGGATGTTGGTATACGCCTAAAGATGATTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCATTATTCCAAAGCCAATAAATATATTTAAGGATTCTGGGTGATTGGAACTAATTCTCCCATCATGTATGAACTTCGCAATATCTTCCTGTTATGCCTCAAACTTAGAGGGAAGCTTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCAAGATTATTCCAAAGACAATAAATATATTTAAGGATTTTGGGTGATTGGAACTAATTTCTTCCATTATGTATGAACTTCTCAATATCTTCCTGTCATGCCACAAACTTGAAAAAAAATTCAGTTGGTGTGTTAGACCCCTTATTTTCAGTTCTTGTTTATAAAATGATGAACACTCAACAAGATGACATGTCATTGTTTTTCCTCAGGCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGAGTAAGTTCTCATCATTTTGAAGTTCCTTTCGAGGCTGTTAATTCAATTTGTTGCTGTCCGCTAGTTTTTGAAATGGCATGAGTCAAAGACATACTATAGTTCCCATTGTTTCAGGATGAATTTACCATCTCATAAATTAGATTTCTAGTGTTGTTTTTCTGCTTGTTATTGCAGAACATTTCTTTCTCTTCTGCCCTTGCTTGCAATTTTCTTCTAGATAAGTTAATCTTGCATGTGAGCCAGATATTGTGTAAGCTTCTGTGCTGACTGGTCGAGTCATCTTAACTACCACCTAATTTGTTAAGCACTTTTTAATGAACATCATCAATAATCAGACTTCTCTTGACTAGATGCGTGTAGATCAGGAAGAATCGCTTCTGTTGCATAATTTCATATGACTCTCATCATTGATGATTTTGATTTAACTGCTTTCACATCAATACACGTTGCATTTTCTCTTATACAAATTCTAGCTTCTGTCCTGTTTGTTAGATGACTTGTGCTTCGTATGCTCTTCTATTCTCTCAGAACTGCTAGTTTCCTGTATCAATTTAAGTACAGAATGTTTCGGGGTGGCCCAGTGGTTTGGGCTTGGAATTTTTATGTTGGAGGTCTCAAGTGCGAAACCTCTTGCCAGCGAAAGCAAGGGGTTTGCCTTCAGGGTTGAGCTCGTCGCACCGGGCTTGGCTAGTGCGGGTTACCTCTCCTATGTTGTTTGCGAGCTATTGCATGTGGGTGGGGGTGGGGGGTGGGGGTGGGGGTTTACCCTGTGCGCACCTAAAGGATAGTGGCTGTGAGTTTCCCTTGTCATAAAAAAAAAAAGTTATCCCTGCAAGCAATTATTCTGTTGTTCATTTTATCTTCCTTTAGTATTAATATCATATGTGTAATTGGATCTTTATTGCTGCTGGGTGGGATCAGCGTAGCACGTGCCAATGGATGTGTGTTTTGTAATGGATAATGGATCGAAACTTTAGTTAACTCTTTTGTTAATTTTATTTAAATTGGTGAGTTCCAATGCACTTTTTAAAACTTTTTTCTAATTCCCCATCCCCACAGCGTTCCTCTTATGTGTACGTTAGGTTCATCTTTCATCCCTCATAATTCCCTTCTAAGTGAAACTCCACCAATATTATATCTCTTGCTTACACACTAATTTTTACAGAGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAGGTATGAATGTGTTCACATGAATGTTTCAGCTTAAACTTCCATTGCTAAGTGCTTGCTTTATGTCTTGATCATCAGCCTTTTCACATCATAACAGTAGCATAAATTCTTGAAAGACAGTTTATTTGAGCTTTCACATTGTTGCATAGTTTTTCTACTTCATTTAGGCATCACTACAATGTGCAGCTTCAGCTTTTATGTGTATAACTTCATATTTTATGCTTGCTGGTTCTGTATAACGCTTGATGGTTTCTTACACTTTTAGTTTTTCAATGGTTCTAATAGACTCTAAGGATGCAGGATTATCTTGTTGAGCTGTAATGGGTCGAACCCCTTTAGTGTCAATAAGACCTTATTAACTACATATATGAATTGGGACGGGGAGCTTGACCCTCGAAAATCTGTATACTTCCACAGGAGAACATTCTTTGGAGAAACTCCATACCCTTCTTTTAGAGTTCTTGCTCTTGTAAAAAAAAGTAGAAGCATCTTTTATATGCTGCACATACATGATATTGACAGAAGAAGAGAAACATTCTGTGTTGGCTGGTAATATTCCATCTTTTCCGATTTCATTAAATTTTTTGAAGAAATTGCACCATCCTTCCCGCATCTCTATTTACTGCTGAAACCTCATGTCTACTACTTCCTAAAATTGCAGTTCCCCAGTTTGTTTTTTTAAAGAAAATCCTCCTGTACTATCAGTCATTGAGGGCTCTTCTAAACAAGAAATTCCATCCCTGAGGGCTCCACATCTGAGAAATTGTATCCTTGTTCTGCTAGCTTAGCATAACCAAATTTGGAAATAGAGTTGCACAGCATTCTTCTCTAATTAGTTGTTATGTTCTCCTTCATTTCCTTGTGTCCTTTTTCAAACAACTTTGAAATGCTATACTTGAGCCGAGTTCAATTAGAAACAAATTATCTTATCTCCACGAGGTAGGGGTAAAGTTTGCATACACCCCACGTACACCCCTCCCTAGATCCCACCTCCACTGATGGATTACACTCACTGGGTTTGTTGTTGTCGTATTAAAGGGGAAAATGAAATGTGTCCTAACATTCTAGTAAATGTGTTGTGAATAATATTTTTTAATACTCATTCTTTTCAGGTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAGGTATGACAAACTCAACTCTGGCTCTAACTGTGATTTTAATACATTACACCGTCATTATGCCTTTGTTTCATGTGAAGCTTTCCTACTATATGTGACATATAAGATAATTATACAGTTAAGGACAAGATACATTTTCATTAATCTTAGGTGATATTTTTGTTTCTAACTAGACGAAAACTTAGATATCATACTTGTGCTAGAGCGTCGGTCATACTTGCTGATCAACCAAAAAAGGGGCAGGTCATACCTGCGGCAATTATGTATGTATAGGTGGCAAATGGGCGGGTTGGGCTGAATTTGGGCTCGTCAAAATAGGCTGAGCTAATAAATAGCGGGTATTGACCCACCCAAAGTCACTTGGGCTGAAATGTGCAAAAATGCGGGTTATAACCCAACTTGCCGAACTCTTATTAAGTTTTAATTGCTTGATTTGTTCTTTTTAAATTTTTTATACCTTATAAAATTATTGTATTTCTTTTTTATGACCATATTAATATAATATATCAAATAAAATAAAACATCCTTTTAAAAATATTTTGACAAGATTTCCAATGGATCAATTTGGGCTAGACATCAGTCCAAAGTTTGATGGGCTGAAATGAGCTGAGCTAATAAATGAGCGGGTCAATAATTTTGCCATCTCTATATGTATTTCATTAGGGAAATAAATTCAAGATGGGTCGAAATGCCTGTTTGGGTGTGGTCTGATGATTGGACATTCTAAAAAGTAGTCAAGTCCTTAAGTATGGGTTCTATGGAAGAACTCAAGTTTTTGCATGCTGGAAGTTGCATCATATCAGAACTTTTGTGAGGAACTTCTTACTATTTTGTGCTGCTGCGACTGTACCTTTGGCTAGAGTGTCTTTTTCTTTTTATTGGTAACCTTTGACTAGAGTCTCTTTACACAATTTAGTTCCTGTTGACATGTATATCAGACTATTTGGAGAAATATTTTTATTCTTTTCAATTTTGTATAAGCTCTATATTCAACAAGATACATTATCTTGGGTTCTTTTTATGCCATTTCAATTTCTAAAACCCAGTTTTTCTCCAGGTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAGGTGTGTAATCAGGCATACTCATTATTCCATTTCAGAAAGCATATTTATTAGTTTTAACAAATCTTCCATTTGTTTTGAAAGTTAGATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAGGTCAGTCATTTCTAATTGATGCAACAACTTGATTGTAGATATTGTGAGGGGTGACAAGAGGTGCCTGGATTACTTTCAACTCTCTCCTATTATGGTTAATATGTTCTTTTATTATGTTAAAATGTCGACTGCCTTGTATTCATTTTCACGAAAATGTTATTCTTAGAGTTTTCAGCTATAAGTTGCTCTTGGTTTTAGCATGCATACTACAACAATTTGGGAGTAGAAATTTTCTAAAACTAACCGTAGCTGCAGTTGAAGTTCATCTGAGAAGGGGAGAAGTGTTCAAAATCTGTTTGGTGTGAAGGAACATATTTGTGGAAGATAAATCACTTTTTAGGGTTTTGTTGCCAAATAATGTTTTCCATCAAATGGGGGAGAACGTCTTCTGTTACACATGTATGGAAGTTATTTTCGTTACAGTTACCACAACTTCTAACTTCATATCACTGCTCTGACAAACATTTAGACATTATAATAAATCTTTATACTGTGTTACCTTTGTTAAAAGTATAAATAAAAATAAATCTTTATACTTAAAAAATTTCATCAACATACTATACAATGTGCTAACATTATTATTAACTCTTGATAAATGTCTTTTTTTTAAGAAACTATATTCTACGCACCAATGAACCACTGGGAAGCATTTTTCATAGAAGATATTTATCAGAAAATGACTTCATCTACATCGTACCAAACACATATAGTATTTTTTGATAGTTCTGCCTGGATAACTTGAGTCCACTTCAGAAAGATATTTTTTTCACCTGGTCTTTGTTCTAAGTAGGTATCCTTTTGTCTTGGAAGTTGCCTTTTTGCTGACCGCTTTAGTAGAATCAAGCAAGATGAGCCCAACTTTCGAAGGAATACCCTTAAGGAAATTTAGTAACTTGTAATTTTACTGCAATTTCCCCTCCTTGAGTTCTTGAGTTGTTCAAGGAACTGTAGGGTTTGTAAAATAAATCTTGGGTAGTGTTGAAGGAGTGGAATAGTAGGAATATTGAAGATATATCTAATTCCATTCACAAGGTTAAATGGAATTGCATTGTATCTCTACATTTTTGGTGTAAAGAGATAGGATTAGAGGATTCAGATCAACTTTTAGAATTTTTAGGATCCTTGTAAGTATTCTGTTTTTTGTTCTTCTCTGATTTTCTAAAGGTCCCCAGCATAACCTTTTTTATTTAAAAAAAATTTAAGCCATCACCATTACAACTTAAAGCTATTAGGTGTGGGGTTTGGCTTGACCCTACCATGTCTATAGTTTCCAACATAAATTACACAAAAACAGAGGGAGGATTTACCTAACCTCTGGCAAAAATAGAAAGTGGAAATTAGGACATCAAAAAATGGAATGCAACAAACTTATAACCTTCCACTCAAGCAAAATACAAGATTCAACTAATAAAAAAATTACATTTGTCATATCTTTTTTTTATACAAGGTAGTATGTGTTACCTACCTATTCTCAAAAAAAAAAAAAAAAGAATCTTGGGGCTAACTCAATCCCAAACGTCCCAAGACCATATAAGGAGACTAGCCATTTCTTTTTCGTCTGAGGTGGGACTCGTCAACCCCAACCTCACGCCCAGGACTGGAAATCTGGATACTGGACAATTTAATAAGGGGTCGAATATCAGGAAACAAGAATTGGGATGGTCTGATACCATGTAAGAAACTCAACCCCAAAAAGGCTAGCTCAAGTGGGGAGGGTTGCACAAGACCAGATAAGGAGAGATTCTTCAAGAGAGATGTTTGTATTTTTACTTCAATGTACCCTCATTGGTTTCTTGAGTTGTTAAAAGAACTTTATAGCTCTTCTTAGACAGTTTATATAGTCTCGTCACCTAGCACTTCTTTTCATGAAGTAAAGGATTGTCACTTAACTAGTGTTTAGTTGAGTTGATTGCTTTATGTTTCTTTTTTTTTTTGTGGGATTATGGTAGAAATTATGATTTTAACTTACATGCTTATGCCTTCCCTAGGTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAA-AGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGT</genome_strand>
        <mrna_strand>CTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAAGCTGATGAACTTGCGAAGTTGATGAATGAGAATGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGTCCAGTGATGCAGAAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAGCTTTCTAAAAAGCAGGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG.....................................................................................ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAGTTGCTTCATGAAACAGTAGAAAAACATCAAGCAGAACTTGCANATCAAAACAGAATACTATACTGATGCTTTAAATGCCGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAAC-ATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E313199" ref_strand="+" ref_description="SGN-E313199 [cTOA-18-N9]">
      <seq>gcatttcatccaacattggaatggctctttattggagtaccatcaaaaagtttctgctcttgagaggaaggtttatgctctcaccaaagaaagggatacacttcgcagggaacataataagaagagtgatgctgcagctcttctcaaagagaaggatgagataattactcaagtaatggctgaaggtgggcagctttctaaaaagcaagctgcccaagaagctcagatgagaaagttaagggcacagatcagagagcttgaagaagagaagaaaggattacataccaagcttgaggttgaagagaacaaagtagagagtataaagagggacaaggcagcaacagaaaaattgcttcatgaaacagtcgaaaaacatcaagcagaacttgcaactcaaaaagaatactatactaatgctttaaatgctgcaaaagaagcagaagctttatctgaggcacgggctaacaatgaagctagaactcaactagagggtcgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="57018" stop="51718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56717" g_stop="56683" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="70" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56682" i_stop="55574" i_length="1109">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55573" g_stop="55459" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="185" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55458" i_stop="54405" i_length="1054">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54404" g_stop="54343" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="247" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54342" i_stop="54258" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54257" g_stop="54210" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="295" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54209" i_stop="52222" i_length="1988">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52221" g_stop="52018" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="499" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E313199" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56717" e_stop="56683"/>
          <exon e_start="55573" e_stop="55459"/>
          <exon e_start="54404" e_stop="54343"/>
          <exon e_start="54257" e_stop="54210"/>
          <exon e_start="52221" e_stop="52018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAGGTATGAATGTGTTCACATGAATGTTTCAGCTTAAACTTCCATTGCTAAGTGCTTGCTTTATGTCTTGATCATCAGCCTTTTCACATCATAACAGTAGCATAAATTCTTGAAAGACAGTTTATTTGAGCTTTCACATTGTTGCATAGTTTTTCTACTTCATTTAGGCATCACTACAATGTGCAGCTTCAGCTTTTATGTGTATAACTTCATATTTTATGCTTGCTGGTTCTGTATAACGCTTGATGGTTTCTTACACTTTTAGTTTTTCAATGGTTCTAATAGACTCTAAGGATGCAGGATTATCTTGTTGAGCTGTAATGGGTCGAACCCCTTTAGTGTCAATAAGACCTTATTAACTACATATATGAATTGGGACGGGGAGCTTGACCCTCGAAAATCTGTATACTTCCACAGGAGAACATTCTTTGGAGAAACTCCATACCCTTCTTTTAGAGTTCTTGCTCTTGTAAAAAAAAGTAGAAGCATCTTTTATATGCTGCACATACATGATATTGACAGAAGAAGAGAAACATTCTGTGTTGGCTGGTAATATTCCATCTTTTCCGATTTCATTAAATTTTTTGAAGAAATTGCACCATCCTTCCCGCATCTCTATTTACTGCTGAAACCTCATGTCTACTACTTCCTAAAATTGCAGTTCCCCAGTTTGTTTTTTTAAAGAAAATCCTCCTGTACTATCAGTCATTGAGGGCTCTTCTAAACAAGAAATTCCATCCCTGAGGGCTCCACATCTGAGAAATTGTATCCTTGTTCTGCTAGCTTAGCATAACCAAATTTGGAAATAGAGTTGCACAGCATTCTTCTCTAATTAGTTGTTATGTTCTCCTTCATTTCCTTGTGTCCTTTTTCAAACAACTTTGAAATGCTATACTTGAGCCGAGTTCAATTAGAAACAAATTATCTTATCTCCACGAGGTAGGGGTAAAGTTTGCATACACCCCACGTACACCCCTCCCTAGATCCCACCTCCACTGATGGATTACACTCACTGGGTTTGTTGTTGTCGTATTAAAGGGGAAAATGAAATGTGTCCTAACATTCTAGTAAATGTGTTGTGAATAATATTTTTTAATACTCATTCTTTTCAGGTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAGGTATGACAAACTCAACTCTGGCTCTAACTGTGATTTTAATACATTACACCGTCATTATGCCTTTGTTTCATGTGAAGCTTTCCTACTATATGTGACATATAAGATAATTATACAGTTAAGGACAAGATACATTTTCATTAATCTTAGGTGATATTTTTGTTTCTAACTAGACGAAAACTTAGATATCATACTTGTGCTAGAGCGTCGGTCATACTTGCTGATCAACCAAAAAAGGGGCAGGTCATACCTGCGGCAATTATGTATGTATAGGTGGCAAATGGGCGGGTTGGGCTGAATTTGGGCTCGTCAAAATAGGCTGAGCTAATAAATAGCGGGTATTGACCCACCCAAAGTCACTTGGGCTGAAATGTGCAAAAATGCGGGTTATAACCCAACTTGCCGAACTCTTATTAAGTTTTAATTGCTTGATTTGTTCTTTTTAAATTTTTTATACCTTATAAAATTATTGTATTTCTTTTTTATGACCATATTAATATAATATATCAAATAAAATAAAACATCCTTTTAAAAATATTTTGACAAGATTTCCAATGGATCAATTTGGGCTAGACATCAGTCCAAAGTTTGATGGGCTGAAATGAGCTGAGCTAATAAATGAGCGGGTCAATAATTTTGCCATCTCTATATGTATTTCATTAGGGAAATAAATTCAAGATGGGTCGAAATGCCTGTTTGGGTGTGGTCTGATGATTGGACATTCTAAAAAGTAGTCAAGTCCTTAAGTATGGGTTCTATGGAAGAACTCAAGTTTTTGCATGCTGGAAGTTGCATCATATCAGAACTTTTGTGAGGAACTTCTTACTATTTTGTGCTGCTGCGACTGTACCTTTGGCTAGAGTGTCTTTTTCTTTTTATTGGTAACCTTTGACTAGAGTCTCTTTACACAATTTAGTTCCTGTTGACATGTATATCAGACTATTTGGAGAAATATTTTTATTCTTTTCAATTTTGTATAAGCTCTATATTCAACAAGATACATTATCTTGGGTTCTTTTTATGCCATTTCAATTTCTAAAACCCAGTTTTTCTCCAGGTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAGGTGTGTAATCAGGCATACTCATTATTCCATTTCAGAAAGCATATTTATTAGTTTTAACAAATCTTCCATTTGTTTTGAAAGTTAGATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAGGTCAGTCATTTCTAATTGATGCAACAACTTGATTGTAGATATTGTGAGGGGTGACAAGAGGTGCCTGGATTACTTTCAACTCTCTCCTATTATGGTTAATATGTTCTTTTATTATGTTAAAATGTCGACTGCCTTGTATTCATTTTCACGAAAATGTTATTCTTAGAGTTTTCAGCTATAAGTTGCTCTTGGTTTTAGCATGCATACTACAACAATTTGGGAGTAGAAATTTTCTAAAACTAACCGTAGCTGCAGTTGAAGTTCATCTGAGAAGGGGAGAAGTGTTCAAAATCTGTTTGGTGTGAAGGAACATATTTGTGGAAGATAAATCACTTTTTAGGGTTTTGTTGCCAAATAATGTTTTCCATCAAATGGGGGAGAACGTCTTCTGTTACACATGTATGGAAGTTATTTTCGTTACAGTTACCACAACTTCTAACTTCATATCACTGCTCTGACAAACATTTAGACATTATAATAAATCTTTATACTGTGTTACCTTTGTTAAAAGTATAAATAAAAATAAATCTTTATACTTAAAAAATTTCATCAACATACTATACAATGTGCTAACATTATTATTAACTCTTGATAAATGTCTTTTTTTTAAGAAACTATATTCTACGCACCAATGAACCACTGGGAAGCATTTTTCATAGAAGATATTTATCAGAAAATGACTTCATCTACATCGTACCAAACACATATAGTATTTTTTGATAGTTCTGCCTGGATAACTTGAGTCCACTTCAGAAAGATATTTTTTTCACCTGGTCTTTGTTCTAAGTAGGTATCCTTTTGTCTTGGAAGTTGCCTTTTTGCTGACCGCTTTAGTAGAATCAAGCAAGATGAGCCCAACTTTCGAAGGAATACCCTTAAGGAAATTTAGTAACTTGTAATTTTACTGCAATTTCCCCTCCTTGAGTTCTTGAGTTGTTCAAGGAACTGTAGGGTTTGTAAAATAAATCTTGGGTAGTGTTGAAGGAGTGGAATAGTAGGAATATTGAAGATATATCTAATTCCATTCACAAGGTTAAATGGAATTGCATTGTATCTCTACATTTTTGGTGTAAAGAGATAGGATTAGAGGATTCAGATCAACTTTTAGAATTTTTAGGATCCTTGTAAGTATTCTGTTTTTTGTTCTTCTCTGATTTTCTAAAGGTCCCCAGCATAACCTTTTTTATTTAAAAAAAATTTAAGCCATCACCATTACAACTTAAAGCTATTAGGTGTGGGGTTTGGCTTGACCCTACCATGTCTATAGTTTCCAACATAAATTACACAAAAACAGAGGGAGGATTTACCTAACCTCTGGCAAAAATAGAAAGTGGAAATTAGGACATCAAAAAATGGAATGCAACAAACTTATAACCTTCCACTCAAGCAAAATACAAGATTCAACTAATAAAAAAATTACATTTGTCATATCTTTTTTTTATACAAGGTAGTATGTGTTACCTACCTATTCTCAAAAAAAAAAAAAAAAGAATCTTGGGGCTAACTCAATCCCAAACGTCCCAAGACCATATAAGGAGACTAGCCATTTCTTTTTCGTCTGAGGTGGGACTCGTCAACCCCAACCTCACGCCCAGGACTGGAAATCTGGATACTGGACAATTTAATAAGGGGTCGAATATCAGGAAACAAGAATTGGGATGGTCTGATACCATGTAAGAAACTCAACCCCAAAAAGGCTAGCTCAAGTGGGGAGGGTTGCACAAGACCAGATAAGGAGAGATTCTTCAAGAGAGATGTTTGTATTTTTACTTCAATGTACCCTCATTGGTTTCTTGAGTTGTTAAAAGAACTTTATAGCTCTTCTTAGACAGTTTATATAGTCTCGTCACCTAGCACTTCTTTTCATGAAGTAAAGGATTGTCACTTAACTAGTGTTTAGTTGAGTTGATTGCTTTATGTTTCTTTTTTTTTTTGTGGGATTATGGTAGAAATTATGATTTTAACTTACATGCTTATGCCTTCCCTAGGTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTC</genome_strand>
        <mrna_strand>AGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG.....................................................................................ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E307873" ref_strand="+" ref_description="SGN-E307873 [cLEY-20-O19]">
      <seq>aacataatatgaagagtgatgctgcagctctgctcaaagagaaggatgagataattactcaagtaatggctgaaggtgagcagctttctaaaaagcaagctgcccaagaagctcagatgagaaagttaagggcacagatcagagagcttgaagaagagaagaaaggattacataccaagcttgaggttgaagagaacagagtagagagtataaagagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="55833" stop="51889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55533" g_stop="55459" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55458" i_stop="54405" i_length="1054">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54404" g_stop="54343" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="137" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54342" i_stop="54258" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54257" g_stop="54210" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="185" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54209" i_stop="52222" i_length="1988">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52221" g_stop="52189" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="218" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E307873" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55533" e_stop="55459"/>
          <exon e_start="54404" e_stop="54343"/>
          <exon e_start="54257" e_stop="54210"/>
          <exon e_start="52221" e_stop="52189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAGGTATGACAAACTCAACTCTGGCTCTAACTGTGATTTTAATACATTACACCGTCATTATGCCTTTGTTTCATGTGAAGCTTTCCTACTATATGTGACATATAAGATAATTATACAGTTAAGGACAAGATACATTTTCATTAATCTTAGGTGATATTTTTGTTTCTAACTAGACGAAAACTTAGATATCATACTTGTGCTAGAGCGTCGGTCATACTTGCTGATCAACCAAAAAAGGGGCAGGTCATACCTGCGGCAATTATGTATGTATAGGTGGCAAATGGGCGGGTTGGGCTGAATTTGGGCTCGTCAAAATAGGCTGAGCTAATAAATAGCGGGTATTGACCCACCCAAAGTCACTTGGGCTGAAATGTGCAAAAATGCGGGTTATAACCCAACTTGCCGAACTCTTATTAAGTTTTAATTGCTTGATTTGTTCTTTTTAAATTTTTTATACCTTATAAAATTATTGTATTTCTTTTTTATGACCATATTAATATAATATATCAAATAAAATAAAACATCCTTTTAAAAATATTTTGACAAGATTTCCAATGGATCAATTTGGGCTAGACATCAGTCCAAAGTTTGATGGGCTGAAATGAGCTGAGCTAATAAATGAGCGGGTCAATAATTTTGCCATCTCTATATGTATTTCATTAGGGAAATAAATTCAAGATGGGTCGAAATGCCTGTTTGGGTGTGGTCTGATGATTGGACATTCTAAAAAGTAGTCAAGTCCTTAAGTATGGGTTCTATGGAAGAACTCAAGTTTTTGCATGCTGGAAGTTGCATCATATCAGAACTTTTGTGAGGAACTTCTTACTATTTTGTGCTGCTGCGACTGTACCTTTGGCTAGAGTGTCTTTTTCTTTTTATTGGTAACCTTTGACTAGAGTCTCTTTACACAATTTAGTTCCTGTTGACATGTATATCAGACTATTTGGAGAAATATTTTTATTCTTTTCAATTTTGTATAAGCTCTATATTCAACAAGATACATTATCTTGGGTTCTTTTTATGCCATTTCAATTTCTAAAACCCAGTTTTTCTCCAGGTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAGGTGTGTAATCAGGCATACTCATTATTCCATTTCAGAAAGCATATTTATTAGTTTTAACAAATCTTCCATTTGTTTTGAAAGTTAGATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAGGTCAGTCATTTCTAATTGATGCAACAACTTGATTGTAGATATTGTGAGGGGTGACAAGAGGTGCCTGGATTACTTTCAACTCTCTCCTATTATGGTTAATATGTTCTTTTATTATGTTAAAATGTCGACTGCCTTGTATTCATTTTCACGAAAATGTTATTCTTAGAGTTTTCAGCTATAAGTTGCTCTTGGTTTTAGCATGCATACTACAACAATTTGGGAGTAGAAATTTTCTAAAACTAACCGTAGCTGCAGTTGAAGTTCATCTGAGAAGGGGAGAAGTGTTCAAAATCTGTTTGGTGTGAAGGAACATATTTGTGGAAGATAAATCACTTTTTAGGGTTTTGTTGCCAAATAATGTTTTCCATCAAATGGGGGAGAACGTCTTCTGTTACACATGTATGGAAGTTATTTTCGTTACAGTTACCACAACTTCTAACTTCATATCACTGCTCTGACAAACATTTAGACATTATAATAAATCTTTATACTGTGTTACCTTTGTTAAAAGTATAAATAAAAATAAATCTTTATACTTAAAAAATTTCATCAACATACTATACAATGTGCTAACATTATTATTAACTCTTGATAAATGTCTTTTTTTTAAGAAACTATATTCTACGCACCAATGAACCACTGGGAAGCATTTTTCATAGAAGATATTTATCAGAAAATGACTTCATCTACATCGTACCAAACACATATAGTATTTTTTGATAGTTCTGCCTGGATAACTTGAGTCCACTTCAGAAAGATATTTTTTTCACCTGGTCTTTGTTCTAAGTAGGTATCCTTTTGTCTTGGAAGTTGCCTTTTTGCTGACCGCTTTAGTAGAATCAAGCAAGATGAGCCCAACTTTCGAAGGAATACCCTTAAGGAAATTTAGTAACTTGTAATTTTACTGCAATTTCCCCTCCTTGAGTTCTTGAGTTGTTCAAGGAACTGTAGGGTTTGTAAAATAAATCTTGGGTAGTGTTGAAGGAGTGGAATAGTAGGAATATTGAAGATATATCTAATTCCATTCACAAGGTTAAATGGAATTGCATTGTATCTCTACATTTTTGGTGTAAAGAGATAGGATTAGAGGATTCAGATCAACTTTTAGAATTTTTAGGATCCTTGTAAGTATTCTGTTTTTTGTTCTTCTCTGATTTTCTAAAGGTCCCCAGCATAACCTTTTTTATTTAAAAAAAATTTAAGCCATCACCATTACAACTTAAAGCTATTAGGTGTGGGGTTTGGCTTGACCCTACCATGTCTATAGTTTCCAACATAAATTACACAAAAACAGAGGGAGGATTTACCTAACCTCTGGCAAAAATAGAAAGTGGAAATTAGGACATCAAAAAATGGAATGCAACAAACTTATAACCTTCCACTCAAGCAAAATACAAGATTCAACTAATAAAAAAATTACATTTGTCATATCTTTTTTTTATACAAGGTAGTATGTGTTACCTACCTATTCTCAAAAAAAAAAAAAAAAGAATCTTGGGGCTAACTCAATCCCAAACGTCCCAAGACCATATAAGGAGACTAGCCATTTCTTTTTCGTCTGAGGTGGGACTCGTCAACCCCAACCTCACGCCCAGGACTGGAAATCTGGATACTGGACAATTTAATAAGGGGTCGAATATCAGGAAACAAGAATTGGGATGGTCTGATACCATGTAAGAAACTCAACCCCAAAAAGGCTAGCTCAAGTGGGGAGGGTTGCACAAGACCAGATAAGGAGAGATTCTTCAAGAGAGATGTTTGTATTTTTACTTCAATGTACCCTCATTGGTTTCTTGAGTTGTTAAAAGAACTTTATAGCTCTTCTTAGACAGTTTATATAGTCTCGTCACCTAGCACTTCTTTTCATGAAGTAAAGGATTGTCACTTAACTAGTGTTTAGTTGAGTTGATTGCTTTATGTTTCTTTTTTTTTTTGTGGGATTATGGTAGAAATTATGATTTTAACTTACATGCTTATGCCTTCCCTAGGTTGAAGAGAACAAAGTAGAGAGTATAAAGAGG</genome_strand>
        <mrna_strand>AACATAATATGAAGAGTGATGCTGCAGCTCTGCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG.....................................................................................ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGAGAACAGAGTAGAGAGTATAAAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E544364" ref_strand="-" ref_description="SGN-E544364 [TUS-66-K14]">
      <seq>aagaagtcaccatggaatctccttcaggtgaatcacgggatgcatcaagtgaccgagcagatagtggaagaccttctgtttcagattctgtaactgccagcgaaggtgaaagtcttgaagagcattctaacaggagctttcttggtgaccagcacactgatgaaggtctgaagaagctatctgatacagttatgcctgaaaatgagttggttagtatacctgtggaggctacccagcgaggaaatgatcaggagactggtgtgaaagaacggttgagctccggaagcaactcttcagatgttaccaattcagtggttgaactggagaagctgaaaaaggaaatgaaaatgatggaaactgcattacaaggagctgctagacaagctcaggctaaagctgatgaaatagcgaagttgatgaatgagaacgagcaattgaaggctgttactgaggatctgagaaggaagtccagtgatgcagcaattgaatctctgcgagaagagtaccatcaaaaagtttctgctcttgagaggaaggtttatgctctcaccaaagaaagggatacacttcgcagggaacataataagaagagtgatgctgcagctcttctcaaagagaaggatgagataattactcaagtaatggctgaaggtgagcagctttctaaaaagcaagctgcccaagaagctcagatgagaaagttaagggcacagatcagagagcttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="59583" stop="53932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59283" g_stop="58895" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58894" i_stop="57995" i_length="900">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57994" g_stop="57923" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="461" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57922" i_stop="56758" i_length="1165">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56757" g_stop="56683" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="536" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56682" i_stop="55574" i_length="1109">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55573" g_stop="55459" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="651" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55458" i_stop="54405" i_length="1054">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54404" g_stop="54343" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="713" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54342" i_stop="54258" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54257" g_stop="54232" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="739" r_length="26" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E544364" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544364" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59283" e_stop="58895"/>
          <exon e_start="57994" e_stop="57923"/>
          <exon e_start="56757" e_stop="56683"/>
          <exon e_start="55573" e_stop="55459"/>
          <exon e_start="54404" e_stop="54343"/>
          <exon e_start="54257" e_stop="54232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAGGTATGTCCATATGCTACTTTAATGGAAATTTATGCACCTTCTGCTCCTCAGCATCAGTGGAACATTTCTGAATCTACTGACGTTACTTGAGAATATGAATCTTTTGTTGTATGCACCTATAGTAGGCGAGTCCAATAATTCACGTTGTATTACCTAAGATTAGCTGAAATCTGAATCCCACTCATCCTCAATAATTTCTCCCAACTTGTGTGGTCATGGATAAAAGTTGCTTCAATGAGTTGATTTTGACTAAAAGTAGCTTCAATTAAAGAAGTTCTGATTTGAAGTGTGTGTGTCATTGACACATCCCATTGATATTGTCTTGTACTTCTCAAATGACATAGTTTACGTTCTTGAGGTCTCAAATGTCTGAACACATGGATATCTTTTCCATAGTCCGTGGATCCTTTCTGAAGTTGTGGAATCCGTTGGCAAGGATGTTGGTATACGCCTAAAGATGATTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCATTATTCCAAAGCCAATAAATATATTTAAGGATTCTGGGTGATTGGAACTAATTCTCCCATCATGTATGAACTTCGCAATATCTTCCTGTTATGCCTCAAACTTAGAGGGAAGCTTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCAAGATTATTCCAAAGACAATAAATATATTTAAGGATTTTGGGTGATTGGAACTAATTTCTTCCATTATGTATGAACTTCTCAATATCTTCCTGTCATGCCACAAACTTGAAAAAAAATTCAGTTGGTGTGTTAGACCCCTTATTTTCAGTTCTTGTTTATAAAATGATGAACACTCAACAAGATGACATGTCATTGTTTTTCCTCAGGCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGAGTAAGTTCTCATCATTTTGAAGTTCCTTTCGAGGCTGTTAATTCAATTTGTTGCTGTCCGCTAGTTTTTGAAATGGCATGAGTCAAAGACATACTATAGTTCCCATTGTTTCAGGATGAATTTACCATCTCATAAATTAGATTTCTAGTGTTGTTTTTCTGCTTGTTATTGCAGAACATTTCTTTCTCTTCTGCCCTTGCTTGCAATTTTCTTCTAGATAAGTTAATCTTGCATGTGAGCCAGATATTGTGTAAGCTTCTGTGCTGACTGGTCGAGTCATCTTAACTACCACCTAATTTGTTAAGCACTTTTTAATGAACATCATCAATAATCAGACTTCTCTTGACTAGATGCGTGTAGATCAGGAAGAATCGCTTCTGTTGCATAATTTCATATGACTCTCATCATTGATGATTTTGATTTAACTGCTTTCACATCAATACACGTTGCATTTTCTCTTATACAAATTCTAGCTTCTGTCCTGTTTGTTAGATGACTTGTGCTTCGTATGCTCTTCTATTCTCTCAGAACTGCTAGTTTCCTGTATCAATTTAAGTACAGAATGTTTCGGGGTGGCCCAGTGGTTTGGGCTTGGAATTTTTATGTTGGAGGTCTCAAGTGCGAAACCTCTTGCCAGCGAAAGCAAGGGGTTTGCCTTCAGGGTTGAGCTCGTCGCACCGGGCTTGGCTAGTGCGGGTTACCTCTCCTATGTTGTTTGCGAGCTATTGCATGTGGGTGGGGGTGGGGGGTGGGGGTGGGGGTTTACCCTGTGCGCACCTAAAGGATAGTGGCTGTGAGTTTCCCTTGTCATAAAAAAAAAAAGTTATCCCTGCAAGCAATTATTCTGTTGTTCATTTTATCTTCCTTTAGTATTAATATCATATGTGTAATTGGATCTTTATTGCTGCTGGGTGGGATCAGCGTAGCACGTGCCAATGGATGTGTGTTTTGTAATGGATAATGGATCGAAACTTTAGTTAACTCTTTTGTTAATTTTATTTAAATTGGTGAGTTCCAATGCACTTTTTAAAACTTTTTTCTAATTCCCCATCCCCACAGCGTTCCTCTTATGTGTACGTTAGGTTCATCTTTCATCCCTCATAATTCCCTTCTAAGTGAAACTCCACCAATATTATATCTCTTGCTTACACACTAATTTTTACAGAGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAGGTATGAATGTGTTCACATGAATGTTTCAGCTTAAACTTCCATTGCTAAGTGCTTGCTTTATGTCTTGATCATCAGCCTTTTCACATCATAACAGTAGCATAAATTCTTGAAAGACAGTTTATTTGAGCTTTCACATTGTTGCATAGTTTTTCTACTTCATTTAGGCATCACTACAATGTGCAGCTTCAGCTTTTATGTGTATAACTTCATATTTTATGCTTGCTGGTTCTGTATAACGCTTGATGGTTTCTTACACTTTTAGTTTTTCAATGGTTCTAATAGACTCTAAGGATGCAGGATTATCTTGTTGAGCTGTAATGGGTCGAACCCCTTTAGTGTCAATAAGACCTTATTAACTACATATATGAATTGGGACGGGGAGCTTGACCCTCGAAAATCTGTATACTTCCACAGGAGAACATTCTTTGGAGAAACTCCATACCCTTCTTTTAGAGTTCTTGCTCTTGTAAAAAAAAGTAGAAGCATCTTTTATATGCTGCACATACATGATATTGACAGAAGAAGAGAAACATTCTGTGTTGGCTGGTAATATTCCATCTTTTCCGATTTCATTAAATTTTTTGAAGAAATTGCACCATCCTTCCCGCATCTCTATTTACTGCTGAAACCTCATGTCTACTACTTCCTAAAATTGCAGTTCCCCAGTTTGTTTTTTTAAAGAAAATCCTCCTGTACTATCAGTCATTGAGGGCTCTTCTAAACAAGAAATTCCATCCCTGAGGGCTCCACATCTGAGAAATTGTATCCTTGTTCTGCTAGCTTAGCATAACCAAATTTGGAAATAGAGTTGCACAGCATTCTTCTCTAATTAGTTGTTATGTTCTCCTTCATTTCCTTGTGTCCTTTTTCAAACAACTTTGAAATGCTATACTTGAGCCGAGTTCAATTAGAAACAAATTATCTTATCTCCACGAGGTAGGGGTAAAGTTTGCATACACCCCACGTACACCCCTCCCTAGATCCCACCTCCACTGATGGATTACACTCACTGGGTTTGTTGTTGTCGTATTAAAGGGGAAAATGAAATGTGTCCTAACATTCTAGTAAATGTGTTGTGAATAATATTTTTTAATACTCATTCTTTTCAGGTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAGGTATGACAAACTCAACTCTGGCTCTAACTGTGATTTTAATACATTACACCGTCATTATGCCTTTGTTTCATGTGAAGCTTTCCTACTATATGTGACATATAAGATAATTATACAGTTAAGGACAAGATACATTTTCATTAATCTTAGGTGATATTTTTGTTTCTAACTAGACGAAAACTTAGATATCATACTTGTGCTAGAGCGTCGGTCATACTTGCTGATCAACCAAAAAAGGGGCAGGTCATACCTGCGGCAATTATGTATGTATAGGTGGCAAATGGGCGGGTTGGGCTGAATTTGGGCTCGTCAAAATAGGCTGAGCTAATAAATAGCGGGTATTGACCCACCCAAAGTCACTTGGGCTGAAATGTGCAAAAATGCGGGTTATAACCCAACTTGCCGAACTCTTATTAAGTTTTAATTGCTTGATTTGTTCTTTTTAAATTTTTTATACCTTATAAAATTATTGTATTTCTTTTTTATGACCATATTAATATAATATATCAAATAAAATAAAACATCCTTTTAAAAATATTTTGACAAGATTTCCAATGGATCAATTTGGGCTAGACATCAGTCCAAAGTTTGATGGGCTGAAATGAGCTGAGCTAATAAATGAGCGGGTCAATAATTTTGCCATCTCTATATGTATTTCATTAGGGAAATAAATTCAAGATGGGTCGAAATGCCTGTTTGGGTGTGGTCTGATGATTGGACATTCTAAAAAGTAGTCAAGTCCTTAAGTATGGGTTCTATGGAAGAACTCAAGTTTTTGCATGCTGGAAGTTGCATCATATCAGAACTTTTGTGAGGAACTTCTTACTATTTTGTGCTGCTGCGACTGTACCTTTGGCTAGAGTGTCTTTTTCTTTTTATTGGTAACCTTTGACTAGAGTCTCTTTACACAATTTAGTTCCTGTTGACATGTATATCAGACTATTTGGAGAAATATTTTTATTCTTTTCAATTTTGTATAAGCTCTATATTCAACAAGATACATTATCTTGGGTTCTTTTTATGCCATTTCAATTTCTAAAACCCAGTTTTTCTCCAGGTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAGGTGTGTAATCAGGCATACTCATTATTCCATTTCAGAAAGCATATTTATTAGTTTTAACAAATCTTCCATTTGTTTTGAAAGTTAGATCAGAGAGCTTGAAGAAGAGAAGAA</genome_strand>
        <mrna_strand>AAGAAGTCACCATGGAATCTCCTTCAGGTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG.....................................................................................ATCAGAGAGCTTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E544371" ref_strand="-" ref_description="SGN-E544371 [TUS-66-K18]">
      <seq>acggttgagctccggaagcaactcttcagatgttaccaattcagtggttgaactggagaagctgaaaaaggaaatgaaaatgatggaaactgcattccaaggaggtgttagacaagctcaggctaaagctgatgaaatagcgaagttgatgaatgagaacgagcaattgaaggctgttactgaggatctgagaaggaagtccagtgatgcagcaattgaatctctgcgagaagagtaccatcaaaaagtttctgctcttgagaggaaggtttatgctctcaccaaagaaagggatacacttcgcagggaacataataagaagagtgatgctgcagctcttctcaaagagaaggatgagataattactcaagtaatggctgaaggtgagcagctttctaaaaagcaagctgcccaagaagctacagatgagaaagttaagggcacagatcagagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="59315" stop="54033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59015" g_stop="58895" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58894" i_stop="57995" i_length="900">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57994" g_stop="57923" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="193" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57922" i_stop="56758" i_length="1165">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56757" g_stop="56683" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="268" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56682" i_stop="55574" i_length="1109">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55573" g_stop="55459" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="383" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55458" i_stop="54405" i_length="1054">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54404" g_stop="54343" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="446" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54342" i_stop="54258" i_length="85">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.822" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54257" g_stop="54248" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="456" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E544371" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544371" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59015" e_stop="58895"/>
          <exon e_start="57994" e_stop="57923"/>
          <exon e_start="56757" e_stop="56683"/>
          <exon e_start="55573" e_stop="55459"/>
          <exon e_start="54404" e_stop="54343"/>
          <exon e_start="54257" e_stop="54248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAGGTATGTCCATATGCTACTTTAATGGAAATTTATGCACCTTCTGCTCCTCAGCATCAGTGGAACATTTCTGAATCTACTGACGTTACTTGAGAATATGAATCTTTTGTTGTATGCACCTATAGTAGGCGAGTCCAATAATTCACGTTGTATTACCTAAGATTAGCTGAAATCTGAATCCCACTCATCCTCAATAATTTCTCCCAACTTGTGTGGTCATGGATAAAAGTTGCTTCAATGAGTTGATTTTGACTAAAAGTAGCTTCAATTAAAGAAGTTCTGATTTGAAGTGTGTGTGTCATTGACACATCCCATTGATATTGTCTTGTACTTCTCAAATGACATAGTTTACGTTCTTGAGGTCTCAAATGTCTGAACACATGGATATCTTTTCCATAGTCCGTGGATCCTTTCTGAAGTTGTGGAATCCGTTGGCAAGGATGTTGGTATACGCCTAAAGATGATTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCATTATTCCAAAGCCAATAAATATATTTAAGGATTCTGGGTGATTGGAACTAATTCTCCCATCATGTATGAACTTCGCAATATCTTCCTGTTATGCCTCAAACTTAGAGGGAAGCTTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCAAGATTATTCCAAAGACAATAAATATATTTAAGGATTTTGGGTGATTGGAACTAATTTCTTCCATTATGTATGAACTTCTCAATATCTTCCTGTCATGCCACAAACTTGAAAAAAAATTCAGTTGGTGTGTTAGACCCCTTATTTTCAGTTCTTGTTTATAAAATGATGAACACTCAACAAGATGACATGTCATTGTTTTTCCTCAGGCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGAGTAAGTTCTCATCATTTTGAAGTTCCTTTCGAGGCTGTTAATTCAATTTGTTGCTGTCCGCTAGTTTTTGAAATGGCATGAGTCAAAGACATACTATAGTTCCCATTGTTTCAGGATGAATTTACCATCTCATAAATTAGATTTCTAGTGTTGTTTTTCTGCTTGTTATTGCAGAACATTTCTTTCTCTTCTGCCCTTGCTTGCAATTTTCTTCTAGATAAGTTAATCTTGCATGTGAGCCAGATATTGTGTAAGCTTCTGTGCTGACTGGTCGAGTCATCTTAACTACCACCTAATTTGTTAAGCACTTTTTAATGAACATCATCAATAATCAGACTTCTCTTGACTAGATGCGTGTAGATCAGGAAGAATCGCTTCTGTTGCATAATTTCATATGACTCTCATCATTGATGATTTTGATTTAACTGCTTTCACATCAATACACGTTGCATTTTCTCTTATACAAATTCTAGCTTCTGTCCTGTTTGTTAGATGACTTGTGCTTCGTATGCTCTTCTATTCTCTCAGAACTGCTAGTTTCCTGTATCAATTTAAGTACAGAATGTTTCGGGGTGGCCCAGTGGTTTGGGCTTGGAATTTTTATGTTGGAGGTCTCAAGTGCGAAACCTCTTGCCAGCGAAAGCAAGGGGTTTGCCTTCAGGGTTGAGCTCGTCGCACCGGGCTTGGCTAGTGCGGGTTACCTCTCCTATGTTGTTTGCGAGCTATTGCATGTGGGTGGGGGTGGGGGGTGGGGGTGGGGGTTTACCCTGTGCGCACCTAAAGGATAGTGGCTGTGAGTTTCCCTTGTCATAAAAAAAAAAAGTTATCCCTGCAAGCAATTATTCTGTTGTTCATTTTATCTTCCTTTAGTATTAATATCATATGTGTAATTGGATCTTTATTGCTGCTGGGTGGGATCAGCGTAGCACGTGCCAATGGATGTGTGTTTTGTAATGGATAATGGATCGAAACTTTAGTTAACTCTTTTGTTAATTTTATTTAAATTGGTGAGTTCCAATGCACTTTTTAAAACTTTTTTCTAATTCCCCATCCCCACAGCGTTCCTCTTATGTGTACGTTAGGTTCATCTTTCATCCCTCATAATTCCCTTCTAAGTGAAACTCCACCAATATTATATCTCTTGCTTACACACTAATTTTTACAGAGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAGGTATGAATGTGTTCACATGAATGTTTCAGCTTAAACTTCCATTGCTAAGTGCTTGCTTTATGTCTTGATCATCAGCCTTTTCACATCATAACAGTAGCATAAATTCTTGAAAGACAGTTTATTTGAGCTTTCACATTGTTGCATAGTTTTTCTACTTCATTTAGGCATCACTACAATGTGCAGCTTCAGCTTTTATGTGTATAACTTCATATTTTATGCTTGCTGGTTCTGTATAACGCTTGATGGTTTCTTACACTTTTAGTTTTTCAATGGTTCTAATAGACTCTAAGGATGCAGGATTATCTTGTTGAGCTGTAATGGGTCGAACCCCTTTAGTGTCAATAAGACCTTATTAACTACATATATGAATTGGGACGGGGAGCTTGACCCTCGAAAATCTGTATACTTCCACAGGAGAACATTCTTTGGAGAAACTCCATACCCTTCTTTTAGAGTTCTTGCTCTTGTAAAAAAAAGTAGAAGCATCTTTTATATGCTGCACATACATGATATTGACAGAAGAAGAGAAACATTCTGTGTTGGCTGGTAATATTCCATCTTTTCCGATTTCATTAAATTTTTTGAAGAAATTGCACCATCCTTCCCGCATCTCTATTTACTGCTGAAACCTCATGTCTACTACTTCCTAAAATTGCAGTTCCCCAGTTTGTTTTTTTAAAGAAAATCCTCCTGTACTATCAGTCATTGAGGGCTCTTCTAAACAAGAAATTCCATCCCTGAGGGCTCCACATCTGAGAAATTGTATCCTTGTTCTGCTAGCTTAGCATAACCAAATTTGGAAATAGAGTTGCACAGCATTCTTCTCTAATTAGTTGTTATGTTCTCCTTCATTTCCTTGTGTCCTTTTTCAAACAACTTTGAAATGCTATACTTGAGCCGAGTTCAATTAGAAACAAATTATCTTATCTCCACGAGGTAGGGGTAAAGTTTGCATACACCCCACGTACACCCCTCCCTAGATCCCACCTCCACTGATGGATTACACTCACTGGGTTTGTTGTTGTCGTATTAAAGGGGAAAATGAAATGTGTCCTAACATTCTAGTAAATGTGTTGTGAATAATATTTTTTAATACTCATTCTTTTCAGGTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAGGTATGACAAACTCAACTCTGGCTCTAACTGTGATTTTAATACATTACACCGTCATTATGCCTTTGTTTCATGTGAAGCTTTCCTACTATATGTGACATATAAGATAATTATACAGTTAAGGACAAGATACATTTTCATTAATCTTAGGTGATATTTTTGTTTCTAACTAGACGAAAACTTAGATATCATACTTGTGCTAGAGCGTCGGTCATACTTGCTGATCAACCAAAAAAGGGGCAGGTCATACCTGCGGCAATTATGTATGTATAGGTGGCAAATGGGCGGGTTGGGCTGAATTTGGGCTCGTCAAAATAGGCTGAGCTAATAAATAGCGGGTATTGACCCACCCAAAGTCACTTGGGCTGAAATGTGCAAAAATGCGGGTTATAACCCAACTTGCCGAACTCTTATTAAGTTTTAATTGCTTGATTTGTTCTTTTTAAATTTTTTATACCTTATAAAATTATTGTATTTCTTTTTTATGACCATATTAATATAATATATCAAATAAAATAAAACATCCTTTTAAAAATATTTTGACAAGATTTCCAATGGATCAATTTGGGCTAGACATCAGTCCAAAGTTTGATGGGCTGAAATGAGCTGAGCTAATAAATGAGCGGGTCAATAATTTTGCCATCTCTATATGTATTTCATTAGGGAAATAAATTCAAGATGGGTCGAAATGCCTGTTTGGGTGTGGTCTGATGATTGGACATTCTAAAAAGTAGTCAAGTCCTTAAGTATGGGTTCTATGGAAGAACTCAAGTTTTTGCATGCTGGAAGTTGCATCATATCAGAACTTTTGTGAGGAACTTCTTACTATTTTGTGCTGCTGCGACTGTACCTTTGGCTAGAGTGTCTTTTTCTTTTTATTGGTAACCTTTGACTAGAGTCTCTTTACACAATTTAGTTCCTGTTGACATGTATATCAGACTATTTGGAGAAATATTTTTATTCTTTTCAATTTTGTATAAGCTCTATATTCAACAAGATACATTATCTTGGGTTCTTTTTATGCCATTTCAATTTCTAAAACCCAGTTTTTCTCCAGGTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCT-CAGATGAGAAAGTTAAGGGCACAGGTGTGTAATCAGGCATACTCATTATTCCATTTCAGAAAGCATATTTATTAGTTTTAACAAATCTTCCATTTGTTTTGAAAGTTAGATCAGAGAGC</genome_strand>
        <mrna_strand>ACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTCCAAGGAGGTGTTAGACAAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTACAGATGAGAAAGTTAAGGGCACAG.....................................................................................ATCAGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E570154" ref_strand="+" ref_description="SGN-E570154 [14694]">
      <seq>aagtgaccgagcagatagtggaagaccttctgtttcagattctgtaactgccagtgaaggtgaaagttctgaagagcattctaacaggagctttcttggtgaccagcacacagatgaaggtctgaagaggctatctgatacgattatgcctgaaaatgagttggttagtagacctgttgaggctacccagcgaggaaatgatcatgagactggtgtgaaagaacggttgagctccggaagcaactcttcagatgttaccaattcagtggttgaactggagaagctgaaaaaggaaatgaaaatgatggaaactgcattacaaggagctgctagacaagctcaggctaaagctgatgaacttgcgaagttgatgaatgagaatgagcaattgaaggctgttactgaggatctgagaaggaagtccagtgatgcagaaattgaatctctgcgagaagagtaccatcaaaaagtttctgctcttgagaggaaggtttatgctctcaccaaagaaagggatacacttcgcaggggaacataataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="59537" stop="55224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59237" g_stop="58895" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58894" i_stop="57995" i_length="900">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57994" g_stop="57923" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="415" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57922" i_stop="56758" i_length="1165">
            <donor d_prob="0.654" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56757" g_stop="56683" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="490" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56682" i_stop="55574" i_length="1109">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55573" g_stop="55524" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="541" r_length="51" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E570154" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59237" e_stop="58895"/>
          <exon e_start="57994" e_stop="57923"/>
          <exon e_start="56757" e_stop="56683"/>
          <exon e_start="55573" e_stop="55524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAGGTATGTCCATATGCTACTTTAATGGAAATTTATGCACCTTCTGCTCCTCAGCATCAGTGGAACATTTCTGAATCTACTGACGTTACTTGAGAATATGAATCTTTTGTTGTATGCACCTATAGTAGGCGAGTCCAATAATTCACGTTGTATTACCTAAGATTAGCTGAAATCTGAATCCCACTCATCCTCAATAATTTCTCCCAACTTGTGTGGTCATGGATAAAAGTTGCTTCAATGAGTTGATTTTGACTAAAAGTAGCTTCAATTAAAGAAGTTCTGATTTGAAGTGTGTGTGTCATTGACACATCCCATTGATATTGTCTTGTACTTCTCAAATGACATAGTTTACGTTCTTGAGGTCTCAAATGTCTGAACACATGGATATCTTTTCCATAGTCCGTGGATCCTTTCTGAAGTTGTGGAATCCGTTGGCAAGGATGTTGGTATACGCCTAAAGATGATTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCATTATTCCAAAGCCAATAAATATATTTAAGGATTCTGGGTGATTGGAACTAATTCTCCCATCATGTATGAACTTCGCAATATCTTCCTGTTATGCCTCAAACTTAGAGGGAAGCTTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCAAGATTATTCCAAAGACAATAAATATATTTAAGGATTTTGGGTGATTGGAACTAATTTCTTCCATTATGTATGAACTTCTCAATATCTTCCTGTCATGCCACAAACTTGAAAAAAAATTCAGTTGGTGTGTTAGACCCCTTATTTTCAGTTCTTGTTTATAAAATGATGAACACTCAACAAGATGACATGTCATTGTTTTTCCTCAGGCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGAGTAAGTTCTCATCATTTTGAAGTTCCTTTCGAGGCTGTTAATTCAATTTGTTGCTGTCCGCTAGTTTTTGAAATGGCATGAGTCAAAGACATACTATAGTTCCCATTGTTTCAGGATGAATTTACCATCTCATAAATTAGATTTCTAGTGTTGTTTTTCTGCTTGTTATTGCAGAACATTTCTTTCTCTTCTGCCCTTGCTTGCAATTTTCTTCTAGATAAGTTAATCTTGCATGTGAGCCAGATATTGTGTAAGCTTCTGTGCTGACTGGTCGAGTCATCTTAACTACCACCTAATTTGTTAAGCACTTTTTAATGAACATCATCAATAATCAGACTTCTCTTGACTAGATGCGTGTAGATCAGGAAGAATCGCTTCTGTTGCATAATTTCATATGACTCTCATCATTGATGATTTTGATTTAACTGCTTTCACATCAATACACGTTGCATTTTCTCTTATACAAATTCTAGCTTCTGTCCTGTTTGTTAGATGACTTGTGCTTCGTATGCTCTTCTATTCTCTCAGAACTGCTAGTTTCCTGTATCAATTTAAGTACAGAATGTTTCGGGGTGGCCCAGTGGTTTGGGCTTGGAATTTTTATGTTGGAGGTCTCAAGTGCGAAACCTCTTGCCAGCGAAAGCAAGGGGTTTGCCTTCAGGGTTGAGCTCGTCGCACCGGGCTTGGCTAGTGCGGGTTACCTCTCCTATGTTGTTTGCGAGCTATTGCATGTGGGTGGGGGTGGGGGGTGGGGGTGGGGGTTTACCCTGTGCGCACCTAAAGGATAGTGGCTGTGAGTTTCCCTTGTCATAAAAAAAAAAAGTTATCCCTGCAAGCAATTATTCTGTTGTTCATTTTATCTTCCTTTAGTATTAATATCATATGTGTAATTGGATCTTTATTGCTGCTGGGTGGGATCAGCGTAGCACGTGCCAATGGATGTGTGTTTTGTAATGGATAATGGATCGAAACTTTAGTTAACTCTTTTGTTAATTTTATTTAAATTGGTGAGTTCCAATGCACTTTTTAAAACTTTTTTCTAATTCCCCATCCCCACAGCGTTCCTCTTATGTGTACGTTAGGTTCATCTTTCATCCCTCATAATTCCCTTCTAAGTGAAACTCCACCAATATTATATCTCTTGCTTACACACTAATTTTTACAGAGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAGGTATGAATGTGTTCACATGAATGTTTCAGCTTAAACTTCCATTGCTAAGTGCTTGCTTTATGTCTTGATCATCAGCCTTTTCACATCATAACAGTAGCATAAATTCTTGAAAGACAGTTTATTTGAGCTTTCACATTGTTGCATAGTTTTTCTACTTCATTTAGGCATCACTACAATGTGCAGCTTCAGCTTTTATGTGTATAACTTCATATTTTATGCTTGCTGGTTCTGTATAACGCTTGATGGTTTCTTACACTTTTAGTTTTTCAATGGTTCTAATAGACTCTAAGGATGCAGGATTATCTTGTTGAGCTGTAATGGGTCGAACCCCTTTAGTGTCAATAAGACCTTATTAACTACATATATGAATTGGGACGGGGAGCTTGACCCTCGAAAATCTGTATACTTCCACAGGAGAACATTCTTTGGAGAAACTCCATACCCTTCTTTTAGAGTTCTTGCTCTTGTAAAAAAAAGTAGAAGCATCTTTTATATGCTGCACATACATGATATTGACAGAAGAAGAGAAACATTCTGTGTTGGCTGGTAATATTCCATCTTTTCCGATTTCATTAAATTTTTTGAAGAAATTGCACCATCCTTCCCGCATCTCTATTTACTGCTGAAACCTCATGTCTACTACTTCCTAAAATTGCAGTTCCCCAGTTTGTTTTTTTAAAGAAAATCCTCCTGTACTATCAGTCATTGAGGGCTCTTCTAAACAAGAAATTCCATCCCTGAGGGCTCCACATCTGAGAAATTGTATCCTTGTTCTGCTAGCTTAGCATAACCAAATTTGGAAATAGAGTTGCACAGCATTCTTCTCTAATTAGTTGTTATGTTCTCCTTCATTTCCTTGTGTCCTTTTTCAAACAACTTTGAAATGCTATACTTGAGCCGAGTTCAATTAGAAACAAATTATCTTATCTCCACGAGGTAGGGGTAAAGTTTGCATACACCCCACGTACACCCCTCCCTAGATCCCACCTCCACTGATGGATTACACTCACTGGGTTTGTTGTTGTCGTATTAAAGGGGAAAATGAAATGTGTCCTAACATTCTAGTAAATGTGTTGTGAATAATATTTTTTAATACTCATTCTTTTCAGGTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCA-GGGAACATAATAA</genome_strand>
        <mrna_strand>AAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGTGAAGGTGAAAGTTCTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACAGATGAAGGTCTGAAGAGGCTATCTGATACGATTATGCCTGAAAATGAGTTGGTTAGTAGACCTGTTGAGGCTACCCAGCGAGGAAATGATCATGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAAGCTGATGAACTTGCGAAGTTGATGAATGAGAATGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGTCCAGTGATGCAGAAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGGAACATAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E417057" ref_strand="+" ref_description="SGN-E417057 [STM-24-D9]">
      <seq>ggagtctcctcctgttcaatcacaggatgcatcaaattaccctgcagacagggaacagaagaaagaagtcaccgtggaatctccttcagctgaatcacgggatgcatcaagtgaccgagcagatagtggaagaccttctgtttcagattctgtaactgccagtgaaggtgaaagttctgaagagcattctaacaggagctttcttggtgaccagcacacagatgaaggtctgaagaggctatctgatacgattatgcctgaaaatgagttggttagtagacctgttgaggctacccagcgaggaaatgatcatgagactggtgtgaaagaacggttgagctccggaagcaactcttcagatgttaccaattcagtggttgaactggagaagctgaaaaaggaaatgaaaatgatggaaactgcattacaaggagctgctagacaagctcaggctaaagctgatgaacttgcgaagttgatgaatgagaatgagcaattgaaggctgttactgaggatctgagaaggaagtccagtgatgcagaaattgaatctctgcgagaagagtaccatcaaaaagtttctgctcttgagaggaaagtttatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="59645" stop="56374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59345" g_stop="58895" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58894" i_stop="57995" i_length="900">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57994" g_stop="57923" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="523" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57922" i_stop="56758" i_length="1165">
            <donor d_prob="0.654" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56757" g_stop="56683" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="598" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E417057" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59345" e_stop="58895"/>
          <exon e_start="57994" e_stop="57923"/>
          <exon e_start="56757" e_stop="56683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAGGTATGTCCATATGCTACTTTAATGGAAATTTATGCACCTTCTGCTCCTCAGCATCAGTGGAACATTTCTGAATCTACTGACGTTACTTGAGAATATGAATCTTTTGTTGTATGCACCTATAGTAGGCGAGTCCAATAATTCACGTTGTATTACCTAAGATTAGCTGAAATCTGAATCCCACTCATCCTCAATAATTTCTCCCAACTTGTGTGGTCATGGATAAAAGTTGCTTCAATGAGTTGATTTTGACTAAAAGTAGCTTCAATTAAAGAAGTTCTGATTTGAAGTGTGTGTGTCATTGACACATCCCATTGATATTGTCTTGTACTTCTCAAATGACATAGTTTACGTTCTTGAGGTCTCAAATGTCTGAACACATGGATATCTTTTCCATAGTCCGTGGATCCTTTCTGAAGTTGTGGAATCCGTTGGCAAGGATGTTGGTATACGCCTAAAGATGATTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCATTATTCCAAAGCCAATAAATATATTTAAGGATTCTGGGTGATTGGAACTAATTCTCCCATCATGTATGAACTTCGCAATATCTTCCTGTTATGCCTCAAACTTAGAGGGAAGCTTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCAAGATTATTCCAAAGACAATAAATATATTTAAGGATTTTGGGTGATTGGAACTAATTTCTTCCATTATGTATGAACTTCTCAATATCTTCCTGTCATGCCACAAACTTGAAAAAAAATTCAGTTGGTGTGTTAGACCCCTTATTTTCAGTTCTTGTTTATAAAATGATGAACACTCAACAAGATGACATGTCATTGTTTTTCCTCAGGCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGAGTAAGTTCTCATCATTTTGAAGTTCCTTTCGAGGCTGTTAATTCAATTTGTTGCTGTCCGCTAGTTTTTGAAATGGCATGAGTCAAAGACATACTATAGTTCCCATTGTTTCAGGATGAATTTACCATCTCATAAATTAGATTTCTAGTGTTGTTTTTCTGCTTGTTATTGCAGAACATTTCTTTCTCTTCTGCCCTTGCTTGCAATTTTCTTCTAGATAAGTTAATCTTGCATGTGAGCCAGATATTGTGTAAGCTTCTGTGCTGACTGGTCGAGTCATCTTAACTACCACCTAATTTGTTAAGCACTTTTTAATGAACATCATCAATAATCAGACTTCTCTTGACTAGATGCGTGTAGATCAGGAAGAATCGCTTCTGTTGCATAATTTCATATGACTCTCATCATTGATGATTTTGATTTAACTGCTTTCACATCAATACACGTTGCATTTTCTCTTATACAAATTCTAGCTTCTGTCCTGTTTGTTAGATGACTTGTGCTTCGTATGCTCTTCTATTCTCTCAGAACTGCTAGTTTCCTGTATCAATTTAAGTACAGAATGTTTCGGGGTGGCCCAGTGGTTTGGGCTTGGAATTTTTATGTTGGAGGTCTCAAGTGCGAAACCTCTTGCCAGCGAAAGCAAGGGGTTTGCCTTCAGGGTTGAGCTCGTCGCACCGGGCTTGGCTAGTGCGGGTTACCTCTCCTATGTTGTTTGCGAGCTATTGCATGTGGGTGGGGGTGGGGGGTGGGGGTGGGGGTTTACCCTGTGCGCACCTAAAGGATAGTGGCTGTGAGTTTCCCTTGTCATAAAAAAAAAAAGTTATCCCTGCAAGCAATTATTCTGTTGTTCATTTTATCTTCCTTTAGTATTAATATCATATGTGTAATTGGATCTTTATTGCTGCTGGGTGGGATCAGCGTAGCACGTGCCAATGGATGTGTGTTTTGTAATGGATAATGGATCGAAACTTTAGTTAACTCTTTTGTTAATTTTATTTAAATTGGTGAGTTCCAATGCACTTTTTAAAACTTTTTTCTAATTCCCCATCCCCACAGCGTTCCTCTTATGTGTACGTTAGGTTCATCTTTCATCCCTCATAATTCCCTTCTAAGTGAAACTCCACCAATATTATATCTCTTGCTTACACACTAATTTTTACAGAGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG</genome_strand>
        <mrna_strand>GGAGTCTCCTCCTGTTCAATCACAGGATGCATCAAATTACCCTGCAGACAGGGAACAGAAGAAAGAAGTCACCGTGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGTGAAGGTGAAAGTTCTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACAGATGAAGGTCTGAAGAGGCTATCTGATACGATTATGCCTGAAAATGAGTTGGTTAGTAGACCTGTTGAGGCTACCCAGCGAGGAAATGATCATGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAAGCTGATGAACTTGCGAAGTTGATGAATGAGAATGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGTCCAGTGATGCAGAAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E440289" ref_strand="+" ref_description="SGN-E440289 [cSTA-16-A20]">
      <seq>ggagtctcctcctgttcaatcacaggatgcatcaaattaccctgcagacagggaacagaagaaagaagtcaccgtggaatctccttcagctgaatcacgggatgcatcaagtgaccgagcagatagtggaagaccttctgtttcagattctgtaactgccagtgaaggtgaaagttctgaagagcattctaacaggagctttcttggtgaccagcacacagatgaaggtctgaagaggctatctgatacgattatgcctgaaaatgagttggttagtagacctgttgaggctacccagcgaggaaatgatcatgagactggtgtgaaagaacggttgagctccggaagcaactcttcagatgttaccaattcagtggttgaactggagaagctgaaaaaggaaatgaaaatgatggaaactgcattacaaggagctgctagacaagctcaagctaaagctgatgaacttgcgaagttgatgaatgaaaatgagcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="59645" stop="57647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59345" g_stop="58895" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58894" i_stop="57995" i_length="900">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57994" g_stop="57947" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="499" r_length="48" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E440289" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59345" e_stop="58895"/>
          <exon e_start="57994" e_stop="57947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAGGTATGTCCATATGCTACTTTAATGGAAATTTATGCACCTTCTGCTCCTCAGCATCAGTGGAACATTTCTGAATCTACTGACGTTACTTGAGAATATGAATCTTTTGTTGTATGCACCTATAGTAGGCGAGTCCAATAATTCACGTTGTATTACCTAAGATTAGCTGAAATCTGAATCCCACTCATCCTCAATAATTTCTCCCAACTTGTGTGGTCATGGATAAAAGTTGCTTCAATGAGTTGATTTTGACTAAAAGTAGCTTCAATTAAAGAAGTTCTGATTTGAAGTGTGTGTGTCATTGACACATCCCATTGATATTGTCTTGTACTTCTCAAATGACATAGTTTACGTTCTTGAGGTCTCAAATGTCTGAACACATGGATATCTTTTCCATAGTCCGTGGATCCTTTCTGAAGTTGTGGAATCCGTTGGCAAGGATGTTGGTATACGCCTAAAGATGATTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCATTATTCCAAAGCCAATAAATATATTTAAGGATTCTGGGTGATTGGAACTAATTCTCCCATCATGTATGAACTTCGCAATATCTTCCTGTTATGCCTCAAACTTAGAGGGAAGCTTGGACCGTGTAGCAGCTTCATACGTTTAATTGCAATTATCCCTTTATTATTATGCAGCAAGATTATTCCAAAGACAATAAATATATTTAAGGATTTTGGGTGATTGGAACTAATTTCTTCCATTATGTATGAACTTCTCAATATCTTCCTGTCATGCCACAAACTTGAAAAAAAATTCAGTTGGTGTGTTAGACCCCTTATTTTCAGTTCTTGTTTATAAAATGATGAACACTCAACAAGATGACATGTCATTGTTTTTCCTCAGGCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTG</genome_strand>
        <mrna_strand>GGAGTCTCCTCCTGTTCAATCACAGGATGCATCAAATTACCCTGCAGACAGGGAACAGAAGAAAGAAGTCACCGTGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGTGAAGGTGAAAGTTCTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACAGATGAAGGTCTGAAGAGGCTATCTGATACGATTATGCCTGAAAATGAGTTGGTTAGTAGACCTGTTGAGGCTACCCAGCGAGGAAATGATCATGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAAGCTGATGAACTTGCGAAGTTGATGAATGAAAATGAGCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E232136" ref_strand="+" ref_description="SGN-E232136 [cLEL-5-B15]">
      <seq>tttttttttttttttttcagcttctccagttcaaccactgaattggtaacatctgaagagttgcttccggagctcaaccgttctttcacaccagtctcctgatcatttcctcgctgggtagcctccacaggtatactaaccaactcattttcaggcataactgtatcagatagcttcttcagaccttcatcagtgtgctggtcaccaagaaagctcctgttagaatgctcttcaagactttcaccttcgctggcagttacagaatctgaaacagaaggtcttccactatctgctcggtcacttgatgcatcccgtgattcagctgaaggagattccatggtgacttctttcttctgttccctgtctgtagggtaatttgatgcatcctctaattgaacaggaggagattcctcagtgacttctttcttctgttccccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="58636" stop="59673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58935" g_stop="59373" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E232136" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58935" e_stop="59373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCATTTCCTTTTTCAGCTTCTCCAGTTCAACCACTGAATTGGTAACATCTGAAGAGTTGCTTCCGGAGCTCAACCGTTCTTTCACACCAGTCTCCTGATCATTTCCTCGCTGGGTAGCCTCCACAGGTATACTAACCAACTCATTTTCAGGCATAACTGTATCAGATAGCTTCTTCAGACCTTCATCAGTGTGCTGGTCACCAAGAAAGCTCCTGTTAGAATGCTCTTCAAGACTTTCACCTTCGCTGGCAGTTACAGAATCTGAAACAGAAGGTCTTCCACTATCTGCTCGGTCACTTGATGCATCCCGTGATTCAGCTGAAGGAGATTCCATGGTGACTTCTTTCTTCTGTTCCCTGTCTGTAGGGTAATTTGATGCATCCTCTAATTGAACAGGAGGAGATTCCTCAGTGACTTCTTTCTTCTGTTCCCCAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTCAGCTTCTCCAGTTCAACCACTGAATTGGTAACATCTGAAGAGTTGCTTCCGGAGCTCAACCGTTCTTTCACACCAGTCTCCTGATCATTTCCTCGCTGGGTAGCCTCCACAGGTATACTAACCAACTCATTTTCAGGCATAACTGTATCAGATAGCTTCTTCAGACCTTCATCAGTGTGCTGGTCACCAAGAAAGCTCCTGTTAGAATGCTCTTCAAGACTTTCACCTTCGCTGGCAGTTACAGAATCTGAAACAGAAGGTCTTCCACTATCTGCTCGGTCACTTGATGCATCCCGTGATTCAGCTGAAGGAGATTCCATGGTGACTTCTTTCTTCTGTTCCCTGTCTGTAGGGTAATTTGATGCATCCTCTAATTGAACAGGAGGAGATTCCTCAGTGACTTCTTTCTTCTGTTCCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E232636" ref_strand="+" ref_description="SGN-E232636 [cLEL-5-B15]">
      <seq>tttttttttttttttttcggcttctccagttcaaccactggattggtaacatctgaagagttgcttccggagctcaaccgttctttcacaccagtctcctgatcatttcctcgctgggtagcctccacaggtatactaaccaactcattttcaggcataactgtatcagatagcttcttcagaccttcatcagtgtgctggtcaccaagaaagctcctgttagaatgctcttcaagactttcaccttcgctggcagttacagaatctgaaacagaaggtcttccactatctgctcggtcacttgatgcatcccgtgattcagctgaaggagattccatggtgacttctttcttctgttccctgtctgtagggtaatttgatgcatcctctaattgaacaggaggagattcctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="58636" stop="59648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58935" g_stop="59348" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E232636" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58935" e_stop="59348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCATTTCCTTTTTCAGCTTCTCCAGTTCAACCACTGAATTGGTAACATCTGAAGAGTTGCTTCCGGAGCTCAACCGTTCTTTCACACCAGTCTCCTGATCATTTCCTCGCTGGGTAGCCTCCACAGGTATACTAACCAACTCATTTTCAGGCATAACTGTATCAGATAGCTTCTTCAGACCTTCATCAGTGTGCTGGTCACCAAGAAAGCTCCTGTTAGAATGCTCTTCAAGACTTTCACCTTCGCTGGCAGTTACAGAATCTGAAACAGAAGGTCTTCCACTATCTGCTCGGTCACTTGATGCATCCCGTGATTCAGCTGAAGGAGATTCCATGGTGACTTCTTTCTTCTGTTCCCTGTCTGTAGGGTAATTTGATGCATCCTCTAATTGAACAGGAGGAGATTCCTCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTCGGCTTCTCCAGTTCAACCACTGGATTGGTAACATCTGAAGAGTTGCTTCCGGAGCTCAACCGTTCTTTCACACCAGTCTCCTGATCATTTCCTCGCTGGGTAGCCTCCACAGGTATACTAACCAACTCATTTTCAGGCATAACTGTATCAGATAGCTTCTTCAGACCTTCATCAGTGTGCTGGTCACCAAGAAAGCTCCTGTTAGAATGCTCTTCAAGACTTTCACCTTCGCTGGCAGTTACAGAATCTGAAACAGAAGGTCTTCCACTATCTGCTCGGTCACTTGATGCATCCCGTGATTCAGCTGAAGGAGATTCCATGGTGACTTCTTTCTTCTGTTCCCTGTCTGTAGGGTAATTTGATGCATCCTCTAATTGAACAGGAGGAGATTCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E289371" ref_strand="+" ref_description="SGN-E289371 [cLET-3-A9]">
      <seq>gatatctgctgaagaagaaactgaggaggcaagagctgttgatgtccaactgaattcttctacggaaccaagttttgatcacgaggaacaaagaagcgtgtactgggccagatgaaagaaaagctgaaattaattcactggcagaagcatcgaaggtcaatgagcttgatcaggaaacatctccaggaatcctccaaaagaatattccagagcgagaatcatctgaaaacctcgagttggttgtttcccaatcatcaaatgctttatctcaaactgaagttggtatcccgctgcttgttgattcaaaggaaaatactggtaatgatggggaacagaagaaagaagtcactgaggaatctcctcctgttcaattagaggatgcatcaaattaccctacagacagggaacagaagaaagaagtcaccatggaatctccttcagctgaatcacgggatgcatcaagtgaccgagcagattggaagaccttctgtttcagattctgtaactgccagcgaaggtgaaagtcttgaagagcattctaacaggagctttcttggtgaccagcacactgatgaaggtctgaagaagctatctgatacagttatgcctgaaaatgagttggttagtatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="59996" stop="58763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59696" g_stop="59063" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E289371" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59696" e_stop="59063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGT-TACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCT</genome_strand>
        <mrna_strand>GATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCACGAGGAACAAAGAAGCGTGTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGAT--TGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E475428" ref_strand="+" ref_description="SGN-E475428 [cSTB-40-A21]">
      <seq>gaaaagctgaaattaattcactggcagaagcatcgaaggtcaatgagcatgatcaggaaacatctccaggaatcctccaaaagaatattccagagcgagaatcatctgaaaacctcgagttggttgcttcccaatcatcaaatgctttatctcaaactgaagttggtatcccgctgcttgttgattcacaggaaaataccggtaatgatggggaacagaagaaagaagtcactgaggagtctcctcctgttcaatcacaggatgcatcaaattaccctgcagacagggaacagaagaaagaagtcaccgtggaatctccttcagctgaatcacgggatgcatcaagtgaccgagcagatagtggaagaccttctgtttcagattctgtaactgccagtgaaggtgaaagttctgaagagcattctaacaggagctttcttggtgaccagcacacagatgaaggtctgaagaggctatctgatacgattatgcctgaaaatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="59880" stop="58777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59580" g_stop="59077" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E475428" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59580" e_stop="59077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGT</genome_strand>
        <mrna_strand>GAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCATGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGCTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCACAGGAAAATACCGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAGTCTCCTCCTGTTCAATCACAGGATGCATCAAATTACCCTGCAGACAGGGAACAGAAGAAAGAAGTCACCGTGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGTGAAGGTGAAAGTTCTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACAGATGAAGGTCTGAAGAGGCTATCTGATACGATTATGCCTGAAAATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E740102" ref_strand="+" ref_description="SGN-E740102 [LC20AD11]">
      <seq>cttttatcttgtgggcaatgcttcgattgcatgccagcttcagggttatggccttcaactacggataggagggccttatttgatcctgtcatgtcttttatggggcaaaaaagtgaggggactgctgaagaatctgtagagaaagctgagtcgtcaaagcccaccttgcccacaggggaagtagttgaagattcagctgagactacaactcgacgtggtgtggttcctaaagaaccaaaagaagaaacaacggacattattgaagaaactaaatcggttcaagaacctattgaagaagcaaaggatgttgatgcgaaaccaaatcaaatgatatctgctgaagaagaaactgaggaggcaagagctgttgatgtccaactgaattcttctacggaaccaagttttgatcaggaggaacaaagaagtgttactgggccagatgaaagaaaagctgaaattaattcactggcagaagcatcgaaggtcaatgagcttgatcaggaaacatctccaggaatcctccaaaagaatattccagagcgagaatcatctgaaaacctcgagttggttgtttcccaatcatcaaatgctttatctcaaactgaagttggtatcccgctgcttgttgattcaaaggaaaatactggtaatgatggggaacagaagaaagaagtcactgaggaatctcctcctgttcaattagaggatgcatcaaattaccctacagacagggaacagaagaaagaagtcaccatggaatctccttcagctgaatcacgggatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="60325" stop="58939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60025" g_stop="59239" g_length="787"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="787" r_length="787" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E740102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60025" e_stop="59239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCAT</genome_strand>
        <mrna_strand>CTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E544365" ref_strand="+" ref_description="SGN-E544365 [TUS-66-K14]">
      <seq>tgtggatgaaggagctttccatgtaatttgagctttggatcgagtcaaaaagatggcgtggtttggtgggaaacttgatttgacgaacttggatcttgccggtgccgtgaataagctcagtgagagtgtcaaaaacattgaaaaaaatttcgacactgcacttggtctcgaggagaaatctgagtctagtaacaatgaagcttcagggttatggccttcaactacggataggagggccttatttgatcctgtcatgtcttttatggggcaaaaaagtgaggggactgctgaagaatctgtagagaaagctgagtcgtcaaagcccaccttgcccacaggggaagtagttgaagattcagctgagactacaactcgacgtggtgtggttcctaaagaaccaaaagaagaaacaacggacattattgaagaaactaaatcggttcaagaacctattgaagaagcaaaggatgttgatgcgaaaccaaatcaaatgatatctgctgaagaagaaactgaggaggcaagagctgttgatgtccaactgaattcttctacggaaccaagttttgatcaggaggaacaaagaagtgttactgggccagatgaaagaaaagctgaaattattcactggcagaagcatcgaaagtcaatgagcttgatcaggaaacatctccaggaatcctcaaaagaatattccagagcgangatcatctgaaaacctcgagttggttgttttcccatcatcaaatgctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="62318" stop="59131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62197" g_stop="62194" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62193" i_stop="62013" i_length="181">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62012" g_stop="61817" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="200" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61816" i_stop="59989" i_length="1828">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.617" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59988" g_stop="59431" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="756" r_length="556" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E544365" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62197" e_stop="62194"/>
          <exon e_start="62012" e_stop="61817"/>
          <exon e_start="59988" e_stop="59431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGTATTAAAAAACTTCCAATCAATCCAATTTTCAATATCTTTTTTCTTTGTAACTTTCTGAATCGGAAATTATTGAATGATGGGATCTGATTGAACACAAAAACAATTTTGCTGTTATATGGATGTTGTTTATTGAAATTGGAATTTCTTAGGATTTTGACAATGTATGATTCATTTGATAGGATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAGGTATCTATTAGATCGTTATACTTTCTCAAAATTTTATCTCATACGTTAATGTTAATCCTCAATATTAGTTGGATTCAGCATGTCCGGACCAGCGTTGGCTGCTCGCCTAATTCCACTAGATACGTGCCACCTCCCACTGGATACAGATGCATATTTATTCCACTCTATTTATGAAAATTAGGTTTCTAACTAGAGTTTGTTTAAACTTACTTAGCGAACACTAATGTAAGTGTAACCTCAAGCAGATCATTGATCCTGGAAAGAATTTCATAGCACTTATTGGCTCTATAGAATTCTTGTATCTTTATACAATGGCGTGCTTGATGCTTTAGAAGCTGCCTAAGATCTCTCCGATGTATTATGACTTTTCTAATACTGCCCTTCATATTTGGTTGTTGCCCTTGTGAAAATTGAATCTGGTAAGGCCAAGAATGAAATGCATATTTTAGTATGTTTGAACTTCTTATTGCCTGCATGTTTGGGAATCAGTAGTCTATAACTCCTAACAGATTCGTGTCTGCTAGAAACACTGATTAATAAATGATGGTGGGATTACACAGTTCAAGTCTTGCAATATCCGAATATGTGAATGGTTCAGTGTAAATGCTTTCAACCCATATTTGACCCGCTAAATAACCATAACTGACTCATTTTTATACTGTTTAAAAATAGGTTGAACCCATATTTCACCCATTTTGAGTATCACCCACCCAACCTGTTCAAATAAGGACTGGTTGATGACAAAATGGGTTCATTTTGCCAACACTAGTTAGGAGTAAGCTCTGATGTGAGAGTAACAACGTCATGTCAGAGTAGGTTTGGGTGCCAACATATAGATCTTGGATTGCAAGACTAAGATAAGAGGTAATTACTGGCCTCTCGGAGTTCCAAAAAAAGGAAATTCAGAGATGAGCGAATGAGATTATATATGGGGATAATTTGGAGATATCAAGCCATTAGTTGTCTGGGGTGCCTCAATAATAAAGTGGTGATGTGAAATCTCAGCACTGTATTAACGATTGAATAGGGTGTATTAGTAATGCCGCTATTAGTAATGTTGAGATTATTTTGTATGCCATGTTTGATTTGGTGTTAAAAAAATAACATGCATTGCATATTTCTAAAATAAATTATTTGCTTACAAAAATATCATGCACAAACACAATGGGAAAGATGTTGAAAAGGTTTGGAGGGGCAGTTGTGTCTTTACCCATCCTAATGCATACATTAGAATCCCTTGCATTGCTAATACAATGGTTTCTTATGTATTAGTTATGCATAGGCCATAGCATAATGCCTAATAGAGTGTATAATTAATGCATTAGTTATACATAAGTTGAAAAAGTGTACCAAATAAGGTATTAATAATACATTAAGCTAATTGCATGCATTATTTTTCTAATGCACCTTAAGAACGACCCTATAGAGTGATAGACAATCTCTTGCCTGGCGGAGAGTGCAATAGCTTGGGAATGGAGTGACACTTTCTAACTTTGGTCTTAGAAGCTTCCAAGTATATGTATGGCATAAACTGATGGCATCTGTTAGTTACTTACACAGACACTTGCACATGTACACACACAAATATGTTTCGCGTATATTTGTGTGTGTTCCAACACCTTCATAAACTGATTTGAATGTCCTCCAAAAATGTTAACCGAATGTTGAATTTCTTTGCTGCTTGTCTTACCACATTCCATGCATTCATTTAAGCCTTCTTAAGTATATCAGATTGATGCATTTCTTAGGAAAGTCAAATTTTAGAGCTGACTGATTTATTTCAATGCTTCCCTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTAT</genome_strand>
        <mrna_strand>TGTG.....................................................................................................................................................................................GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATT-ATTCACTGGCAGAAGCATCGAAAGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCT-CAAAAGAATATTCCAGAGCGANGATCATCTGAAAACCTCGAGTTGGTTGTTTTCCCATCATCAAATGCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E585003" ref_strand="+" ref_description="SGN-E585003 [66720]">
      <seq>agacggtgacggtggacgctgaagttcaccgttcctgcaaatcgatttctttttcgcccttcccaaatcttttctttttattgctccgcttccaaggatgaaggagcttgccatgtgatttgaactttggatcgaggcaaaaagatggcgtggtttggtgggaaacttgatttggcgaacttggatcttgccggtgccgtgaataagctcagtgagagtgtcaaaaacattgaaaagaatttcgacacagcacttggtctcgaggagaaatctgagtctagtagcaatgaagcttcaggattatggccttcaaccacggacaggagggccttatttgatcctgtcatgtcttttatggggcaaaaaagtgaggatactgctgaagaatctgtagagaaagctgagtcgttaaagcccactttgcccacaagggaagtaggtgaagattcagctgagactacaactcgacgtgatgtggttcctaaagaatcaaaagaagaaacaagggacattattgaagaaactaaatcggttcaagaacctattgaagaagcaaaggatgttgatgcgaaaccaaatcaaatgatatctgctgaagaagaaactgaggaggcaagagctgttgatgtcaaactggactctgctatggaaacaagttttgatcgggaggaacaaagaagtgttactggaccagatgaaagaaaagctgaaattaattcactggcagaagcatcgaaggtcaatgagcatgatcaggaaacatctccaggaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="62602" stop="59205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62302" g_stop="62205" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62204" i_stop="62013" i_length="192">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62012" g_stop="61817" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="292" r_length="196" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61816" i_stop="59989" i_length="1828">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.617" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59988" g_stop="59505" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="776" r_length="484" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E585003" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62302" e_stop="62205"/>
          <exon e_start="62012" e_stop="61817"/>
          <exon e_start="59988" e_stop="59505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAGTTCCAAGTGTGGTATTAAAAAACTTCCAATCAATCCAATTTTCAATATCTTTTTTCTTTGTAACTTTCTGAATCGGAAATTATTGAATGATGGGATCTGATTGAACACAAAAACAATTTTGCTGTTATATGGATGTTGTTTATTGAAATTGGAATTTCTTAGGATTTTGACAATGTATGATTCATTTGATAGGATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAGGTATCTATTAGATCGTTATACTTTCTCAAAATTTTATCTCATACGTTAATGTTAATCCTCAATATTAGTTGGATTCAGCATGTCCGGACCAGCGTTGGCTGCTCGCCTAATTCCACTAGATACGTGCCACCTCCCACTGGATACAGATGCATATTTATTCCACTCTATTTATGAAAATTAGGTTTCTAACTAGAGTTTGTTTAAACTTACTTAGCGAACACTAATGTAAGTGTAACCTCAAGCAGATCATTGATCCTGGAAAGAATTTCATAGCACTTATTGGCTCTATAGAATTCTTGTATCTTTATACAATGGCGTGCTTGATGCTTTAGAAGCTGCCTAAGATCTCTCCGATGTATTATGACTTTTCTAATACTGCCCTTCATATTTGGTTGTTGCCCTTGTGAAAATTGAATCTGGTAAGGCCAAGAATGAAATGCATATTTTAGTATGTTTGAACTTCTTATTGCCTGCATGTTTGGGAATCAGTAGTCTATAACTCCTAACAGATTCGTGTCTGCTAGAAACACTGATTAATAAATGATGGTGGGATTACACAGTTCAAGTCTTGCAATATCCGAATATGTGAATGGTTCAGTGTAAATGCTTTCAACCCATATTTGACCCGCTAAATAACCATAACTGACTCATTTTTATACTGTTTAAAAATAGGTTGAACCCATATTTCACCCATTTTGAGTATCACCCACCCAACCTGTTCAAATAAGGACTGGTTGATGACAAAATGGGTTCATTTTGCCAACACTAGTTAGGAGTAAGCTCTGATGTGAGAGTAACAACGTCATGTCAGAGTAGGTTTGGGTGCCAACATATAGATCTTGGATTGCAAGACTAAGATAAGAGGTAATTACTGGCCTCTCGGAGTTCCAAAAAAAGGAAATTCAGAGATGAGCGAATGAGATTATATATGGGGATAATTTGGAGATATCAAGCCATTAGTTGTCTGGGGTGCCTCAATAATAAAGTGGTGATGTGAAATCTCAGCACTGTATTAACGATTGAATAGGGTGTATTAGTAATGCCGCTATTAGTAATGTTGAGATTATTTTGTATGCCATGTTTGATTTGGTGTTAAAAAAATAACATGCATTGCATATTTCTAAAATAAATTATTTGCTTACAAAAATATCATGCACAAACACAATGGGAAAGATGTTGAAAAGGTTTGGAGGGGCAGTTGTGTCTTTACCCATCCTAATGCATACATTAGAATCCCTTGCATTGCTAATACAATGGTTTCTTATGTATTAGTTATGCATAGGCCATAGCATAATGCCTAATAGAGTGTATAATTAATGCATTAGTTATACATAAGTTGAAAAAGTGTACCAAATAAGGTATTAATAATACATTAAGCTAATTGCATGCATTATTTTTCTAATGCACCTTAAGAACGACCCTATAGAGTGATAGACAATCTCTTGCCTGGCGGAGAGTGCAATAGCTTGGGAATGGAGTGACACTTTCTAACTTTGGTCTTAGAAGCTTCCAAGTATATGTATGGCATAAACTGATGGCATCTGTTAGTTACTTACACAGACACTTGCACATGTACACACACAAATATGTTTCGCGTATATTTGTGTGTGTTCCAACACCTTCATAAACTGATTTGAATGTCCTCCAAAAATGTTAACCGAATGTTGAATTTCTTTGCTGCTTGTCTTACCACATTCCATGCATTCATTTAAGCCTTCTTAAGTATATCAGATTGATGCATTTCTTAGGAAAGTCAAATTTTAGAGCTGACTGATTTATTTCAATGCTTCCCTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCT</genome_strand>
        <mrna_strand>AGACGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAAATCGATTTCTTTTTCGCCCTTCCC-AAATCTTTTC-TTTTTATTGCTCCGCTTCCAAG................................................................................................................................................................................................GATGAAGGAGCTTGCCATGTGATTTGAACTTTGGATCGAGGCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGGCGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAGAATTTCGACACAGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAGCAATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGGATTATGGCCTTCAACCACGGACAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGATACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTTAAAGCCCACTTTGCCCACAAGGGAAGTAGGTGAAGATTCAGCTGAGACTACAACTCGACGTGATGTGGTTCCTAAAGAATCAAAAGAAGAAACAAGGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCAAACTGGACTCTGCTATGGAAACAAGTTTTGATCGGGAGGAACAAAGAAGTGTTACTGGACCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCATGATCAGGAAACATCTCCAGGAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E736160" ref_strand="+" ref_description="SGN-E736160 [LC04CD01]">
      <seq>catatggtgacggtggacgctgaagttcaccgttcctgcagatcgatttctttttcgcccttcccaaaatcttttcatttttattgctccgcttccaagttccaagtgtggatgaaggagctttccatgtaatttgagctttggatcgagtcaaaaagatggcgtggtttggtgggaaacttgatttgacgaacttggatcttgccggtgccgtgaataagctcagtgagagtgtcaaaaacattgaaaaaaatttcgacactgcacttggtctcgaggagaaatctgagtctagtaacaatgaagcttcagggttatggccttcaactacggataggagggccttatttgatcctgtcatgtcttttatggggcaaaaaagtgaggggactgctgaagaatctgtagagaaagctgagtcgtcaaagcccaccttgcccacaggggaagtagttgaagattcagctgagactacaactcgacgtggtgtggttcctaaagaaccaaaagaagaaacaacggacattattgaagaaactaaatcggttcaagaacctattgaagaagcaaaggatgttgatgcgaaaccaaatcaaatgatatctgctgaagaagaaactgaggaggcaagagctgttgatgtccaactgaattcttctacggaaccaagttttgatcaggaggaacaaaaaagtgttactgggccaaatgaaagaaaagctgaaattaattcactggcagaagcatcgaaagtcaatgagcttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="62602" stop="59227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62303" g_stop="62194" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62193" i_stop="62013" i_length="181">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62012" g_stop="61817" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="306" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61816" i_stop="59989" i_length="1828">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.617" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59988" g_stop="59527" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="768" r_length="462" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E736160" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62303" e_stop="62194"/>
          <exon e_start="62012" e_stop="61817"/>
          <exon e_start="59988" e_stop="59527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAGTTCCAAGTGTGGTATTAAAAAACTTCCAATCAATCCAATTTTCAATATCTTTTTTCTTTGTAACTTTCTGAATCGGAAATTATTGAATGATGGGATCTGATTGAACACAAAAACAATTTTGCTGTTATATGGATGTTGTTTATTGAAATTGGAATTTCTTAGGATTTTGACAATGTATGATTCATTTGATAGGATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAGGTATCTATTAGATCGTTATACTTTCTCAAAATTTTATCTCATACGTTAATGTTAATCCTCAATATTAGTTGGATTCAGCATGTCCGGACCAGCGTTGGCTGCTCGCCTAATTCCACTAGATACGTGCCACCTCCCACTGGATACAGATGCATATTTATTCCACTCTATTTATGAAAATTAGGTTTCTAACTAGAGTTTGTTTAAACTTACTTAGCGAACACTAATGTAAGTGTAACCTCAAGCAGATCATTGATCCTGGAAAGAATTTCATAGCACTTATTGGCTCTATAGAATTCTTGTATCTTTATACAATGGCGTGCTTGATGCTTTAGAAGCTGCCTAAGATCTCTCCGATGTATTATGACTTTTCTAATACTGCCCTTCATATTTGGTTGTTGCCCTTGTGAAAATTGAATCTGGTAAGGCCAAGAATGAAATGCATATTTTAGTATGTTTGAACTTCTTATTGCCTGCATGTTTGGGAATCAGTAGTCTATAACTCCTAACAGATTCGTGTCTGCTAGAAACACTGATTAATAAATGATGGTGGGATTACACAGTTCAAGTCTTGCAATATCCGAATATGTGAATGGTTCAGTGTAAATGCTTTCAACCCATATTTGACCCGCTAAATAACCATAACTGACTCATTTTTATACTGTTTAAAAATAGGTTGAACCCATATTTCACCCATTTTGAGTATCACCCACCCAACCTGTTCAAATAAGGACTGGTTGATGACAAAATGGGTTCATTTTGCCAACACTAGTTAGGAGTAAGCTCTGATGTGAGAGTAACAACGTCATGTCAGAGTAGGTTTGGGTGCCAACATATAGATCTTGGATTGCAAGACTAAGATAAGAGGTAATTACTGGCCTCTCGGAGTTCCAAAAAAAGGAAATTCAGAGATGAGCGAATGAGATTATATATGGGGATAATTTGGAGATATCAAGCCATTAGTTGTCTGGGGTGCCTCAATAATAAAGTGGTGATGTGAAATCTCAGCACTGTATTAACGATTGAATAGGGTGTATTAGTAATGCCGCTATTAGTAATGTTGAGATTATTTTGTATGCCATGTTTGATTTGGTGTTAAAAAAATAACATGCATTGCATATTTCTAAAATAAATTATTTGCTTACAAAAATATCATGCACAAACACAATGGGAAAGATGTTGAAAAGGTTTGGAGGGGCAGTTGTGTCTTTACCCATCCTAATGCATACATTAGAATCCCTTGCATTGCTAATACAATGGTTTCTTATGTATTAGTTATGCATAGGCCATAGCATAATGCCTAATAGAGTGTATAATTAATGCATTAGTTATACATAAGTTGAAAAAGTGTACCAAATAAGGTATTAATAATACATTAAGCTAATTGCATGCATTATTTTTCTAATGCACCTTAAGAACGACCCTATAGAGTGATAGACAATCTCTTGCCTGGCGGAGAGTGCAATAGCTTGGGAATGGAGTGACACTTTCTAACTTTGGTCTTAGAAGCTTCCAAGTATATGTATGGCATAAACTGATGGCATCTGTTAGTTACTTACACAGACACTTGCACATGTACACACACAAATATGTTTCGCGTATATTTGTGTGTGTTCCAACACCTTCATAAACTGATTTGAATGTCCTCCAAAAATGTTAACCGAATGTTGAATTTCTTTGCTGCTTGTCTTACCACATTCCATGCATTCATTTAAGCCTTCTTAAGTATATCAGATTGATGCATTTCTTAGGAAAGTCAAATTTTAGAGCTGACTGATTTATTTCAATGCTTCCCTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATC</genome_strand>
        <mrna_strand>CATATGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAGTTCCAAGTGTG.....................................................................................................................................................................................GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAAAAGTGTTACTGGGCCAAATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAAGTCAATGAGCTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E544372" ref_strand="+" ref_description="SGN-E544372 [TUS-66-K18]">
      <seq>tgtggatgaaggagctttccatgtaatttgagctttggatcgagtgaaaaagatggcgtggtttggtgggaaacttgatttgacgaacttggatcttgccggtgccgtgaataatctcagtgagagtgtcaaaaacattgaaaaaaatttcgacactgcacttggtctcgaggagaaatctgagtctagtaacaatgaagcttcagggttatggccttcaactacggataggagggccttatttgatcctgtcctgtcttttatggggcaacaaagtgaggggactgctgaagaatctgtagagaaagctgattcgtcaaagcccaccttgcccgcaggggaagtagttgaagattcagctgagactacaactcgacgtggtgtggttcctaaagaaccaaaagaagaaacaacggacattattgaagaaactaaatcggttcaagaacctattgaagaagcaaatgatgttgatgcaaaaccaaatcaaatgatatctgctgaagaagaaactgacgaggcaagagctgttgatgtccaactgaattcttctgcggaaccaagttttgatcatgaggaacaaagaagtgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="62318" stop="59293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62197" g_stop="62194" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62193" i_stop="62013" i_length="181">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62012" g_stop="61817" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="200" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61816" i_stop="59989" i_length="1828">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.617" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59988" g_stop="59593" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="596" r_length="396" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E544372" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62197" e_stop="62194"/>
          <exon e_start="62012" e_stop="61817"/>
          <exon e_start="59988" e_stop="59593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGTATTAAAAAACTTCCAATCAATCCAATTTTCAATATCTTTTTTCTTTGTAACTTTCTGAATCGGAAATTATTGAATGATGGGATCTGATTGAACACAAAAACAATTTTGCTGTTATATGGATGTTGTTTATTGAAATTGGAATTTCTTAGGATTTTGACAATGTATGATTCATTTGATAGGATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAGGTATCTATTAGATCGTTATACTTTCTCAAAATTTTATCTCATACGTTAATGTTAATCCTCAATATTAGTTGGATTCAGCATGTCCGGACCAGCGTTGGCTGCTCGCCTAATTCCACTAGATACGTGCCACCTCCCACTGGATACAGATGCATATTTATTCCACTCTATTTATGAAAATTAGGTTTCTAACTAGAGTTTGTTTAAACTTACTTAGCGAACACTAATGTAAGTGTAACCTCAAGCAGATCATTGATCCTGGAAAGAATTTCATAGCACTTATTGGCTCTATAGAATTCTTGTATCTTTATACAATGGCGTGCTTGATGCTTTAGAAGCTGCCTAAGATCTCTCCGATGTATTATGACTTTTCTAATACTGCCCTTCATATTTGGTTGTTGCCCTTGTGAAAATTGAATCTGGTAAGGCCAAGAATGAAATGCATATTTTAGTATGTTTGAACTTCTTATTGCCTGCATGTTTGGGAATCAGTAGTCTATAACTCCTAACAGATTCGTGTCTGCTAGAAACACTGATTAATAAATGATGGTGGGATTACACAGTTCAAGTCTTGCAATATCCGAATATGTGAATGGTTCAGTGTAAATGCTTTCAACCCATATTTGACCCGCTAAATAACCATAACTGACTCATTTTTATACTGTTTAAAAATAGGTTGAACCCATATTTCACCCATTTTGAGTATCACCCACCCAACCTGTTCAAATAAGGACTGGTTGATGACAAAATGGGTTCATTTTGCCAACACTAGTTAGGAGTAAGCTCTGATGTGAGAGTAACAACGTCATGTCAGAGTAGGTTTGGGTGCCAACATATAGATCTTGGATTGCAAGACTAAGATAAGAGGTAATTACTGGCCTCTCGGAGTTCCAAAAAAAGGAAATTCAGAGATGAGCGAATGAGATTATATATGGGGATAATTTGGAGATATCAAGCCATTAGTTGTCTGGGGTGCCTCAATAATAAAGTGGTGATGTGAAATCTCAGCACTGTATTAACGATTGAATAGGGTGTATTAGTAATGCCGCTATTAGTAATGTTGAGATTATTTTGTATGCCATGTTTGATTTGGTGTTAAAAAAATAACATGCATTGCATATTTCTAAAATAAATTATTTGCTTACAAAAATATCATGCACAAACACAATGGGAAAGATGTTGAAAAGGTTTGGAGGGGCAGTTGTGTCTTTACCCATCCTAATGCATACATTAGAATCCCTTGCATTGCTAATACAATGGTTTCTTATGTATTAGTTATGCATAGGCCATAGCATAATGCCTAATAGAGTGTATAATTAATGCATTAGTTATACATAAGTTGAAAAAGTGTACCAAATAAGGTATTAATAATACATTAAGCTAATTGCATGCATTATTTTTCTAATGCACCTTAAGAACGACCCTATAGAGTGATAGACAATCTCTTGCCTGGCGGAGAGTGCAATAGCTTGGGAATGGAGTGACACTTTCTAACTTTGGTCTTAGAAGCTTCCAAGTATATGTATGGCATAAACTGATGGCATCTGTTAGTTACTTACACAGACACTTGCACATGTACACACACAAATATGTTTCGCGTATATTTGTGTGTGTTCCAACACCTTCATAAACTGATTTGAATGTCCTCCAAAAATGTTAACCGAATGTTGAATTTCTTTGCTGCTTGTCTTACCACATTCCATGCATTCATTTAAGCCTTCTTAAGTATATCAGATTGATGCATTTCTTAGGAAAGTCAAATTTTAGAGCTGACTGATTTATTTCAATGCTTCCCTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTG</genome_strand>
        <mrna_strand>TGTG.....................................................................................................................................................................................GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTGAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAATCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCCTGTCTTTTATGGGGCAACAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGATTCGTCAAAGCCCACCTTGCCCGCAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAATGATGTTGATGCAAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGACGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTGCGGAACCAAGTTTTGATCATGAGGAACAAAGAAGTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E418250" ref_strand="+" ref_description="SGN-E418250 [STM-27-K13]">
      <seq>tgacggtggacgctgaagttcaccgttcctgcagatcgatttctttttcgcccgtcccaaatcttttctttttattgctccgcttccaaggatgaaggagcttgccatgtgatttgaactttggatcgagtcaaaaagatggcgtggtttggtgggaaacttgatttggcgaacttggatcttgccggtgccgtgaataagctcagtgagagtgtcaaaaacatcgaaaagaatttcgacacagcacttggtctcgaggagaaatctgagtctagtagcaatgaagcttcaggattatggccttcaaccacggacaggagggccttatttgatcctgtcatgtcttttatggggcaaaaaaagtgaggatactgctgaagaatctgtagagaaagctgagtcgtcaaagcccactttgcccacaagggaagtaggtgaagattcagctgagactacaactcgacgtgatgtggttcctaaagaaccaaaagaagaaacaagggacattattgaagaaactaaatcggttcaagaacctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="62596" stop="59434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62296" g_stop="62205" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62204" i_stop="62013" i_length="192">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62012" g_stop="61817" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="286" r_length="196" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61816" i_stop="59989" i_length="1828">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.617" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59988" g_stop="59734" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="542" r_length="256" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E418250" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62296" e_stop="62205"/>
          <exon e_start="62012" e_stop="61817"/>
          <exon e_start="59988" e_stop="59734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAGTTCCAAGTGTGGTATTAAAAAACTTCCAATCAATCCAATTTTCAATATCTTTTTTCTTTGTAACTTTCTGAATCGGAAATTATTGAATGATGGGATCTGATTGAACACAAAAACAATTTTGCTGTTATATGGATGTTGTTTATTGAAATTGGAATTTCTTAGGATTTTGACAATGTATGATTCATTTGATAGGATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAGGTATCTATTAGATCGTTATACTTTCTCAAAATTTTATCTCATACGTTAATGTTAATCCTCAATATTAGTTGGATTCAGCATGTCCGGACCAGCGTTGGCTGCTCGCCTAATTCCACTAGATACGTGCCACCTCCCACTGGATACAGATGCATATTTATTCCACTCTATTTATGAAAATTAGGTTTCTAACTAGAGTTTGTTTAAACTTACTTAGCGAACACTAATGTAAGTGTAACCTCAAGCAGATCATTGATCCTGGAAAGAATTTCATAGCACTTATTGGCTCTATAGAATTCTTGTATCTTTATACAATGGCGTGCTTGATGCTTTAGAAGCTGCCTAAGATCTCTCCGATGTATTATGACTTTTCTAATACTGCCCTTCATATTTGGTTGTTGCCCTTGTGAAAATTGAATCTGGTAAGGCCAAGAATGAAATGCATATTTTAGTATGTTTGAACTTCTTATTGCCTGCATGTTTGGGAATCAGTAGTCTATAACTCCTAACAGATTCGTGTCTGCTAGAAACACTGATTAATAAATGATGGTGGGATTACACAGTTCAAGTCTTGCAATATCCGAATATGTGAATGGTTCAGTGTAAATGCTTTCAACCCATATTTGACCCGCTAAATAACCATAACTGACTCATTTTTATACTGTTTAAAAATAGGTTGAACCCATATTTCACCCATTTTGAGTATCACCCACCCAACCTGTTCAAATAAGGACTGGTTGATGACAAAATGGGTTCATTTTGCCAACACTAGTTAGGAGTAAGCTCTGATGTGAGAGTAACAACGTCATGTCAGAGTAGGTTTGGGTGCCAACATATAGATCTTGGATTGCAAGACTAAGATAAGAGGTAATTACTGGCCTCTCGGAGTTCCAAAAAAAGGAAATTCAGAGATGAGCGAATGAGATTATATATGGGGATAATTTGGAGATATCAAGCCATTAGTTGTCTGGGGTGCCTCAATAATAAAGTGGTGATGTGAAATCTCAGCACTGTATTAACGATTGAATAGGGTGTATTAGTAATGCCGCTATTAGTAATGTTGAGATTATTTTGTATGCCATGTTTGATTTGGTGTTAAAAAAATAACATGCATTGCATATTTCTAAAATAAATTATTTGCTTACAAAAATATCATGCACAAACACAATGGGAAAGATGTTGAAAAGGTTTGGAGGGGCAGTTGTGTCTTTACCCATCCTAATGCATACATTAGAATCCCTTGCATTGCTAATACAATGGTTTCTTATGTATTAGTTATGCATAGGCCATAGCATAATGCCTAATAGAGTGTATAATTAATGCATTAGTTATACATAAGTTGAAAAAGTGTACCAAATAAGGTATTAATAATACATTAAGCTAATTGCATGCATTATTTTTCTAATGCACCTTAAGAACGACCCTATAGAGTGATAGACAATCTCTTGCCTGGCGGAGAGTGCAATAGCTTGGGAATGGAGTGACACTTTCTAACTTTGGTCTTAGAAGCTTCCAAGTATATGTATGGCATAAACTGATGGCATCTGTTAGTTACTTACACAGACACTTGCACATGTACACACACAAATATGTTTCGCGTATATTTGTGTGTGTTCCAACACCTTCATAAACTGATTTGAATGTCCTCCAAAAATGTTAACCGAATGTTGAATTTCTTTGCTGCTTGTCTTACCACATTCCATGCATTCATTTAAGCCTTCTTAAGTATATCAGATTGATGCATTTCTTAGGAAAGTCAAATTTTAGAGCTGACTGATTTATTTCAATGCTTCCCTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGC-AAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTG</genome_strand>
        <mrna_strand>TGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCGTCCC-AAATCTTTTC-TTTTTATTGCTCCGCTTCCAAG................................................................................................................................................................................................GATGAAGGAGCTTGCCATGTGATTTGAACTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGGCGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATCGAAAAGAATTTCGACACAGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAGCAATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGGATTATGGCCTTCAACCACGGACAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAAGTGAGGATACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACTTTGCCCACAAGGGAAGTAGGTGAAGATTCAGCTGAGACTACAACTCGACGTGATGTGGTTCCTAAAGAACCAAAAGAAGAAACAAGGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E306222" ref_strand="+" ref_description="SGN-E306222 [cLEY-13-N3]">
      <seq>gtggatgaaggagctttccatgtaatttgagctttggatcgagtcaaaaagatggcgtggtttggtgggaaacttgatttgacgaacttggatcttgccggtgccgtgaataagctcagtgagagtgtcaaaaacattgaaaaaaatttcgacactgcacttggtctcgaggagaaatctgagtctagtaacaatgaagcttcagggttatggccttcaactacggataggagggccttatttgatcctgtcatgtcttttatggggcaaaaaagtgaggggactgctgaagaatctgtagagaaagctgagtcgtcaaagcccaccttgcccacaggggaagtagttgaagattcagctgagactacaactcgacgtggtgtggttcctaaagaaccaaaagaagaaacaacggacattattgaagaaactaaatcggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="62313" stop="59446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62196" g_stop="62194" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62193" i_stop="62013" i_length="181">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62012" g_stop="61817" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="199" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61816" i_stop="59989" i_length="1828">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.617" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59988" g_stop="59746" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="442" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E306222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62196" e_stop="62194"/>
          <exon e_start="62012" e_stop="61817"/>
          <exon e_start="59988" e_stop="59746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTATTAAAAAACTTCCAATCAATCCAATTTTCAATATCTTTTTTCTTTGTAACTTTCTGAATCGGAAATTATTGAATGATGGGATCTGATTGAACACAAAAACAATTTTGCTGTTATATGGATGTTGTTTATTGAAATTGGAATTTCTTAGGATTTTGACAATGTATGATTCATTTGATAGGATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAGGTATCTATTAGATCGTTATACTTTCTCAAAATTTTATCTCATACGTTAATGTTAATCCTCAATATTAGTTGGATTCAGCATGTCCGGACCAGCGTTGGCTGCTCGCCTAATTCCACTAGATACGTGCCACCTCCCACTGGATACAGATGCATATTTATTCCACTCTATTTATGAAAATTAGGTTTCTAACTAGAGTTTGTTTAAACTTACTTAGCGAACACTAATGTAAGTGTAACCTCAAGCAGATCATTGATCCTGGAAAGAATTTCATAGCACTTATTGGCTCTATAGAATTCTTGTATCTTTATACAATGGCGTGCTTGATGCTTTAGAAGCTGCCTAAGATCTCTCCGATGTATTATGACTTTTCTAATACTGCCCTTCATATTTGGTTGTTGCCCTTGTGAAAATTGAATCTGGTAAGGCCAAGAATGAAATGCATATTTTAGTATGTTTGAACTTCTTATTGCCTGCATGTTTGGGAATCAGTAGTCTATAACTCCTAACAGATTCGTGTCTGCTAGAAACACTGATTAATAAATGATGGTGGGATTACACAGTTCAAGTCTTGCAATATCCGAATATGTGAATGGTTCAGTGTAAATGCTTTCAACCCATATTTGACCCGCTAAATAACCATAACTGACTCATTTTTATACTGTTTAAAAATAGGTTGAACCCATATTTCACCCATTTTGAGTATCACCCACCCAACCTGTTCAAATAAGGACTGGTTGATGACAAAATGGGTTCATTTTGCCAACACTAGTTAGGAGTAAGCTCTGATGTGAGAGTAACAACGTCATGTCAGAGTAGGTTTGGGTGCCAACATATAGATCTTGGATTGCAAGACTAAGATAAGAGGTAATTACTGGCCTCTCGGAGTTCCAAAAAAAGGAAATTCAGAGATGAGCGAATGAGATTATATATGGGGATAATTTGGAGATATCAAGCCATTAGTTGTCTGGGGTGCCTCAATAATAAAGTGGTGATGTGAAATCTCAGCACTGTATTAACGATTGAATAGGGTGTATTAGTAATGCCGCTATTAGTAATGTTGAGATTATTTTGTATGCCATGTTTGATTTGGTGTTAAAAAAATAACATGCATTGCATATTTCTAAAATAAATTATTTGCTTACAAAAATATCATGCACAAACACAATGGGAAAGATGTTGAAAAGGTTTGGAGGGGCAGTTGTGTCTTTACCCATCCTAATGCATACATTAGAATCCCTTGCATTGCTAATACAATGGTTTCTTATGTATTAGTTATGCATAGGCCATAGCATAATGCCTAATAGAGTGTATAATTAATGCATTAGTTATACATAAGTTGAAAAAGTGTACCAAATAAGGTATTAATAATACATTAAGCTAATTGCATGCATTATTTTTCTAATGCACCTTAAGAACGACCCTATAGAGTGATAGACAATCTCTTGCCTGGCGGAGAGTGCAATAGCTTGGGAATGGAGTGACACTTTCTAACTTTGGTCTTAGAAGCTTCCAAGTATATGTATGGCATAAACTGATGGCATCTGTTAGTTACTTACACAGACACTTGCACATGTACACACACAAATATGTTTCGCGTATATTTGTGTGTGTTCCAACACCTTCATAAACTGATTTGAATGTCCTCCAAAAATGTTAACCGAATGTTGAATTTCTTTGCTGCTTGTCTTACCACATTCCATGCATTCATTTAAGCCTTCTTAAGTATATCAGATTGATGCATTTCTTAGGAAAGTCAAATTTTAGAGCTGACTGATTTATTTCAATGCTTCCCTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTC</genome_strand>
        <mrna_strand>GTG.....................................................................................................................................................................................GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E720801" ref_strand="+" ref_description="SGN-E720801 [FC11DE12]">
      <seq>aatcggccgaattccatggggatccgatggacaaaatacaaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccaacattttttttcctcatatactgcttcttacatctataatttgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66835" stop="11129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66525" g_stop="66396" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="162" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="257" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="344" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64769" g_stop="64707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="407" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="445" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64195" g_stop="63985" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="656" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63984" i_stop="62457" i_length="1528">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62456" g_stop="62401" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="712" r_length="56" r_score="0.607"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E720801" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66525" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="63985"/>
          <exon e_start="62456" e_stop="62401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTTCTGTCTAGTTAGATTTTGTTTATCCTAGTTCATATTGAAATATGTTTTCTCAGTTCTACTTTAATTTGATTTTTTAATATTGTGTAAATATAGGTATTACTGTTACATATTTTCGCTAGTGACGTTGAGTTATTGGGTACACTCGAGACAAGTTGCAAAAAATAGTGGTTAAAAATCGAAAGTACTTCAAAATTACATTTAGGTGTTGGATATCCTATATTTTAGGATGGGTTTATTTTCACATGCAACTTGCAATATTTTCTTTTCCGGGTTAATACTTATATCGCTAACACAAAACGTCTGAAGCTCTTAATCAAGTATTATTTTAAGTAATAAAAATTGTATACGACAATGTCTTTTCATTCTTAATTAACATGAATAAAGTGAGCGCATCGTATTTTCGTACAGTGATATTGAATTATTGATACCCTCAAGACAAGTTGCAAAAAGTAGTAATTAAAAATATGGATTCAAAATTACATTTAGGTATTGGATATTCTGTATTTTAGGACGGATGTATTTTCACATGCAGTTTGTAGTATTTTCTTTTTCTGCACGTGATGAATTTATATCAATTATAAACAAGAATTAGGTTTGTTCATGGCTATGGTCAAAAAATCAAAACGAATAATAATTCAAATCAACTCGATTAAAAAAATTGATATTTGGTTTGATTTGGTTAGGTCTTGTTTTTAAATTTTGAAAACTGATATATTTGGTTTGATTTTGGTTTTACTAAAAAAAACAAATTGAACCGATAAATTAGATATATAAATTTTATAATTAATTATATATTATTTATCAATAAATATAAAGAATTTGTTAAATTTTAAGTTATTTAAGTCGTTAACTTTACAATTTTCTCAAGCCTAACACTTAAATTTTTGCCCAATTACAATTCTAAGTCCAATTCCATCAAACTTATTACCTACCAACCATTCATAATATACTCACACACTTTTTCTTAATTTAATAACTTTATTCGTGTAATGATAACTCTTATATTATTTAATTGAACCAATAATAGCTTTATATGGATAGTTCATGTATTAGATGTTTTTTTTCAACTAAGATATGTATGTCCTCAAAAAGTTATATCACTTTCAAACTGGAAAAATCAAAAAAACTGAACCAAGTCATCAATAACAAATCGATGGTTATTTTTTCATTTGATTTGATTGAATTTTAAAAATTTAAAAAATTTACCATATTAATTTGATTTTGATTTTAGTTAATAACCAATTTAAACCGGACCACGAACACCCTAACAAAGATGGTAATCAATTCAATATATATTTAATTTTTATTAAAAAAAGGAACTATTTTTATGGTATAGTCTAGTAATAATAGTTGATTAATCATAAAAAAAAAAAAATAACCATGTACGAATACAAAAA</genome_strand>
        <mrna_strand>AAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E548361" ref_strand="-" ref_description="SGN-E548361 [TUS-60-H23]">
      <seq>tttccattggacaaaatacaaagttcaaattctcagagggcttcaatggtagtagttaagctgcatcttcttccgcccgccatcaggggcagacaaacccttttgggaactgttaacacttctacacttttggtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttcggggctgcttcaaattttgggggggcaatggacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttggtatacagataccttttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatccagttcatgttgtacttcggtatccaagcatcaccaaaatgctgaatcattttccagatgaaatgatatcttcagaaatgagccaacattttttttcctcatatactgcttcttacatctataatttgttaatatgccttttgccaactggaagtagagtgctttccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66837" stop="11133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66537" g_stop="66396" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="237" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="324" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64769" g_stop="64707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="387" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="425" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64195" g_stop="63950" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="671" r_length="246" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63949" i_stop="62442" i_length="1508">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.68"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62441" g_stop="62402" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="711" r_length="40" r_score="0.675"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E548361" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548361" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66537" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="63950"/>
          <exon e_start="62441" e_stop="62402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTTCTGTCTAGTTAGATTTTGTTTATCCTAGTTCATATTGAAATATGTTTTCTCAGTTCTACTTTAATTTGATTTTTTAATATTGTGTAAATATAGGTATTACTGTTACATATTTTCGCTAGTGACGTTGAGTTATTGGGTACACTCGAGACAAGTTGCAAAAAATAGTGGTTAAAAATCGAAAGTACTTCAAAATTACATTTAGGTGTTGGATATCCTATATTTTAGGATGGGTTTATTTTCACATGCAACTTGCAATATTTTCTTTTCCGGGTTAATACTTATATCGCTAACACAAAACGTCTGAAGCTCTTAATCAAGTATTATTTTAAGTAATAAAAATTGTATACGACAATGTCTTTTCATTCTTAATTAACATGAATAAAGTGAGCGCATCGTATTTTCGTACAGTGATATTGAATTATTGATACCCTCAAGACAAGTTGCAAAAAGTAGTAATTAAAAATATGGATTCAAAATTACATTTAGGTATTGGATATTCTGTATTTTAGGACGGATGTATTTTCACATGCAGTTTGTAGTATTTTCTTTTTCTGCACGTGATGAATTTATATCAATTATAAACAAGAATTAGGTTTGTTCATGGCTATGGTCAAAAAATCAAAACGAATAATAATTCAAATCAACTCGATTAAAAAAATTGATATTTGGTTTGATTTGGTTAGGTCTTGTTTTTAAATTTTGAAAACTGATATATTTGGTTTGATTTTGGTTTTACTAAAAAAAACAAATTGAACCGATAAATTAGATATATAAATTTTATAATTAATTATATATTATTTATCAATAAATATAAAGAATTTGTTAAATTTTAAGTTATTTAAGTCGTTAACTTTACAATTTTCTCAAGCCTAACACTTAAATTTTTGCCCAATTACAATTCTAAGTCCAATTCCATCAAACTTATTACCTACCAACCATTCATAATATACTCACACACTTTTTCTTAATTTAATAACTTTATTCGTGTAATGATAACTCTTATATTATTTAATTGAACCAATAATAGCTTTATATGGATAGTTCATGTATTAGATGTTTTTTTTCAACTAAGATATGTATGTCCTCAAAAAGTTATATCACTTTCAAACTGGAAAAATCAAAAAAACTGAACCAAGTCATCAATAACAAATCGATGGTTATTTTTTCATTTGATTTGATTGAATTTTAAAAATTTAAAAAATTTACCATATTAATTTGATTTTGATTTTAGTTAATAACCAATTTAAACCGGACCACGAACACCCTAACAAAGATGGTAATCAATTCAATATATATTTAATTTTTATTAAAAAAAGGAACTATTTTTATGGTATAGTCTAGTAATAATAGTTGATTAATCATAAAAAAAAAAAAATAACCATGTACGAATACAAAA</genome_strand>
        <mrna_strand>TTTCCATTGGACAAAATACAAAGTTCAAATTCTCAGAGGGCTTCAATGGTAGTAGTTAAGCTGCATCTTCTTCCGCCCGCCATCAGGGGCAGACAAACCCTTTTGGGAACTGTTAACACTTCTACACTTTTGGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCGGGGCTGCTTCAAATTTTGGGGGG........................................................................................................................................................................................................................................................................................................................................................................GCAATGGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTGGTATACAGATACCTTTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATCCAGTTCATGTTGTACTTCGGTATCCAAGCATCACCAAAATGCTGAATCATTTTCCAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCCCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E718421" ref_strand="+" ref_description="SGN-E718421 [FC04CE01]">
      <seq>gggcgaatggcggccaatcggccgaattgatttgacaaaatacaaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccaacattttttttcctcaaaaaaaaaaaaaaaaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66832" stop="11134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66532" g_stop="66396" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="166" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="261" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="348" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64769" g_stop="64707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="411" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="449" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64195" g_stop="64018" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="627" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64017" i_stop="62438" i_length="1580">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62437" g_stop="62418" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="647" r_length="20" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E718421" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66532" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="64018"/>
          <exon e_start="62437" e_stop="62418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTTCTGTCTAGTTAGATTTTGTTTATCCTAGTTCATATTGAAATATGTTTTCTCAGTTCTACTTTAATTTGATTTTTTAATATTGTGTAAATATAGGTATTACTGTTACATATTTTCGCTAGTGACGTTGAGTTATTGGGTACACTCGAGACAAGTTGCAAAAAATAGTGGTTAAAAATCGAAAGTACTTCAAAATTACATTTAGGTGTTGGATATCCTATATTTTAGGATGGGTTTATTTTCACATGCAACTTGCAATATTTTCTTTTCCGGGTTAATACTTATATCGCTAACACAAAACGTCTGAAGCTCTTAATCAAGTATTATTTTAAGTAATAAAAATTGTATACGACAATGTCTTTTCATTCTTAATTAACATGAATAAAGTGAGCGCATCGTATTTTCGTACAGTGATATTGAATTATTGATACCCTCAAGACAAGTTGCAAAAAGTAGTAATTAAAAATATGGATTCAAAATTACATTTAGGTATTGGATATTCTGTATTTTAGGACGGATGTATTTTCACATGCAGTTTGTAGTATTTTCTTTTTCTGCACGTGATGAATTTATATCAATTATAAACAAGAATTAGGTTTGTTCATGGCTATGGTCAAAAAATCAAAACGAATAATAATTCAAATCAACTCGATTAAAAAAATTGATATTTGGTTTGATTTGGTTAGGTCTTGTTTTTAAATTTTGAAAACTGATATATTTGGTTTGATTTTGGTTTTACTAAAAAAAACAAATTGAACCGATAAATTAGATATATAAATTTTATAATTAATTATATATTATTTATCAATAAATATAAAGAATTTGTTAAATTTTAAGTTATTTAAGTCGTTAACTTTACAATTTTCTCAAGCCTAACACTTAAATTTTTGCCCAATTACAATTCTAAGTCCAATTCCATCAAACTTATTACCTACCAACCATTCATAATATACTCACACACTTTTTCTTAATTTAATAACTTTATTCGTGTAATGATAACTCTTATATTATTTAATTGAACCAATAATAGCTTTATATGGATAGTTCATGTATTAGATGTTTTTTTTCAACTAAGATATGTATGTCCTCAAAAAGTTATATCACTTTCAAACTGGAAAAATCAAAAAAACTGAACCAAGTCATCAATAACAAATCGATGGTTATTTTTTCATTTGATTTGATTGAATTTTAAAAATTTAAAAAATTTACCATATTAATTTGATTTTGATTTTAGTTAATAACCAATTTAAACCGGACCACGAACACCCTAACAAAGATGGTAATCAATTCAATATATATTTAATTTTTATTAAAAAAAGGAACTATTTTTATGGTATAGTCTAGTAATAATAGTTGATTAATCATAAAAAAAAAAAAATAACC</genome_strand>
        <mrna_strand>ATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E397324" ref_strand="-" ref_description="SGN-E397324 [TUS-45-B19]">
      <seq>catcacgggcagacaaacccttttcggaactgttaacacttgtacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggctgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66757" stop="52418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66457" g_stop="66396" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="157" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="244" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64769" g_stop="64707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="307" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="345" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64195" g_stop="64033" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="506" r_length="161" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64032" i_stop="62436" i_length="1597">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62435" g_stop="62420" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="522" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E397324" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397324" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66457" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="64033"/>
          <exon e_start="62435" e_stop="62420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTTCTGTCTAGTTAGATTTTGTTTATCCTAGTTCATATTGAAATATGTTTTCTCAGTTCTACTTTAATTTGATTTTTTAATATTGTGTAAATATAGGTATTACTGTTACATATTTTCGCTAGTGACGTTGAGTTATTGGGTACACTCGAGACAAGTTGCAAAAAATAGTGGTTAAAAATCGAAAGTACTTCAAAATTACATTTAGGTGTTGGATATCCTATATTTTAGGATGGGTTTATTTTCACATGCAACTTGCAATATTTTCTTTTCCGGGTTAATACTTATATCGCTAACACAAAACGTCTGAAGCTCTTAATCAAGTATTATTTTAAGTAATAAAAATTGTATACGACAATGTCTTTTCATTCTTAATTAACATGAATAAAGTGAGCGCATCGTATTTTCGTACAGTGATATTGAATTATTGATACCCTCAAGACAAGTTGCAAAAAGTAGTAATTAAAAATATGGATTCAAAATTACATTTAGGTATTGGATATTCTGTATTTTAGGACGGATGTATTTTCACATGCAGTTTGTAGTATTTTCTTTTTCTGCACGTGATGAATTTATATCAATTATAAACAAGAATTAGGTTTGTTCATGGCTATGGTCAAAAAATCAAAACGAATAATAATTCAAATCAACTCGATTAAAAAAATTGATATTTGGTTTGATTTGGTTAGGTCTTGTTTTTAAATTTTGAAAACTGATATATTTGGTTTGATTTTGGTTTTACTAAAAAAAACAAATTGAACCGATAAATTAGATATATAAATTTTATAATTAATTATATATTATTTATCAATAAATATAAAGAATTTGTTAAATTTTAAGTTATTTAAGTCGTTAACTTTACAATTTTCTCAAGCCTAACACTTAAATTTTTGCCCAATTACAATTCTAAGTCCAATTCCATCAAACTTATTACCTACCAACCATTCATAATATACTCACACACTTTTTCTTAATTTAATAACTTTATTCGTGTAATGATAACTCTTATATTATTTAATTGAACCAATAATAGCTTTATATGGATAGTTCATGTATTAGATGTTTTTTTTCAACTAAGATATGTATGTCCTCAAAAAGTTATATCACTTTCAAACTGGAAAAATCAAAAAAACTGAACCAAGTCATCAATAACAAATCGATGGTTATTTTTTCATTTGATTTGATTGAATTTTAAAAATTTAAAAAATTTACCATATTAATTTGATTTTGATTTTAGTTAATAACCAATTTAAACCGGACCACGAACACCCTAACAAAGATGGTAATCAATTCAATATATATTTAATTTTTATTAAAAAAAGGAACTATTTTTATGGTATAGTCTAGTAATAATAGTTGATTAATCATAAAAAAAAAAAAATAA</genome_strand>
        <mrna_strand>CATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTGTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGC--TGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E260617" ref_strand="+" ref_description="SGN-E260617 [cLEG-54-C7]">
      <seq>aaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccaacaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaannnnaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66818" stop="11129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66518" g_stop="66396" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="218" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="305" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64769" g_stop="64707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="368" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="406" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64195" g_stop="64033" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="569" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64032" i_stop="63186" i_length="847">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63185" g_stop="63132" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="623" r_length="54" r_score="0.574"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E260617" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66518" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="64033"/>
          <exon e_start="63185" e_stop="63132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTTCTGTCTAGTTAGATTTTGTTTATCCTAGTTCATATTGAAATATGTTTTCTCAGTTCTACTTTAATTTGATTTTTTAATATTGTGTAAATATAGGTATTACTGTTACATATTTTCGCTAGTGACGTTGAGTTATTGGGTACACTCGAGACAAGTTGCAAAAAATAGTGGTTAAAAATCGAAAGTACTTCAAAATTACATTTAGGTGTTGGATATCCTATATTTTAGGATGGGTTTATTTTCACATGCAACTTGCAATATTTTCTTTTCCGGGTTAATACTTATATCGCTAACACAAAACGTCTGAAGCTCTTAATCAAGTATTATTTTAAGTAATAAAAATTGTATACGACAATGTCTTTTCATTCTTAATTAACATGAATAAAGTGAGCGCATCGTATTTTCGTACAGTGATATTGAATTATTGATACCCTCAAGACAAGTTGCAAAAAGTAGTAATTAAAAATATGGATTCAAAATTACATTTAGGTATTGGATATTCTGTATTTTAGGACGGATGTATTTTCACATGCAGTTTGTAGTATTTTCTTTTTCTGCACGTGATGAATTTATATCAATTATAAACAAGAATTAGGTTTGTTCATGGCTATGGTCAAAAAATCAAAACGAATAATAATTCAAATCAACTCGATTAAAAAAATTGATATT</genome_strand>
        <mrna_strand>AAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAANAAAAAAAAAAAAAAAAAAAAAAAAANNNNAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E287330" ref_strand="+" ref_description="SGN-E287330 [cLES-15-J11]">
      <seq>aaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccaacattttttttcctcatatactgcttcttacatctataatttgttaatatgccttttgccaactggaagtagagtgctttcaccatccctctctcaatttcctatggttttctactgtctgccatagtcagactgatccaacgaaaactctttagcaagtttgagttcacgtatataaaccaaaagtgggtaccctaatttgtttatgatttgatatttagtatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="65070" stop="63508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64782" g_stop="64707" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="114" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64195" g_stop="63798" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="512" r_length="398" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E287330" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64782" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="63798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTT</genome_strand>
        <mrna_strand>AAATTTTGTGGCGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E339479" ref_strand="+" ref_description="SGN-E339479 [cTOF-4-L16]">
      <seq>cccaatctgctcccaatagcttcaactttctatatcctccatcactgcttaattgttgtttccatttgacaaaatacaaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccaacattttttttcctcatatactgcttcttacatctataatttgttaatatgccttttgccaactggaagtagagtgctttcaccatccctctctcaatttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66895" stop="63632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66595" g_stop="66396" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="295" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="382" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64769" g_stop="64707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="445" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="483" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64195" g_stop="63932" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="747" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E339479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66595" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="63932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCT</genome_strand>
        <mrna_strand>CCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E434922" ref_strand="+" ref_description="SGN-E434922 [STM-60-P9]">
      <seq>ttccatttaacaaaaaacgaagttgaaaatttgaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcactggtagacaaacccttttcggaactgttcacacttctactcttttcgtccccaccaaaagacaaggtcacctggccatcacagcaaaggctaccagtgaaagttctgaatccttatcctccccaagtgtagttaagtcagtaaagaatgtttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggcttcttcgaattttgtcgcggcaatcgacagcctgcctctcattccaggtgtgtttgaattcatcgggatattgttttcttcttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttggggcagtgatctgaaaataataggatgatacaattcatgttgtacttctgtatccaagcattaccaaaatgctgaatcattttatagatgaaatgatatcttcagaaatgagcaacattttttttcctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66827" stop="63715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66514" g_stop="66396" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="149" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="244" r_length="95" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="331" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64769" g_stop="64707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="394" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="432" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64195" g_stop="64011" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="616" r_length="184" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E434922" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66514" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="64011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGC</genome_strand>
        <mrna_strand>TTGAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACTGGTAGACAAACCCTTTTCGGAACTGTTCACACTTCTACTCTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACCAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTAGTTAAGTCAGTAAAGAATGTT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTTCTTCGAATTTTGTCGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTCATCGGGATATTGTTTTCTTCT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTGGGGCAGTGATCTGAAAATAATAGGATGATACAATTCATGTTGTACTTCTGTATCCAAGCATTACCAAAATGCTGAATCATTTTATAGATGAAATGATATCTTCAGAAATGAG-CAACATTTTTTTTCCTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E409494" ref_strand="+" ref_description="SGN-E409494 [PPI-14-A10]">
      <seq>ttccatttaacaaaaaacgaagttgaaaatttgaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcactggtagacaaacccttttcggaactgttcacacttctactcttttcgtccccaccaaaagacaaggtcacctggccatcacagcaaaggctaccagtgaaagttctgaatccttatcctccccaagtgtagttaagtcagtaaagaatgtttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggcttcttcgaattttgtcgcggcaatcgacagcctgcctctcattccaggtgtgtttgaattcatcgggatattgttttcttcttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatncaataaatcatatcagatatcttggggcagtgatctgaaaataataggatgatacaattcatggtgtacttctgtatccaagcattaccaaatgctggatccttttatagatgaaatgatatcttcagaaatgagcaacattttttttcctccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66827" stop="63715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66514" g_stop="66396" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="149" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="244" r_length="95" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="331" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64769" g_stop="64707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="394" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="432" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64195" g_stop="64020" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="606" r_length="174" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E409494" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66514" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="64020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGAT-CAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTC</genome_strand>
        <mrna_strand>TTGAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACTGGTAGACAAACCCTTTTCGGAACTGTTCACACTTCTACTCTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACCAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTAGTTAAGTCAGTAAAGAATGTT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTTCTTCGAATTTTGTCGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTCATCGGGATATTGTTTTCTTCT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATNCAATAAATC-ATATCAGATATCTTGGGGCAGTGATCTGAAAATAATAGGATGATACAATTCATGGTGTACTTCTGTATCCAAGCATTACC-AAATGCTGGATCCTTTTATAGATGAAATGATATCTTCAGAAATGAG-CAACATTTTTTTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E434923" ref_strand="-" ref_description="SGN-E434923 [STM-60-P9]">
      <seq>gttccatttaacaaaaaacgaagttgaaaatttgaaattctcagatggcttcaatcgtagtagntaagctgcatcctcctccgcccgccatcantggtagacaaacccttttcggaactgttcacacttctactcttttcgtccccaccaaaagacaaggtcacctggccatcacagcaaaggctaccagtgaaagttctgaatccttatcctccccaagtgtagttaagtcagtaaagaatgtttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggcttcttcgaattttgtcgcggcaatcgacagcctgcctctcattccaggtgtgtttgaattcatcgggatattgttttcttcttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttggggcagtgatctgaaaataataggatgatacaattcatgttgtacttctgtatccaagcattaccaaaatgctgaatcattttatagatgaaatgatatcttcagaaatgagcaacatttttttcctcaaaaaaaagaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66827" stop="63715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66514" g_stop="66396" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="150" r_length="119" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="245" r_length="95" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="332" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64769" g_stop="64707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="395" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="433" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64195" g_stop="64020" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="607" r_length="174" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="608" polyA_stop="625"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E434923" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434923" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66514" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="64020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTC</genome_strand>
        <mrna_strand>TTGAAATTCTCAGATGGCTTCAATCGTAGTAGNTAAGCTGCATCCTCCTCCGCCCGCCATCANTGGTAGACAAACCCTTTTCGGAACTGTTCACACTTCTACTCTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACCAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTAGTTAAGTCAGTAAAGAATGTT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTTCTTCGAATTTTGTCGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTCATCGGGATATTGTTTTCTTCT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTGGGGCAGTGATCTGAAAATAATAGGATGATACAATTCATGTTGTACTTCTGTATCCAAGCATTACCAAAATGCTGAATCATTTTATAGATGAAATGATATCTTCAGAAATGAG-CAACA-TTTTTTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E284845" ref_strand="+" ref_description="SGN-E284845 [cLER-19-E8]">
      <seq>aagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtcgcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccacctnaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="65973" stop="63733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65673" g_stop="65580" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="181" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64769" g_stop="64707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="244" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="282" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64195" g_stop="64033" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="445" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="458"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E284845" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65673" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="64033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAAC</genome_strand>
        <mrna_strand>AAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTCGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E291874" ref_strand="+" ref_description="SGN-E291874 [cLET-7-N19]">
      <seq>ttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggctgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66814" stop="63740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66514" g_stop="66396" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="214" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="301" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64769" g_stop="64707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="364" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="402" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64195" g_stop="64040" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="556" r_length="154" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E291874" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66514" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="64040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATG</genome_strand>
        <mrna_strand>TTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGC--TGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E319449" ref_strand="+" ref_description="SGN-E319449 [cTOB-15-J10]">
      <seq>ccaatagcttcaactttctatatcctccatcactgcttaattgttgtttccatttgacaaaatacaaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66883" stop="63860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66583" g_stop="66396" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="283" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="370" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64769" g_stop="64707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="433" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="471" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64195" g_stop="64160" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="507" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E319449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66583" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="64160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATC</genome_strand>
        <mrna_strand>CCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E397325" ref_strand="+" ref_description="SGN-E397325 [TUS-45-B19]">
      <seq>gttcaaattctcagatgtcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcttttttctgcctctcattccaggtgtgtttgaatttatcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66815" stop="64422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66515" g_stop="66396" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="215" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="302" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64769" g_stop="64722" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="350" r_length="48" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E397325" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66515" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGG</genome_strand>
        <mrna_strand>GTTCAAATTCTCAGATGTCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCTTTTTTCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E319553" ref_strand="+" ref_description="SGN-E319553 [cTOB-15-H11]">
      <seq>tggctgcgtgttcttcactgcccaatctgctcccaatagctccaactttctatatcctccatcactgcttaattgctgtttccatttgacaaaatacaaagttcaaattctcacatggcttccatcctattagctaatctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggcactgtcaacacttctacactttcctggcccaccacaagacaaggtcacctggccatcacagcaaaggctactattgaaaggtctgaatccttatcctccccaagtgttgttaaatcactaaagaatatttgggacaaccctgaataccggattgctgtaattgggttgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66915" stop="64874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66615" g_stop="66396" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="315" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65174" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="358" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E319553" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66615" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAA</genome_strand>
        <mrna_strand>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTCCAACTTTCTATATCCTCCATCACTGCTTAATTGCTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCACATGGCTTCCATCCTATTAGCTAATCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGCACTGTCAACACTTCTACACTTTCCTGGCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTATTGAAAGGTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCACTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAATACCGGATTGCTGTAATTGGGTTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E328456" ref_strand="+" ref_description="SGN-E328456 [cTOC-21-J2]">
      <seq>tcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccagtaagttttcttctgcaacattcacaataacagtttcagtctgcaattagtcttattgaggtataattttgaggtattgtgttgcaatttcataggtgaaaatccgatcagtagtaataccgggcttgtaacatcgatgatgctacttttcactagtttttttttttaaatgactgtagtgtctgggcctcgattaaattacctgttgtttttgctacatttcactagatagtttaaagactagtatggatgtttctcgttatgtagtgtgtttagtccatagagaggacttaacaagaagagttggagatactcaatgaacattcatcatttactagcaaaagaaatgtttctattccgtatttgttactatagatagaaagtaaatgagcctgtgagcgaggctatcctgaatttgttattgacttttggctactatggaatggaggtggatgaacctgtaaatagaacattcatgaaagttcgtttgatatgcggttacagaaacattaatactgctaaaccaggtaaaattgactttgaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66769" stop="65549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66469" g_stop="65849" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E328456" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66469" e_stop="65849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGC</genome_strand>
        <mrna_strand>TCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAAGTTCGTTTGATATGCGGTTACAGAAACATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E327264" ref_strand="+" ref_description="SGN-E327264 [cTOC-19-K12]">
      <seq>tcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccagtaagttttcttctgcaacattcacaataacagtttcagtctgcaattagtcttattgaggtataattttgaggtattgtgttgcaatttcataggtgaaaatccgatcagtagtaataccgggcttgtaacatcgatgatgctacttttcactagtttttttttttaaatgactgtagtgtctgggcctccattaaattacctgttgtttttgctacatttcactagatagtttaaagactagtatggatgtttctcgttatgtagtgtgtttagtccatagagaggacttaacaagaagagttggagatactcaatgaacattcatcatttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66769" stop="65759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66469" g_stop="66059" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E327264" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66469" e_stop="66059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTA</genome_strand>
        <mrna_strand>TCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCCATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E245463" ref_strand="+" ref_description="SGN-E245463 [cLEF-43-I21]">
      <seq>gcaggaattcggcacgagtctgctcccaatagcttcaactttctatatcctccatcactgcttaattgttgtttccatttgacaaaatacaaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccctttcggaactgttaacacttctacacttttcgtccccaccagtaagttttcttctgcaacattcacaataacagtttcagtctgcaattagtcttattgaggtataattttgaggtattgtgttgcaatttcataggtgaaaatccgatcagtagtaataccgggcttgtaacatcgatgatgctacttttcactagtttttttttttaaatgactgtagtgtctgggcctcgattaaattacctgttgtttttgctacatttcactagatagtttaaagactagtatggatgtttctcgttatgtagtgtgtttagtccatagagaggacttaacaagaagagttggagatactcaatgaacattcatcatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66898" stop="65760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66590" g_stop="66060" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="549" r_length="531" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E245463" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66590" e_stop="66060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACT</genome_strand>
        <mrna_strand>TCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCCTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E207264" ref_strand="+" ref_description="SGN-E207264 [cLEC-30-C19]">
      <seq>gccggtcttctgattcccacattcggcttttgctcttattattgttgtggcgtatgtggctgcgtgttcttcactgcccaatctgctcccaatagcttcaactttctatatcctccatcactgcttaattgttgtttccatttgacaaaatacaaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccagtaagttttcttctgcaacattcacaataacagtttcagtctgcaattagtcttattgaggtataattttgaggtattgtgttgcaatttcataggtgaaaatccgatcagtagtaataccgggcttgtaacatcgatgatgctacttttcactagtttttttttttaaatgactgtagtgtctgggcctcgattaaattacctgttgtttttgctacatttcactagatagtttaaagactagtatggatgtttctcgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66971" stop="65833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66671" g_stop="66133" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E207264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66671" e_stop="66133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTCTTCTGATTCCCACATTCGGCTTTTGCTCTTATTATTGTTGTGGCGTATGTGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTAT</genome_strand>
        <mrna_strand>GCCGGTCTTCTGATTCCCACATTCGGCTTTTGCTCTTATTATTGTTGTGGCGTATGTGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E292672" ref_strand="+" ref_description="SGN-E292672 [cLET-11-I4]">
      <seq>aaaaccataacatattcacaatcacatcattttctgagccacaggtaatttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaattctttaccttcattttgttattgatgtatcatctatataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75230" stop="77066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75530" g_stop="75735" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="333" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76766" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="571" r_length="238" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E292672" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75530" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCATAACATATTCACAATCACATCATTTTCTGAGCCACAGGTAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAA</genome_strand>
        <mrna_strand>AAAACCATAACATATTCACAATCACATCATTTTCTGAGCCACAGGTAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAA-TTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E372486" ref_strand="-" ref_description="SGN-E372486 [TUS-32-E24]">
      <seq>gtaatttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatttaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcaaagcattgctttcgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75274" stop="77153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75574" g_stop="75735" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="289" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76853" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="615" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E372486" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372486" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75574" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>GTAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATTTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E294093" ref_strand="+" ref_description="SGN-E294093 [cLET-13-G16]">
      <seq>taatttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcanacctctgttacaacaagataaatcttctggaaagttcaaagcattgctttcgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75275" stop="77153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75575" g_stop="75735" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="288" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76853" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="614" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="615" polyA_stop="624"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E294093" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75575" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCANACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E372487" ref_strand="+" ref_description="SGN-E372487 [TUS-32-E24]">
      <seq>taatttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcanagcattgctttcgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75275" stop="77153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75575" g_stop="75735" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="288" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76853" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="614" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E372487" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75575" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCANAGCATTGCTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E292881" ref_strand="+" ref_description="SGN-E292881 [cLET-11-F19]">
      <seq>taatttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcaaagcattgctttcgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75275" stop="77153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75575" g_stop="75735" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="288" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76853" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="614" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="615" polyA_stop="624"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E292881" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75575" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E283004" ref_strand="+" ref_description="SGN-E283004 [cLER-17-O4]">
      <seq>taatttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatactttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgcaccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttgcaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75275" stop="77062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75575" g_stop="75735" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="288" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76762" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="523" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E283004" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75575" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTAT</genome_strand>
        <mrna_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATACTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCACCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTGCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E298478" ref_strand="+" ref_description="SGN-E298478 [cLET-41-M19]">
      <seq>taatttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgctgctcaagttcttgatattgggaggaggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75275" stop="76956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75575" g_stop="75735" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="288" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76656" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="417" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E298478" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75575" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATC</genome_strand>
        <mrna_strand>TAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGCTGCTCAAGTTCTTGATATTGGGAGGAGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E734959" ref_strand="+" ref_description="SGN-E734959 [LB14AC01]">
      <seq>actttctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcaaagcattgctttcgaaaaanaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75278" stop="77153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75577" g_stop="75735" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="286" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76853" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="612" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="613" polyA_stop="636"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E734959" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75577" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>ACTTTCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E339920" ref_strand="+" ref_description="SGN-E339920 [cTOF-3-N19]">
      <seq>tttcctagtctgaagcacagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaatcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcatatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaagagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattctggtattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctgagacctctgttacaacaagataaatcttctggaaagttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75278" stop="77139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75578" g_stop="75735" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="285" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76839" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="597" r_length="312" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E339920" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75578" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAA</genome_strand>
        <mrna_strand>TTTCCTAGTCTGAAGCACAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAATCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCATATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAAGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTCTGGTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTGAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E296229" ref_strand="+" ref_description="SGN-E296229 [cLET-24-D11]">
      <seq>ttcctagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggnnnaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75279" stop="77129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75579" g_stop="75735" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="284" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76838" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="595" r_length="311" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E296229" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75579" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAA</genome_strand>
        <mrna_strand>TTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGNNNAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E457703" ref_strand="+" ref_description="SGN-E457703 [cPRO-3-B1]">
      <seq>cctagtctgaaacagagttcaataatggcgtctatggcaactcttactgcagtgcagcccaccagtagtgtcaagggcctagccggaagctccattgctggaactaaactaaatgttagatcatctcgcctcaatttgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatactttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgcaccatcaccctacaactcccttcagaacaagttctttgagacatttgctgctcctttcacaaagagagggctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaagggatatcctaccaatcaagaaagggccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatccaaaatttctttaccttcattttgtaattgatggatcatcttcatctatataacagcttgtaagtgtacattgaagcttacctcagacctctgttacaacaagataaatcttctggaaagtttgaagccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75281" stop="77141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75581" g_stop="75735" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="282" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.956" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76841" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="603" r_length="321" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="618"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E457703" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75581" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAAT-CAAAATTTCTTTACCTTCATTTTGTTATTGAT-G-T-A---TCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGC</genome_strand>
        <mrna_strand>CCTAGTCTGAAACAGAGTTCAATAATGGCGTCTATGGCAACTCTTACTGCAGTGCAGCCCACCAGTAGTGTCAAGGGCCTAGCCGGAAGCTCCATTGCTGGAACTAAACTAAATGTTAGATCATCTCGCCTCAATTTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATACTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCACCATCACCCTACAACTCCCTTCAG....................................................................................................................................................................................AACAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGGCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAAGGGATATCCTACCAATCAAGAAAGGGCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCCAAAATTTCTTTACCTTCATTTTGTAATTGATGGATCATCTTCATCTATATAACAGCTTGTAAGTGTACATTGAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E429665" ref_strand="+" ref_description="SGN-E429665 [STM-52-O6]">
      <seq>cctagtctgaaacagagttcaataatggcgtctatggcaactcttactgcagtgcagcccaccagtagtgtcaagggcctagccggaagctccattgctggaactaaactaaatgttagatcatctcgcctcaatttgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatactttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgcaccatcaccctacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggggatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatccaaaatttctttaccttcattttgtaattgatgtatcatcttcatctatataacagcttgtaagtgtacattgaagcttacctcagacctctgttacaacaagataaatcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75281" stop="77128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75581" g_stop="75735" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="282" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76828" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="590" r_length="308" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E429665" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75581" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAAT-CAAAATTTCTTTACCTTCATTTTGTTATTGATGTA------TCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTG</genome_strand>
        <mrna_strand>CCTAGTCTGAAACAGAGTTCAATAATGGCGTCTATGGCAACTCTTACTGCAGTGCAGCCCACCAGTAGTGTCAAGGGCCTAGCCGGAAGCTCCATTGCTGGAACTAAACTAAATGTTAGATCATCTCGCCTCAATTTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATACTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCACCATCACCCTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGGGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCCAAAATTTCTTTACCTTCATTTTGTAATTGATGTATCATCTTCATCTATATAACAGCTTGTAAGTGTACATTGAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E346566" ref_strand="+" ref_description="SGN-E346566 [cTOF-28-B9]">
      <seq>tagtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgntacaacaagataaatcttctggaaaggtcaaagcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75283" stop="77142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75583" g_stop="75735" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="280" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76841" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="594" r_length="314" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="606"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E346566" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75583" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGC</genome_strand>
        <mrna_strand>TAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGNTACAACAAGATAAATCTTCTGGAAAGGTCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E739408" ref_strand="+" ref_description="SGN-E739408 [LC17BD04]">
      <seq>ctctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcaaagcattgctttcgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75286" stop="77153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75585" g_stop="75735" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="278" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76853" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="604" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="614"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E739408" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75585" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>CTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E739031" ref_strand="+" ref_description="SGN-E739031 [LC15DE06]">
      <seq>gtctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcaaagcattgctttcgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75285" stop="77153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75585" g_stop="75735" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="278" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76853" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="604" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="614"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E739031" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75585" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>GTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E343905" ref_strand="+" ref_description="SGN-E343905 [cTOF-12-F22]">
      <seq>tctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75286" stop="77132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75586" g_stop="75735" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="277" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76838" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="588" r_length="311" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E343905" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75586" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAA</genome_strand>
        <mrna_strand>TCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E346614" ref_strand="+" ref_description="SGN-E346614 [cTOF-28-F12]">
      <seq>tctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagantaatcttctgggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75286" stop="77132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75586" g_stop="75735" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="277" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76832" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="582" r_length="305" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="583" polyA_stop="596"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E346614" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75586" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAA</genome_strand>
        <mrna_strand>TCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGANTAATCTTCTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E734456" ref_strand="+" ref_description="SGN-E734456 [LB12CH05]">
      <seq>ctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75287" stop="77132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75587" g_stop="75735" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="276" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76843" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="592" r_length="316" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E734456" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75587" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCAT</genome_strand>
        <mrna_strand>CTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E290601" ref_strand="+" ref_description="SGN-E290601 [cLES-20-P5]">
      <seq>ctgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75287" stop="76647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75587" g_stop="75735" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="276" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76542" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="291" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E290601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75587" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAG</genome_strand>
        <mrna_strand>CTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E287884" ref_strand="+" ref_description="SGN-E287884 [cLES-19-D9]">
      <seq>tgaagcagagcccaataatggcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75288" stop="77011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75588" g_stop="75735" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="275" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76711" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="459" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E287884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75588" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGC</genome_strand>
        <mrna_strand>TGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E429666" ref_strand="-" ref_description="SGN-E429666 [STM-52-O6]">
      <seq>gaaacagagttcaataatggcgtctatggcaactcttactgcagtgcagcccaccagtagtgtcaagggcctagccggaagctccattgctggaactaaactaaatgttagatcatctcgcctcaatttgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatactttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgcaccatcaccctacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggggatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatccaaaatttctttaccttcattttgtaattgatgtatcatcttcatctatataacagcttgtaagtgtacattgaagcttacctcagacctctgttacaacaagataaatcttctggaaagttgaagcaaaaaaaaaaaaagaaaaaaaaaactcgagggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75289" stop="77142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75589" g_stop="75735" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="274" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="0.94"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76832" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="586" r_length="312" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="618"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E429666" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429666" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75589" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAAT-CAAAATTTCTTTACCTTCATTTTGTTATTGATG--T-A---TCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAA</genome_strand>
        <mrna_strand>GAAACAGAGTTCAATAATGGCGTCTATGGCAACTCTTACTGCAGTGCAGCCCACCAGTAGTGTCAAGGGCCTAGCCGGAAGCTCCATTGCTGGAACTAAACTAAATGTTAGATCATCTCGCCTCAATTTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATACTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCACCATCACCCTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGGGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCCAAAATTTCTTTACCTTCATTTTGTAATTGATGTATCATCTTCATCTATATAACAGCTTGTAAGTGTACATTGAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E284401" ref_strand="+" ref_description="SGN-E284401 [cLER-16-K10]">
      <seq>gcgtctatggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttggtattgatggatcatctatataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75308" stop="77068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75608" g_stop="75735" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="255" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76768" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="496" r_length="241" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E284401" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75608" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACA</genome_strand>
        <mrna_strand>GCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGGTATTGATGGATCATCTATATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E734274" ref_strand="+" ref_description="SGN-E734274 [LB12BA01]">
      <seq>ggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75316" stop="77139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75616" g_stop="75735" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="247" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76846" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="566" r_length="319" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E734274" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75616" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGC</genome_strand>
        <mrna_strand>GGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E734465" ref_strand="+" ref_description="SGN-E734465 [LB12DA02]">
      <seq>ggcaactcttactgcagtaaagcccaccagtagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccagggctggtgctgtggttgcaaaatatggtgacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacagcttgtaagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaagttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75316" stop="77139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75616" g_stop="75735" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76221" g_stop="76347" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="247" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76528" g_stop="76846" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="566" r_length="319" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E734465" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75616" e_stop="75735"/>
          <exon e_start="76221" e_stop="76347"/>
          <exon e_start="76528" e_stop="76846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGAGCTTTCGAAGATGGAAATTAAAGATGAGTTATAGGCCTGTCAGCATTTATATATTTTTTTGCTTCGACTGATTATGATAGTTTTGTGTAGGGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGC</genome_strand>
        <mrna_strand>GGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E295666" ref_strand="+" ref_description="SGN-E295666 [cLET-25-H13]">
      <seq>gacaagagtgtatattttgacttggaggatttgggcaacacaactggtcagtgggacttgtatggatcagatgctccttcaccttacaactcccttcagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggagatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatcaaaatttctttaccttcattttgttattgatgtatcatctatataacaagcttgtagtgtacattaaagcttacctcagacctctgttacaacaagataaatcttctggaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75949" stop="77132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76249" g_stop="76347" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76528" g_stop="76832" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="404" r_length="305" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="422"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E295666" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76249" e_stop="76347"/>
          <exon e_start="76528" e_stop="76832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAGGTGTCATTTGTCTTTCTCCCCTTAGAGAAAAGAAAATTTCACATTCTTTATCTCAAAAATGTTTCATTAGTTGTTTTGTGCATGTTAGCTCATAGTTGACTAGCTAGTTTCAGCATCGATTATTCGCCAGAACATTACTGAGTCATAACTGTCTTTCTCCTATTATTTTGTATTTGGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAAC-AGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAA</genome_strand>
        <mrna_strand>GACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG....................................................................................................................................................................................AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAAGCTTGT-AGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E612935" ref_strand="+" ref_description="SGN-E612935 [62703]">
      <seq>ggtagagcaagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggggatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatccaaaatttctttaccttcattttgtaattgatgtatcatcttcatctatataacagcttgtaagtgtacattgaagcttacctcagacctctgttacaacaagataaatcttctggaaagtttgaagcattgctttctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="76223" stop="77153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76523" g_stop="76853" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="360"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E612935" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76523" e_stop="76853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAAT-CAAAATTTCTTTACCTTCATTTTGTTATTGATG--T-A---TCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>GGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGGGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCCAAAATTTCTTTACCTTCATTTTGTAATTGATGTATCATCTTCATCTATATAACAGCTTGTAAGTGTACATTGAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTTGAAGCATTGCTTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E457110" ref_strand="+" ref_description="SGN-E457110 [cPRO-1-O10]">
      <seq>caagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggggatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatccaaaatttctttaccttcattttgtaattgatgtatcatcttcatctatataacagcttgtaagtgtacattgaagcttacctcagacctctgttacaacaagataaatcttctggaaagtttgaagcattgctttctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="76230" stop="77153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76530" g_stop="76854" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E457110" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76530" e_stop="76854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAAT-CAAAATTTCTTTACCTTCATTTTGTTATTGATG--T-A---TCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAAG</genome_strand>
        <mrna_strand>CAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGGGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCCAAAATTTCTTTACCTTCATTTTGTAATTGATGTATCATCTTCATCTATATAACAGCTTGTAAGTGTACATTGAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTTGAAGCATTGCTTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E457385" ref_strand="+" ref_description="SGN-E457385 [cPRO-2-H1]">
      <seq>aagttctttgagacatttgctgctcctttcacaaagagaggtctgttgctcaagttcttgatattgggaggtggctcaactcttgcttacttcagttcaactgcatcaggggatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatccaaaatttctttaccttcattttgtaattgatgtatcatcttcatctatataacagcttgtaagtgtacattgaagcttacctcagacctctgttacaacaagataaatcttctggaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="76231" stop="77132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76531" g_stop="76832" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="310" polyA_stop="328"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E457385" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76531" e_stop="76832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAAT-CAAAATTTCTTTACCTTCATTTTGTTATTGATG--T-A---TCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAA</genome_strand>
        <mrna_strand>AAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGGGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCCAAAATTTCTTTACCTTCATTTTGTAATTGATGTATCATCTTCATCTATATAACAGCTTGTAAGTGTACATTGAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E611778" ref_strand="+" ref_description="SGN-E611778 [61533]">
      <seq>ctcaactcttgcttacttcagttcaactgcatcagggatatcctaccaatcaagaaaggcccccaacttccaccaaagctcggtccacgtggcaagatctaattgcttcccaatccaaaatttctttaccttcattttgtaattgatgtatcatcttcatctatataacagcttgtaagtgtacattgaagcttacctcagacctctgttacaacaagataaatcttctggaaagtttgaagcattgctttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="76305" stop="77153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76605" g_stop="76853" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E611778" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>249</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76605" e_stop="76853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAAT-CAAAATTTCTTTACCTTCATTTTGTTATTGATG--T-A---TCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAA</genome_strand>
        <mrna_strand>CTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGG-GATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCCAAAATTTCTTTACCTTCATTTTGTAATTGATGTATCATCTTCATCTATATAACAGCTTGTAAGTGTACATTGAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTTGAAGCATTGCTTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E716281" ref_strand="+" ref_description="SGN-E716281 [FB16CE02]">
      <seq>cgcaattctcagttgagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacgagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaaaaccaatttcagagaatgtactgaagcaactccaaggaagaagggagtatcttctgcttgaggccttcgagacagttacttgagaggctattagtggaagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattagtgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanntttggggggggggggggccgggaccccctttccccttagggggggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84263" stop="11136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83963" g_stop="83900" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="200" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="302" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81926" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="537" r_length="235" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81925" i_stop="80257" i_length="1669">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80256" g_stop="80243" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="551" r_length="14" r_score="0.643"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80242" i_stop="79915" i_length="328">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79914" g_stop="79862" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="602" r_length="51" r_score="0.604"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79861" i_stop="79734" i_length="128">
            <donor d_prob="0.000" d_score="0.58"/>
            <acceptor a_prob="0.209" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79733" g_stop="79706" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="630" r_length="28" r_score="0.607"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E716281" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83963" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81926"/>
          <exon e_start="80256" e_stop="80243"/>
          <exon e_start="79914" e_stop="79862"/>
          <exon e_start="79733" e_stop="79706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACATTTATTTTTCGAAAAAACATTTTTACTAAAGTCTTCTCCTAGCGACTAAGGAACATTTTAGGAGGAAATACTGCACACGTTTGATTTGAACTTATCTTGACCACCTTTTAATTAAGTTGGGTGGCCTGACTTTAAAAGCAAAACAGACTCATTCATTGTCTTATAACAACCAGCCAATAACGAGCGAACAAATGTACAAACGCAATTACACAAATACATAATTGCATTTTGTATAATTAGTCAAAGCAAGAGGCCAGTCCTGTTTCTATCATTCTTCAAAACAAACATGCACACCACGTTCTTCCAACCATTCACTTAAACTAAGAATTAAACACCAAAACATCCTCTCCACAATTTATCCATCAACAAAACACTTTGCCTCTATCCCTTCCTCTCTGTACCTGCACAAACACAATCAAAAATTTTCATTCTTTTTCACCTCATAAACAAACCCCATTTCATTAACTTTCTTGTTATAAGTACCATTTTTATAGAATGTGTTAATCATGATTCTTGAGACGAACAATAATTCAATGGCTGGATTCAAGTCACGTTTGGCTAACGATTCAACGGTCACTAGCCCTCGTTCAGGTAAGTCATTTTCTTCCCTTTTTAGAAAAATCACAAAAAAAAATACATTTTGTGTGTGTGGGGATGGTTCTTGATTTTGTTCATTCTCCATGAAACACAAAAACTTTAGTCAATTGTTTAAAGCCCTGATGTCTCTGATAATACTAATTTTCATAAAGATCTATATTTTCAATATATCCTTTCTGTCACCGTGTGACAATCTCAAGATTTTCACTAAGGGTATTCAAAATACAA</genome_strand>
        <mrna_strand>CGCAATTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACGAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAAACCAATTTCAGAGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAACTCCAAGGAAGAAGGGAGTATCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGAAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAGTGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAANNTT-TG-GGGGGGGGGGGGGCCGGGACCCC................................................................................................................................CTTTCCCCTTAGGGGGGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E416837" ref_strand="-" ref_description="SGN-E416837 [STM-23-P23]">
      <seq>gtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacaccactatgtgtgagggtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgctggaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaagatttagagcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataacatattggatctgatctgcctgtctagtttttatgttaccttgtggttgttcaaattgctcattttgaatctgttgctgtatgaaatgattccatttaatttagtgttaccttgaggttttcaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84231" stop="11129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83931" g_stop="83900" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="168" r_length="136" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="270" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81877" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="553" r_length="283" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81876" i_stop="81816" i_length="61">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81815" g_stop="81756" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="613" r_length="60" r_score="0.700"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81755" i_stop="81023" i_length="733">
            <donor d_prob="0.000" d_score="0.66"/>
            <acceptor a_prob="0.866" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81022" g_stop="81003" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="633" r_length="20" r_score="0.600"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81002" i_stop="79915" i_length="1088">
            <donor d_prob="0.535" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79914" g_stop="79892" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="656" r_length="23" r_score="0.696"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E416837" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416837" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83931" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81877"/>
          <exon e_start="81815" e_stop="81756"/>
          <exon e_start="81022" e_stop="81003"/>
          <exon e_start="79914" e_stop="79892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACA-CACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACATTTATTTTTCGAAAAAACATTTTTACTAAAGTCTTCTCCTAGCGACTAAGGAACATTTTAGGAGGAAATACTGCACACGTTTGATTTGAACTTATCTTGACCACCTTTTAATTAAGTTGGGTGGCCTGACTTTAAAAGCAAAACAGACTCATTCATTGTCTTATAACAACCAGCCAATAACGAGCGAACAAATGTACAAACGCAATTACACAAATACATAATTGCATTTTGTATAATTAGTCAAAGCAAGAGGCCAGTCCTGTTTCTATCATTCTTCAAAACAAACATGCACACCACGTTCTTCCAACCATTCACTTAAACTAAGAATTAAACACCAAAACATCCTCTCCACAATTTATCCATCAACAAAACACTTTGCCTCTATCCCTTCCTCTCTGTACCTGCACAAACACAATCAAAAATTTTCATTCTTTTTCACCTCATAAACAAACCCCATTTCATTAACTTTCTTGTTATAAGTACCATTTTTATAGAATGTGTTAATCATGATTCTTGAGACGAACAATAATTCAATGGCTGGATTCAAGTCACGTTTGGCTAACGATTCAACGGTCACTAGCCCTCGTTCAGGTAAGTCATTTTCTTCCCTTTTTAGAAAAATCACAAAAAAAAATACAT</genome_strand>
        <mrna_strand>GTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACCACTATGTGTGAGG-GTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTGGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGATTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAACATATTGGATCTGATCTGCCTGTCTAGTTTTTATGTTACCTTGTG.............................................................GTTGTTCAAATTGCTCATTTTGAATCTGTTGCTGTATGAAATGATTCCATTTAATTTAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCTTGAGGTTTTCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E552423" ref_strand="+" ref_description="SGN-E552423 [cTSB-3-N5]">
      <seq>gggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83952" stop="11136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83652" g_stop="83516" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="239" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="478" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81921" i_stop="79915" i_length="2007">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79914" g_stop="79895" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="498" r_length="20" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E552423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83652" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
          <exon e_start="79914" e_stop="79895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACATTTATTTTTCGAAAAAACATTTTTACTAAAGTCTTCTCCTAGCGACTAAGGAACATTTTAGGAGGAAATACTGCACACGTTTGATTTGAACTTATCTTGACCACCTTTTAATTAAGTTGGGTGGCCTGACTTTAAAAGCAAAACAGACTCATTCATTGTCTTATAACAACCAGCCAATAACGAGCGAACAAATGTACAAACGCAATTACACAAATACATAATTGCATTTTGTATAATTAGTCAAAGCAAGAGGCCAGTCCTGTTTCTATCATTCTTCAAAACAAACATGCACACCACGTTCTTCCAACCATTCACTTAAACTAAGAATTAAACACCAAAACATCCTCTCCACAATTTATCCATCAACAAAACACTTTGCCTCTATCCCTTCCTCTCTGTACCTGCACAAACACAATCAAAAATTTTCATTCTTTTTCACCTCATAAACAAACCCCATTTCATTAACTTTCTTGTTATAAGTACCATTTTTATAGAATGTGTTAATCATGATTCTTGAGACGAACAATAATTCAATGGCTGGATTCAAGTCACGTTTGGCTAACGATTCAACGGTCACTAGCCCTCGTTCAGGTAAGTCATTTTCTTCCCTTTTTAGAAAAATCACAAAAAAAAATA</genome_strand>
        <mrna_strand>GGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E552736" ref_strand="+" ref_description="SGN-E552736 [cTSB-4-N5]">
      <seq>gggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83952" stop="11136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83652" g_stop="83516" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="239" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="478" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81921" i_stop="79915" i_length="2007">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79914" g_stop="79895" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="498" r_length="20" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E552736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83652" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
          <exon e_start="79914" e_stop="79895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACATTTATTTTTCGAAAAAACATTTTTACTAAAGTCTTCTCCTAGCGACTAAGGAACATTTTAGGAGGAAATACTGCACACGTTTGATTTGAACTTATCTTGACCACCTTTTAATTAAGTTGGGTGGCCTGACTTTAAAAGCAAAACAGACTCATTCATTGTCTTATAACAACCAGCCAATAACGAGCGAACAAATGTACAAACGCAATTACACAAATACATAATTGCATTTTGTATAATTAGTCAAAGCAAGAGGCCAGTCCTGTTTCTATCATTCTTCAAAACAAACATGCACACCACGTTCTTCCAACCATTCACTTAAACTAAGAATTAAACACCAAAACATCCTCTCCACAATTTATCCATCAACAAAACACTTTGCCTCTATCCCTTCCTCTCTGTACCTGCACAAACACAATCAAAAATTTTCATTCTTTTTCACCTCATAAACAAACCCCATTTCATTAACTTTCTTGTTATAAGTACCATTTTTATAGAATGTGTTAATCATGATTCTTGAGACGAACAATAATTCAATGGCTGGATTCAAGTCACGTTTGGCTAACGATTCAACGGTCACTAGCCCTCGTTCAGGTAAGTCATTTTCTTCCCTTTTTAGAAAAATCACAAAAAAAAATA</genome_strand>
        <mrna_strand>GGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E715003" ref_strand="+" ref_description="SGN-E715003 [FB13AC03]">
      <seq>caggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccaaaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcggagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataggtcttgttctcgctctctgaattccgccaggaatgtacctttggggggggcgatttgcccgttttccccgcattgggttgattttaaaatctgcaattttaatttgggaccatgaggaatgggatatccttgtactggttatggtgttttaatatattatgtgatacgcgatgtatttggtttgcaataaaagcacttgttggtttttttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84236" stop="52421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83937" g_stop="83900" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="174" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="276" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81909" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="526" r_length="250" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81908" i_stop="81518" i_length="391">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81517" g_stop="81505" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="539" r_length="13" r_score="0.692"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81504" i_stop="81427" i_length="78">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.688" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81426" g_stop="81399" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="567" r_length="28" r_score="0.393"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81398" i_stop="81235" i_length="164">
            <donor d_prob="0.561" d_score="0.00"/>
            <acceptor a_prob="0.798" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81234" g_stop="81180" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="620" r_length="53" r_score="0.545"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81179" i_stop="81023" i_length="157">
            <donor d_prob="0.000" d_score="0.56"/>
            <acceptor a_prob="0.866" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="81022" g_stop="81003" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="640" r_length="20" r_score="0.550"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="81002" i_stop="80732" i_length="271">
            <donor d_prob="0.535" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="80731" g_stop="80719" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="653" r_length="13" r_score="0.769"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="80718" i_stop="80648" i_length="71">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="80647" g_stop="80637" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="663" r_length="10" r_score="0.636"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="80636" i_stop="80291" i_length="346">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.594" a_score="0.44"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="80290" g_stop="80243" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="711" r_length="48" r_score="0.438"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="80242" i_stop="79930" i_length="313">
            <donor d_prob="0.997" d_score="0.44"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="79929" g_stop="79899" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="742" r_length="31" r_score="0.742"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E715003" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83937" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81909"/>
          <exon e_start="81517" e_stop="81505"/>
          <exon e_start="81426" e_stop="81399"/>
          <exon e_start="81234" e_stop="81180"/>
          <exon e_start="81022" e_stop="81003"/>
          <exon e_start="80731" e_stop="80719"/>
          <exon e_start="80647" e_stop="80637"/>
          <exon e_start="80290" e_stop="80243"/>
          <exon e_start="79929" e_stop="79899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACATTTATTTTTCGAAAAAACATTTTTACTAAAGTCTTCTCCTAGCGACTAAGGAACATTTTAGGAGGAAATACTGCACACGTTTGATTTGAACTTATCTTGACCACCTTTTAATTAAGTTGGGTGGCCTGACTTTAAAAGCAAAACAGACTCATTCATTGTCTTATAACAACCAGCCAATAACGAGCGAACAAATGTACAAACGCAATTACACAAATACATAATTGCATTTTGTATAATTAGTCAAAGCAAGAGGCCAGTCCTGTTTCTATCATTCTTCAAAACAAACATGCACACCACGTTCTTCCAACCATTCACTTAAACTAAGAATTAAACACCAAAACATCCTCTCCACAATTTATCCATCAACAAAACACTTTGCCTCTATCCCTTCCTCTCTGTACCTGCACAAACACAATCAAAAATTTTCATTCTTTTTCACCTCATAAACAAACCCCATTTCATTAACTTTCTTGTTATAAGTACCATTTTTATAGAATGTGTTAATCATGATTCTTGAGACGAACAATAATTCAATGGCTGGATTCAAGTCACGTTTGGCTAACGATTCAACGGTCACTAGCCCTCGTTCAGGTAAGTCATTTTCTTCCCTTTTTAGAAAAATCACAAAAAAA</genome_strand>
        <mrna_strand>CAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAAAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCGGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCAT-AGGTCTT-GTTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCTGAATTC..............................................................................CGCCAGGAATGTACCTTTGGGGGGGGCG....................................................................................................................................................................ATTTGCCCGTTTTCCCCGCATTGGGTTGATTTTAA--AATCTGCAATTTTAATTT.............................................................................................................................................................GGGACCATGAGGAATGGGAT...............................................................................................................................................................................................................................................................................ATCCTTGTACTGG.......................................................................TTATGGTG-TT..........................................................................................................................................................................................................................................................................................................................................................TTAATATATTATGTGATACGCGATGTATTTGGTTTGCAATAAAAGCAC.........................................................................................................................................................................................................................................................................................................................TTGTTGGTTTTTTTGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E722892" ref_strand="+" ref_description="SGN-E722892 [FC18CF11]">
      <seq>cccatggggatccgatgataagcactgcctagatcgccgcagttctcagttgagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcaaaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccttanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccccccaaaaggggcccccttgaatttttttagggccccccaaaaaattgggggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84291" stop="52416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83984" g_stop="83900" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="101" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="237" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="339" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81923" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="577" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81922" i_stop="80682" i_length="1241">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80681" g_stop="80660" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="599" r_length="22" r_score="0.591"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80659" i_stop="80561" i_length="99">
            <donor d_prob="0.508" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80560" g_stop="80464" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="695" r_length="96" r_score="0.495"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E722892" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83984" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81923"/>
          <exon e_start="80681" e_stop="80660"/>
          <exon e_start="80560" e_stop="80464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACATTTATTTTTCGAAAAAACATTTTTACTAAAGTCTTCTCCTAGCGACTAAGGAACATTTTAGGAGGAA</genome_strand>
        <mrna_strand>GATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAAAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NAAAAAAAAAAAAAAAAAAAAA...................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCCCAAAAGGGGCCCCCTTGAATTTTTTTAGGGCCCCCCA-AAAAATTGGGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E718949" ref_strand="+" ref_description="SGN-E718949 [FC06BC07]">
      <seq>aatcggccgaattggagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84253" stop="11129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83951" g_stop="83900" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="64" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="200" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="302" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81923" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="540" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81922" i_stop="80705" i_length="1218">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80704" g_stop="80660" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="585" r_length="45" r_score="0.600"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80659" i_stop="80561" i_length="99">
            <donor d_prob="0.508" d_score="0.60"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80560" g_stop="80531" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="615" r_length="30" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E718949" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83951" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81923"/>
          <exon e_start="80704" e_stop="80660"/>
          <exon e_start="80560" e_stop="80531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACA</genome_strand>
        <mrna_strand>TGGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA...................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E340143" ref_strand="+" ref_description="SGN-E340143 [cTOF-2-G1]">
      <seq>gccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83656" stop="11129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83356" g_stop="83300" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="296" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81921" i_stop="81469" i_length="453">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81468" g_stop="81460" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="305" r_length="9" r_score="0.667"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81459" i_stop="80561" i_length="899">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80560" g_stop="80531" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="335" r_length="30" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E340143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83356" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
          <exon e_start="81468" e_stop="81460"/>
          <exon e_start="80560" e_stop="80531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTACCAACTGAACCGCGTAAATTTAATGATAAATAACTCTTCTTGCTTCTATGTAATTTATAATTTTTTTTTTAAAAAAAAATAGAATAATTTTAATCTTATAAAAATGTTTATGTGAGTACAAATCCTCTAAATGAAAATAGATGATCCTCGTAAAAAGTCATAACTCATAATCAATCTCAACTAGTTTAGGATCACACACAATTAATTGATTAACAAATAAATATATAAATCATGACTGTACTGATTCACATTATAGCAAAACTTCCGAATACTATTACTGGATATCATTACCTCGAAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTTGTAAGTGACACTTTATACTGATCGTCTCCTTTACCCTTCAACACCATGACCCATGTCCCTGTCCATCCCACCTTGGAGTGATACTTTGCGTTCACTAAGCAAACATAAATAAATAAATACCAAAAAACA</genome_strand>
        <mrna_strand>GCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................NAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E229712" ref_strand="+" ref_description="SGN-E229712 [cLEL-4-F1]">
      <seq>ttttttttttttttttttatggaagtctcaagatccgttctttataaaaatgccaagttggaacacatacttttaaaattttaagcacattaatctttcaaagggcaataaaaactaagatagaaggtcccaaaattttactttgttctaacacttgaaatatcaaaatgaagctaccactaatagcctcttaagtaactgtctcgaaggcctcaagcagaagctactcccttttttcttggagctgcttcagtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="52418" stop="82462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80661" g_stop="80676" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80677" i_stop="81921" i_length="1245">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81922" g_stop="82162" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="258" r_length="242" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E229712" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80661" e_stop="80676"/>
          <exon e_start="81922" e_stop="82162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTATTTTTCTTAATTTCCTTAGAGGTTATTTCTTTATTTTCGAGGTAATGATATCCAGTAATAGTATTCGGAAGTTTTGCTATAATGTGAATCAGTACAGTCATGATTTATATATTTATTTGTTAATCAATTAATTGTGTGTGATCCTAAACTAGTTGAGATTGATTATGAGTTATGACTTTTTACGAGGATCATCTATTTTCATTTAGAGGATTTGTACTCACATAAACATTTTTATAAGATTAAAATTATTCTATTTTTTTTTAAAAAAAAAATTATAAATTACATAGAAGCAAGAAGAGTTATTTATCATTAAATTTACGCGGTTCAGTTGGTACGTTGCATCGCTCAAGGCGGCCTGAGGAATATTTCATTTTTACAGGAAGAGTTAAATGTCATGGCCTGGTTGTTACCCCTTTGCTACTGCGACTTCTTTCATTTAACAATTTTACAAGACTATTGAGATTTTAAACGCCTTACAGTAAAGACTTCTTTCATTAAAAATTTTACAAGACTATTTGAAATTTTAGACGCCTTACCTTCAACCCAATTCGATGCCCTCAACACCATCTAGCAACTAGCAACATTGTGTATTTCTAACATCAGATGTAGAAATTATTTATTAGCACCATGACGGAAATATAAACATTGCACTGAAAGATTCCATTATAGGAGTCGACTCATTTGAGAAAAAAAAATGTCATGGGAGATAATTGGTGAATAACTCAAATCACCTTGTAGCCTAAAGTTAGTTCAGTTAACCTACAACTCCAAAAAAAAACACATCGCTATAACTTCATTTTCCTGAAAACAAGAGAACTTCAAAGAAAAAAAGGAGACAAGATCAGAGAGAAATTTCTTTTATCATGAGAATAATTTCCAGTACTACTTTGTATTTAATGGTGATCCCAGCCGCGCAATATGCCACACTGTTTTTCTTTGCATTGTTTCAGTAACCAAGAAAGAAACGCAAGACTTCAGAGACATACATTTGAATTCATACTGCAAGCTAAACTAATCATCTATGCTAACATTTAACAGGTAACATCACCATACTAAGAACCGGATCAGGCAAATCAGAATAAAAGAACAGCACATTGGGCGTCGTTTATTCATACAGCACCAGATTTGAAATAAGCAAGTTGAACAACCTCAAGGTAACAATAAAATAAATGGAATCATTTCAACATCAACAGATTCAAAAAGGGCAACCACAAGGTAAGATAAAAACTAGACAGGTAGATCAGATCCAACAAGTTATGGAAGTCTCAAGATCCGTTCTTTATAAAAATGCCAAGTTGGAACACATACTTTTAAAATTTTAAGCACATTAATCTTTCAAAGGGCAATAAAAACTAAGATAGAAGGTCCCAAAATTTTAC-TTGCTCTAACACTTGAAATATCAAAATGAAGCTACCACTAATAGCCTCTCAAGTAACTGTCTCGAAGGCCTCAAGCAGAAGCTACTCCCTTCTTCCTTGGAGCTGCTTCAGTACCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAAGTCTCAAGATCCGTTCTTTATAAAAATGCCAAGTTGGAACACATACTTTTAAAATTTTAAGCACATTAATCTTTCAAAGGGCAATAAAAACTAAGATAGAAGGTCCCAAAATTTTACTTTGTTCTAACACTTGAAATATCAAAATGAAGCTACCACTAATAGCCTCTTAAGTAACTGTCTCGAAGGCCTCAAGCAGAAGCTACTCCCTTTTTTCTTGGAGCTGCTTCAGTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E286923" ref_strand="+" ref_description="SGN-E286923 [cLES-6-C9]">
      <seq>ctgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacagctggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagttgtttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggttgtgttggagttggagaaattagagggggagatttctctgtctctgatggtcttgtttgccccaaacctcgccggaatgggcttttcaacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83963" stop="52408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83912" g_stop="83900" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="149" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="251" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="491" r_length="240" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81921" i_stop="81617" i_length="305">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81616" g_stop="81598" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="510" r_length="19" r_score="0.684"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81597" i_stop="81469" i_length="129">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.745" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81468" g_stop="81399" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="574" r_length="64" r_score="0.500"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81398" i_stop="81235" i_length="164">
            <donor d_prob="0.561" d_score="0.48"/>
            <acceptor a_prob="0.798" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81234" g_stop="81211" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="598" r_length="24" r_score="0.542"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81210" i_stop="81023" i_length="188">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.866" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="81022" g_stop="81000" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="621" r_length="23" r_score="0.652"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E286923" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83912" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
          <exon e_start="81616" e_stop="81598"/>
          <exon e_start="81468" e_stop="81399"/>
          <exon e_start="81234" e_stop="81211"/>
          <exon e_start="81022" e_stop="81000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTT-TTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATAGTCTTGTAAAATTTTTAATGAAAGAAGTCTTTACTGTAAGGCGTTTAAAATCTCAATAGTCTTGTAAAATTGTTAAATGAAAGAAGTCGCAGTAGCAAAGGGGTAACAACCAGGCCATGACATTTAACTCTTCCTGTAAAAATGAAATATTCCTCAGGCCGCCTTGAGCGATGCAACGTA</genome_strand>
        <mrna_strand>CTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAGCTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTGTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTAAAAAA.................................................................................................................................................................................................................................................................................................................AGAAAAAAAAAAAAAAAAA.................................................................................................................................AAAAAAAAAACTCGAG-GTTGTG-TTGGAGTTGGAGAAATTAG-AGGGGGAGATTTCTCT-GTCT-C-TG....................................................................................................................................................................ATGGTCTTGTTTGCCCCAAACCTC............................................................................................................................................................................................GCCGGAATGGGCTTTTCAACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E372262" ref_strand="+" ref_description="SGN-E372262 [TUS-30-L5]">
      <seq>ctgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctcgaggttgtgttggagttggagaaattagagggggagatttctctgtctctgatggtcttgtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83963" stop="11126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83912" g_stop="83900" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="149" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="251" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="490" r_length="239" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81921" i_stop="81566" i_length="356">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81565" g_stop="81554" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="502" r_length="12" r_score="0.667"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81553" i_stop="81469" i_length="85">
            <donor d_prob="0.543" d_score="0.00"/>
            <acceptor a_prob="0.745" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81468" g_stop="81427" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="543" r_length="41" r_score="0.595"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81426" i_stop="81268" i_length="159">
            <donor d_prob="0.000" d_score="0.60"/>
            <acceptor a_prob="0.000" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81267" g_stop="81221" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="587" r_length="44" r_score="0.574"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E372262" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83912" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
          <exon e_start="81565" e_stop="81554"/>
          <exon e_start="81468" e_stop="81427"/>
          <exon e_start="81267" e_stop="81221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAGGTGATTTGAGTTATTCACCAATTATCTCCCATGACATTTTTTTTTCTCAAATGAGTCGACTCCTATAATGGAATCTTTCAGTGCAATGTTTATATTTCCGTCATGGTGCTAATAAATAATTTCTACATCTGATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGC</genome_strand>
        <mrna_strand>CTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTAAAAAA....................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA.....................................................................................AAAAAAAAAAAAAAAACCTCGAG-GTTGTGTTGGAGTTGGAG...............................................................................................................................................................AAATTAGAGGGGGA-GATTTCTCT-GTCTCT-GATGGTCTTGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E309048" ref_strand="-" ref_description="SGN-E309048 [cLEZ-1-G7]">
      <seq>cgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttcaaaaaaaaaaaaaaaaaaaactcgaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84229" stop="52411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83929" g_stop="83900" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="166" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="268" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81921" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="508" r_length="240" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81920" i_stop="81469" i_length="452">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81468" g_stop="81447" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="530" r_length="22" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E309048" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309048" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83929" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81921"/>
          <exon e_start="81468" e_stop="81447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGATGT</genome_strand>
        <mrna_strand>CGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E234207" ref_strand="-" ref_description="SGN-E234207 [cLEL-8-J1]">
      <seq>caactggaactggccgcataaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaaaaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagtcttcaaaagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83668" stop="11136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83368" g_stop="83300" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82160" g_stop="81923" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="307" r_length="238" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81922" i_stop="81469" i_length="454">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81468" g_stop="81450" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="326" r_length="19" r_score="0.526"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E234207" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234207" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83368" e_stop="83300"/>
          <exon e_start="82160" e_stop="81923"/>
          <exon e_start="81468" e_stop="81450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATAGCGA</genome_strand>
        <mrna_strand>CAACTGGAACTGGCCGCATAAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAAAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGTCTTCAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E457240" ref_strand="+" ref_description="SGN-E457240 [cPRO-1-L8]">
      <seq>gatcgccgcagttctcagttgagaaagcttaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaatagttagatcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84269" stop="52421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83969" g_stop="83900" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="206" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="308" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="546" r_length="238" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81921" i_stop="81469" i_length="453">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81468" g_stop="81454" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="561" r_length="15" r_score="0.533"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E457240" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83969" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
          <exon e_start="81468" e_stop="81454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTATA</genome_strand>
        <mrna_strand>GATCGCCGCAGTTCTCAGTTGAGAAAGCTTAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAATAGTTAGATCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E234896" ref_strand="-" ref_description="SGN-E234896 [cLEL-6-E2]">
      <seq>cgttgctctgcttgtgcttacccttctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagtccaatttcagagaaggtactgaaccagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttcaataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83858" stop="11136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83558" g_stop="83516" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="145" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82160" g_stop="81919" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="387" r_length="242" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81918" i_stop="81469" i_length="450">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81468" g_stop="81456" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="400" r_length="13" r_score="0.538"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E234896" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234896" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83558" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81919"/>
          <exon e_start="81468" e_stop="81456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTA</genome_strand>
        <mrna_strand>CGTTGCTCTGCTTGTGCTTACCCTTCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGTCCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAACCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCAATAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E229343" ref_strand="-" ref_description="SGN-E229343 [cLEL-4-F1]">
      <seq>acgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83635" stop="52418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83335" g_stop="83300" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82160" g_stop="81919" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="278" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81918" i_stop="81469" i_length="450">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81468" g_stop="81456" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="291" r_length="13" r_score="0.538"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E229343" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229343" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83335" e_stop="83300"/>
          <exon e_start="82160" e_stop="81919"/>
          <exon e_start="81468" e_stop="81456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGTTA</genome_strand>
        <mrna_strand>ACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E277480" ref_strand="-" ref_description="SGN-E277480 [cLER-3-I12]">
      <seq>actatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccggagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggtatttttataaagaacggatcttgagacttccataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83904" stop="52421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83604" g_stop="83516" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="191" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82160" g_stop="81919" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="433" r_length="242" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81918" i_stop="81469" i_length="450">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81468" g_stop="81458" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="444" r_length="11" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E277480" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277480" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83604" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81919"/>
          <exon e_start="81468" e_stop="81458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAGT</genome_strand>
        <mrna_strand>ACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGGAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGTATTTTTATAAAGAACGGATCTTGAGACTTCCATAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E716785" ref_strand="+" ref_description="SGN-E716785 [FB18AB02]">
      <seq>ggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84238" stop="11136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83938" g_stop="83900" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="175" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="277" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81919" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="519" r_length="242" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81918" i_stop="81469" i_length="450">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.745" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81468" g_stop="81459" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="529" r_length="10" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E716785" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83938" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81919"/>
          <exon e_start="81468" e_stop="81459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTGGTTGCCCTTTTTGAATCTGTTGATGTTGAAATGATTCCATTTATTTTATTGTTACCTTGAGGTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCTGTTCTTTTATTCTGATTTGCCTGATCCGGTTCTTAGTATGGTGATGTTACCTGTTAAATGTTAGCATAGATGATTAGTTTAGCTTGCAGTATGAATTCAAATGTATGTCTCTGAAGTCTTGCGTTTCTTTCTTGGTTACTGAAACAATGCAAAGAAAAACAGTGTGGCATATTGCGCGGCTGGGATCACCATTAAATACAAAGTAGTACTGGAAATTATTCTCATGATAAAAGAAATTTCTCTCTGATCTTGTCTCCTTTTTTTCTTTGAAGTTCTCTTGTTTTCAGGAAAATGAAG</genome_strand>
        <mrna_strand>GGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCAAAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E349413" ref_strand="+" ref_description="SGN-E349413 [cTOS-1-L5]">
      <seq>gaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataacttgttggatctgatctacctgtctagtttttatcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84234" stop="81584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83934" g_stop="83900" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="171" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="273" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81884" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="550" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E349413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83934" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTA</genome_strand>
        <mrna_strand>GAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E416836" ref_strand="+" ref_description="SGN-E416836 [STM-23-P23]">
      <seq>cgcgggtcgcttagggtttctgcaactgtagcgtaatggggtaagggaaccggaaagcttcggtaagaggaggaaaccaagacccacacactatgtgtgaagggtggtggaagacggagcttccatctccagaagaagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgctggaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaagatttagagcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataacatattggatctgatctgcctgtctagtttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84232" stop="81588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83936" g_stop="83900" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.865"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="182" r_length="144" r_score="0.868"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="284" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81888" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="556" r_length="272" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E416836" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83936" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGGTCGCT-AGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGG-GTAAGGGAACAGG-AAGCTTCGGTAAGAGGAGG-AA-CAAGACCCACACACTATGTGTG-A-GGT-GTGGAAGACGGAGCTTCCATCTCCAGAAG-AGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTAT</genome_strand>
        <mrna_strand>CGCGGGTCGCTTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGGTAAGGGAACCGGAAAGCTTCGGTAAGAGGAGGAAACCAAGACCCACACACTATGTGTGAAGGGTGGTGGAAGACGGAGCTTCCATCTCCAGAAGAAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTGGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGATTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAACATATTGGATCTGATCTGCCTGTCTAGTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E452806" ref_strand="+" ref_description="SGN-E452806 [cSTS-18-C17]">
      <seq>gttctcagttgagaaagcttaagaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctacagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtaacttctgcttgaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaatagttagatcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataacttattggatctgatctgcctgtctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84259" stop="81596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83959" g_stop="83900" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="196" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="298" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81896" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="562" r_length="264" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E452806" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83959" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTA</genome_strand>
        <mrna_strand>GTTCTCAGTTGAGAAAGCTTAAGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTACAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAACTTCTGCTTGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAATAGTTAGATCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAACTTATTGGATCTGATCTGCCTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E452818" ref_strand="+" ref_description="SGN-E452818 [cSTS-18-E19]">
      <seq>gttctcagttgagaaagcttaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaatagttagatcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataacttattggatctgatctgcctgtctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84259" stop="81596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83959" g_stop="83900" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="196" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="298" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81896" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="562" r_length="264" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E452818" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83959" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTA</genome_strand>
        <mrna_strand>GTTCTCAGTTGAGAAAGCTTAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAATAGTTAGATCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAACTTATTGGATCTGATCTGCCTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E286831" ref_strand="-" ref_description="SGN-E286831 [cLES-14-D13]">
      <seq>catgggttgctgggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataacttgttggatctgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84232" stop="81608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83931" g_stop="83900" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="45" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="181" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="283" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81902" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="542" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E286831" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286831" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83931" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACC</genome_strand>
        <mrna_strand>GTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E451511" ref_strand="+" ref_description="SGN-E451511 [cSTS-12-P18]">
      <seq>gatcgccgcagttctcagttgagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgctggaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaagatttagagcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataacatattggatctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84269" stop="81608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83969" g_stop="83900" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="206" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="308" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81909" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="559" r_length="251" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="571"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E451511" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83969" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTG</genome_strand>
        <mrna_strand>GATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTGGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGATTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAACATATTGGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E349599" ref_strand="+" ref_description="SGN-E349599 [cTOS-1-D2]">
      <seq>tggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83664" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83364" g_stop="83300" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82160" g_stop="81917" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="309" r_length="244" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E349599" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83364" e_stop="83300"/>
          <exon e_start="82160" e_stop="81917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGT</genome_strand>
        <mrna_strand>TGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E340870" ref_strand="+" ref_description="SGN-E340870 [cTOF-5-L22]">
      <seq>tcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84241" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83941" g_stop="83900" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="178" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="280" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81918" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="523" r_length="243" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E340870" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83941" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTG</genome_strand>
        <mrna_strand>TCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E593872" ref_strand="+" ref_description="SGN-E593872 [37112]">
      <seq>gtcgctagggtttctgcaactgtagcgtaatgggtaatggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttaacagttacttgagaggctattagtggtagcttcattttgatatttcaagatttagagcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84231" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83931" g_stop="83900" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="167" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="269" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81918" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="510" r_length="241" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E593872" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83931" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTG</genome_strand>
        <mrna_strand>GTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAATGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCG-CCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TA-ACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGATTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E409211" ref_strand="+" ref_description="SGN-E409211 [PPI-13-M14]">
      <seq>gaaagcttaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaatagttagatcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84247" stop="81619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83947" g_stop="83900" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="184" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="286" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81919" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="527" r_length="241" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="537"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E409211" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83947" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTT</genome_strand>
        <mrna_strand>GAAAGCTTAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAATAGTTAGATCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E448733" ref_strand="+" ref_description="SGN-E448733 [cSTS-4-E20]">
      <seq>cgcagttctcagttgagaaagcttaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaatagttagatcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84263" stop="81631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83963" g_stop="83900" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="200" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="302" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81920" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="542" r_length="240" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E448733" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83963" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACT</genome_strand>
        <mrna_strand>CGCAGTTCTCAGTTGAGAAAGCTTAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAATAGTTAGATCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E403362" ref_strand="+" ref_description="SGN-E403362 [PPC-10-K16]">
      <seq>agagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagcgccgcagttctcagttgagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacactctatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgctggaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaagatttagagcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="95786" stop="81621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84441" g_stop="84397" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.511"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84396" i_stop="84227" i_length="170">
            <donor d_prob="0.893" d_score="0.51"/>
            <acceptor a_prob="0.330" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84226" g_stop="84163" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="104" r_length="61" r_score="0.531"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84162" i_stop="83971" i_length="192">
            <donor d_prob="0.000" d_score="0.52"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83970" g_stop="83900" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="175" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="311" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="413" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82160" g_stop="81921" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="652" r_length="239" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="653" polyA_stop="664"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E403362" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84441" e_stop="84397"/>
          <exon e_start="84226" e_stop="84163"/>
          <exon e_start="83970" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAATTGAGATAATTTAGATATGTGAAGAGGATATAGATCAAGTATGTTTCGTTCATAGTTGTGATTAATTTTTTTTTAATCGAGAATGAAAAACCTTGTAATCATGATAATTTTTTTTTAGAATCAAAATTGAATTGGCCTTCAATTACTCAAATAAAATCTAAAATCTCATTACCTCACTTTGAGGTGCAAGTGGTTGACTATAGTATAGGTGGGTTTAAAGAGGTAAAGGTATACCGAAAAAGGAACCAGAGTGGTGATTAAGCAAGATAGAAATTTAAAATCTCACACAAAGAGGCTATTTTTCAAAGGCAAGACCAAAATGTGGCTAGTGAATGCTAATTCTACCGAAAAGCTTGAATATATTGATTTAGTCCAATTACCTTGGGCCCAATTCAAGCCCATTATCACTTTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAAC</genome_strand>
        <mrna_strand>AGAGAGAGAGAGAGA-GAGAGAGA-GAGAGAGAGAGAGAGAGAGA..........................................................................................................................................................................GAGAG-AGAGAGAGAGAGAGAGAGAGAGAGAGA-GAGAGAGAG-AGAGAGAGAGAGAGAGAGAG................................................................................................................................................................................................AGAGCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACTCTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTGGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGATTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E478210" ref_strand="+" ref_description="SGN-E478210 [cSTD-3-L11]">
      <seq>atcgccgcagttctcagttgagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgctggaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaagatttagagcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84268" stop="81621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83968" g_stop="83900" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="205" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="307" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81921" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="546" r_length="239" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="556"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E478210" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83968" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAAC</genome_strand>
        <mrna_strand>ATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTGGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGATTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E407892" ref_strand="+" ref_description="SGN-E407892 [PPI-8-L10]">
      <seq>cgagggtcgccagggtttctgcaacctgtagcgtaatgggtaagggaaccggaagcttcggtaagaggaggaaccagcccacacactatgtgtgaggtgtggaagaacggagcttccatctccagaagagccgttgctctgcttgtgcttacccctgccgcccgtaaaaaggaccatacaactggagtgtgaaggctattcgcagaaagaccaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagaaaaggtactgaagcagctccaaggaagaagggagtagcttctgctggaggcctttagacagttacttgagaaggctattagtggtagcttcattttgatatttcaagatttagagcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83963" stop="81621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83936" g_stop="83900" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.838"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="177" r_length="139" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.85"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="280" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81921" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="520" r_length="240" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="521" polyA_stop="531"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E407892" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83936" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGGTCGCTAGGGTTTCTGCAA-CTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAG-ACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTA-CCCTGCTGCCCGT-AAAAGGA-CATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGA-CAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAG-AGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAAC</genome_strand>
        <mrna_strand>CGAGGGTCGCCAGGGTTTCTGCAACCTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACCGGAAGCTTCGGTAAGAGGAGGAACCAG-CCCACACACTATGTGTGAGGTGTGGAAGAACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCCTGCCGCCCGTAAAAAGGACCAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACCAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTGGAGGCCTT-TAGACAGTTACTTGAGAAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGATTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E448023" ref_strand="+" ref_description="SGN-E448023 [cSTS-1-D5]">
      <seq>ggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgctggaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaagatttagagcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84223" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83923" g_stop="83900" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="160" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="262" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81921" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="501" r_length="239" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E448023" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83923" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAAC</genome_strand>
        <mrna_strand>GGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTGGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGATTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E593619" ref_strand="+" ref_description="SGN-E593619 [36853]">
      <seq>gccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaatagttagatcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83656" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83356" g_stop="83300" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82160" g_stop="81921" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="296" r_length="239" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E593619" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83356" e_stop="83300"/>
          <exon e_start="82160" e_stop="81921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAAC</genome_strand>
        <mrna_strand>GCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAATAGTTAGATCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E618132" ref_strand="+" ref_description="SGN-E618132 [68807]">
      <seq>tagatcgccgcagttctcagttgagaaagcttaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttagaacagttacttgagaggctattagtggtagcttcattttgatatttcaatatttagatcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaatttttaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84271" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83971" g_stop="83900" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="208" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="310" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="549" r_length="239" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E618132" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83971" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</genome_strand>
        <mrna_strand>TAGATCGCCGCAGTTCTCAGTTGAGAAAGCTTAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTTAGAACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAATATTTAGATCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTTAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E344986" ref_strand="+" ref_description="SGN-E344986 [cTOF-22-B1]">
      <seq>ccgcagttctcagttgagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84264" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83964" g_stop="83900" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="201" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="303" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="542" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="554"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E344986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83964" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</genome_strand>
        <mrna_strand>CCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E336937" ref_strand="+" ref_description="SGN-E336937 [cTOE-5-K3]">
      <seq>gcagttctcagttgagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttncataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84262" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83962" g_stop="83900" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="199" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="301" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="540" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="541" polyA_stop="552"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E336937" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83962" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</genome_strand>
        <mrna_strand>GCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTNCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E295222" ref_strand="+" ref_description="SGN-E295222 [cLET-20-P16]">
      <seq>ctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84242" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83942" g_stop="83900" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="179" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="281" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="520" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E295222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83942" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</genome_strand>
        <mrna_strand>CTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E564146" ref_strand="+" ref_description="SGN-E564146 [3560]">
      <seq>gaggtcgctaggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctggccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcggcaggttcaagaccaatttcagagaaggtactgaagcagctccaagggaagaagggagtagcttctgcttgaggcctttagacagttacttggagaggctattagtggtagcttcattttgatatttcaatagttagatcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataaaaaaaaaaaaacaaaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84234" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83934" g_stop="83900" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="171" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="274" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="514" r_length="240" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="531"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E564146" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83934" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCT-GCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTC-GCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAA-GGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTT-GAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</genome_strand>
        <mrna_strand>GAGGTCGCTA-GGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TAGACAGTTACTTGGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAATAGTTAGATCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E561338" ref_strand="+" ref_description="SGN-E561338 [17315]">
      <seq>gtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaagatttagagcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84231" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83931" g_stop="83900" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="168" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="270" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="508" r_length="238" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E561338" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83931" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</genome_strand>
        <mrna_strand>GTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGATTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E558358" ref_strand="+" ref_description="SGN-E558358 [17685]">
      <seq>cgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagaccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttaacagttacttgagaggctattagtggtagcttcattttgatatttcaagatttagagcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83958" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83906" g_stop="83900" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="141" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="243" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="480" r_length="237" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E558358" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83906" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</genome_strand>
        <mrna_strand>CGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGA-CCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCG-CCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TA-ACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGATTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E402256" ref_strand="+" ref_description="SGN-E402256 [PPC-7-O11]">
      <seq>gacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaatagttagatcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83913" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83613" g_stop="83516" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="200" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="438" r_length="238" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E402256" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83613" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</genome_strand>
        <mrna_strand>GACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAATAGTTAGATCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E586635" ref_strand="+" ref_description="SGN-E586635 [75468]">
      <seq>tggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaatagttagatcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83889" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83589" g_stop="83516" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="176" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82160" g_stop="81922" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="414" r_length="238" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="415" polyA_stop="426"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E586635" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83589" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA</genome_strand>
        <mrna_strand>TGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAATAGTTAGATCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E345327" ref_strand="+" ref_description="SGN-E345327 [cTOF-13-P6]">
      <seq>ggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccntnnnnaaaaaaaaaannaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84238" stop="81624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83938" g_stop="83900" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="175" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="277" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81926" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="512" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E345327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83938" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</genome_strand>
        <mrna_strand>GGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E733757" ref_strand="+" ref_description="SGN-E733757 [LB10DD12]">
      <seq>cggtaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84235" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83937" g_stop="83900" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="174" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="276" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81926" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="511" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="521"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E733757" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83937" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</genome_strand>
        <mrna_strand>CGGTAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E309047" ref_strand="+" ref_description="SGN-E309047 [cLEZ-1-G7]">
      <seq>gctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84228" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83928" g_stop="83900" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="165" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="267" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81926" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="502" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="503" polyA_stop="513"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E309047" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83928" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</genome_strand>
        <mrna_strand>GCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E712734" ref_strand="+" ref_description="SGN-E712734 [FB05CG01]">
      <seq>ggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84223" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83923" g_stop="83900" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="160" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="262" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81926" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="497" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="507"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E712734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83923" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</genome_strand>
        <mrna_strand>GGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E712843" ref_strand="+" ref_description="SGN-E712843 [FB05DH10]">
      <seq>ggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagacttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84223" stop="81622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83923" g_stop="83900" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="160" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="262" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81926" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="497" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="507"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E712843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83923" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</genome_strand>
        <mrna_strand>GGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E586963" ref_strand="-" ref_description="SGN-E586963 [75800]">
      <seq>ctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaagatttagagcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcatttttataaagaagggatcttgagacttccctcgtgccgaattcggcancgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83870" stop="81624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83570" g_stop="83516" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="157" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82160" g_stop="81926" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="391" r_length="234" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E586963" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586963" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83570" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC</genome_strand>
        <mrna_strand>CTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGATTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTTATAAAGAAGGGATCTTGAGACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E339454" ref_strand="+" ref_description="SGN-E339454 [cTOF-4-B14]">
      <seq>gcagttctcagttgagatagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84262" stop="81628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83962" g_stop="83900" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="199" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="301" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81928" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="534" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E339454" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83962" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTT</genome_strand>
        <mrna_strand>GCAGTTCTCAGTTGAGATAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E298630" ref_strand="+" ref_description="SGN-E298630 [cLET-44-M19]">
      <seq>gaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacaggtacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcacgtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatcttgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84237" stop="81630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83937" g_stop="83900" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="174" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="276" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81930" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="507" r_length="231" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E298630" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83937" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGAC</genome_strand>
        <mrna_strand>GAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGGTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCACGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E609071" ref_strand="-" ref_description="SGN-E609071 [25072]">
      <seq>cgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaagatttagagcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaattttcaaagtatgtattccaacttggcattttcgtaaagaagggacgcttgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83831" stop="81639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83532" g_stop="83516" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="119" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82160" g_stop="81930" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="350" r_length="231" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E609071" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609071" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83532" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGA-TCTTGAGAC</genome_strand>
        <mrna_strand>CGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGATTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTCAAAGTATGTATTCCAACTTGGCATTTTCGTAAAGAAGGGACGCTTGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E280689" ref_strand="-" ref_description="SGN-E280689 [cLEL-6-K6]">
      <seq>gttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagttagtattgccctttgaaagattaatgtgctctaaaattttaaaagtatgtgttccaacttggcatttttataaagaacctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83622" stop="81642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83322" g_stop="83300" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82160" g_stop="81933" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="250" r_length="227" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E280689" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280689" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83322" e_stop="83300"/>
          <exon e_start="82160" e_stop="81933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCT-TAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGA</genome_strand>
        <mrna_strand>GTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTAGTATTGCCCTTTGAAAGATTAATGTGCTCTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAAC--CTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E341393" ref_strand="+" ref_description="SGN-E341393 [cTOE-23-B5]">
      <seq>ccacacactatgggtgcggtgtcgaagactgagcttacatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcatctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagagttagagcaaggaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgtgttccaacttggcatttttataaagaacggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83910" stop="81636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83610" g_stop="83516" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="197" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82160" g_stop="81936" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="422" r_length="225" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E341393" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83610" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCT</genome_strand>
        <mrna_strand>CCACACACTATGGGTGCGGTGTCGAAGACTGAGCTTACATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCATCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGAGTTAGAGCAAGGAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E578595" ref_strand="+" ref_description="SGN-E578595 [85714]">
      <seq>ctcagttgagaaagcttaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttagacagttacttgagaggctattagtggtagcttcatttttgatatttcaatagttagatcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgctttaaatttttcaaagtatgtattccaaacttgggcatttttattaaagaagggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84256" stop="81637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83956" g_stop="83900" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="192" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="294" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81937" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="522" r_length="228" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E578595" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83956" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCA-TTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGC-TTAAAATTTTAAAAGTATGTGTTCC-AACTT-GGCATTTTTA-TAAAGAACGGATC</genome_strand>
        <mrna_strand>CTCAGTTGAGAAAGCTTAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAAC-AGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTTGATATTTCAATAGTTAGATCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTTAAATTTTTCAAAGTATGTATTCCAAACTTGGGCATTTTTATTAAAGAAGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E620974" ref_strand="+" ref_description="SGN-E620974 [71681]">
      <seq>tgatcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttagacagttacttgagaggctattagtggtagcttcattttgatatttcaatatttagatcaagtaaaattttgggaccttctatcttaggttttattgccctttgaaagattaatgtgcttaaaatttttaaagtatgtattccaacttggcatttttataaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84232" stop="81644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83933" g_stop="83900" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="170" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="272" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81944" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="488" r_length="216" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E620974" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83933" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGA</genome_strand>
        <mrna_strand>TGATCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAATATTTAGATCAAGTAAAATTTTGGGACCTTCTATCTTAGGTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTTAAAGTATGTATTCCAACTTGGCATTTTTATAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E353038" ref_strand="+" ref_description="SGN-E353038 [cTOS-14-D3]">
      <seq>gaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcagggtcaagaccaatttcagagaaagtactgaagcagctcccaggaagaagggagtagcttctgcttgaggccttccagacagttacttgagaaggtattagtggtagcttccttttgatatttccagtggtagaagcagtaaaattttgggaccctctatcttagtttttattgccctttgaaagaataatgtgcttaaaatttttaaagtatgtgttcccacttggcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84234" stop="81652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83934" g_stop="83900" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="171" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="273" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81952" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="482" r_length="209" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E353038" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83934" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTT</genome_strand>
        <mrna_strand>GAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGGTCAAGACCAATTTCAGAGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCCAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCCAGACAGTTACTTGAGAAGGTATTAGTGGTAGCTTCCTTTTGATATTTCCAGTGGTAGAAGCAGTAAAATTTTGGGACCCTCTATCTTAGTTTTTATTGCCCTTTGAAAGAATAATGTGCTTAAAATTTTTAAAGTATGTGTTCCCACTTGGCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E277586" ref_strand="+" ref_description="SGN-E277586 [cLER-6-K20]">
      <seq>ttgagaaagctcaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaattggagtgtgaaggctatccggagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacagttacttgagaggctattagtggtagcttcattttgatatttcaagtgttagagcaagtaaaattttgggaccttctatcttagtttttattgccctttgaaagattaatgtgcttaaaattttaaaagtatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84251" stop="81670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83951" g_stop="83900" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="188" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="290" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81970" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="481" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E277586" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83951" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGT</genome_strand>
        <mrna_strand>TTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAATTGGAGTGTGAAGGCTATCCGGAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E620960" ref_strand="+" ref_description="SGN-E620960 [71667]">
      <seq>tgccgcagttctcagttgagaaagcttaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggcctttagacagttacttgagaggctattagtggtagcttcatgccgatatttcaatagttagatcaagtagaatccagggaccttctatcttaggtatcattgccctttgaaagattaatgtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84265" stop="81688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83966" g_stop="83900" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="203" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="305" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="81988" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="477" r_length="172" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E620960" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83966" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="81988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTT</genome_strand>
        <mrna_strand>TGCCGCAGTTCTCAGTTGAGAAAGCTTAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTT-TAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATGCCGATATTTCAATAGTTAGATCAAGTAGAATCCAGGGACCTTCTATCTTAGGTATCATTGCCCTTTGAAAGATTAATGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E317699" ref_strand="+" ref_description="SGN-E317699 [cTOB-8-I18]">
      <seq>gaggtcgctagggtttctgcaactgtatcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgctggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacaggtacttgagaggctattagtggtagcttcatttcgatatttcaagtgctagagcaagttaaagtttgggaccttctatcttagttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84234" stop="81714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83934" g_stop="83900" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="171" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="273" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="82014" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="420" r_length="147" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E317699" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83934" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="82014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTA</genome_strand>
        <mrna_strand>GAGGTCGCTAGGGTTTCTGCAACTGTATCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCTGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGGTACTTGAGAGGCTATTAGTGGTAGCTTCATTTCGATATTTCAAGTGCTAGAGCAAGTTAAAGTTTGGGACCTTCTATCTTAGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E289255" ref_strand="+" ref_description="SGN-E289255 [cLES-18-E18]">
      <seq>ggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83881" stop="81809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83581" g_stop="83516" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="168" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82160" g_stop="82109" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="220" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E289255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83581" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="82109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCG</genome_strand>
        <mrna_strand>GGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E551231" ref_strand="+" ref_description="SGN-E551231 [TUS-55-O20]">
      <seq>aagcttccgtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtacacatattatagtgtttctgcattttaagatttgctaatttactttttatttangattgagtgtgcctttggtatggataacattgtttatagaatttatgaaatcattttcgagtgattgcttacttctaaaatgggaaaccttatttcctctagttatagacaaaagtcattttactttacagatatcccatatacttgcctagaccaatatttagatattgttttcaaccttcattgctaatatgactactacctctttctcatctgttaagttgttcaactgggcacaatgtttaagaagtttaaaaaataatgtgtttttaaagatagaaagttgtcgattcctttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83937" stop="82641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83637" g_stop="83516" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83401" g_stop="82941" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="583" r_length="461" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E551231" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83637" e_stop="83516"/>
          <exon e_start="83401" e_stop="82941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTT</genome_strand>
        <mrna_strand>AAGCTTCCGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTANGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACCAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E689061" ref_strand="+" ref_description="SGN-E689061 [t3_tus_55_O20]">
      <seq>aagcttccgtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtacacatattatagtgtttctgcattttaagatttgctaatttactttttatttangattgagtgtgcctttggtatggataacattgtttatagaatttatgaaatcattttcgagtgattgcttacttctaaaatgggaaaccttatttcctctagttatagacaaaagtcattttactttacagatatcccatatacttgcctagaccaatatttagatattgttttcaaccttcattgctaatatgactactacctctttctcatctgttaagttgttcaactgggcacaatgtttaagaagtttaaaaaataatgtgtttttaaagatagaaagttgtcgattcctttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83937" stop="82641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83637" g_stop="83516" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83401" g_stop="82941" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="583" r_length="461" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E689061" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83637" e_stop="83516"/>
          <exon e_start="83401" e_stop="82941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTT</genome_strand>
        <mrna_strand>AAGCTTCCGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTANGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACCAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E264687" ref_strand="+" ref_description="SGN-E264687 [cLEG-72-I9]">
      <seq>ctgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgcaggttcaagaccaatttcagagaaggtacacatattatagtgtttctgcattttaagatttgctaatttactttttatttaggattgagtgtgcctttggtatggataacattgtttatagaatttatgaaatcattttcgagtgattgcttacttctaaaatgggaaaccttatttcctctagttatagacaaaagtcattttactttacagatatcccatatacttgcctagacaaatattagatattgttttcaaccttcattgctaatatgactactacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83963" stop="82739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83912" g_stop="83900" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="149" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83039" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="511" r_length="362" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E264687" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83912" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCT</genome_strand>
        <mrna_strand>CTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATA-TTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E566437" ref_strand="+" ref_description="SGN-E566437 [4876]">
      <seq>tgggtcaagggaacaggaagcttcgcgtcaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttggtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaactggaactggccggatgaggtatcttcgtaacgtccctcggcagttcaagaccaatttcagagaaggtactgaagcagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83952" stop="82996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83901" g_stop="83900" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="142" r_length="140" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="244" r_length="102" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E566437" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83901" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGT-AAGGGAACAGGAAGCTTCG-GT-AAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTT-GTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG</genome_strand>
        <mrna_strand>TG........................................................................................................................................................................................................................................................GGTCAAGGGAACAGGAAGCTTCGCGTCAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTGGAACTGGCCGGATGAGGTATCTTCGTAACGTCCCTCGGCAGTTCAAGACCAATTTCAGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E284743" ref_strand="+" ref_description="SGN-E284743 [cLES-3-M3]">
      <seq>gttctcatttgagaaatctcaggaggaggtcgctagggtttgtgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatcttcagaagagccgttgctctgcttgtgcttaccctgctgcccgttaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgttcctcgctggttcaagaccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84259" stop="83009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83959" g_stop="83900" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="196" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83309" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="289" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E284743" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83959" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATT</genome_strand>
        <mrna_strand>GTTCTCATTTGAGAAATCTCAGGAGGAGGTCGCTAGGGTTTGTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTTCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTTAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTTCCTCGCTGGTTCAAGACCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E459597" ref_strand="+" ref_description="SGN-E459597 [cPRO-28-I4]">
      <seq>gcaggcacaaccctaaaagccttcttccttcactaccaaactataagcactgcctagatcgccgcagttctcagttgagaaagcttaggaggaggtcgctagggtttctgcaactgtagcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgnctctgcttgtgcttaccctgccgcccgtaaaaggacatacaactggagtgtgaaggctattcgcagaaagacaacttggaactgggccggatgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84323" stop="83046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84025" g_stop="83900" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="263" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83346" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="321" r_length="58" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E459597" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84025" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTG-CTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAAC-TGGAACT-GGCCGCATGAGG</genome_strand>
        <mrna_strand>GCAGGCACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTTAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGNCTCTGCTTGTGCTTACCCTGCCGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATTCGCAGAAAGACAACTTGGAACTGGGCCGGATGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E436631" ref_strand="+" ref_description="SGN-E436631 [STM-63-E6]">
      <seq>agtagaagtttcaggattgaaaaatgacgaccaaagcagtcatgatgaaagtgcattatctggtttccaagcattagttaacatgttactgtcactgacaaataaagatggtgatggaagaataataatatcaaggccaaggccaaggccaaaatgctcaatgcaacaaggagggtatttgaaatatgtcatgctcacaggagaaaagatattttctgagatcttgaatcaagctcatgctgtcatattggctggtgggactttacaacctatagaggaaacaaaagaacgcctatttccttggttaccaccggatcagttgcatttcttttcctgtggtcatatcatcccatctgcaaacattctaccaattgttgttcctcaggggccttctggccactcctttgattttagttacagcgccagaagctcatcagtcatgatacaagaactagggcttttggtctccaatttggtaaatgtagttcctggaggcatggttcttttcttctcatcatttgactacgaaggccaggtctatgatgcatggaaggagtcgggcatcattggaagaattatgaaaaagaagcgcatatttagagaacctagaagaagtacagatgtggaaactgttttgaaggaatacnaggaaacaattgatgcactgtcccatagaagttctaagcgggatcccgaaatcagaaatggtgcaattctccttgctattgtgggtgggaaagtatcagaaggtatcaacttcagcgatgggatgggtcgatgcatagtcatggttggattgccctatcctagtcctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="87526" stop="89256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87825" g_stop="88038" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88039" i_stop="88128" i_length="90">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.618" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88129" g_stop="88350" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="442" r_length="222" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88351" i_stop="88580" i_length="230">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88581" g_stop="88956" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="818" r_length="376" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E436631" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87825" e_stop="88038"/>
          <exon e_start="88129" e_stop="88350"/>
          <exon e_start="88581" e_stop="88956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAGAAGTTTCAGGATTGAAAAATGACGATCAAAGCAGTCATGATGAAAGTGCATTATCTGGTTTCCAAGCATTAGTTAACATGTTACTGTCACTAACAAATAAAGATGGTGATGGAAGAATAATAATAT------CAAGGCCAAGGCCAAAATGCTCAATGCAACAAGGAGGGTATTTGAAATATGTCATGCTCACAGGAGAAAAGATATTTTCTGAGGTTTGCTAGCAACTTCATCTTTTTACATTCCAAAGTTCCCCCGCAAAGGCATTTATGGAAAACCATTTTCTTCTGCACTACTACTTGCAGATCTTGAATCAAGCTCATGCTGTCATATTTGCTGGCGGGACTTTGCAACCTATAGAGGAAACAAAAGAACGCCTGTTTCCTTGGTTACCACCGGATCAGTTGCATTTCTTTTCCTGTGGTCATATCATCCCATCTGCAAACATTCTACCAGTTGTTGTTCCTCAGGGGCCTTCTGGCCACTCCTTTGATTTTAGTTACAGCGCCAGAAGCTCATCAGTCATGGTATGCAAGTCTTCCATCATATATGCCTGTTTTAAGTAAAGAATTCCACAACTGAATTCTCCCATTGTCTGTGAATGTGCTACATGGATACTGCATTCACTTATGTTATCCCAGCAAAATTCCAGATTTCCAGTTTCCATTAATTAGAAGTTGTTGCTTTGACATTCAGTTAAAATATTACCGTAAAGTACACTCTTGAATCTGACATACTCATGAACCTATATTGGCAGATAAAAGAACTAGGGCTTTTGGTCTCCAATTTGGTAAATGTAGTTCCTGAAGGCATGGTTCTTTTCTTCTCATCATTTGACTACGAAGGCCAGGTCTATGATGCATGGAAGGAGTCGGGCATCATTGGAAGAATTATGAAAAAGAAGCGTATATTTAGAGAACCTAGAAGAAGTACAGATGTGGAAACTGTTTTGAAGGAATACAAGGAAACAATTGATGCACTGTCCCATAGAAGTTCTAAGCGGGATCCTGAATCAAGAAATGGTGCAATTCTCCTTGCTATTGTGGGTGGGAAAGTATCAGAAGGTATCAACTTCAGCGATGGGATGGGTCGATGTATAGTCATGGTTGGATTGCCCTATCCTAGTCCTGCTG</genome_strand>
        <mrna_strand>AGTAGAAGTTTCAGGATTGAAAAATGACGACCAAAGCAGTCATGATGAAAGTGCATTATCTGGTTTCCAAGCATTAGTTAACATGTTACTGTCACTGACAAATAAAGATGGTGATGGAAGAATAATAATATCAAGGCCAAGGCCAAGGCCAAAATGCTCAATGCAACAAGGAGGGTATTTGAAATATGTCATGCTCACAGGAGAAAAGATATTTTCTGAG..........................................................................................ATCTTGAATCAAGCTCATGCTGTCATATTGGCTGGTGGGACTTTACAACCTATAGAGGAAACAAAAGAACGCCTATTTCCTTGGTTACCACCGGATCAGTTGCATTTCTTTTCCTGTGGTCATATCATCCCATCTGCAAACATTCTACCAATTGTTGTTCCTCAGGGGCCTTCTGGCCACTCCTTTGATTTTAGTTACAGCGCCAGAAGCTCATCAGTCATG......................................................................................................................................................................................................................................ATACAAGAACTAGGGCTTTTGGTCTCCAATTTGGTAAATGTAGTTCCTGGAGGCATGGTTCTTTTCTTCTCATCATTTGACTACGAAGGCCAGGTCTATGATGCATGGAAGGAGTCGGGCATCATTGGAAGAATTATGAAAAAGAAGCGCATATTTAGAGAACCTAGAAGAAGTACAGATGTGGAAACTGTTTTGAAGGAATACNAGGAAACAATTGATGCACTGTCCCATAGAAGTTCTAAGCGGGATCCCGAAATCAGAAATGGTGCAATTCTCCTTGCTATTGTGGGTGGGAAAGTATCAGAAGGTATCAACTTCAGCGATGGGATGGGTCGATGCATAGTCATGGTTGGATTGCCCTATCCTAGTCCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E405365" ref_strand="+" ref_description="SGN-E405365 [PPC-18-E3]">
      <seq>tagaagtttcaggattgaaaaatgacgaccaaagcagtcatgatgaaagtgcattatctggtttccaagcattagttaacatgttactgtcactgacaaataaagatggtgatggaagaataataatatcaaggccaaggccaaggccaaaatgctcaatgcaacaaggagggtatttgaaatatgtcatgctcacaggagaaaagatattttctgagatcttgaatcaagctcatgctgtcatattggctggtgggactttacaacctatagaggaaacaaaagaacgcctatttccttggttaccaccggatcagttgcatttcttttcctgtggtcatatcatcccatctgcaaacattctaccaattgttgttcctcaggggccttctggccactcctttgattttagttacagcgccagaagctcatcagtcatgatacaagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="87527" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87827" g_stop="88038" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88039" i_stop="88128" i_length="90">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.618" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88129" g_stop="88350" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="440" r_length="222" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88351" i_stop="88580" i_length="230">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88581" g_stop="88591" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="451" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E405365" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87827" e_stop="88038"/>
          <exon e_start="88129" e_stop="88350"/>
          <exon e_start="88581" e_stop="88591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGTTTCAGGATTGAAAAATGACGATCAAAGCAGTCATGATGAAAGTGCATTATCTGGTTTCCAAGCATTAGTTAACATGTTACTGTCACTAACAAATAAAGATGGTGATGGAAGAATAATAATAT------CAAGGCCAAGGCCAAAATGCTCAATGCAACAAGGAGGGTATTTGAAATATGTCATGCTCACAGGAGAAAAGATATTTTCTGAGGTTTGCTAGCAACTTCATCTTTTTACATTCCAAAGTTCCCCCGCAAAGGCATTTATGGAAAACCATTTTCTTCTGCACTACTACTTGCAGATCTTGAATCAAGCTCATGCTGTCATATTTGCTGGCGGGACTTTGCAACCTATAGAGGAAACAAAAGAACGCCTGTTTCCTTGGTTACCACCGGATCAGTTGCATTTCTTTTCCTGTGGTCATATCATCCCATCTGCAAACATTCTACCAGTTGTTGTTCCTCAGGGGCCTTCTGGCCACTCCTTTGATTTTAGTTACAGCGCCAGAAGCTCATCAGTCATGGTATGCAAGTCTTCCATCATATATGCCTGTTTTAAGTAAAGAATTCCACAACTGAATTCTCCCATTGTCTGTGAATGTGCTACATGGATACTGCATTCACTTATGTTATCCCAGCAAAATTCCAGATTTCCAGTTTCCATTAATTAGAAGTTGTTGCTTTGACATTCAGTTAAAATATTACCGTAAAGTACACTCTTGAATCTGACATACTCATGAACCTATATTGGCAGATAAAAGAACT</genome_strand>
        <mrna_strand>TAGAAGTTTCAGGATTGAAAAATGACGACCAAAGCAGTCATGATGAAAGTGCATTATCTGGTTTCCAAGCATTAGTTAACATGTTACTGTCACTGACAAATAAAGATGGTGATGGAAGAATAATAATATCAAGGCCAAGGCCAAGGCCAAAATGCTCAATGCAACAAGGAGGGTATTTGAAATATGTCATGCTCACAGGAGAAAAGATATTTTCTGAG..........................................................................................ATCTTGAATCAAGCTCATGCTGTCATATTGGCTGGTGGGACTTTACAACCTATAGAGGAAACAAAAGAACGCCTATTTCCTTGGTTACCACCGGATCAGTTGCATTTCTTTTCCTGTGGTCATATCATCCCATCTGCAAACATTCTACCAATTGTTGTTCCTCAGGGGCCTTCTGGCCACTCCTTTGATTTTAGTTACAGCGCCAGAAGCTCATCAGTCATG......................................................................................................................................................................................................................................ATACAAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E342775" ref_strand="+" ref_description="SGN-E342775 [cTOF-7-K8]">
      <seq>aagaatcagtaaacaacacgaggaaagtacagaaagaaaaaatggaagatgcattgcttcgaaacacaagtaaaggtgaggtattagtacagaagatgaaggaactagagatgatggatgaggaagatttggatcaaatgatggacataaaagaagttctctactactactcttacctaaaatgtccagtttaccttgacattgttgacaggtatttcatggacatgtataatgagttatcacttccacagacattcatcaatgtcaacagttaaatgttaagtcttggtcacattaagctctagaaactacagagaaaatgtttttgcttactaatgaaagttttcgagcttagctaacttcttttgtctgttaattgccatgccatgtacttctatattgaaaaatttcagaaaacctcattagatctgagttaatttctcagacgatcattcaactagtagttattacctcagaaaattggaatcaagaagtaaagtgactttcagagttgacatttattaattgaatgaccatatgaggaatcaaccctattcgatttgtatttcttgagcatgtttctttacaatgtcaaataagttatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="90981" stop="92187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91281" g_stop="91887" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E342775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91281" e_stop="91887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCAGTAAACAACACGAGGAAAGTACAGAAAGAAAAAATGGAAGATGCATTGCTTCGAAACACAAGTAAAGGTGAGGTATTAGTACAGAAGATGAAGGAACTAGAGATGATGGATGAGGAAGATTTGGATCAAATGATGGACATAAAAGAAGTTCTCTACTACTACTCTTACCTAAAATGTCCAGTTTACCTTGACATTGTTGACAGGTATTTCATGGACATGTATAATGAGTTATCACTTCCACAGACATTCATCAATGTCAACAGTTAAATGTTAAGTCTTGGTCACATTAAGCTCTAGAAACTACAGAGAAAATGTTTTTGCTTACTAATGAAAGTTTTCGAGCTTAGCTAACTTCTTTTGTCTGTTAATTGCCATGCCATGTACTTCTATATTGAAAAATTTCAGAAAACCTCATTAGATCTGAGTTAATTTCTCAGACGATCATTCAACTAGTAGTTATTACCTCAGAAAATTGGAATCAAGAAGTAAAGTGACTTTCAGAGTTGACATTTATTAATTGAATGACCATATGAGGAATCAACCCTATTCGATTTGTATTTCTTGAGCATGTTTCTTTACAATGTCAAATAAGTTATTTG</genome_strand>
        <mrna_strand>AAGAATCAGTAAACAACACGAGGAAAGTACAGAAAGAAAAAATGGAAGATGCATTGCTTCGAAACACAAGTAAAGGTGAGGTATTAGTACAGAAGATGAAGGAACTAGAGATGATGGATGAGGAAGATTTGGATCAAATGATGGACATAAAAGAAGTTCTCTACTACTACTCTTACCTAAAATGTCCAGTTTACCTTGACATTGTTGACAGGTATTTCATGGACATGTATAATGAGTTATCACTTCCACAGACATTCATCAATGTCAACAGTTAAATGTTAAGTCTTGGTCACATTAAGCTCTAGAAACTACAGAGAAAATGTTTTTGCTTACTAATGAAAGTTTTCGAGCTTAGCTAACTTCTTTTGTCTGTTAATTGCCATGCCATGTACTTCTATATTGAAAAATTTCAGAAAACCTCATTAGATCTGAGTTAATTTCTCAGACGATCATTCAACTAGTAGTTATTACCTCAGAAAATTGGAATCAAGAAGTAAAGTGACTTTCAGAGTTGACATTTATTAATTGAATGACCATATGAGGAATCAACCCTATTCGATTTGTATTTCTTGAGCATGTTTCTTTACAATGTCAAATAAGTTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E369861" ref_strand="+" ref_description="SGN-E369861 [TUS-26-D13]">
      <seq>tttttttttactacataaatgaaagttacattacactattttaatcttggatgttaaaccatgtccacaggaagtgcagttgatacgaaaagactgatattacatttcagcttgaggtataaaccatacaattggtataatgaataatataaaatgagacaacacagctcaatgactacttactcctatattagaatgcattttcagtttgaatattcgcgtgaacttctttgttgttgttgatgaaaaggcaccttaaggcagtttcataggcagtgaatatagccccattcactacaaatgctctggcaactgcagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="91865" stop="92779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92159" g_stop="92479" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E369861" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92159" e_stop="92479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGTATACTACATAAATGAAAGTTACATTACACTATTTTAATCTTGGATGTTAAACCATGTCCACAGGAAGTGCAGTTGATACGAAAAGACTGATATTACATTTCAGCTTGAGGTATAAACCATACAATTGGTATAATGAATAATATAAAATGAGACAACACAGCTCAATGACTACTTACTCCTATATTAGAATGCATTTTCAGTTTGAATATTCGCGTGAACTTCTTTGTTGTTGTTGATGAAAAGGCACCTTAAGGCAGTTTCATAGGCAGTGAATATAGCCCCATTCACTACAAATGCTCTGGCAACTGCAGTTC</genome_strand>
        <mrna_strand>TTTTTTTTTACTACATAAATGAAAGTTACATTACACTATTTTAATCTTGGATGTTAAACCATGTCCACAGGAAGTGCAGTTGATACGAAAAGACTGATATTACATTTCAGCTTGAGGTATAAACCATACAATTGGTATAATGAATAATATAAAATGAGACAACACAGCTCAATGACTACTTACTCCTATATTAGAATGCATTTTCAGTTTGAATATTCGCGTGAACTTCTTTGTTGTTGTTGATGAAAAGGCACCTTAAGGCAGTTTCATAGGCAGTGAATATAGCCCCATTCACTACAAATGCTCTGGCAACTGCAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E214011" ref_strand="+" ref_description="SGN-E214011 [cLEC-80-J20]">
      <seq>cgccactgaaggacctctggctctatacagaggcatggctgctcctctcgcttccgtcacatttcagaacgccatggtatttcagatttatgcagtgctatctcgagcattggacaggaatgttccagccagtgatccaccctcctacaaaggagtggccttaggtggatttggaacaggagcattacaaagcctaatgctcactcctgtcgaacttgtgaaaattcgacttcagttgcaacagagaaacatcctggataacaaaaatcaaatgactagttgtaagggtccaactgatgtggcaagaaacatattcagacaagaaggatggaggggaatttatcgcggattaacaattacagtcctcagagatgcaccagctcacggcctatatttctggacatacgagtatgtaagagagcaacttcatccaggatgtcgtaagaatggtcaagagagctttagaacaatgcttatagcaggtggtcttgcaggagtagctagctggatatgctgctatcccttagatgttattaaaacccgattccaggctcagtcacaatctacaccattgagatatactggcattgttgattgtttcaggagaagtgtgaaacaagagggatataatgtgctctggagaggtttgggaactgcagttgccagagcatttgtagtgaatggggctatattcactgccctatgaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="95546" stop="92119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95246" g_stop="95180" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95179" i_stop="93063" i_length="2117">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93062" g_stop="92419" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="711" r_length="644" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E214011" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95246" e_stop="95180"/>
          <exon e_start="93062" e_stop="92419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCACTGAAGGACCTCTGGCTCTATACAGAGGCATGGCTGCTCCTCTCGCTTCCGTCACATTTCAGGTCATTCCTTGTTTTTATCCAGCAGTAATTACGGTTTTTACTAATTGTATATATATAAAATTGAAGTTGTCAAAATTTTGAATTCGCATCTGAATCACACGCGTAAAATGAATGTTTATTCATGTATATAAATCAGACTTCTCCCCTGAGTTTCTCCTAGCTAAGCTTATTAGAGCAGGTGGATTCCATCAAACTCATTATATTCAAATAAATATGTTTTATGTTTAAAATTCATAAAAATAAAATTTTAATTTCACTGCGTATTACTTTGCCCTGTTTCTCGCCGAAGATGAGGAGTCCAAAATTTCACAGTTACAAAAAGCAAACATCGTAAAAGATTGAGATGGGTATTACGTGGAGATAAGTGAAGAGGTCTAATAACACGTAATAGTTATATTTTGTAACTACCAAACAAAGAGAGATAGAGACTGTTGGGTCCTCAATTGGATTTTTTACGTTCACGGAACTAATACCAAATTAAGCTTGCTTAACAATAATAATAATAATAAAAGTAATAAATATTAGAATTTAGAGACCACGAGTCTCCATCATAAATAAATAAATAAATAAATAAATAAATGGAGTCTTAGTCATCAAATCTTCATTCATTGGTGATTCATATCCGTTTGTGGAAGAAAAAAAAGGGAATTAAGTCATTAACTAGTAACTAGTATTCTAGCAGGAAAAGAATGGACATTCTCAAATGACATGAGCACTTAAACATCCTTTATTTTATTATATGAACTATTTTCCCACACCACCAATTCTATTTAGATGGTTGTTACGTATTATTTAATACTGTATGATATTATATTGTTTGGATGAATATAATTCTATTTAGATGGTTGTTACGTATTATTTAATACTGTATGATATTATATTGTTTGGATGAATATAATGTATGTTTAACAGAGTAAAGTTAGAAAAAGTAGGATAAAAGGTAAAATAGGACCTACAAGCTCTACGATAAAAGGTAAAATAGGATGTACAAGCTCTAGGGTTTCAAGAAGCAAACCTGAAAAATATGCAACAATATTCTATCAACAACAGGGAGCAGCTAAATGGATATTCATTACAAGATTAGCTATACTGAACATGCTATATATCAACGATAGGCTAATGAATTGGGGTGTCACAAATAACCAACAGTATGTCTTATGTAGTGAGGGTATTGAGTCAAGTGAACATCTCTTTTTTACTTGTGATTACTCTAAAAACATATGGACACAGCTGTTATATTGACAAGGAATAACTAGAGACCAGCTAGCACTTGACAAGATGAGCTTGAGTGGGCCAACAGAAATGCACAAGGAAACGGAGCAGCACACCACTATCTTTCGAATGAGCATTGCAGCTGCAGTTAACTATATCTGGACGGAAAGGAATAATCAGGTCTTCCAGGCTAAGTCCAGCAAACCACACATGGTAACCAAAAGAATAGTGCAAGAGAGATGTTCGAAGCATAAGCTTACAAACAAACTAGTAGGACTAGATCACTATGCCTAGACCTTTTGTAGATATGTAGTCTTTGAAGAAATGATTGTTAGTTCATTGTTTGGTTGCCACACCAATACATATTTGTACTGAATGTTAATAAAATAGGACTACTAAACAAAAAATAAGAGCAAGATGAGGGGAGAAATAGGTAACATTCGATTGCACCAAAATTAAAGTTATAATTTAAACAAGGAAAAAGGGTCTGATATACCTCACAACTTTGCCATTTGGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATGACCTTGCCATAATACAAACGGCTCACATATTTAAGTCAAAAAAATAATATATAAGTGAAGATGGGCTATCAACTGGAGTATTATTCACTTCTCATGAGAACATACACTATAGGTTTAAATTGTATTTCATGCATAATTTGATATGTTAATTTTTTGCAACTTTAGCTAATTTGCTGCCACAGTTTACAGATTGGTACAAGTTTGCTACATATGAACCTTGAGCAAATCTTCAACTTGATACATGTAACTCATTGTTGTTCTTATTTGTAAGACTAATCGATATAGGGTCTAATAATCCCTGAACTTAATTAATTTCTACAATGTGTAAAATAGTTTCTTTGCTATTGCAGAACGCCATGGTATTTCAGATTTATGCAGTGCTATCTCGAGCATTGGACAGGAATGTTCCAGCCAGTGATCCACCCTCCTACAAAGGAGTGGCCTTAGGTGGATTTGGAACAGGAGCATTACAAAGCCTAATGCTCACTCCTGTCGAACTTGTGAAAATTCGACTTCAGTTGCAACAGAGAAACATCCTGGATAACAAAAATCAAATGACTAGTTGTAAGGGTCCAACTGATGTGGCAAGAAACATATTCAGACAAGAAGGATGGAGGGGAATTTATCGCGGATTAACAATTACAGTCCTCAGAGATGCACCAGCTCACGGCCTATATTTCTGGACATACGAGTATGTAAGAGAGCAACTTCATCCAGGATGTCGTAAGAATGGTCAAGAGAGCTTTAGAACAATGCTTATAGCAGGTGGTCTTGCAGGAGTAGCTAGCTGGATATGCTGCTATCCCTTAGATGTTATTAAAACCCGATTCCAGGCTCAGTCACAATCTACACCATTGAGATATACTGGCATTGTTGATTGTTTCAGGAGAAGTGTGAAACAAGAGGGATATAATGTGCTCTGGAGAGGTTTGGGAACTGCAGTTGCCAGAGCATTTGTAGTGAATGGGGCTATATTCACTG-CCTATGAAACTGC</genome_strand>
        <mrna_strand>CGCCACTGAAGGACCTCTGGCTCTATACAGAGGCATGGCTGCTCCTCTCGCTTCCGTCACATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCATGGTATTTCAGATTTATGCAGTGCTATCTCGAGCATTGGACAGGAATGTTCCAGCCAGTGATCCACCCTCCTACAAAGGAGTGGCCTTAGGTGGATTTGGAACAGGAGCATTACAAAGCCTAATGCTCACTCCTGTCGAACTTGTGAAAATTCGACTTCAGTTGCAACAGAGAAACATCCTGGATAACAAAAATCAAATGACTAGTTGTAAGGGTCCAACTGATGTGGCAAGAAACATATTCAGACAAGAAGGATGGAGGGGAATTTATCGCGGATTAACAATTACAGTCCTCAGAGATGCACCAGCTCACGGCCTATATTTCTGGACATACGAGTATGTAAGAGAGCAACTTCATCCAGGATGTCGTAAGAATGGTCAAGAGAGCTTTAGAACAATGCTTATAGCAGGTGGTCTTGCAGGAGTAGCTAGCTGGATATGCTGCTATCCCTTAGATGTTATTAAAACCCGATTCCAGGCTCAGTCACAATCTACACCATTGAGATATACTGGCATTGTTGATTGTTTCAGGAGAAGTGTGAAACAAGAGGGATATAATGTGCTCTGGAGAGGTTTGGGAACTGCAGTTGCCAGAGCATTTGTAGTGAATGGGGCTATATTCACTGCCCTATG-AACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E622748" ref_strand="+" ref_description="SGN-E622748 [73118]">
      <seq>tttagagtccgtcaacagagttgtacgcctggctctgctttcaacatcctccgccatgttgccgccactgaaggtcccctggctctctacagaggcatggctgctcctctcgcttccgtcacatttcagaatgctatggtatttcagatttatgcagtgctatcgcgagcatttgacaggaatgctccagccagtgatccaccctcctacaaaggagtggccttaggtggatttggaacaggagcattacaaagcctaatgctcactcctgtcgaacttgtgaaaattcgactgcagttgcaacagagaaatatcctggataacaaaaaacaaaaaacaagttgtaagggtccaactgatgtggcaagaaacatattcagacaagaaggatggaggggaatttatcgcggattaacaattacagtcctcagagatgcaccagctcacggcctatatttctggacatacgagtatgttagagagcaacttcatccaggatgtcgtaagaatggtcaagagagctttagaacaatgcttatagcaggtggtcttgcaggagtagctagctggatatgctgctatccgctggatgttatcaaaactcgattccaagctcagtcacaatctacaccattgagatatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="95607" stop="92247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95308" g_stop="95180" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95179" i_stop="93063" i_length="2117">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93062" g_stop="92547" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="645" r_length="516" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E622748" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95308" e_stop="95180"/>
          <exon e_start="93062" e_stop="92547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGAGTCCGTCAACAGAGTTGTACGCCTGGTTCTGCTTTCAACATCCTCCGCCGTGTTGCCGCCACTGAAGGACCTCTGGCTCTATACAGAGGCATGGCTGCTCCTCTCGCTTCCGTCACATTTCAGGTCATTCCTTGTTTTTATCCAGCAGTAATTACGGTTTTTACTAATTGTATATATATAAAATTGAAGTTGTCAAAATTTTGAATTCGCATCTGAATCACACGCGTAAAATGAATGTTTATTCATGTATATAAATCAGACTTCTCCCCTGAGTTTCTCCTAGCTAAGCTTATTAGAGCAGGTGGATTCCATCAAACTCATTATATTCAAATAAATATGTTTTATGTTTAAAATTCATAAAAATAAAATTTTAATTTCACTGCGTATTACTTTGCCCTGTTTCTCGCCGAAGATGAGGAGTCCAAAATTTCACAGTTACAAAAAGCAAACATCGTAAAAGATTGAGATGGGTATTACGTGGAGATAAGTGAAGAGGTCTAATAACACGTAATAGTTATATTTTGTAACTACCAAACAAAGAGAGATAGAGACTGTTGGGTCCTCAATTGGATTTTTTACGTTCACGGAACTAATACCAAATTAAGCTTGCTTAACAATAATAATAATAATAAAAGTAATAAATATTAGAATTTAGAGACCACGAGTCTCCATCATAAATAAATAAATAAATAAATAAATAAATGGAGTCTTAGTCATCAAATCTTCATTCATTGGTGATTCATATCCGTTTGTGGAAGAAAAAAAAGGGAATTAAGTCATTAACTAGTAACTAGTATTCTAGCAGGAAAAGAATGGACATTCTCAAATGACATGAGCACTTAAACATCCTTTATTTTATTATATGAACTATTTTCCCACACCACCAATTCTATTTAGATGGTTGTTACGTATTATTTAATACTGTATGATATTATATTGTTTGGATGAATATAATTCTATTTAGATGGTTGTTACGTATTATTTAATACTGTATGATATTATATTGTTTGGATGAATATAATGTATGTTTAACAGAGTAAAGTTAGAAAAAGTAGGATAAAAGGTAAAATAGGACCTACAAGCTCTACGATAAAAGGTAAAATAGGATGTACAAGCTCTAGGGTTTCAAGAAGCAAACCTGAAAAATATGCAACAATATTCTATCAACAACAGGGAGCAGCTAAATGGATATTCATTACAAGATTAGCTATACTGAACATGCTATATATCAACGATAGGCTAATGAATTGGGGTGTCACAAATAACCAACAGTATGTCTTATGTAGTGAGGGTATTGAGTCAAGTGAACATCTCTTTTTTACTTGTGATTACTCTAAAAACATATGGACACAGCTGTTATATTGACAAGGAATAACTAGAGACCAGCTAGCACTTGACAAGATGAGCTTGAGTGGGCCAACAGAAATGCACAAGGAAACGGAGCAGCACACCACTATCTTTCGAATGAGCATTGCAGCTGCAGTTAACTATATCTGGACGGAAAGGAATAATCAGGTCTTCCAGGCTAAGTCCAGCAAACCACACATGGTAACCAAAAGAATAGTGCAAGAGAGATGTTCGAAGCATAAGCTTACAAACAAACTAGTAGGACTAGATCACTATGCCTAGACCTTTTGTAGATATGTAGTCTTTGAAGAAATGATTGTTAGTTCATTGTTTGGTTGCCACACCAATACATATTTGTACTGAATGTTAATAAAATAGGACTACTAAACAAAAAATAAGAGCAAGATGAGGGGAGAAATAGGTAACATTCGATTGCACCAAAATTAAAGTTATAATTTAAACAAGGAAAAAGGGTCTGATATACCTCACAACTTTGCCATTTGGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATGACCTTGCCATAATACAAACGGCTCACATATTTAAGTCAAAAAAATAATATATAAGTGAAGATGGGCTATCAACTGGAGTATTATTCACTTCTCATGAGAACATACACTATAGGTTTAAATTGTATTTCATGCATAATTTGATATGTTAATTTTTTGCAACTTTAGCTAATTTGCTGCCACAGTTTACAGATTGGTACAAGTTTGCTACATATGAACCTTGAGCAAATCTTCAACTTGATACATGTAACTCATTGTTGTTCTTATTTGTAAGACTAATCGATATAGGGTCTAATAATCCCTGAACTTAATTAATTTCTACAATGTGTAAAATAGTTTCTTTGCTATTGCAGAACGCCATGGTATTTCAGATTTATGCAGTGCTATCTCGAGCATTGGACAGGAATGTTCCAGCCAGTGATCCACCCTCCTACAAAGGAGTGGCCTTAGGTGGATTTGGAACAGGAGCATTACAAAGCCTAATGCTCACTCCTGTCGAACTTGTGAAAATTCGACTTCAGTTGCAACAGAGAAACATCCTGGATAACAAAAATCAAATGACTAGTTGTAAGGGTCCAACTGATGTGGCAAGAAACATATTCAGACAAGAAGGATGGAGGGGAATTTATCGCGGATTAACAATTACAGTCCTCAGAGATGCACCAGCTCACGGCCTATATTTCTGGACATACGAGTATGTAAGAGAGCAACTTCATCCAGGATGTCGTAAGAATGGTCAAGAGAGCTTTAGAACAATGCTTATAGCAGGTGGTCTTGCAGGAGTAGCTAGCTGGATATGCTGCTATCCCTTAGATGTTATTAAAACCCGATTCCAGGCTCAGTCACAATCTACACCATTGAGATATACT</genome_strand>
        <mrna_strand>TTTAGAGTCCGTCAACAGAGTTGTACGCCTGGCTCTGCTTTCAACATCCTCCGCCATGTTGCCGCCACTGAAGGTCCCCTGGCTCTCTACAGAGGCATGGCTGCTCCTCTCGCTTCCGTCACATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTATGGTATTTCAGATTTATGCAGTGCTATCGCGAGCATTTGACAGGAATGCTCCAGCCAGTGATCCACCCTCCTACAAAGGAGTGGCCTTAGGTGGATTTGGAACAGGAGCATTACAAAGCCTAATGCTCACTCCTGTCGAACTTGTGAAAATTCGACTGCAGTTGCAACAGAGAAATATCCTGGATAACAAAAAACAAAAAACAAGTTGTAAGGGTCCAACTGATGTGGCAAGAAACATATTCAGACAAGAAGGATGGAGGGGAATTTATCGCGGATTAACAATTACAGTCCTCAGAGATGCACCAGCTCACGGCCTATATTTCTGGACATACGAGTATGTTAGAGAGCAACTTCATCCAGGATGTCGTAAGAATGGTCAAGAGAGCTTTAGAACAATGCTTATAGCAGGTGGTCTTGCAGGAGTAGCTAGCTGGATATGCTGCTATCCGCTGGATGTTATCAAAACTCGATTCCAAGCTCAGTCACAATCTACACCATTGAGATATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E250709" ref_strand="+" ref_description="SGN-E250709 [cLEG-7-A14]">
      <seq>ggttctgctttcaacatcctccggggtgtttccgccactgaaggacctctggctctatacagaggcatggctgctcctctcgcttccgtcacatttcagaacgccatggtatttcagatttatgcagtgctatctcgagcattggacaggaatgttccagccagtgatccaccctcctacaaaggagtggccttaggtggatttggaacaggagcattacaaagcctaatgctcactcctgtcgaacttgtgaaaattcgacttcagttgcaacagagaaacatcctggataacaaaaatcaaatgactagttgtaagggtccaactgatgtggcaagaaacatattcagacaagaaggatggaggggaatttatcgcggattaacaattacagtcctcagagatgcaccagctcacggcctatatttctggacatacgagtatgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="95578" stop="92413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95278" g_stop="95180" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95179" i_stop="93063" i_length="2117">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93062" g_stop="92713" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="449" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E250709" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95278" e_stop="95180"/>
          <exon e_start="93062" e_stop="92713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTGCTTTCAACATCCTCCGCCGTGTTGCCGCCACTGAAGGACCTCTGGCTCTATACAGAGGCATGGCTGCTCCTCTCGCTTCCGTCACATTTCAGGTCATTCCTTGTTTTTATCCAGCAGTAATTACGGTTTTTACTAATTGTATATATATAAAATTGAAGTTGTCAAAATTTTGAATTCGCATCTGAATCACACGCGTAAAATGAATGTTTATTCATGTATATAAATCAGACTTCTCCCCTGAGTTTCTCCTAGCTAAGCTTATTAGAGCAGGTGGATTCCATCAAACTCATTATATTCAAATAAATATGTTTTATGTTTAAAATTCATAAAAATAAAATTTTAATTTCACTGCGTATTACTTTGCCCTGTTTCTCGCCGAAGATGAGGAGTCCAAAATTTCACAGTTACAAAAAGCAAACATCGTAAAAGATTGAGATGGGTATTACGTGGAGATAAGTGAAGAGGTCTAATAACACGTAATAGTTATATTTTGTAACTACCAAACAAAGAGAGATAGAGACTGTTGGGTCCTCAATTGGATTTTTTACGTTCACGGAACTAATACCAAATTAAGCTTGCTTAACAATAATAATAATAATAAAAGTAATAAATATTAGAATTTAGAGACCACGAGTCTCCATCATAAATAAATAAATAAATAAATAAATAAATGGAGTCTTAGTCATCAAATCTTCATTCATTGGTGATTCATATCCGTTTGTGGAAGAAAAAAAAGGGAATTAAGTCATTAACTAGTAACTAGTATTCTAGCAGGAAAAGAATGGACATTCTCAAATGACATGAGCACTTAAACATCCTTTATTTTATTATATGAACTATTTTCCCACACCACCAATTCTATTTAGATGGTTGTTACGTATTATTTAATACTGTATGATATTATATTGTTTGGATGAATATAATTCTATTTAGATGGTTGTTACGTATTATTTAATACTGTATGATATTATATTGTTTGGATGAATATAATGTATGTTTAACAGAGTAAAGTTAGAAAAAGTAGGATAAAAGGTAAAATAGGACCTACAAGCTCTACGATAAAAGGTAAAATAGGATGTACAAGCTCTAGGGTTTCAAGAAGCAAACCTGAAAAATATGCAACAATATTCTATCAACAACAGGGAGCAGCTAAATGGATATTCATTACAAGATTAGCTATACTGAACATGCTATATATCAACGATAGGCTAATGAATTGGGGTGTCACAAATAACCAACAGTATGTCTTATGTAGTGAGGGTATTGAGTCAAGTGAACATCTCTTTTTTACTTGTGATTACTCTAAAAACATATGGACACAGCTGTTATATTGACAAGGAATAACTAGAGACCAGCTAGCACTTGACAAGATGAGCTTGAGTGGGCCAACAGAAATGCACAAGGAAACGGAGCAGCACACCACTATCTTTCGAATGAGCATTGCAGCTGCAGTTAACTATATCTGGACGGAAAGGAATAATCAGGTCTTCCAGGCTAAGTCCAGCAAACCACACATGGTAACCAAAAGAATAGTGCAAGAGAGATGTTCGAAGCATAAGCTTACAAACAAACTAGTAGGACTAGATCACTATGCCTAGACCTTTTGTAGATATGTAGTCTTTGAAGAAATGATTGTTAGTTCATTGTTTGGTTGCCACACCAATACATATTTGTACTGAATGTTAATAAAATAGGACTACTAAACAAAAAATAAGAGCAAGATGAGGGGAGAAATAGGTAACATTCGATTGCACCAAAATTAAAGTTATAATTTAAACAAGGAAAAAGGGTCTGATATACCTCACAACTTTGCCATTTGGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATGACCTTGCCATAATACAAACGGCTCACATATTTAAGTCAAAAAAATAATATATAAGTGAAGATGGGCTATCAACTGGAGTATTATTCACTTCTCATGAGAACATACACTATAGGTTTAAATTGTATTTCATGCATAATTTGATATGTTAATTTTTTGCAACTTTAGCTAATTTGCTGCCACAGTTTACAGATTGGTACAAGTTTGCTACATATGAACCTTGAGCAAATCTTCAACTTGATACATGTAACTCATTGTTGTTCTTATTTGTAAGACTAATCGATATAGGGTCTAATAATCCCTGAACTTAATTAATTTCTACAATGTGTAAAATAGTTTCTTTGCTATTGCAGAACGCCATGGTATTTCAGATTTATGCAGTGCTATCTCGAGCATTGGACAGGAATGTTCCAGCCAGTGATCCACCCTCCTACAAAGGAGTGGCCTTAGGTGGATTTGGAACAGGAGCATTACAAAGCCTAATGCTCACTCCTGTCGAACTTGTGAAAATTCGACTTCAGTTGCAACAGAGAAACATCCTGGATAACAAAAATCAAATGACTAGTTGTAAGGGTCCAACTGATGTGGCAAGAAACATATTCAGACAAGAAGGATGGAGGGGAATTTATCGCGGATTAACAATTACAGTCCTCAGAGATGCACCAGCTCACGGCCTATATTTCTGGACATACGAGTATGTAAG</genome_strand>
        <mrna_strand>GGTTCTGCTTTCAACATCCTCCGGGGTGTTTCCGCCACTGAAGGACCTCTGGCTCTATACAGAGGCATGGCTGCTCCTCTCGCTTCCGTCACATTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCATGGTATTTCAGATTTATGCAGTGCTATCTCGAGCATTGGACAGGAATGTTCCAGCCAGTGATCCACCCTCCTACAAAGGAGTGGCCTTAGGTGGATTTGGAACAGGAGCATTACAAAGCCTAATGCTCACTCCTGTCGAACTTGTGAAAATTCGACTTCAGTTGCAACAGAGAAACATCCTGGATAACAAAAATCAAATGACTAGTTGTAAGGGTCCAACTGATGTGGCAAGAAACATATTCAGACAAGAAGGATGGAGGGGAATTTATCGCGGATTAACAATTACAGTCCTCAGAGATGCACCAGCTCACGGCCTATATTTCTGGACATACGAGTATGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E735140" ref_strand="+" ref_description="SGN-E735140 [LB14CB11]">
      <seq>gttacccgagagaacgtcctggacgattcgttcctcctgatgaagggcagagaagggaacaagtggagatacaagttgtaagcagagaagtatcaaatggaaatggatcatcagctgaagctggaacaatgaaacaatgtgtttgttcccctacacatcatccaggctcattcaggtgtaggcatcatcatgctgattacaaatgggctgctcaacagggaactattaagactgctgatcattagttccctacgtgaactcacatgtaaaaattcatgacattcatctgtcctgtatttactttattttctacgcttcttcatctatatgtgtgttttctttaccctggttatattaagacttgtaatatcattacgaaactgagtcactttcaagaaatagcctataaaatttcaaatagagttgatttctcggatggtcacttgttttagaaagtcactttctttgttgaagaaaatttgaatcagaagaaatgtgattttctaagataataactattagttgagtgaccatctgagaaatcaaccctcacacatgtgtttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="106651" stop="105485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106351" g_stop="105777" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E735140" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106351" e_stop="105777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCCGAGAGAACGTCCTGGACGATTCGTTCCTCCTGATGAAGGGCAGAGAAGGGAACAAGTGGAGATACAAGTTGTAAGCAGAGAAGTATCAAATGGAAATGGATCATCAGCTGAAGCTGGAACAATGAAACAATGTGTTTGTTCCCCTACACATCATCCAGGCTCATTCAGGTGTAGGCATCATCATGCTGATTACAAATGGGCTGCTCAACAGGGAACTATTAAGACTGCTGATCATTAGTTCCCTACGTGAACTCACATGTAAAAATTCATGACATTCATCTGTCCTGTATTTACTTTATTTTCTACGCTTCTTCATCTATATGTGTGTTTTCTTTACCCTGGTTATATTAAGACTTGTAATATCATTACGAAACTGAGTCACTTTCAAGAAATAGCCTATAAAATTTCAAATAGAGTTGATTTCTCGGATGGTCACTTGTTTTAGAAAGTCACTTTCTTTGTTGAAGAAAATTTGAATCAGAAGAAATGTGATTTTCTAAGATAATAACTATTAGTTGAGTGACCATCTGAGAAATCAACCCTCACACATGTGTTTCAAATTTTCAAT</genome_strand>
        <mrna_strand>GTTACCCGAGAGAACGTCCTGGACGATTCGTTCCTCCTGATGAAGGGCAGAGAAGGGAACAAGTGGAGATACAAGTTGTAAGCAGAGAAGTATCAAATGGAAATGGATCATCAGCTGAAGCTGGAACAATGAAACAATGTGTTTGTTCCCCTACACATCATCCAGGCTCATTCAGGTGTAGGCATCATCATGCTGATTACAAATGGGCTGCTCAACAGGGAACTATTAAGACTGCTGATCATTAGTTCCCTACGTGAACTCACATGTAAAAATTCATGACATTCATCTGTCCTGTATTTACTTTATTTTCTACGCTTCTTCATCTATATGTGTGTTTTCTTTACCCTGGTTATATTAAGACTTGTAATATCATTACGAAACTGAGTCACTTTCAAGAAATAGCCTATAAAATTTCAAATAGAGTTGATTTCTCGGATGGTCACTTGTTTTAGAAAGTCACTTTCTTTGTTGAAGAAAATTTGAATCAGAAGAAATGTGATTTTCTAAGATAATAACTATTAGTTGAGTGACCATCTGAGAAATCAACCCTCACACATGTGTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E734903" ref_strand="+" ref_description="SGN-E734903 [LB13DF05]">
      <seq>ccaatgtgttacccgagagaacgtcctggacgattcgttcctcctgatgaagggcagagaagggaacaagtggagatacaagttgtaagcagagaagtatcaaatggaaatggatcatcagctgaagctggaacaatgaaacaatgtgtttgttcccctacacatcatccaggctcattcaggtgtaggcatcatcatgctgattacaaatgggctgctcaacagggaactattaagactgctgatcattagttccctacgtgaactcacatgtaaaaattcatgacattcatctgtcctgtatttactttattttctacgcttcttcatctatatgtgtgttttctttaccctggttatattaagacttgtaatatcattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="106658" stop="52418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106358" g_stop="105957" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-E734903" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106358" e_stop="105957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATGTGTTACCCGAGAGAACGTCCTGGACGATTCGTTCCTCCTGATGAAGGGCAGAGAAGGGAACAAGTGGAGATACAAGTTGTAAGCAGAGAAGTATCAAATGGAAATGGATCATCAGCTGAAGCTGGAACAATGAAACAATGTGTTTGTTCCCCTACACATCATCCAGGCTCATTCAGGTGTAGGCATCATCATGCTGATTACAAATGGGCTGCTCAACAGGGAACTATTAAGACTGCTGATCATTAGTTCCCTACGTGAACTCACATGTAAAAATTCATGACATTCATCTGTCCTGTATTTACTTTATTTTCTACGCTTCTTCATCTATATGTGTGTTTTCTTTACCCTGGTTATATTAAGACTTGTAATATCATTACGAAACTGAGTCACTTTCAA</genome_strand>
        <mrna_strand>CCAATGTGTTACCCGAGAGAACGTCCTGGACGATTCGTTCCTCCTGATGAAGGGCAGAGAAGGGAACAAGTGGAGATACAAGTTGTAAGCAGAGAAGTATCAAATGGAAATGGATCATCAGCTGAAGCTGGAACAATGAAACAATGTGTTTGTTCCCCTACACATCATCCAGGCTCATTCAGGTGTAGGCATCATCATGCTGATTACAAATGGGCTGCTCAACAGGGAACTATTAAGACTGCTGATCATTAGTTCCCTACGTGAACTCACATGTAAAAATTCATGACATTCATCTGTCCTGTATTTACTTTATTTTCTACGCTTCTTCATCTATATGTGTGTTTTCTTTACCCTGGTTATATTAAGACTTGTAATATCATTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E558554" ref_strand="+" ref_description="SGN-E558554 [17913]">
      <seq>gtatgatctcctctaccgttcgtcccattttctttcttcttattattacagaggttgctcgctgccattagcaaaacctctactcattttctctctttttcgatctctctccggcactttgccacttagcgagcaattcgaattggaagatttctgcagctgagtagctggtggatctttaggattcttcacactcaaatctctgatttattgcctttttccaatagaattcgcattcgtcggtgaaaatgcctctaagattggagattaagaggaaacttgctcaaagatcagaaagggtaaaggccgtggatctacatcctacggagccatggatattgacaagtttatattcagggnaccatttgcatttggaactaccagacccagacaatggcacaatctttcgaagttactgaattaccagtaagatcagcgaaatttatagcacgcaaacagtggattgttgctggttccgatgacatgtttattcgtgtatacaattataataccatggataaggtcaaagtattcgagggcacacacagattatattaggtgtgtggctgttcatcctacactaccatatgtgctgtcatcatctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="115341" stop="118147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115641" g_stop="115896" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115897" i_stop="116119" i_length="223">
            <donor d_prob="0.954" d_score="0.84"/>
            <acceptor a_prob="0.591" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116120" g_stop="116140" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="272" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116141" i_stop="116235" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116236" g_stop="116297" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="334" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116298" i_stop="116555" i_length="258">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116556" g_stop="116610" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="390" r_length="56" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116611" i_stop="117515" i_length="905">
            <donor d_prob="0.937" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117516" g_stop="117552" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="427" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117553" i_stop="117664" i_length="112">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.792" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="117665" g_stop="117847" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="608" r_length="181" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E558554" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115641" e_stop="115896"/>
          <exon e_start="116120" e_stop="116140"/>
          <exon e_start="116236" e_stop="116297"/>
          <exon e_start="116556" e_stop="116610"/>
          <exon e_start="117516" e_stop="117552"/>
          <exon e_start="117665" e_stop="117847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGATCTCCTCTACCGTTCCTCCCATTTTCTTTCTTCTTATTATTACAGAGGTTGCTCGCTGCCATTAGCAAAACCTCTACTCATTTTTCTCTCTTTTCCGATCTCTCTCCGGCACTTTGCCACTTAGCGAGCAATTCGAATTTTGGAAGATTTCTGCAGCTGAGTAGCTGGTGGATCTTTAGGATTATTCACACTCAAATCTCTGATTTATTGCATTTTTTCCGATTAGAATTCGCATTATTCACTGAAAATGGTACGTCCATTAGTTTCAGTAGGTTATTAATGCGTTCGCATTATGTTAAAACTTAGATCTGATTCAAATCCAATTCGATTTAATGGTGGTAACGGATCACTATGTTGAGGATTGGAAAAATTCAATGTCGGTTCTGAGAATTAGTTGAGATCTGGTAATTTGTTGTTTACTAACTTAATCTCATTTCCTTTTTGTGTTTTTTTTTTCATTGGCGATGGCACAGCCTCTAAGATTGGAGATTAAGGTACTATACTTTTTCAGAATTCAAAATACTATAGGTGGATTAAATAGTTTTGCATTGCCCATTCGTACTAATGCTGACTGTGGTACTTTGATCAGAGGAAACTTGCTCAAAGATCAGAAAGGGTAAAGGCCGTGGATCTCCATCCTACGGAGCCATGGTAATGAAACTCATCTTTACTAAAAAAATAATTTATTTTCCAGTGTTGGTGCTTATGATTACTCTGTAGTCTCTAATGTTGTTTGTTGGGAGTGGCATTTTTATATGATGAAGTTTTGGAGTAACAAACTCTTTGCAAAATTATGAATTACAGAGTTTTTATTCCTCTGTGGAATGGGGGGCCTGGTATAGTTGAACGGTAATGTCATTTACTTAAATGATAGTTCTTGTGGCTCATTCTTTCTATTCTTGTTCGCAGGATATTGACAAGTTTATATTCAGGG-ACCCTTTGCATTTGGAACTACCAGACCCAGGTATAGGAAATCACATCCAAACTTGTGCTGCTTCTTATTAAAGTTGGATTCTTGAATCTTGTGAAAATTGTACATGATAAATTTTCTTGTAAAAGTAAGCATAATCCCAAACTGAGGAATAACCACATGAAAAGGACGGAGCAGCTATTATGGTATTGGGATAATGGTCATATGTCTGTCTTAACATTTTAGAAACTCCTTCTAAGGAATCTTTAAAAATTTAGAGAAAGGGAGTTAGGGGGTGGGCGGGCCATTAGAAGCACTTGCGTAGTAGTTGCAATTCTGGTTATGCAAAGATGAATTGGTGTTGATTTTCAATCAGTGCTTAGTAATGCTCACAAAGCAGACTTCAATGTTTACTGGTAGCTTTAGTTCTAACCATGCTAAGATGATACTGTGCGAATTTCCAGCCATTTGTATATAAAGGCAAGGTGATAGTTGTAGCTCCCAGAATTGTTGGTTAGTGGTTATTTGAAAAGCTGATATCATCTTGAGCTCATAATTTGATTTTGGCCTGTATTATGTATGTCTTCCATTTTCGTATCACATACCTTTTCCTCTTACCTGAACTTTGGGATAACATCTCTCGTAGCCACATAGTAGGAGTTGCAAGTTAGATCAGTAAAATTATCACCCGGAAAACAGAACTGCCCCTAAAATTATATCTCCACCATTTTTATTCTCTAATCACTGTAGTTCCAAGTATGTTCAGTATTCATAGTACTTTGACCTAATAGCTACCATTGATACATGTGAGAGATAACTCTTTTCACTTTTTCCGCAACTTTATACTTCTTAGCTTAGTATGACAAAGCAACTGTATCAGCATTCCCCTAATAGAAGAGAAGTTACATTGTAATGACATTATTTGTAGAATGCTGATGTGTCATTCATTCTTAATGCAGACAATGGCACAATCTTTCGAAGTTACTGAATTACCAGGTCTGTTAATTGAATGAAAGTGGTATTTTTGGTTGGTCAGGGGGCGCATAAGAAGCCTTCTGCTTTAACAGAGGGTTGCGGTACCTTTTAACGCCTTAATTATTCTTTGCAGTAAGATCAGCGAAA-TAATAGCACGCAAACAGTGGATTGGTGCGGGTTTCGGATAACATGTTTATTCGTGGATACAATTATAATACCATGGATAAGGTCAAAGT-TTCGGAGGCGCACACAAGATTAATATTAAGGTGTGTGGCTGTTCATCCTACTCTACCATATGTGCTGTCATCATCTGATG</genome_strand>
        <mrna_strand>GTATGATCTCCTCTACCGTTCGTCCCATTTTCTTTCTTCTTATTATTACAGAGGTTGCTCGCTGCCATTAGCAAAACCTCTACTCA-TTTTCTCTCTTTTTCGATCTCTCTCCGGCACTTTGCCACTTAGCGAGCAATTCGAA--TTGGAAGATTTCTGCAGCTGAGTAGCTGGTGGATCTTTAGGATTCTTCACACTCAAATCTCTGATTTATTGC-CTTTTTCC-AATAGAATTCGCATTCGTCGGTGAAAATG...............................................................................................................................................................................................................................CCTCTAAGATTGGAGATTAAG...............................................................................................AGGAAACTTGCTCAAAGATCAGAAAGGGTAAAGGCCGTGGATCTACATCCTACGGAGCCATG..................................................................................................................................................................................................................................................................GATATTGACAAGTTTATATTCAGGGNACCATTTGCATTTGGAACTACCAGACCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGGCACAATCTTTCGAAGTTACTGAATTACCAG................................................................................................................TAAGATCAGCGAAATTTATAGCACGCAAACAGTGGATTGTTGCTGG-TTCCGATGACATGTTTATTCGTGTATACAATTATAATACCATGGATAAGGTCAAAGTATTCGAGGGCACACAC-AGATT-ATATT-AGGTGTGTGGCTGTTCATCCTACACTACCATATGTGCTGTCATCATCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E573458" ref_strand="+" ref_description="SGN-E573458 [32771]">
      <seq>atgggtatgcactcaaatttttgagggtcattcccattatgtgatgcaggtcacatttaatccaaaagacaccaatacttttgctagtgcatctcttgatcggactataaagatttggaaccttggctctcctgaccctaactttacactggatgcccatctgaaaggggttaattgtgttgattatttcactggtggtgataaaccttttctaattactggttctgatgatcacactgctaaggtctgggactatcagacaagaagttgtgtccagactcttgaaggtcacacacacaatgtttctgctgtatgttttcatccagatcttcctattataatgacggggtctgaagatggtactgttcgtatttggcatgcaactacttacagactcgagaacacgttgaattatggccttgaaagagtttgggctattggttacatgaaaggttcaagaagggttgtaattggttacgatgagggaaccattatggtaaaacttggtcgagaggtacctgttgctagcatggataatagtggaaaagtcatatgggctaagcacaatgaggttcaaactattaacatcaagagtgtgggtgcggattatgaggttactgatggagaaagattgcctttggcagtcaaggaattgggaacttgtgacctataccaaaaagttaaagcataaccaaatggaaggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="117582" stop="121010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117882" g_stop="117993" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117994" i_stop="118090" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118091" g_stop="118222" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="244" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118223" i_stop="118303" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.344" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118304" g_stop="118452" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="393" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118453" i_stop="120022" i_length="1570">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120023" g_stop="120091" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="462" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120092" i_stop="120369" i_length="278">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120370" g_stop="120520" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="613" r_length="151" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120521" i_stop="120640" i_length="120">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="120641" g_stop="120706" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="679" r_length="66" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E573458" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117882" e_stop="117993"/>
          <exon e_start="118091" e_stop="118222"/>
          <exon e_start="118304" e_stop="118452"/>
          <exon e_start="120023" e_stop="120091"/>
          <exon e_start="120370" e_stop="120520"/>
          <exon e_start="120641" e_stop="120706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGTATGCACTCAAATTTTTGAGGGTCATTCCCATTATGTGATGCAAGTCACATTTAATCCAAAAGACACCAATACTTTTGCTAGTGCATCTCTTGATCGGACTATAAAGGTAATTTTTTTTATCTTTCCTATCGTCCCCTCCCTCCTATGATAAATTACTAAATAACATCATATTTGTCGTTCACCTGGTAATGGTTTGCTTGTAGATTTGGAACCTTGGCTCTCCTGACCCTAACTTTACACTGGATGCCCATCTGAAAGGGGTTAATTGTGTAGATTATTTTACTGGTGGTGATAAACCTTATCTAATTACTGGTTCTGATGATCACACTGCTAAGGTTTGCTACTAATAACCTATATTCTGTTGTTGATTGCACCTTTATAGAACCTGGCTTATGTGCTCTGGAATCACGAAACAGGTCTGGGACTATCAGACAAGAAGTTGTGTCCAGACTCTTGAAGGTCACACACACAATGTTTCTGCTGTATGTTTTCATCCAGATCTTCCTATTATAATGACTGGGTCTGAAGATGGTACTGTTCGTATATGGCATGCAACTACTTACAGGTAATACTTAGTATCATTTAATTATTTTAGCTTATTTCAAAATTCTATTACTATTAGATATGACTTTCATTTTTTGACGACTTCTTGTGTTCCAATACATTGTCGGATATTCAGTTTCTGTAACTTTAAAGACAGCGATTATAAAGTTATCAAGTTCAAAAAAAAAAAAAAGACACCGATTCTGCGGATGAATATGGACATATTTAGTTGTAATCTGTAAAGGGAACCACTTCTTTCTATCCTTTGGAGTTTGCATGAATCAGTGGAACCGGCTATGTAGCTTAGATGAATTCTTTGACTGAATTACAATGATGACCTATGTGAACTATATGAATTCTTTGACTGAATTACAATGATGACCTATGTGAACTATATGAATTCTTTGACTGAATTACAATGATGACCTATGTGAACTCTTTGATTGGGTCTCAACTTTTATCATGGAATGGAGCTACCATATCTCTTTTGTACCCTTTGCATCTTCTTGATGCTGGTATCGGAACAACTTACTTCATCAAAAAAAAAAAAATTCTTTGATTGAATCATAGTGATGACCTATGTATTGCTATTGGTGGATAAATTAGCGAATGTTTATTTTTATCTTTCAAGCTGTGTCATCTTTGGAGAGATACAAGTTTTGTTGAAACATATGCGCTACTCCCTCCTTATATTATGGATCAGAAAAAAAAGGGAAGACATGCACACCCTACTATCTTAGTCCAAATTGTATGTCCATTTTTCCTTTCAAATTTGTTATGGAGTTTTGTCTGTTTTTTTCCAAAAAGAAATTCTTTGCCACAGATTACGTAACACAAATGCAGAATTTGTGTGTGTGTGTGTGGGTTTTTTGGGGTGGGTGTGGGGCATTGCTTAGATGAAATGTTTCTTGCATTAGGTTGCATGAATATCGCACATACATGCTGCTGAAATTGACACATCTCTTGTTTTCAGCGTGGAATTTTCTTTTTTAGAACTTGAATAAATTGATAACAACGTTTTGATATCCTCTTTCGAATTGATGTTTACTAAAGCTGAATTATGTTTCCTGTTTATCTATATCAATGGGCTAACATGTTAACATAGTTAAAACAGTCTACCGCTATTAGCTGCAGTGCTACTTTTCTTCTTATTTTTCACTCTCAGATTAAACTTCAATTAAACCGTGAAAAATGGCGTGTTTCTAGAATTTTGCCTAACGAGAAGATGAAATTCTCCATCTACCACTTAAAGCAATGCATCTCATCTATCGCTGACTTTACCTTTTCAAAATGATTTTTATTAACTTTTTATATAACCTTCTGGTTCTGATTTCTTGTATTCTTTTCTAGGTGCTTGGGTTTTAATTGTTTATCGTTTTGTTGATTTGCATTTTCTGGTAGACTTGACAAAGTTTTGAATTATCTCTTTTGAAAACTGATGCATTTCTATAATTTTGCCTAAGATAAAATGATGAATTTTTTCTTTACTTTTGTAAGCACTCCCCAGGTTCTGACTTCTGAGTGATTGTATCCTCTCATAAATCTTGTTTCATTCCTTAATATTTTTATTTAAAAAAAATTATTTGGCGCAGACTCGAGAACACGTTGAATTATGGCCTTGAAAGAGTTTGGGCTATTGGTTACATGAAAGGTTCAAGAAGGTGAGTCTCTATAATTAATTTATAGCTGTACTTTTGATCTGCTTAGAAGTCTGATGATTTCCATATTTACTTTGATTTTCAATTATTTATTTTCTTTTTAGATTTGGACGAGGAAAGAGGGAATAGCCAATGTTAGTTGAATCATGAACTTACAAAAATAAAATATTTGAAACTAGGAAATATTAAAGAGCTAATGAGTAGATCATGATTTCATCTTTTTCTTTGTATTTGCATTTGTTCAGCTAGCTGCAGTTATAATTAATGTGTTAAATGTATAGGGTTGTAATTGGTTACGATGAGGGTACCATTATGGTAAAACTTGGTCGAGAGGTGCCTGTTGCTAGCATGGATAATAGTGGAAAAGTCATATGGGCTAAGCATAATGAGGTTCAAACTATTAACATCAAGAGTGTGGGTGTGGATTATGAGGTATGGCATCAATTTCCTTCAAGTCTGCTTGCCTAATTCAAATTACAGCTAAAATATTGTTTCGGTCACCCCCTCAATTACTGCTGGATATTGTTTTCTGAATAATTTGCTTTATATCAGGTTACTGATGGAGAAAGATTGCCTTTGGCGGTCAAGGAATTGGGAACTTGTGACCTATACCCACAA</genome_strand>
        <mrna_strand>ATGGGTATGCACTCAAATTTTTGAGGGTCATTCCCATTATGTGATGCAGGTCACATTTAATCCAAAAGACACCAATACTTTTGCTAGTGCATCTCTTGATCGGACTATAAAG.................................................................................................ATTTGGAACCTTGGCTCTCCTGACCCTAACTTTACACTGGATGCCCATCTGAAAGGGGTTAATTGTGTTGATTATTTCACTGGTGGTGATAAACCTTTTCTAATTACTGGTTCTGATGATCACACTGCTAAG.................................................................................GTCTGGGACTATCAGACAAGAAGTTGTGTCCAGACTCTTGAAGGTCACACACACAATGTTTCTGCTGTATGTTTTCATCCAGATCTTCCTATTATAATGACGGGGTCTGAAGATGGTACTGTTCGTATTTGGCATGCAACTACTTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGAGAACACGTTGAATTATGGCCTTGAAAGAGTTTGGGCTATTGGTTACATGAAAGGTTCAAGAAG......................................................................................................................................................................................................................................................................................GGTTGTAATTGGTTACGATGAGGGAACCATTATGGTAAAACTTGGTCGAGAGGTACCTGTTGCTAGCATGGATAATAGTGGAAAAGTCATATGGGCTAAGCACAATGAGGTTCAAACTATTAACATCAAGAGTGTGGGTGCGGATTATGAG........................................................................................................................GTTACTGATGGAGAAAGATTGCCTTTGGCAGTCAAGGAATTGGGAACTTGTGACCTATACCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E537619" ref_strand="+" ref_description="SGN-E537619 [TUS-56-F1]">
      <seq>ctgatggagaaagattgcctttggcggtcaaggaattgggaacttgtgacctatacccacaaagcttaaagcataaccccaatggaaggtttgttgttgtttgtggagacggtgagtatatcatatatactgctctggcctggagaaataggtcatttggctcagctctggaatttgtttggtcgtctgatggagagtatgctatccgagaaagtacttcaaggattaagattttcagcaaaaatttccaggaaaaaaagagtatccgcccgactttctctgctgagcacatctatgggggtaccttattggcaatgtgctcaaatgatttcatttgcttttacgattggattgagtgcaggttgatacgacgtattgatgttaatgtcaaaaacctctactgggctgacagtggtgatctggtggctattgctagtgatacttcattctacatactgaagtataatcgtgatgttgtctctgcacatttagatagtggaagatctgtagatgaacaaggtgttgaagatgcttttgaacttctttatgagataaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="120345" stop="122537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120645" g_stop="120706" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120707" i_stop="121214" i_length="508">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121215" g_stop="121403" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="251" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121404" i_stop="121743" i_length="340">
            <donor d_prob="0.643" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121744" g_stop="121884" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="392" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121885" i_stop="121981" i_length="97">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121982" g_stop="122056" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="467" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122057" i_stop="122146" i_length="90">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122147" g_stop="122237" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="558" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E537619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120645" e_stop="120706"/>
          <exon e_start="121215" e_stop="121403"/>
          <exon e_start="121744" e_stop="121884"/>
          <exon e_start="121982" e_stop="122056"/>
          <exon e_start="122147" e_stop="122237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGAGAAAGATTGCCTTTGGCGGTCAAGGAATTGGGAACTTGTGACCTATACCCACAAGTGAGTCAGATTTACAGCTAATACCTGGCATTTTGTATAATCTTTTACAACCTGCTTTGCAACTGTGAATTGGATCTGGTTCCATAGTTCAAATACTTCAATTGTTATTCATGTAAGGTTATCCTGTTTGGTTTGCATAAACTGTATCCTCTTTCTAGTAAAAGACTTGTTATTTTCGTTAAAAAAGCAACGCATAGATTTGAAACCAATCCTCCCTTAATCTGATTTCTGGTTTTCGTTTTGTACAGTTTCTCTCTTCAGACTTCCATTGTGGGAAGCCATTTTGTTGTAGTTATGCTTATCCCAGAAGATATGACTTATGTACCTGTTTCTTTGCTTTCTTTATGTCCTTAAAAATGTGTCGTTTTATTGGTTCTTTAGTCATCTCCTCATGGTTTGAGGTTGTGCTTGCCATTTGGAATATACTAGTTTCCCTCTTAGGGTTAAAGGATGTAATTACTTAGATGTCACTTACTGTTGATCTCATTCTTTTTCTCCTCCTTCACAGAGCTTAAAGCATAACCCCAATGGAAGGTTTGTTGTTGTTTGTGGAGACGGTGAGTATATCATATATACTGCTCTGGCCTGGAGAAATAGGTCATTTGGCTCAGCTCTGGAATTTGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAGGTTTCATGAATGTCCTCACAACTGACTCCCTCCCAAATTTGGATTACTTTTGTGTTATGCATCAGATTATGTGTTATTTAATCTAATGATATTACTTTAAATAGTGGACCCACAATTAGATGTTATCCCCTCTTACCCAGTCTCCTTTTCTCTCTCCTATTTCGTACCCTTTAATTTGTTACTTCTTAGAGGCCTGACAAGTAAATTTGGGGTCATGTGCATGCAGTAAGTTGTAGTTCTTTAATGCATTTAGCTTCTTTTTGTCTTGAAGCTGAAGGGTGTATTGTTTAGTAGTTTCTTTTGTTCACCTGGATTGAAGTGATTACACTGATGTCTCCAGGAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAAGTAAGATATATAAGCTTGACTTCCATAAGTGCTATGTTGGTCCTTTACTTTTTGATGGTTGTCACAATATCATTTTTTTTTTATTCAACTACTTCAGAACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAATGTGAGAGCTCTCTTTCCCAGATTTTTAAATTACTACTATATCTTTACTTTGCAAGCTATTGTTATAATTGTCTTTTGGTTAAACCTGCAGCGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATG</genome_strand>
        <mrna_strand>CTGATGGAGAAAGATTGCCTTTGGCGGTCAAGGAATTGGGAACTTGTGACCTATACCCACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTAAAGCATAACCCCAATGGAAGGTTTGTTGTTGTTTGTGGAGACGGTGAGTATATCATATATACTGCTCTGGCCTGGAGAAATAGGTCATTTGGCTCAGCTCTGGAATTTGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAG....................................................................................................................................................................................................................................................................................................................................................GAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAA.................................................................................................AACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAAT..........................................................................................CGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E266706" ref_strand="+" ref_description="SGN-E266706 [cLEI-5-H6]">
      <seq>tgatggagaaagattgcctttggcggtcaaggaattgggaacttgtgacctatacccacaaagcttaaagcataaccccaatggaaggtttgttgttgtttgtggagacggtgagtatatcatatatactgctctggcctggagaaataggtcatttggctcagctctggaatttgtttggtcgtctgatggagagtatgctatccgagaaagtacttcaaggattaagattttcagcaaaaatttccaggaaaaaaagagtatccgcccgactttctctgctgagcacatctatgggggtaccttattggcaatgtgctcaaatgatttcatttgcttttacgattggattgagtgcaggttgatacgacgtattgatgttaatgtcaaaaacctctactgggctgacagtggtgatctggtggctattgctagtgatacttcattctacatactgaagtataatcgtgatgttgtctctgcacatttagatagtggaagatctgtagatgaacaaggtgttgaagatgcttttgaacttctttatgagataaatgaacgtgtcagaactggaatttgggtaggagattgtttcatttacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="120346" stop="122585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120646" g_stop="120706" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120707" i_stop="121214" i_length="508">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121215" g_stop="121403" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="250" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121404" i_stop="121743" i_length="340">
            <donor d_prob="0.643" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121744" g_stop="121884" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="391" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121885" i_stop="121981" i_length="97">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121982" g_stop="122056" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="466" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122057" i_stop="122146" i_length="90">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122147" g_stop="122285" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="605" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E266706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120646" e_stop="120706"/>
          <exon e_start="121215" e_stop="121403"/>
          <exon e_start="121744" e_stop="121884"/>
          <exon e_start="121982" e_stop="122056"/>
          <exon e_start="122147" e_stop="122285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGAGAAAGATTGCCTTTGGCGGTCAAGGAATTGGGAACTTGTGACCTATACCCACAAGTGAGTCAGATTTACAGCTAATACCTGGCATTTTGTATAATCTTTTACAACCTGCTTTGCAACTGTGAATTGGATCTGGTTCCATAGTTCAAATACTTCAATTGTTATTCATGTAAGGTTATCCTGTTTGGTTTGCATAAACTGTATCCTCTTTCTAGTAAAAGACTTGTTATTTTCGTTAAAAAAGCAACGCATAGATTTGAAACCAATCCTCCCTTAATCTGATTTCTGGTTTTCGTTTTGTACAGTTTCTCTCTTCAGACTTCCATTGTGGGAAGCCATTTTGTTGTAGTTATGCTTATCCCAGAAGATATGACTTATGTACCTGTTTCTTTGCTTTCTTTATGTCCTTAAAAATGTGTCGTTTTATTGGTTCTTTAGTCATCTCCTCATGGTTTGAGGTTGTGCTTGCCATTTGGAATATACTAGTTTCCCTCTTAGGGTTAAAGGATGTAATTACTTAGATGTCACTTACTGTTGATCTCATTCTTTTTCTCCTCCTTCACAGAGCTTAAAGCATAACCCCAATGGAAGGTTTGTTGTTGTTTGTGGAGACGGTGAGTATATCATATATACTGCTCTGGCCTGGAGAAATAGGTCATTTGGCTCAGCTCTGGAATTTGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAGGTTTCATGAATGTCCTCACAACTGACTCCCTCCCAAATTTGGATTACTTTTGTGTTATGCATCAGATTATGTGTTATTTAATCTAATGATATTACTTTAAATAGTGGACCCACAATTAGATGTTATCCCCTCTTACCCAGTCTCCTTTTCTCTCTCCTATTTCGTACCCTTTAATTTGTTACTTCTTAGAGGCCTGACAAGTAAATTTGGGGTCATGTGCATGCAGTAAGTTGTAGTTCTTTAATGCATTTAGCTTCTTTTTGTCTTGAAGCTGAAGGGTGTATTGTTTAGTAGTTTCTTTTGTTCACCTGGATTGAAGTGATTACACTGATGTCTCCAGGAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAAGTAAGATATATAAGCTTGACTTCCATAAGTGCTATGTTGGTCCTTTACTTTTTGATGGTTGTCACAATATCATTTTTTTTTTATTCAACTACTTCAGAACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAATGTGAGAGCTCTCTTTCCCAGATTTTTAAATTACTACTATATCTTTACTTTGCAAGCTATTGTTATAATTGTCTTTTGGTTAAACCTGCAGCGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATGAACGTGTCAGAACTGGAATTTGGGTAGGAGATTGTTTCATTTACAACA</genome_strand>
        <mrna_strand>TGATGGAGAAAGATTGCCTTTGGCGGTCAAGGAATTGGGAACTTGTGACCTATACCCACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTAAAGCATAACCCCAATGGAAGGTTTGTTGTTGTTTGTGGAGACGGTGAGTATATCATATATACTGCTCTGGCCTGGAGAAATAGGTCATTTGGCTCAGCTCTGGAATTTGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAG....................................................................................................................................................................................................................................................................................................................................................GAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAA.................................................................................................AACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAAT..........................................................................................CGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATGAACGTGTCAGAACTGGAATTTGGGTAGGAGATTGTTTCATTTACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E250426" ref_strand="+" ref_description="SGN-E250426 [cLEG-6-B12]">
      <seq>tttgtggagacggtgagtatatcatatatactgctctggcctggagaaataggtgagtttggctcagctctggaatttgtttggtcgtctgatggagagtatgctatccgagaaagtacttcaaggattaagattttcagcaaaaatttccaggaaaaaaagagtatccgcccgactttctctgctgagcacatctatgggggtaccttattggcaatgtgctcaaatgatttcatttgcttttacgattggattgagtgcaggttgatacgacgtattgatgttaatgtcaaaaacctctactgggctgacagtggtgatctggtggctattgctagtgatacttcattctacatactgaagtataatcgtgatgttgtctctgcacatttagatagtggaagatctgtagatgaacaaggtgttgaagatgcttttgaacttctttatgagataaatgaacgtgtcagaactggaatttgggtaggagattgtttcatttacaacaattcttcttcgagactgaattactgtgtaggcggcgaggtgaccacaatgtttcacttagaccgacccatgtacctgctgggatatctcgctaatcaaagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="120952" stop="122781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121252" g_stop="121403" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121404" i_stop="121743" i_length="340">
            <donor d_prob="0.643" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121744" g_stop="121884" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="294" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121885" i_stop="121981" i_length="97">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121982" g_stop="122056" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="369" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122057" i_stop="122146" i_length="90">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122147" g_stop="122323" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="546" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122324" i_stop="122416" i_length="93">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122417" g_stop="122481" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="611" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E250426" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121252" e_stop="121403"/>
          <exon e_start="121744" e_stop="121884"/>
          <exon e_start="121982" e_stop="122056"/>
          <exon e_start="122147" e_stop="122323"/>
          <exon e_start="122417" e_stop="122481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGGAGACGGTGAGTATATCATATATACTGCTCTGGCCTGGAGAAATAGGTCA-TTTGGCTCAGCTCTGGAATTTGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAGGTTTCATGAATGTCCTCACAACTGACTCCCTCCCAAATTTGGATTACTTTTGTGTTATGCATCAGATTATGTGTTATTTAATCTAATGATATTACTTTAAATAGTGGACCCACAATTAGATGTTATCCCCTCTTACCCAGTCTCCTTTTCTCTCTCCTATTTCGTACCCTTTAATTTGTTACTTCTTAGAGGCCTGACAAGTAAATTTGGGGTCATGTGCATGCAGTAAGTTGTAGTTCTTTAATGCATTTAGCTTCTTTTTGTCTTGAAGCTGAAGGGTGTATTGTTTAGTAGTTTCTTTTGTTCACCTGGATTGAAGTGATTACACTGATGTCTCCAGGAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAAGTAAGATATATAAGCTTGACTTCCATAAGTGCTATGTTGGTCCTTTACTTTTTGATGGTTGTCACAATATCATTTTTTTTTTATTCAACTACTTCAGAACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAATGTGAGAGCTCTCTTTCCCAGATTTTTAAATTACTACTATATCTTTACTTTGCAAGCTATTGTTATAATTGTCTTTTGGTTAAACCTGCAGCGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATGAACGTGTCAGAACTGGAATTTGGGTAGGAGATTGTTTCATTTACAACAATTCTTCTTCGAGACTGAATTACTGTGTAGGCGGCGAGGTATGAAAAGTCATTCATACAGTTTTATGGACCTCTTTGTTTTCAGAATTTCTCATCTCATAGGTGATTAACAGTGTTTCTTATGATCTTTAGGTGACCACAATGTTTCACTTAGACCGACCCATGTACCTGCTGGGATATCTCGCTAATCAAAGTAG</genome_strand>
        <mrna_strand>TTTGTGGAGACGGTGAGTATATCATATATACTGCTCTGGCCTGGAGAAATAGGTGAGTTTGGCTCAGCTCTGGAATTTGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAG....................................................................................................................................................................................................................................................................................................................................................GAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAA.................................................................................................AACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAAT..........................................................................................CGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATGAACGTGTCAGAACTGGAATTTGGGTAGGAGATTGTTTCATTTACAACAATTCTTCTTCGAGACTGAATTACTGTGTAGGCGGCGAG.............................................................................................GTGACCACAATGTTTCACTTAGACCGACCCATGTACCTGCTGGGATATCTCGCTAATCAAAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E701703" ref_strand="+" ref_description="SGN-E701703 [FA16CH02]">
      <seq>gcctcgttcgtctgatggagagtatgctatccgagaaagtacttcaaggattaagattttcagcaaaaatttccaggaaaaaaagagtatccgcccgactttctctgctgagcacatctatgggggtaccttattggcaatgtgctcaaatgatttcatttgcttttacgattggattgagtgcaggttgatacgacgtattgatgttaatgtcaaaaacctctactgggctgacagtggtgatctggtggctattgctagtgatacttcattctacatactgaagtataatcgtgatgttgtctctgcacatttagatagtggaagatctgtagatgaacaaggtgttgaagatgcttttgaacttctttatgagataaatgaacgtgtcagaactggaatttgggtaggagattgtttcatttacaacaattcttcttcgagactgaattactgtgtaggcggcgaggtgaccacaatgtttcacttagaccgacccatgtacctgctgggatatctcgctaatcaaagtagagttttcctgattgacaaagagttcaatgtcgtgggatatactcttctgctcagcttgatagagtacaagacacttgtgatgcgtggtgactgggacagagctaatgcagtcttaccatcaattcctaaggatcaccataacagtgttgctcgtttcttggaatcacggggtatgattgaggaagcattggaagttgcaacagacgctgactacagatttgaacttgccatacagttgggtaaattagaaattgcaaaggaaatcgctgtagtagcacagagtgaatccaaatggaagcagttgggtgaactggcaatgtctgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="121031" stop="123912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121328" g_stop="121403" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121404" i_stop="121743" i_length="340">
            <donor d_prob="0.643" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121744" g_stop="121884" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="217" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121885" i_stop="121981" i_length="97">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121982" g_stop="122056" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="292" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122057" i_stop="122146" i_length="90">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122147" g_stop="122323" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="469" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122324" i_stop="122416" i_length="93">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122417" g_stop="122508" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="561" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122509" i_stop="122601" i_length="93">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122602" g_stop="122718" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="678" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122719" i_stop="123308" i_length="590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123309" g_stop="123423" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="793" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123424" i_stop="123543" i_length="120">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="123544" g_stop="123612" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="862" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E701703" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121328" e_stop="121403"/>
          <exon e_start="121744" e_stop="121884"/>
          <exon e_start="121982" e_stop="122056"/>
          <exon e_start="122147" e_stop="122323"/>
          <exon e_start="122417" e_stop="122508"/>
          <exon e_start="122602" e_stop="122718"/>
          <exon e_start="123309" e_stop="123423"/>
          <exon e_start="123544" e_stop="123612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAGGTTTCATGAATGTCCTCACAACTGACTCCCTCCCAAATTTGGATTACTTTTGTGTTATGCATCAGATTATGTGTTATTTAATCTAATGATATTACTTTAAATAGTGGACCCACAATTAGATGTTATCCCCTCTTACCCAGTCTCCTTTTCTCTCTCCTATTTCGTACCCTTTAATTTGTTACTTCTTAGAGGCCTGACAAGTAAATTTGGGGTCATGTGCATGCAGTAAGTTGTAGTTCTTTAATGCATTTAGCTTCTTTTTGTCTTGAAGCTGAAGGGTGTATTGTTTAGTAGTTTCTTTTGTTCACCTGGATTGAAGTGATTACACTGATGTCTCCAGGAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAAGTAAGATATATAAGCTTGACTTCCATAAGTGCTATGTTGGTCCTTTACTTTTTGATGGTTGTCACAATATCATTTTTTTTTTATTCAACTACTTCAGAACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAATGTGAGAGCTCTCTTTCCCAGATTTTTAAATTACTACTATATCTTTACTTTGCAAGCTATTGTTATAATTGTCTTTTGGTTAAACCTGCAGCGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATGAACGTGTCAGAACTGGAATTTGGGTAGGAGATTGTTTCATTTACAACAATTCTTCTTCGAGACTGAATTACTGTGTAGGCGGCGAGGTATGAAAAGTCATTCATACAGTTTTATGGACCTCTTTGTTTTCAGAATTTCTCATCTCATAGGTGATTAACAGTGTTTCTTATGATCTTTAGGTGACCACAATGTTTCACTTAGACCGACCCATGTACCTGCTGGGATATCTCGCTAATCAAAGTAGAGTTTTCCTGATTGACAAAGAGTTCAAGTAAGTAGGCTCATGACAGCTTCTCACACAGGAACTAGAAAAATTGTTTCAAGTATGACTCTTCTACGATGACCCATATTCTTTTCATTACAGTGTCGTGGGATATACTCTTCTGCTCAGCTTGATAGAGTACAAGACACTTGTGATGCGTGGTGACTGGGACAGAGCTAATGCAGTCTTACCATCAATTCCTAAGGATCACCATAACAGGTACATCTCTATTCTTCTTGTAATATGTTTTTTTCTGTGAATATGATTAACGAATTGTGCTTGATTGCGATTTTCCTTCATCTTCGAACGCAGTTGCAAAATGTGACAAACTGGCAGTTGAAAAAATGCAAACTATCATTTTATTGTAGTCTATGATGTAGATTGTTTTCTTAAGACACATTATTGAGTATTGGAGTGAAATGTGTCCAAATGGTATGAAATGGATTTTGAGGTTTCATATAGCCCATCCCATCTAGTTTGTGAACACAGTTGTATTGATGTAATATTGTTTATTATCCTGGGTTGTGGCACACACTACTAAAGTTACTCTGATAGCCGTTGTAATTTTAGTGCTAATACGTGCTACAAGCCCTGACTTTCGGAAGGGATGCGTATATTAGATAAGAGGATATTCTTACTGCTATGCTATGTGATTGGATGCAGTCACTCATGTTCTTATTTTTCCTATGATCTATTGGGATCTGCATTAATATATTGTATTTAGTAGTTGAGCCTTGGGGGGGGGGGGTTCTGTCTTATATGATGGGATTATCAAGTTCTCTAAGTTCTGATGAAATGATTCCCTGTAGTGTTGCTCGTTTCTTGGAATCACGGGGTATGATTGAGGAAGCATTGGAAGTTGCAACAGACGCTGACTACAGATTTGAACTTGCCATACAGTTGGGTAAATTAGAAATTGCAAAGGTAAGGGCTACTAACTCGTGGAAGTGTGTGGTTTGACTTCAGCCTCTCTTCCTTATACTTGTCTCTGTCAGAAGAACCATATGTCGTTAAGTATGGCCATGTGCCCCTTCTTGTTTGCAGGAAATCGCTGTAGTAGCACAGAGTGAATCCAAATGGAAGCAGTTGGGTGAACTGGCAATGTCTGCTGGA</genome_strand>
        <mrna_strand>GCCTCGTTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAG....................................................................................................................................................................................................................................................................................................................................................GAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAA.................................................................................................AACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAAT..........................................................................................CGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATGAACGTGTCAGAACTGGAATTTGGGTAGGAGATTGTTTCATTTACAACAATTCTTCTTCGAGACTGAATTACTGTGTAGGCGGCGAG.............................................................................................GTGACCACAATGTTTCACTTAGACCGACCCATGTACCTGCTGGGATATCTCGCTAATCAAAGTAGAGTTTTCCTGATTGACAAAGAGTTCAA.............................................................................................TGTCGTGGGATATACTCTTCTGCTCAGCTTGATAGAGTACAAGACACTTGTGATGCGTGGTGACTGGGACAGAGCTAATGCAGTCTTACCATCAATTCCTAAGGATCACCATAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCTCGTTTCTTGGAATCACGGGGTATGATTGAGGAAGCATTGGAAGTTGCAACAGACGCTGACTACAGATTTGAACTTGCCATACAGTTGGGTAAATTAGAAATTGCAAAG........................................................................................................................GAAATCGCTGTAGTAGCACAGAGTGAATCCAAATGGAAGCAGTTGGGTGAACTGGCAATGTCTGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E451732" ref_strand="+" ref_description="SGN-E451732 [cSTS-14-E23]">
      <seq>accacaatgtttcacctttagaccgaccccatgtacctgctgggatatctcgctaatcaaagtagagttttcctgattgacaaagagttcaatgtcgtgggatatactcttctgctcagcttgatagagtacaagacacttgtgatgcgtggtgactgggacagaagctaatgcggtcttaccatcaattcctaaggatcaccataacagtgttgctcgtttcttggaatcacgaggtatgattgaggaagcattggaagttgcaacagacgctgactacagatttgaacttgccatacagttgggtaaattagacattgcaaaggaaattgctgtagtagcaaagagtgaatccaaatggaagcagttgggtgaactggcaatgtctgctggaatgctggagatggcagaggattgtttgaaatacgctaatgacttgagtggtttgctgctgctttattcctcattaggagatgctgaaggaattgctgaattagcatctcttgcaaaagagcatggaagaaacaatgttgcattcctttgcctgttcctcctgggtaaagtggaagattgtgttcagctgttggttgacagcaaccggatacctgaggctgcatttatggncaagatcttaccttccaagtaaggtttctgaaatagttgcaatgtggaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="122120" stop="124783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122420" g_stop="122508" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122509" i_stop="122601" i_length="93">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122602" g_stop="122718" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="210" r_length="118" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122719" i_stop="123308" i_length="590">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.724" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123309" g_stop="123423" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="325" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123424" i_stop="123543" i_length="120">
            <donor d_prob="0.860" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123544" g_stop="123615" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="397" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123616" i_stop="124112" i_length="497">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124113" g_stop="124309" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="594" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124310" i_stop="124402" i_length="93">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124403" g_stop="124483" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="676" r_length="82" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E451732" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122420" e_stop="122508"/>
          <exon e_start="122602" e_stop="122718"/>
          <exon e_start="123309" e_stop="123423"/>
          <exon e_start="123544" e_stop="123615"/>
          <exon e_start="124113" e_stop="124309"/>
          <exon e_start="124403" e_stop="124483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACAATGTTTCA-CT-TAGACCGA-CCCATGTACCTGCTGGGATATCTCGCTAATCAAAGTAGAGTTTTCCTGATTGACAAAGAGTTCAAGTAAGTAGGCTCATGACAGCTTCTCACACAGGAACTAGAAAAATTGTTTCAAGTATGACTCTTCTACGATGACCCATATTCTTTTCATTACAGTGTCGTGGGATATACTCTTCTGCTCAGCTTGATAGAGTACAAGACACTTGTGATGCGTGGTGACTGGGACAG-AGCTAATGCAGTCTTACCATCAATTCCTAAGGATCACCATAACAGGTACATCTCTATTCTTCTTGTAATATGTTTTTTTCTGTGAATATGATTAACGAATTGTGCTTGATTGCGATTTTCCTTCATCTTCGAACGCAGTTGCAAAATGTGACAAACTGGCAGTTGAAAAAATGCAAACTATCATTTTATTGTAGTCTATGATGTAGATTGTTTTCTTAAGACACATTATTGAGTATTGGAGTGAAATGTGTCCAAATGGTATGAAATGGATTTTGAGGTTTCATATAGCCCATCCCATCTAGTTTGTGAACACAGTTGTATTGATGTAATATTGTTTATTATCCTGGGTTGTGGCACACACTACTAAAGTTACTCTGATAGCCGTTGTAATTTTAGTGCTAATACGTGCTACAAGCCCTGACTTTCGGAAGGGATGCGTATATTAGATAAGAGGATATTCTTACTGCTATGCTATGTGATTGGATGCAGTCACTCATGTTCTTATTTTTCCTATGATCTATTGGGATCTGCATTAATATATTGTATTTAGTAGTTGAGCCTTGGGGGGGGGGGGTTCTGTCTTATATGATGGGATTATCAAGTTCTCTAAGTTCTGATGAAATGATTCCCTGTAGTGTTGCTCGTTTCTTGGAATCACGGGGTATGATTGAGGAAGCATTGGAAGTTGCAACAGACGCTGACTACAGATTTGAACTTGCCATACAGTTGGGTAAATTAGAAATTGCAAAGGTAAGGGCTACTAACTCGTGGAAGTGTGTGGTTTGACTTCAGCCTCTCTTCCTTATACTTGTCTCTGTCAGAAGAACCATATGTCGTTAAGTATGGCCATGTGCCCCTTCTTGTTTGCAGGAAATCGCTGTAGTAGCACAGAGTGAATCCAAATGGAAGCAGTTGGGTGAACTGGCAATGTCTGCTGGAATGGTAATTGATACTTACAGCCGCTTGAGCCCCTTTTTTTTTGAAAACAAATTCTTACAAGGGGGAACATAAACCACTTGAATTTTCGAAAAAAAAAGTAAATTGATGAGTTTTACAAATGGTCAGTGTTTGAGCTCCTTAATTTATATCAGAAATTCCAAGTCAGCTGTCCGAAAGTTTCTTAGCAGAAAACTCCTGACCCATACCATTTTTGCTGCTGGAAAAATTTATGGTTAAGGTTCTGAACGCTGTTGGTTGTCCTTTTGCCTGTGAAAGTTTACCGAATGTTTCTGTTTGTAGTTCAGTGTAAAGGTTGTTTGTAGTTGATTTCTGCAGCCTCCTGGTCATCCTTTTTAGTACTCTTCACTTGGATTATAACAACAAGCCCAGTGTGATCCCACAAATGGGGTCTGGGGATGGTGGGGTGTACACAAACCTTATCCCTACCAACTGTTCTTTACTTGAATTCTCTATCAATATTGCTGTTCTGTATTTTGCAGCTGGAGATGGCAGAGGATTGTTTGAAATACGCTAATGACTTGAGTGGTTTGCTGATGCTTTATTCCTCGTTAGGAGATGCTGAAGGAATGGCTGAATTAGCATCTCTTGCAAAAGAGCATGGAAGAAACAATGTTGCATTCCTTTGCCTGTTCCTCCTGGGTAAAGTGGAAGATTGTGTTCAGCTGTTGGTTGACAGGTACTTTTTCATTTGTGTTCCTCTTCAGTTTGTTGCCACTTGTCAGATTGTTTCAACTCTGGAATGATATTCTCTATTGCAATTACTTTGCAGCAACCGGATACCTGAGGCTGCATTTATGG-CAAGATCTTACCTTCCAAGTAAGGTTTCTGAAATAGTTGCAATGTGGAGGAA</genome_strand>
        <mrna_strand>ACCACAATGTTTCACCTTTAGACCGACCCCATGTACCTGCTGGGATATCTCGCTAATCAAAGTAGAGTTTTCCTGATTGACAAAGAGTTCAA.............................................................................................TGTCGTGGGATATACTCTTCTGCTCAGCTTGATAGAGTACAAGACACTTGTGATGCGTGGTGACTGGGACAGAAGCTAATGCGGTCTTACCATCAATTCCTAAGGATCACCATAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCTCGTTTCTTGGAATCACGAGGTATGATTGAGGAAGCATTGGAAGTTGCAACAGACGCTGACTACAGATTTGAACTTGCCATACAGTTGGGTAAATTAGACATTGCAAAG........................................................................................................................GAAATTGCTGTAGTAGCAAAGAGTGAATCCAAATGGAAGCAGTTGGGTGAACTGGCAATGTCTGCTGGAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGATGGCAGAGGATTGTTTGAAATACGCTAATGACTTGAGTGGTTTGCTGCTGCTTTATTCCTCATTAGGAGATGCTGAAGGAATTGCTGAATTAGCATCTCTTGCAAAAGAGCATGGAAGAAACAATGTTGCATTCCTTTGCCTGTTCCTCCTGGGTAAAGTGGAAGATTGTGTTCAGCTGTTGGTTGACAG.............................................................................................CAACCGGATACCTGAGGCTGCATTTATGGNCAAGATCTTACCTTCCAAGTAAGGTTTCTGAAATAGTTGCAATGTGGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E307621" ref_strand="+" ref_description="SGN-E307621 [cLEY-16-B5]">
      <seq>taaattagaaattgcaaaggaaatcgctgtagtagcacagagtgaatccaaatggaagcagttgggtgaactggcaatgtctgctggaatgctggagatggcagaggattgtttgaaatacgctaatgacttgagtggtttgctgatgctttattcctcgttaggagatgctgaaggaatggctgaattagcatctcttgcaaaagagcatggaagaaacaatgttgcattcctttgcctgttcctcctgggtaaagtggaagattgtgttcagctgttggttgacagcaaccggatacctgaggctgcatttatggcaagatcttaccttccaagtaaggtttctgaaatagttgcaatgtggaggaaggatcttaataaggttaaccagaaagcagcagaagctttggctgatcctgaagaatatcccaacatgtttgagcactggcaaattgcacatgcagttgaagctagagtcgcagaggaaaggggtgtatacccaccagcagcagattatggaaattatgctgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="123105" stop="125760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123405" g_stop="123423" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123424" i_stop="123543" i_length="120">
            <donor d_prob="0.860" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123544" g_stop="123615" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="91" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123616" i_stop="124112" i_length="497">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124113" g_stop="124309" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="288" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124310" i_stop="124402" i_length="93">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124403" g_stop="124496" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="382" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124497" i_stop="125056" i_length="560">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125057" g_stop="125163" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="489" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125164" i_stop="125415" i_length="252">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125416" g_stop="125460" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="534" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E307621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123405" e_stop="123423"/>
          <exon e_start="123544" e_stop="123615"/>
          <exon e_start="124113" e_stop="124309"/>
          <exon e_start="124403" e_stop="124496"/>
          <exon e_start="125057" e_stop="125163"/>
          <exon e_start="125416" e_stop="125460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTAGAAATTGCAAAGGTAAGGGCTACTAACTCGTGGAAGTGTGTGGTTTGACTTCAGCCTCTCTTCCTTATACTTGTCTCTGTCAGAAGAACCATATGTCGTTAAGTATGGCCATGTGCCCCTTCTTGTTTGCAGGAAATCGCTGTAGTAGCACAGAGTGAATCCAAATGGAAGCAGTTGGGTGAACTGGCAATGTCTGCTGGAATGGTAATTGATACTTACAGCCGCTTGAGCCCCTTTTTTTTTGAAAACAAATTCTTACAAGGGGGAACATAAACCACTTGAATTTTCGAAAAAAAAAGTAAATTGATGAGTTTTACAAATGGTCAGTGTTTGAGCTCCTTAATTTATATCAGAAATTCCAAGTCAGCTGTCCGAAAGTTTCTTAGCAGAAAACTCCTGACCCATACCATTTTTGCTGCTGGAAAAATTTATGGTTAAGGTTCTGAACGCTGTTGGTTGTCCTTTTGCCTGTGAAAGTTTACCGAATGTTTCTGTTTGTAGTTCAGTGTAAAGGTTGTTTGTAGTTGATTTCTGCAGCCTCCTGGTCATCCTTTTTAGTACTCTTCACTTGGATTATAACAACAAGCCCAGTGTGATCCCACAAATGGGGTCTGGGGATGGTGGGGTGTACACAAACCTTATCCCTACCAACTGTTCTTTACTTGAATTCTCTATCAATATTGCTGTTCTGTATTTTGCAGCTGGAGATGGCAGAGGATTGTTTGAAATACGCTAATGACTTGAGTGGTTTGCTGATGCTTTATTCCTCGTTAGGAGATGCTGAAGGAATGGCTGAATTAGCATCTCTTGCAAAAGAGCATGGAAGAAACAATGTTGCATTCCTTTGCCTGTTCCTCCTGGGTAAAGTGGAAGATTGTGTTCAGCTGTTGGTTGACAGGTACTTTTTCATTTGTGTTCCTCTTCAGTTTGTTGCCACTTGTCAGATTGTTTCAACTCTGGAATGATATTCTCTATTGCAATTACTTTGCAGCAACCGGATACCTGAGGCTGCATTTATGGCAAGATCTTACCTTCCAAGTAAGGTTTCTGAAATAGTTGCAATGTGGAGGAAGGATCTTAATAAGGTTAGTGATATTCATTTTTGTGATTGCTATTAGATTTTCATGGTCCACTATTTAAAGAGCTGTTTCTCTTGGTCAGTTTTTTAAAAAAGTATGCTACTTTCGTTTTAATCTTTTTTAAAATAAATAAAGAAATAAAGTACAATGCTTCAGCCTCATGCTGTGGGGATCATGCTTTTTGACCTTTAAGTTAACAGTGCAAAGGACTTAGAGCTCTTTGATGGTACTGTTATGCCTGTGATAAGACATAAAAATTTGCTGTTGTTGACGTGTGTGTTCTCTTTTCTAACTTTTGCTTGCATTTGCATGTGCCTGAAAATAGCCTTGAAATATTTCTGTCGATTTCTCTCAGCGGCCAATGTGGCCCGAGAACACTCTATATGCGATAGACATCCATTTAACTTCACGATTAGAATTTGAGTGTCTTTGTAAAAGAATGATTTGAACTTGAGCGCAAGTAGTAAGAGAACTGCAGAAAAGGTTGTCTTTTATGGGTAAGAAACAGTCTGCAGAATTATCTGTCAGATTTTGAACCTAGTTTTCTGCATGATTTCTGCCTGTAGGTTAACCAGAAAGCAGCAGAAGCTTTGGCTGATCCTGAAGAATATCCCAACATGTTTGAGCACTGGCAAATTGCACATGCAGTTGAAGCTAGAGTCGCAGAGGAAAGGTGTATATAGACCACTATTCCCCTTTCTGTGCATCTTTTGTAGCTTGTACACTGGTGGCTCTTTGAAAAAAATTTACATCTCTTTTTCTATTTGTACTCCTTTCCTCTTATTGCTGGAGTATGAGTTCAACAGGGTTTAATGGATGGGCATATTTAACACCATTGTGGACTGGTAGCCAGTTATGAGACCAAGTGTTGCACAATTTCATTGTGAAAATTTTTCATCAAGGTTATTTTCTAATTTTTATGTAGGGGTGTATACCCACCAGCAGCAGATTATGGAAATTATGCTGATAG</genome_strand>
        <mrna_strand>TAAATTAGAAATTGCAAAG........................................................................................................................GAAATCGCTGTAGTAGCACAGAGTGAATCCAAATGGAAGCAGTTGGGTGAACTGGCAATGTCTGCTGGAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGATGGCAGAGGATTGTTTGAAATACGCTAATGACTTGAGTGGTTTGCTGATGCTTTATTCCTCGTTAGGAGATGCTGAAGGAATGGCTGAATTAGCATCTCTTGCAAAAGAGCATGGAAGAAACAATGTTGCATTCCTTTGCCTGTTCCTCCTGGGTAAAGTGGAAGATTGTGTTCAGCTGTTGGTTGACAG.............................................................................................CAACCGGATACCTGAGGCTGCATTTATGGCAAGATCTTACCTTCCAAGTAAGGTTTCTGAAATAGTTGCAATGTGGAGGAAGGATCTTAATAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCAGAAAGCAGCAGAAGCTTTGGCTGATCCTGAAGAATATCCCAACATGTTTGAGCACTGGCAAATTGCACATGCAGTTGAAGCTAGAGTCGCAGAGGAAAG............................................................................................................................................................................................................................................................GGGTGTATACCCACCAGCAGCAGATTATGGAAATTATGCTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E446880" ref_strand="+" ref_description="SGN-E446880 [cSTA-23-I12]">
      <seq>gagagaactagtctcgagttttttttttttttttttttttttttttttttttaacttcatgagaataggtgatgaggtgcaagaacagggacaagatggcactcaacaggagagccaaaaagaggctgttgttgtaaatgctgactctactgatagtgcagtactcgtcaatggaaacgaggctgaagaagagtggggtacgaatactgaaggaaaaccgtcagcctaaaagcaattggttgggccggtgtgaaaatcctaattttgtagctgtgcttacaccacataactaggttcagtgaagacagttggttccagctgtatgtaatccgttcttatggtgagaattgagttttctgcatcaagcataattttatgcatcctttgtctgataaacaggtcttatctgtatgtcttcttgattgggggtgcttcaaattttatcttatttaccaagtcttttgtgtgttaactacacttgcacgcatatcatttcatttgcttgactggtgcccttgtagaatatttgaacttgtacatttaaccttgttctgccttgggctatatgcaagaaactgaagaagccatgtttttccccctagaatttggttaattttttgattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="52399" stop="127490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125662" g_stop="125714" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.566"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125715" i_stop="125883" i_length="169">
            <donor d_prob="0.000" d_score="0.58"/>
            <acceptor a_prob="0.992" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125884" g_stop="126101" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="273" r_length="222" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126102" i_stop="126835" i_length="734">
            <donor d_prob="0.621" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126836" g_stop="127190" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="626" r_length="353" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E446880" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125662" e_stop="125714"/>
          <exon e_start="125884" e_stop="126101"/>
          <exon e_start="126836" e_stop="127190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGTAGAAAACATAGTGTTAGCATTTTATATTATTTTGTTTATACAATGCTGGGGATTAGGTATGGATGTATGGCATAATAGTTTGAATTTCAAGCATCTTACAACAACCTTATGCTCGATGGTAGTTGATACCCTTCATACAAGCAACTTATACTACTAATCACTGTGGTAAAGGCCATGTTTAAAAGTGATTGTTTTCTTGTTTAAACTCCCCAGGTTGTGGAACAGAAT-GGTGATGAGGTGCAAGAGCAGGGACAAGATGGCACTCAACAGGAGAGCCAAGAAGAGGC---TGTTGTAGATGCTGAATCTACTGATAGTGCAGTACTCGTCAATGGAAATGAGGCTGAAGAAGAGTGGGGTACGAATACTGAAGGAAAACCGTCAGCCTAAAAGCAATTGGTTGGGCCGGTGTGAAAATCCTAATTTTGTAGCTGGTGATTAATTGAATTTCTTTTAGTTGCTGTGTTTGGCTCCCTATACATTCCAAATCCTTCTCTTTTTTCTTTTATGCCTCCTTTTTTTTCTTTAACCTTAACTGCTTGAAGCAATTGCAATTTAGGCAAACCCAACCTTGAGAAGGCATATTGCCTTTCCTATGAAATACTAAAATGTGGATTTTGGAGTTTGTTCTCTTCTTTCATGTCTAGATATTAATGTGTTTTCAAGCTTTTTAAAGTTCCTCAATCCATAGATAATTTCTGTCATAACTTGAACTGCTTCTATGGGTGAAAATTCCGGCGCTGGCTAATATTTTTCAGTTGATTAGCATTTGACATTCATTTGTTTTTGGCATAAGTTAGGAACTTAACTACGTTGGCATTCATTTGTTTCTTGGCATTTCGCTTTTCCTTCTCGATTTGTCCCTATTTGTGCTTGTTCTTTTCTTTTTCGTTCGATTTATTGTTAGTTGGCTTTATACTGCTTCTCTTATTAGTTGTTATGTTACATTTTCATTAATATTTTTTTCTTCTTCTTTATACCCGAAATTGCTGAACTTGAGCCAAGGGTCTTTACAAAACAACCTCTCTACCTCCACGGGGTAGTGGTAAAGTCTGCGTACACTCTACCCTCCCCAGACCCCACTTGTGGGATTTCACTGGGTAATGTTGTTTTTTGTGGTTGTCAATTTACTTTACTTACCTCTCATTCCTTTTTATTCTTTTTGCAGTGCTTACACCACACAACTAGGTTCAGTGAAGACAGTTGGTTCCAGCTGTATGTAATCCGTTCTTATGGTGAGAATTGAGTTTTCTGCATCAAGCACAATTTTATGCATGCTTTGTCTGATAAACAGTTCTTATCTGTATGTCTTCTTGATTGGAGGTGCTTCAAAATTT-TCTTATTTACCAAGTATTTTGTGTGTTAACAACACTTGCACGCATATCATTTCATTTGCTTGACTGGTGTGCCCTTGTAGAATATTTGAACTTGTACATTTAACCTTGTTCTGCCTTGGGCTATATGCAAGAAACTGAAGAAACCATGTTTCCCCTCCTAGAATTTGGTCAATTTTTGTGATTCAT</genome_strand>
        <mrna_strand>GAGAGAACTAG-TCTC-GAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.........................................................................................................................................................................TAACTTCATGAGAATAGGTGATGAGGTGCAAGAACAGGGACAAGATGGCACTCAACAGGAGAGCCAAAAAGAGGCTGTTGTTGTAAATGCTGACTCTACTGATAGTGCAGTACTCGTCAATGGAAACGAGGCTGAAGAAGAGTGGGGTACGAATACTGAAGGAAAACCGTCAGCCTAAAAGCAATTGGTTGGGCCGGTGTGAAAATCCTAATTTTGTAGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTACACCACATAACTAGGTTCAGTGAAGACAGTTGGTTCCAGCTGTATGTAATCCGTTCTTATGGTGAGAATTGAGTTTTCTGCATCAAGCATAATTTTATGCATCCTTTGTCTGATAAACAGGTCTTATCTGTATGTCTTCTTGATTGGGGGTGCTTCAAATTTTATCTTATTTACCAAGTCTTTTGTGTGTTAACTACACTTGCACGCATATCATTTCATTTGCTTGACT-G-GTGCCCTTGTAGAATATTTGAACTTGTACATTTAACCTTGTTCTGCCTTGGGCTATATGCAAGAAACTGAAGAAGCCATGTTTTTCCCCCTAGAATTTGGTTAATTTTT-TGATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-FUhxYV/sgn_ests_tomato_potato" ref_id="SGN-E417802" ref_strand="+" ref_description="SGN-E417802 [STM-26-K5]">
      <seq>gagagaactagtctcgagttttttttttttttttttttttttttttttttttaacttcatgaaaataggtgatgaggtgcaagaacagggacaagatggcactcaacaggagagccaagaagaggctgttgttgtagatgctgactctactgatagtgcagtactcgtcaatggaaacgaggctgaaaaagagtggggtacgaatactgaaggaaaaccgtcagcctaaaagcaattggttgggccggtgtgaaaatcctaattttgtagctgggcttacaccacataactaggttcagtgaagacagttggttccagctgtatgtaatccgttcttatggggagaattgagttttctgcatcaagcataattttatgcatcctttgtctgataaacagttcttatctgtatgtcttcttgattgggggtgcttcaaattttatcttatttaccaagtcttttgtgtgttaactacacttgcacgcatatcatttcatttgcttgactggtgcccttgtagaatatttgaacttgtacatttaaccttgttctgccttgggctatatgcaagaaactgaagaagccatgtttttccccctagaatttggttaattttttgattcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-LuzcQ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="52399" stop="127491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125670" g_stop="125726" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.561"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125727" i_stop="125883" i_length="157">
            <donor d_prob="0.000" d_score="0.54"/>
            <acceptor a_prob="0.992" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125884" g_stop="126101" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="273" r_length="219" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126102" i_stop="126835" i_length="734">
            <donor d_prob="0.621" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126836" g_stop="127191" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="627" r_length="354" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-E417802" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125670" e_stop="125726"/>
          <exon e_start="125884" e_stop="126101"/>
          <exon e_start="126836" e_stop="127191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAACATAGTGTTAGCATTTTATATTATTTTGTTTATACAATGCTGGGGATTAGGTATGGATGTATGGCATAATAGTTTGAATTTCAAGCATCTTACAACAACCTTATGCTCGATGGTAGTTGATACCCTTCATACAAGCAACTTATACTACTAATCACTGTGGTAAAGGCCATGTTTAAAAGTGATTGTTTTCTTGTTTAAACTCCCCAGGTTGTGGAACAGAATGGTGATGAGGTGCAAGAGCAGGGACAAGATGGCACTCAACAGGAGAGCCAAGAAGAGGC---TGTTGTAGATGCTGAATCTACTGATAGTGCAGTACTCGTCAATGGAAATGAGGCTGAAGAAGAGTGGGGTACGAATACTGAAGGAAAACCGTCAGCCTAAAAGCAATTGGTTGGGCCGGTGTGAAAATCCTAATTTTGTAGCTGGTGATTAATTGAATTTCTTTTAGTTGCTGTGTTTGGCTCCCTATACATTCCAAATCCTTCTCTTTTTTCTTTTATGCCTCCTTTTTTTTCTTTAACCTTAACTGCTTGAAGCAATTGCAATTTAGGCAAACCCAACCTTGAGAAGGCATATTGCCTTTCCTATGAAATACTAAAATGTGGATTTTGGAGTTTGTTCTCTTCTTTCATGTCTAGATATTAATGTGTTTTCAAGCTTTTTAAAGTTCCTCAATCCATAGATAATTTCTGTCATAACTTGAACTGCTTCTATGGGTGAAAATTCCGGCGCTGGCTAATATTTTTCAGTTGATTAGCATTTGACATTCATTTGTTTTTGGCATAAGTTAGGAACTTAACTACGTTGGCATTCATTTGTTTCTTGGCATTTCGCTTTTCCTTCTCGATTTGTCCCTATTTGTGCTTGTTCTTTTCTTTTTCGTTCGATTTATTGTTAGTTGGCTTTATACTGCTTCTCTTATTAGTTGTTATGTTACATTTTCATTAATATTTTTTTCTTCTTCTTTATACCCGAAATTGCTGAACTTGAGCCAAGGGTCTTTACAAAACAACCTCTCTACCTCCACGGGGTAGTGGTAAAGTCTGCGTACACTCTACCCTCCCCAGACCCCACTTGTGGGATTTCACTGGGTAATGTTGTTTTTTGTGGTTGTCAATTTACTTTACTTACCTCTCATTCCTTTTTATTCTTTTTGCAGTGCTTACACCACACAACTAGGTTCAGTGAAGACAGTTGGTTCCAGCTGTATGTAATCCGTTCTTATGGTGAGAATTGAGTTTTCTGCATCAAGCACAATTTTATGCATGCTTTGTCTGATAAACAGTTCTTATCTGTATGTCTTCTTGATTGGAGGTGCTTCAAAATTT-TCTTATTTACCAAGTATTTTGTGTGTTAACAACACTTGCACGCATATCATTTCATTTGCTTGACTGGTGTGCCCTTGTAGAATATTTGAACTTGTACATTTAACCTTGTTCTGCCTTGGGCTATATGCAAGAAACTGAAGAAACCATGTTTCCCCTCCTAGAATTTGGTCAATTTTTGTGATTCATA</genome_strand>
        <mrna_strand>GAGAGAAC-TAGT-CTCGAGTTTTTTTTTTTTTTTTTT-TTTTTTTTTTTTTTTTAA.............................................................................................................................................................CTTCATGAA-A-ATAGGTGATGAGGTGCAAGAACAGGGACAAGATGGCACTCAACAGGAGAGCCAAGAAGAGGCTGTTGTTGTAGATGCTGACTCTACTGATAGTGCAGTACTCGTCAATGGAAACGAGGCTGAAAAAGAGTGGGGTACGAATACTGAAGGAAAACCGTCAGCCTAAAAGCAATTGGTTGGGCCGGTGTGAAAATCCTAATTTTGTAGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTACACCACATAACTAGGTTCAGTGAAGACAGTTGGTTCCAGCTGTATGTAATCCGTTCTTATGGGGAGAATTGAGTTTTCTGCATCAAGCATAATTTTATGCATCCTTTGTCTGATAAACAGTTCTTATCTGTATGTCTTCTTGATTGGGGGTGCTTCAAATTTTATCTTATTTACCAAGTCTTTTGTGTGTTAACTACACTTGCACGCATATCATTTCATTTGCTTGACT-G-GTGCCCTTGTAGAATATTTGAACTTGTACATTTAACCTTGTTCTGCCTTGGGCTATATGCAAGAAACTGAAGAAGCCATGTTTTTCCCCCTAGAATTTGGTTAATTTTT-TGATTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>223</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4451" PGL_stop="6323"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4451" e_stop="4480"/>
            <exon e_start="4559" e_stop="4694"/>
            <exon e_start="4937" e_stop="5059"/>
            <exon e_start="5140" e_stop="5310"/>
            <exon e_start="5673" e_stop="5732"/>
            <exon e_start="5809" e_stop="6323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.452" acc_prob="0.033" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.093" acc_prob="0.774" e_score="1.000"/>
          <exon-intron don_prob="0.741" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.805" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4451" e_stop="4480" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.452" acc_prob="0.033">
            <gDNA_intron_boundary i_start="4481" i_stop="4558" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4559" e_stop="4694" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.992">
            <gDNA_intron_boundary i_start="4695" i_stop="4936" i_length="242"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4937" e_stop="5059" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.093" acc_prob="0.774">
            <gDNA_intron_boundary i_start="5060" i_stop="5139" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5140" e_stop="5310" e_length="171"/>
          </exon>
          <intron i_serial="4" don_prob="0.741" acc_prob="0.996">
            <gDNA_intron_boundary i_start="5311" i_stop="5672" i_length="362"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5673" e_stop="5732" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.805">
            <gDNA_intron_boundary i_start="5733" i_stop="5808" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="5809" e_stop="6323" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4451" stop="4480"/>
              <exon start="4559" stop="4694"/>
              <exon start="4937" stop="5059"/>
              <exon start="5140" stop="5310"/>
              <exon start="5673" stop="5732"/>
              <exon start="5809" stop="5961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4451" stop="4480"/>
              <exon start="4559" stop="4694"/>
              <exon start="4937" stop="5059"/>
              <exon start="5140" stop="5310"/>
              <exon start="5673" stop="5732"/>
              <exon start="5809" stop="5816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4937" stop="5059"/>
              <exon start="5140" stop="5310"/>
              <exon start="5673" stop="5732"/>
              <exon start="5809" stop="6013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4937" stop="5059"/>
              <exon start="5140" stop="5310"/>
              <exon start="5673" stop="5732"/>
              <exon start="5809" stop="5976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5263" stop="5310"/>
              <exon start="5673" stop="5732"/>
              <exon start="5809" stop="6323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377454" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGACTACTGGGCAGCTTATGATAGAACTGG : AGAAGTGCAAAAATTTGCTGATAGAAGTGCATCTGATCAGGCAGCATCTTTGTTTAGTAAAGGTGGAATGGGTTCATCCATCATATTGGACGTGAAAGAGAAGCCAATATATCAATATAGATCCAGATTGAATCAG : GCCACCAGCTCTGCTGTGATGGACCCTGTGACACTGGTGGAGTCGGAATGCTCTACTGCACCCAAACCAATGCATGAAAATTTACTAAGAAAATCTACGACCAAGCTGATATCTGCAAGTGTT : GATTTCTGGATGGGTACTGAATTGCTCTTTACAGACGTATCGGATGCTTTAGAGCTACTTATAAAGCAGTTGAAAGGCCGTCAACTCACCAAAAGGGAGAGAAAGAAAATGAAGAGAACGCTGGGTGATATAGCTACCCTTGTTCCCATAACCATCTTAATGCTAATCCCT : GTTTCTGCAGTGGGTCATGCAGCAATGCTGGCGGCAATCAAGAAATATGTTCCAAGTTTG : ATTCCTTCTCCGTTTTCTTCTGAAAGGCTTGATCTAATGAAACAATTAAAGAGAACGAAGAAGAAAGAAGTCCAAGCTCGAAGCAGCATAGACAACCCTTCTTCTAAAGTTGTAGAGTGAATGCAAGCTGCGGGAAACAACCTTATTATCATGGTGTTGGTGCAGCTTAACTTCTGTAGAGTGGCAAGAGGCGTTGCACATATACCTTATAATAGCCAATGCAAGAAACTATCAGTAAGAGGAAACAGAAACAACGCTTTTTCACAAGCACATGTACACACAGATCCTGCTAAATTTAGTTCTAGAGAAAGCAACTTTGTTTTTGATCAACTGTATTTTCTCTAGGCGTCATCTGACAATTGTTCATATTTATCCATGGTTTAAAACGAAGCTTTCGAGTTCCTAAATTTCTAATTCTTGCAATCATCTGACTATTTTTCATATTTGTACAGTGTATACTTATGAGCTCTTAGTAGCATTTTCTTTTTACTGAGGAGCAGGTGGATGTTTTTAAA</gDNA_template>
            <first_frame> G  L  L  G  S  L  *  *  N  W  :  R  S  A  K  I  C  *  *  K  C  I  *  S  G  S  I  F  V  *  *  R  W  N  G  F  I  H  H  I  G  R  E  R  E  A  N  I  S  I  *  I  Q  I  E  S   : G  H  Q  L  C  C  D  G  P  C  D  T  G  G  V  G  M  L  Y  C  T  Q  T  N  A  *  K  F  T  K  K  I  Y  D  Q  A  D  I  C  K  C   : *  F  L  D  G  Y  *  I  A  L  Y  R  R  I  G  C  F  R  A  T  Y  K  A  V  E  R  P  S  T  H  Q  K  G  E  K  E  N  E  E  N  A  G  *  Y  S  Y  P  C  S  H  N  H  L  N  A  N  P   : C  F  C  S  G  S  C  S  N  A  G  G  N  Q  E  I  C  S  K  F   : D  S  F  S  V  F  F  *  K  A  *  S  N  E  T  I  K  E  N  E  E  E  R  S  P  S  S  K  Q  H  R  Q  P  F  F  *  S  C  R  V  N  A  S  C  G  K  Q  P  Y  Y  H  G  V  G  A  A  *  L  L  *  S  G  K  R  R  C  T  Y  T  L  *  *  P  M  Q  E  T  I  S  K  R  K  Q  K  Q  R  F  F  T  S  T  C  T  H  R  S  C  *  I  *  F  *  R  K  Q  L  C  F  *  S  T  V  F  S  L  G  V  I  *  Q  L  F  I  F  I  H  G  L  K  R  S  F  R  V  P  K  F  L  I  L  A  I  I  *  L  F  F  I  F  V  Q  C  I  L  M  S  S  *  *  H  F  L  F  T  E  E  Q  V  D  V  F  K </first_frame>
            <second_frame>  D  Y  W  A  A  Y  D  R  T  G :   E  V  Q  K  F  A  D  R  S  A  S  D  Q  A  A  S  L  F  S  K  G  G  M  G  S  S  I  I  L  D  V  K  E  K  P  I  Y  Q  Y  R  S  R  L  N  Q  :  A  T  S  S  A  V  M  D  P  V  T  L  V  E  S  E  C  S  T  A  P  K  P  M  H  E  N  L  L  R  K  S  T  T  K  L  I  S  A  S  V  :  D  F  W  M  G  T  E  L  L  F  T  D  V  S  D  A  L  E  L  L  I  K  Q  L  K  G  R  Q  L  T  K  R  E  R  K  K  M  K  R  T  L  G  D  I  A  T  L  V  P  I  T  I  L  M  L  I  P  :  V  S  A  V  G  H  A  A  M  L  A  A  I  K  K  Y  V  P  S  L  :  I  P  S  P  F  S  S  E  R  L  D  L  M  K  Q  L  K  R  T  K  K  K  E  V  Q  A  R  S  S  I  D  N  P  S  S  K  V  V  E  *  M  Q  A  A  G  N  N  L  I  I  M  V  L  V  Q  L  N  F  C  R  V  A  R  G  V  A  H  I  P  Y  N  S  Q  C  K  K  L  S  V  R  G  N  R  N  N  A  F  S  Q  A  H  V  H  T  D  P  A  K  F  S  S  R  E  S  N  F  V  F  D  Q  L  Y  F  L  *  A  S  S  D  N  C  S  Y  L  S  M  V  *  N  E  A  F  E  F  L  N  F  *  F  L  Q  S  S  D  Y  F  S  Y  L  Y  S  V  Y  L  *  A  L  S  S  I  F  F  L  L  R  S  R  W  M  F  L   </second_frame>
            <third_frame>   T  T  G  Q  L  M  I  E  L   : E  K  C  K  N  L  L  I  E  V  H  L  I  R  Q  H  L  C  L  V  K  V  E  W  V  H  P  S  Y  W  T  *  K  R  S  Q  Y  I  N  I  D  P  D  *  I  R :   P  P  A  L  L  *  W  T  L  *  H  W  W  S  R  N  A  L  L  H  P  N  Q  C  M  K  I  Y  *  E  N  L  R  P  S  *  Y  L  Q  V  L :   I  S  G  W  V  L  N  C  S  L  Q  T  Y  R  M  L  *  S  Y  L  *  S  S  *  K  A  V  N  S  P  K  G  R  E  R  K  *  R  E  R  W  V  I  *  L  P  L  F  P  *  P  S  *  C  *  S  L :   F  L  Q  W  V  M  Q  Q  C  W  R  Q  S  R  N  M  F  Q  V  * :   F  L  L  R  F  L  L  K  G  L  I  *  *  N  N  *  R  E  R  R  R  K  K  S  K  L  E  A  A  *  T  T  L  L  L  K  L  *  S  E  C  K  L  R  E  T  T  L  L  S  W  C  W  C  S  L  T  S  V  E  W  Q  E  A  L  H  I  Y  L  I  I  A  N  A  R  N  Y  Q  *  E  E  T  E  T  T  L  F  H  K  H  M  Y  T  Q  I  L  L  N  L  V  L  E  K  A  T  L  F  L  I  N  C  I  F  S  R  R  H  L  T  I  V  H  I  Y  P  W  F  K  T  K  L  S  S  S  *  I  S  N  S  C  N  H  L  T  I  F  H  I  C  T  V  Y  T  Y  E  L  L  V  A  F  S  F  Y  *  G  A  G  G  C  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4452" stop="4480"/>
                    <exon start="4559" stop="4694"/>
                    <exon start="4937" stop="5059"/>
                    <exon start="5140" stop="5310"/>
                    <exon start="5673" stop="5732"/>
                    <exon start="5809" stop="5928"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYWAAYDRTGEVQKFADRSASDQAASLFSKGGMGSSIILDVKEKPIYQYRSRLNQATSSAVMDPVTLVESECSTAPKPMHENLLRKSTTKLISASVDFWMGTELLFTDVSDALELLIKQLKGRQLTKRERKKMKRTLGDIATLVPITILMLIPVSAVGHAAMLAAIKKYVPSLIPSPFSSERLDLMKQLKRTKKKEVQARSSIDNPSSKVVE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5929" stop="6153"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQAAGNNLIIMVLVQLNFCRVARGVAHIPYNSQCKKLSVRGNRNNAFSQAHVHTDPAKFSSRESNFVFDQLYFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8956" PGL_stop="7790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8956" e_stop="8796"/>
            <exon e_start="8449" e_stop="8199"/>
            <exon e_start="8061" e_stop="7790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.801" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8956" e_stop="8796" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="8795" i_stop="8450" i_length="346"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8449" e_stop="8199" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.801" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8198" i_stop="8062" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="8061" e_stop="7790" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8956" stop="8796"/>
              <exon start="8449" stop="8199"/>
              <exon start="8061" stop="7790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8955" stop="8796"/>
              <exon start="8449" stop="8262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTATTGCAGCGTTTAATTAATTTTAGTCTCAAAATGCCTTGTATAGCTTAGGACGTTTTGACGATTCGCTCAATTGTGGGTCTATTAAGGCCTATCTTGCTGAATTTATCTCCACCTTGCTTTTCGTCTTCGCCGGTGTTGGTTCTGCCATTGCCTACA : ATAAGTTGACAGCAGATGCTGCTCTTGATCCTGCCGGACTAGTTGCGGTAGCAGTTTGCCATGGATTTGCTCTCTTCGTGGCCGTTTCTATTGGTGCTAACATCTCCGGTGGTCACGTTAATCCCGCTGTTACTTTTGGTTTAGCTCTTGGAGGCCAAATTACCCTTCTCACCGGCCTGTTTTACTGGGTGGCTCAGCTTTTGGGCGCCATAGTTGCTTGCTGCCTCCTCAAGTTTGTTACCGGAGGATTG : ACTGTTCCAATCCACGGTGTGGCAGCTGGTGTAGGAGCTACTGAAGGAGTTGTAATGGAAATTATCATCACATTCGCGTTGGTGTACACTGTGTACGCCACAGCAGCTGACCCCAAGAAGGGATCATTGGGTACAATTGCACCTATTGCCATTGGTTTCATTGTTGGTGCTAACATTTTGGCTGCGGGCCCATTCTCCGGAGGTTCAATGAATCCAGCCCGTTCTTTTGGGCCTGCAGTTGTTAGTGGCAACTTCGCTGGTAACTGGATTTA</gDNA_template>
            <first_frame> V  Y  C  S  V  *  L  I  L  V  S  K  C  L  V  *  L  R  T  F  *  R  F  A  Q  L  W  V  Y  *  G  L  S  C  *  I  Y  L  H  L  A  F  R  L  R  R  C  W  F  C  H  C  L  Q :   *  V  D  S  R  C  C  S  *  S  C  R  T  S  C  G  S  S  L  P  W  I  C  S  L  R  G  R  F  Y  W  C  *  H  L  R  W  S  R  *  S  R  C  Y  F  W  F  S  S  W  R  P  N  Y  P  S  H  R  P  V  L  L  G  G  S  A  F  G  R  H  S  C  L  L  P  P  Q  V  C  Y  R  R  I   : D  C  S  N  P  R  C  G  S  W  C  R  S  Y  *  R  S  C  N  G  N  Y  H  H  I  R  V  G  V  H  C  V  R  H  S  S  *  P  Q  E  G  I  I  G  Y  N  C  T  Y  C  H  W  F  H  C  W  C  *  H  F  G  C  G  P  I  L  R  R  F  N  E  S  S  P  F  F  W  A  C  S  C  *  W  Q  L  R  W  *  L  D  L </first_frame>
            <second_frame>  F  I  A  A  F  N  *  F  *  S  Q  N  A  L  Y  S  L  G  R  F  D  D  S  L  N  C  G  S  I  K  A  Y  L  A  E  F  I  S  T  L  L  F  V  F  A  G  V  G  S  A  I  A  Y   : N  K  L  T  A  D  A  A  L  D  P  A  G  L  V  A  V  A  V  C  H  G  F  A  L  F  V  A  V  S  I  G  A  N  I  S  G  G  H  V  N  P  A  V  T  F  G  L  A  L  G  G  Q  I  T  L  L  T  G  L  F  Y  W  V  A  Q  L  L  G  A  I  V  A  C  C  L  L  K  F  V  T  G  G  L  :  T  V  P  I  H  G  V  A  A  G  V  G  A  T  E  G  V  V  M  E  I  I  I  T  F  A  L  V  Y  T  V  Y  A  T  A  A  D  P  K  K  G  S  L  G  T  I  A  P  I  A  I  G  F  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  V  V  S  G  N  F  A  G  N  W  I   </second_frame>
            <third_frame>   L  L  Q  R  L  I  N  F  S  L  K  M  P  C  I  A  *  D  V  L  T  I  R  S  I  V  G  L  L  R  P  I  L  L  N  L  S  P  P  C  F  S  S  S  P  V  L  V  L  P  L  P  T  :  I  S  *  Q  Q  M  L  L  L  I  L  P  D  *  L  R  *  Q  F  A  M  D  L  L  S  S  W  P  F  L  L  V  L  T  S  P  V  V  T  L  I  P  L  L  L  L  V  *  L  L  E  A  K  L  P  F  S  P  A  C  F  T  G  W  L  S  F  W  A  P  *  L  L  A  A  S  S  S  L  L  P  E  D  * :   L  F  Q  S  T  V  W  Q  L  V  *  E  L  L  K  E  L  *  W  K  L  S  S  H  S  R  W  C  T  L  C  T  P  Q  Q  L  T  P  R  R  D  H  W  V  Q  L  H  L  L  P  L  V  S  L  L  V  L  T  F  W  L  R  A  H  S  P  E  V  Q  *  I  Q  P  V  L  L  G  L  Q  L  L  V  A  T  S  L  V  T  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8928" stop="8796"/>
                    <exon start="8449" stop="8199"/>
                    <exon start="8061" stop="7792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQNALYSLGRFDDSLNCGSIKAYLAEFISTLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVCHGFALFVAVSIGANISGGHVNPAVTFGLALGGQITLLTGLFYWVAQLLGAIVACCLLKFVTGGLTVPIHGVAAGVGATEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFAGNWI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12753" PGL_stop="22881"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12753" e_stop="13050"/>
            <exon e_start="13852" e_stop="13965"/>
            <exon e_start="14072" e_stop="14225"/>
            <exon e_start="15071" e_stop="15207"/>
            <exon e_start="16989" e_stop="17089"/>
            <exon e_start="17889" e_stop="18006"/>
            <exon e_start="18278" e_stop="18444"/>
            <exon e_start="18999" e_stop="19354"/>
            <exon e_start="19683" e_stop="19700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.993" e_score="0.993"/>
          <exon-intron don_prob="0.984" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.230" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.361" e_score="1.000"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12753" e_stop="13050" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13852" e_stop="13965" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.964">
            <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14072" e_stop="14225" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14226" i_stop="15070" i_length="845"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="15071" e_stop="15207" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.993">
            <gDNA_intron_boundary i_start="15208" i_stop="16988" i_length="1781"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16989" e_stop="17089" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.984">
            <gDNA_intron_boundary i_start="17090" i_stop="17888" i_length="799"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17889" e_stop="18006" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.230" acc_prob="0.857">
            <gDNA_intron_boundary i_start="18007" i_stop="18277" i_length="271"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18278" e_stop="18444" e_length="167"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.967">
            <gDNA_intron_boundary i_start="18445" i_stop="18998" i_length="554"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18999" e_stop="19354" e_length="356"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.361">
            <gDNA_intron_boundary i_start="19355" i_stop="19682" i_length="328"/>
          </intron>
          <exon e_serial="9" e_score="0.722">
            <gDNA_exon_boundary e_start="19683" e_stop="19700" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12753" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12762" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12773" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12777" stop="13050"/>
              <exon start="13852" stop="13918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12789" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15207"/>
              <exon start="16989" stop="17074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12790" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12796" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12797" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12802" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12811" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13888" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15163" stop="15207"/>
              <exon start="16989" stop="17089"/>
              <exon start="17889" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16989" stop="17089"/>
              <exon start="17889" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16989" stop="17089"/>
              <exon start="17889" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17072" stop="17089"/>
              <exon start="17889" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19354"/>
              <exon start="19683" stop="19700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538001" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17915" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTGTCTCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG : TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG : CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG : TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAG : AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG : GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG : GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG : GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTTATTGAGTGCTTTAATTTTTTAATAGTGTGGTTGTCCCTTTTCCTGTATTTTACATCTCATTTGTTTATTTAATTGAAAGATAATTTTCTCAA : ACTAAAAAAAATAGGATC</gDNA_template>
            <first_frame> L  C  L  K  F  V  C  V  V  K  S  V  L  N  *  K  D  C  S  P  G  F  R  Y  A  I  A  A  G  D  H  Q  F  L  H  R  I  S  H  Y  S  *  N  S  L  N  Y  L  V  R  P  R  Y  G  Q  T  K  P  S  F  I  L  R  S  P  W  W  C  D  C  P  S  S  P  T  T  R  C  L  D  Q  Y  L  P  E  F  A  S  S  M  A  I  S  S  S  S  T  A  T   : V  S  H  S  N  I  N  I  Q  S  *  S  G  R  C  W  K  T  G  H  *  N  V  S  H  A  K  R  A  V  G  *  G  L  F  F  D  E   : A  R  N  V  I  S  I  *  T  R  T  *  C  F  S  *  V  S  N  L  A  I  F  Y  L  G  *  *  A  Y  S  W  *  C  S  H  E  S  E  I  Q  R  *  T  C  K  *  D  *  R  K  S :   E  D  W  I  R  G  T  R  T  Y  C  C  S  K  D  M  V  L  C  C  N  S  W  W  S  I  Y  M  G  S  S  T  I  I  F  C  F  S  E  M  G  *  L  *  A   : E  V  L  G  T  W  S  V  V  V  N  A  T  D  G  G  Y  L  *  S  S  I  F  *  Q  F  T  S  L  S  L  H  R  K  :  V  Q  E  S  H  *  K  S  F  K  S  *  T  C  L  W  E  P  K  Y  E  Q  S  C  E  L  *  V  H  E  S  S  V  G  L  E  *  I  L   : G  T  A  A  L  A  S  S  P  S  Q  F  S  I  C  Q  E  F  P  S  S  I  L  K  G  Q  I  F  R  F  F  S  R  *  N  F  M  P  H  L  P  G  N  P  I  N  S  I  C  S  Y  P  L  S  A  *  :  V  L  L  L  L  S  S  N  K  V  L  C  I  F  I  V  S  L  P  Q  M  W  *  T  S  C  C  Y  A  T  A  W  W  F  S  Q  Q  H  S  S  E  T  M  I  V  L  Q  S  D  *  N  D  K  K  K  G  S  *  V  K  L  *  I  K  S  C  S  K  D  N  L  T  M  K  L  G  I  *  I  P  *  *  S  L  L  F  C  F  I  E  C  F  N  F  L  I  V  W  L  S  L  F  L  Y  F  T  S  H  L  F  I  *  L  K  D  N  F  L  K :   L  K  K  I  G   </first_frame>
            <second_frame>  C  V  S  N  L  S  A  W  S  S  Q  C  *  T  E  K  I  A  H  R  G  S  G  T  Q  S  P  P  A  T  T  N  F  F  I  A  Y  P  T  I  V  K  I  H  *  I  I  *  Y  G  R  D  M  D  R  Q  N  L  A  S  S  S  A  P  R  G  G  A  T  V  H  P  P  P  Q  H  D  A  W  I  N  T  Y  R  N  L  H  P  Q  W  Q  S  L  L  P  P  P  Q  Q  :  S  A  I  P  I  S  I  S  R  V  N  Q  V  D  A  G  R  L  D  I  E  M  S  A  M  L  K  E  Q  L  V  K  V  F  S  L  M  K  :  P  G  M  L  F  Q  Y  E  P  E  L  D  A  F  L  E  F  L  I  W  R  F  S  I  W  V  D  K  P  T  P  G  N  A  L  M  N  L  R  Y  R  D  E  R  A  S  E  I  R  G  K   : V  R  T  G  L  E  G  P  G  L  T  V  A  Q  K  I  W  Y  C  V  A  T  V  G  G  Q  Y  I  W  A  R  L  Q  S  F  S  A  F  R  R  W  G  D  S  E  Q  :  R  S  L  A  R  G  V  W  L  L  M  Q  R  M  E  G  I  Y  K  A  A  S  F  S  N  L  L  L  F  L  Y  T  G  R :   F  R  N  L  I  E  R  A  L  R  A  R  L  V  Y  G  S  P  N  M  N  R  A  V  S  F  E  Y  M  N  R  Q  L  V  W  N  E  F  S  :  E  L  L  L  L  L  L  P  L  L  N  S  A  S  V  K  S  F  L  R  P  F  S  K  D  K  S  S  D  S  S  V  D  E  T  L  C  P  I  C  Q  G  T  P  S  I  P  F  V  A  I  P  C  Q  H  R :   Y  C  Y  Y  C  L  Q  T  R  C  S  A  S  S  S  F  R  C  P  R  C  G  E  P  V  A  A  M  Q  R  H  G  G  L  V  S  N  I  P  Q  K  Q  *  L  F  C  K  V  I  E  M  I  K  K  R  E  A  K  L  N  Y  R  S  K  V  A  Q  K  T  T  *  Q  *  N  *  V  S  R  F  L  N  K  A  Y  C  S  A  L  L  S  A  L  I  F  *  *  C  G  C  P  F  S  C  I  L  H  L  I  C  L  F  N  *  K  I  I  F  S   : N  *  K  K  *  D  </second_frame>
            <third_frame>   V  S  Q  I  C  L  R  G  Q  V  S  A  E  L  K  R  L  L  T  G  V  P  V  R  N  R  R  R  R  P  P  I  S  S  S  H  I  P  L  *  L  K  F  I  E  L  S  S  T  A  E  I  W  T  D  K  T  *  L  H  P  P  L  P  V  V  V  R  L  S  I  L  P  H  N  T  M  L  G  S  I  L  T  G  I  C  I  L  N  G  N  L  F  F  L  H  R  N  S :   Q  P  F  Q  Y  Q  Y  P  E  L  I  R  *  M  L  E  D  W  T  L  K  C  Q  P  C  *  K  S  S  W  L  R  S  F  L  *  *  S :   Q  E  C  Y  F  N  M  N  Q  N  L  M  L  F  L  S  F  *  S  G  D  F  L  S  G  L  I  S  L  L  L  V  M  L  S  *  I  *  D  T  E  M  N  V  Q  V  R  L  E  E  K  :  *  G  L  D  *  R  D  Q  D  L  L  L  L  K  R  Y  G  T  V  L  Q  Q  L  V  V  N  I  Y  G  L  V  Y  N  H  F  L  L  F  G  D  G  V  T  L  S  R :   G  P  W  H  V  E  C  G  C  *  C  N  G  W  R  V  S  I  K  Q  H  L  L  A  I  Y  F  S  F  F  T  Q  E   : G  S  G  I  S  L  K  E  L  *  E  L  D  L  F  M  G  A  Q  I  *  T  E  L  *  A  L  S  T  *  I  V  S  W  S  G  M  N  S  R :   N  C  C  S  C  F  F  P  F  S  I  Q  H  L  S  R  V  S  F  V  H  S  Q  R  T  N  L  Q  I  L  Q  *  M  K  L  Y  A  P  S  A  R  E  P  H  Q  F  H  L  *  L  S  L  V  S  I   : G  T  V  T  T  V  F  K  Q  G  A  L  H  L  H  R  F  V  A  P  D  V  V  N  Q  L  L  L  C  N  G  M  V  V  *  S  A  T  F  L  R  N  N  D  C  S  A  K  *  L  K  *  *  K  K  G  K  L  S  *  T  I  D  Q  K  L  L  K  R  Q  L  D  N  E  T  R  Y  L  D  S  L  I  K  L  I  V  L  L  Y  *  V  L  *  F  F  N  S  V  V  V  P  F  P  V  F  Y  I  S  F  V  Y  L  I  E  R  *  F  S  Q  :  T  K  K  N  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12898" stop="13050"/>
                    <exon start="13852" stop="13965"/>
                    <exon start="14072" stop="14225"/>
                    <exon start="15071" stop="15207"/>
                    <exon start="16989" stop="17089"/>
                    <exon start="17889" stop="18006"/>
                    <exon start="18278" stop="18444"/>
                    <exon start="18999" stop="19128"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGRDMDRQNLASSSAPRGGATVHPPPQHDAWINTYRNLHPQWQSLLPPPQQSAIPISISRVNQVDAGRLDIEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERASEIRGKVRTGLEGPGLTVAQKIWYCVATVGGQYIWARLQSFSAFRRWGDSEQRSLARGVWLLMQRMEGIYKAASFSNLLLFLYTGRFRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSELLLLLLPLLNSASVKSFLRPFSKDKSSDSSVDETLCPICQGTPSIPFVAIPCQHRYCYYCLQTRCSASSSFRCPRCGEPVAAMQRHGGLVSNIPQKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12753" e_stop="13050"/>
            <exon e_start="13852" e_stop="13965"/>
            <exon e_start="14072" e_stop="14225"/>
            <exon e_start="15071" e_stop="15207"/>
            <exon e_start="16989" e_stop="17089"/>
            <exon e_start="17889" e_stop="18006"/>
            <exon e_start="18278" e_stop="18444"/>
            <exon e_start="18999" e_stop="19263"/>
            <exon e_start="22522" e_stop="22538"/>
            <exon e_start="22860" e_stop="22881"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.993" e_score="0.993"/>
          <exon-intron don_prob="0.984" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.230" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.045" acc_prob="0.000" e_score="0.765"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12753" e_stop="13050" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13852" e_stop="13965" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.964">
            <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14072" e_stop="14225" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14226" i_stop="15070" i_length="845"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="15071" e_stop="15207" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.993">
            <gDNA_intron_boundary i_start="15208" i_stop="16988" i_length="1781"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16989" e_stop="17089" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.984">
            <gDNA_intron_boundary i_start="17090" i_stop="17888" i_length="799"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17889" e_stop="18006" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.230" acc_prob="0.857">
            <gDNA_intron_boundary i_start="18007" i_stop="18277" i_length="271"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18278" e_stop="18444" e_length="167"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.967">
            <gDNA_intron_boundary i_start="18445" i_stop="18998" i_length="554"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18999" e_stop="19263" e_length="265"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19264" i_stop="22521" i_length="3258"/>
          </intron>
          <exon e_serial="9" e_score="0.765">
            <gDNA_exon_boundary e_start="22522" e_stop="22538" e_length="17"/>
          </exon>
          <intron i_serial="9" don_prob="0.045" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22539" i_stop="22859" i_length="321"/>
          </intron>
          <exon e_serial="10" e_score="0.909">
            <gDNA_exon_boundary e_start="22860" e_stop="22881" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12753" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12762" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12773" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12777" stop="13050"/>
              <exon start="13852" stop="13918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12789" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15207"/>
              <exon start="16989" stop="17074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12790" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12796" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12797" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12802" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12811" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13888" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15163" stop="15207"/>
              <exon start="16989" stop="17089"/>
              <exon start="17889" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16989" stop="17089"/>
              <exon start="17889" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16989" stop="17089"/>
              <exon start="17889" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17915" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19076" stop="19263"/>
              <exon start="22522" stop="22538"/>
              <exon start="22860" stop="22881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620245" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTGTCTCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG : TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG : CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG : TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAG : AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG : GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG : GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG : GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTTA : AAAATACAATAACAAAG : AAAAAAAAGGAAAAAAAAAATA</gDNA_template>
            <first_frame> L  C  L  K  F  V  C  V  V  K  S  V  L  N  *  K  D  C  S  P  G  F  R  Y  A  I  A  A  G  D  H  Q  F  L  H  R  I  S  H  Y  S  *  N  S  L  N  Y  L  V  R  P  R  Y  G  Q  T  K  P  S  F  I  L  R  S  P  W  W  C  D  C  P  S  S  P  T  T  R  C  L  D  Q  Y  L  P  E  F  A  S  S  M  A  I  S  S  S  S  T  A  T   : V  S  H  S  N  I  N  I  Q  S  *  S  G  R  C  W  K  T  G  H  *  N  V  S  H  A  K  R  A  V  G  *  G  L  F  F  D  E   : A  R  N  V  I  S  I  *  T  R  T  *  C  F  S  *  V  S  N  L  A  I  F  Y  L  G  *  *  A  Y  S  W  *  C  S  H  E  S  E  I  Q  R  *  T  C  K  *  D  *  R  K  S :   E  D  W  I  R  G  T  R  T  Y  C  C  S  K  D  M  V  L  C  C  N  S  W  W  S  I  Y  M  G  S  S  T  I  I  F  C  F  S  E  M  G  *  L  *  A   : E  V  L  G  T  W  S  V  V  V  N  A  T  D  G  G  Y  L  *  S  S  I  F  *  Q  F  T  S  L  S  L  H  R  K  :  V  Q  E  S  H  *  K  S  F  K  S  *  T  C  L  W  E  P  K  Y  E  Q  S  C  E  L  *  V  H  E  S  S  V  G  L  E  *  I  L   : G  T  A  A  L  A  S  S  P  S  Q  F  S  I  C  Q  E  F  P  S  S  I  L  K  G  Q  I  F  R  F  F  S  R  *  N  F  M  P  H  L  P  G  N  P  I  N  S  I  C  S  Y  P  L  S  A  *  :  V  L  L  L  L  S  S  N  K  V  L  C  I  F  I  V  S  L  P  Q  M  W  *  T  S  C  C  Y  A  T  A  W  W  F  S  Q  Q  H  S  S  E  T  M  I  V  L  Q  S  D  *  N  D  K  K  K  G  S  *  V  K  L  *  I  K  S  C  S  K  D  N  L  T  M  K  L  G  I  *  I  P  *  *  S  L  L  F  C  F   : K  N  T  I  T  K  :  K  K  K  E  K  K  N  </first_frame>
            <second_frame>  C  V  S  N  L  S  A  W  S  S  Q  C  *  T  E  K  I  A  H  R  G  S  G  T  Q  S  P  P  A  T  T  N  F  F  I  A  Y  P  T  I  V  K  I  H  *  I  I  *  Y  G  R  D  M  D  R  Q  N  L  A  S  S  S  A  P  R  G  G  A  T  V  H  P  P  P  Q  H  D  A  W  I  N  T  Y  R  N  L  H  P  Q  W  Q  S  L  L  P  P  P  Q  Q  :  S  A  I  P  I  S  I  S  R  V  N  Q  V  D  A  G  R  L  D  I  E  M  S  A  M  L  K  E  Q  L  V  K  V  F  S  L  M  K  :  P  G  M  L  F  Q  Y  E  P  E  L  D  A  F  L  E  F  L  I  W  R  F  S  I  W  V  D  K  P  T  P  G  N  A  L  M  N  L  R  Y  R  D  E  R  A  S  E  I  R  G  K   : V  R  T  G  L  E  G  P  G  L  T  V  A  Q  K  I  W  Y  C  V  A  T  V  G  G  Q  Y  I  W  A  R  L  Q  S  F  S  A  F  R  R  W  G  D  S  E  Q  :  R  S  L  A  R  G  V  W  L  L  M  Q  R  M  E  G  I  Y  K  A  A  S  F  S  N  L  L  L  F  L  Y  T  G  R :   F  R  N  L  I  E  R  A  L  R  A  R  L  V  Y  G  S  P  N  M  N  R  A  V  S  F  E  Y  M  N  R  Q  L  V  W  N  E  F  S  :  E  L  L  L  L  L  L  P  L  L  N  S  A  S  V  K  S  F  L  R  P  F  S  K  D  K  S  S  D  S  S  V  D  E  T  L  C  P  I  C  Q  G  T  P  S  I  P  F  V  A  I  P  C  Q  H  R :   Y  C  Y  Y  C  L  Q  T  R  C  S  A  S  S  S  F  R  C  P  R  C  G  E  P  V  A  A  M  Q  R  H  G  G  L  V  S  N  I  P  Q  K  Q  *  L  F  C  K  V  I  E  M  I  K  K  R  E  A  K  L  N  Y  R  S  K  V  A  Q  K  T  T  *  Q  *  N  *  V  S  R  F  L  N  K  A  Y  C  S  A  L  :  K  I  Q  *  Q  R :   K  K  R  K  K  K  I </second_frame>
            <third_frame>   V  S  Q  I  C  L  R  G  Q  V  S  A  E  L  K  R  L  L  T  G  V  P  V  R  N  R  R  R  R  P  P  I  S  S  S  H  I  P  L  *  L  K  F  I  E  L  S  S  T  A  E  I  W  T  D  K  T  *  L  H  P  P  L  P  V  V  V  R  L  S  I  L  P  H  N  T  M  L  G  S  I  L  T  G  I  C  I  L  N  G  N  L  F  F  L  H  R  N  S :   Q  P  F  Q  Y  Q  Y  P  E  L  I  R  *  M  L  E  D  W  T  L  K  C  Q  P  C  *  K  S  S  W  L  R  S  F  L  *  *  S :   Q  E  C  Y  F  N  M  N  Q  N  L  M  L  F  L  S  F  *  S  G  D  F  L  S  G  L  I  S  L  L  L  V  M  L  S  *  I  *  D  T  E  M  N  V  Q  V  R  L  E  E  K  :  *  G  L  D  *  R  D  Q  D  L  L  L  L  K  R  Y  G  T  V  L  Q  Q  L  V  V  N  I  Y  G  L  V  Y  N  H  F  L  L  F  G  D  G  V  T  L  S  R :   G  P  W  H  V  E  C  G  C  *  C  N  G  W  R  V  S  I  K  Q  H  L  L  A  I  Y  F  S  F  F  T  Q  E   : G  S  G  I  S  L  K  E  L  *  E  L  D  L  F  M  G  A  Q  I  *  T  E  L  *  A  L  S  T  *  I  V  S  W  S  G  M  N  S  R :   N  C  C  S  C  F  F  P  F  S  I  Q  H  L  S  R  V  S  F  V  H  S  Q  R  T  N  L  Q  I  L  Q  *  M  K  L  Y  A  P  S  A  R  E  P  H  Q  F  H  L  *  L  S  L  V  S  I   : G  T  V  T  T  V  F  K  Q  G  A  L  H  L  H  R  F  V  A  P  D  V  V  N  Q  L  L  L  C  N  G  M  V  V  *  S  A  T  F  L  R  N  N  D  C  S  A  K  *  L  K  *  *  K  K  G  K  L  S  *  T  I  D  Q  K  L  L  K  R  Q  L  D  N  E  T  R  Y  L  D  S  L  I  K  L  I  V  L  L  * :   K  Y  N  N  K   : E  K  K  G  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12898" stop="13050"/>
                    <exon start="13852" stop="13965"/>
                    <exon start="14072" stop="14225"/>
                    <exon start="15071" stop="15207"/>
                    <exon start="16989" stop="17089"/>
                    <exon start="17889" stop="18006"/>
                    <exon start="18278" stop="18444"/>
                    <exon start="18999" stop="19128"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGRDMDRQNLASSSAPRGGATVHPPPQHDAWINTYRNLHPQWQSLLPPPQQSAIPISISRVNQVDAGRLDIEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERASEIRGKVRTGLEGPGLTVAQKIWYCVATVGGQYIWARLQSFSAFRRWGDSEQRSLARGVWLLMQRMEGIYKAASFSNLLLFLYTGRFRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSELLLLLLPLLNSASVKSFLRPFSKDKSSDSSVDETLCPICQGTPSIPFVAIPCQHRYCYYCLQTRCSASSSFRCPRCGEPVAAMQRHGGLVSNIPQKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14893" e_stop="15207"/>
            <exon e_start="16989" e_stop="17089"/>
            <exon e_start="17889" e_stop="18006"/>
            <exon e_start="18278" e_stop="18444"/>
            <exon e_start="18999" e_stop="19354"/>
            <exon e_start="19683" e_stop="19700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.230" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.361" e_score="1.000"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14893" e_stop="15207" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.993">
            <gDNA_intron_boundary i_start="15208" i_stop="16988" i_length="1781"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16989" e_stop="17089" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.984">
            <gDNA_intron_boundary i_start="17090" i_stop="17888" i_length="799"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17889" e_stop="18006" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.230" acc_prob="0.857">
            <gDNA_intron_boundary i_start="18007" i_stop="18277" i_length="271"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18278" e_stop="18444" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.967">
            <gDNA_intron_boundary i_start="18445" i_stop="18998" i_length="554"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18999" e_stop="19354" e_length="356"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.361">
            <gDNA_intron_boundary i_start="19355" i_stop="19682" i_length="328"/>
          </intron>
          <exon e_serial="6" e_score="0.722">
            <gDNA_exon_boundary e_start="19683" e_stop="19700" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14893" stop="15207"/>
              <exon start="16989" stop="17089"/>
              <exon start="17889" stop="18006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14893" stop="15207"/>
              <exon start="16989" stop="17084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14893" stop="15202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14903" stop="15202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15163" stop="15207"/>
              <exon start="16989" stop="17089"/>
              <exon start="17889" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16989" stop="17089"/>
              <exon start="17889" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16989" stop="17089"/>
              <exon start="17889" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17072" stop="17089"/>
              <exon start="17889" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19354"/>
              <exon start="19683" stop="19700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538001" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17915" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAG : AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG : GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG : GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG : GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTTATTGAGTGCTTTAATTTTTTAATAGTGTGGTTGTCCCTTTTCCTGTATTTTACATCTCATTTGTTTATTTAATTGAAAGATAATTTTCTCAA : ACTAAAAAAAATAGGATC</gDNA_template>
            <first_frame> I  S  K  G  V  *  S  I  *  F  G  R  I  V  L  E  N  L  L  C  L  T  L  C  L  K  C  *  G  *  Q  L  D  A  V  S  F  F  L  S  C  I  N  C  Y  N  F  S  C  S  S  V  S  F  S  M  F  F  I  V  R  T  G  L  E  G  P  G  L  T  V  A  Q  K  I  W  Y  C  V  A  T  V  G  G  Q  Y  I  W  A  R  L  Q  S  F  S  A  F  R  R  W  G  D  S  E  Q  :  R  S  L  A  R  G  V  W  L  L  M  Q  R  M  E  G  I  Y  K  A  A  S  F  S  N  L  L  L  F  L  Y  T  G  R :   F  R  N  L  I  E  R  A  L  R  A  R  L  V  Y  G  S  P  N  M  N  R  A  V  S  F  E  Y  M  N  R  Q  L  V  W  N  E  F  S  :  E  L  L  L  L  L  L  P  L  L  N  S  A  S  V  K  S  F  L  R  P  F  S  K  D  K  S  S  D  S  S  V  D  E  T  L  C  P  I  C  Q  G  T  P  S  I  P  F  V  A  I  P  C  Q  H  R :   Y  C  Y  Y  C  L  Q  T  R  C  S  A  S  S  S  F  R  C  P  R  C  G  E  P  V  A  A  M  Q  R  H  G  G  L  V  S  N  I  P  Q  K  Q  *  L  F  C  K  V  I  E  M  I  K  K  R  E  A  K  L  N  Y  R  S  K  V  A  Q  K  T  T  *  Q  *  N  *  V  S  R  F  L  N  K  A  Y  C  S  A  L  L  S  A  L  I  F  *  *  C  G  C  P  F  S  C  I  L  H  L  I  C  L  F  N  *  K  I  I  F  S   : N  *  K  K  *  D  </first_frame>
            <second_frame>  L  A  R  V  Y  N  Q  S  D  L  E  G  L  S  W  K  I  S  F  V  L  L  C  V  *  S  A  K  V  D  S  L  M  Q  F  H  F  F  F  L  A  S  T  A  I  I  S  V  V  V  L  F  P  F  P  C  F  L  *  *  G  L  D  *  R  D  Q  D  L  L  L  L  K  R  Y  G  T  V  L  Q  Q  L  V  V  N  I  Y  G  L  V  Y  N  H  F  L  L  F  G  D  G  V  T  L  S  R :   G  P  W  H  V  E  C  G  C  *  C  N  G  W  R  V  S  I  K  Q  H  L  L  A  I  Y  F  S  F  F  T  Q  E   : G  S  G  I  S  L  K  E  L  *  E  L  D  L  F  M  G  A  Q  I  *  T  E  L  *  A  L  S  T  *  I  V  S  W  S  G  M  N  S  R :   N  C  C  S  C  F  F  P  F  S  I  Q  H  L  S  R  V  S  F  V  H  S  Q  R  T  N  L  Q  I  L  Q  *  M  K  L  Y  A  P  S  A  R  E  P  H  Q  F  H  L  *  L  S  L  V  S  I   : G  T  V  T  T  V  F  K  Q  G  A  L  H  L  H  R  F  V  A  P  D  V  V  N  Q  L  L  L  C  N  G  M  V  V  *  S  A  T  F  L  R  N  N  D  C  S  A  K  *  L  K  *  *  K  K  G  K  L  S  *  T  I  D  Q  K  L  L  K  R  Q  L  D  N  E  T  R  Y  L  D  S  L  I  K  L  I  V  L  L  Y  *  V  L  *  F  F  N  S  V  V  V  P  F  P  V  F  Y  I  S  F  V  Y  L  I  E  R  *  F  S  Q  :  T  K  K  N  R  I </second_frame>
            <third_frame>   *  Q  G  C  I  I  N  L  I  W  K  D  C  L  G  K  S  P  L  S  Y  F  V  F  E  V  L  R  L  T  A  *  C  S  F  I  F  S  F  L  H  Q  L  L  *  F  Q  L  *  F  C  F  L  F  H  V  F  Y  S  E  D  W  I  R  G  T  R  T  Y  C  C  S  K  D  M  V  L  C  C  N  S  W  W  S  I  Y  M  G  S  S  T  I  I  F  C  F  S  E  M  G  *  L  *  A   : E  V  L  G  T  W  S  V  V  V  N  A  T  D  G  G  Y  L  *  S  S  I  F  *  Q  F  T  S  L  S  L  H  R  K  :  V  Q  E  S  H  *  K  S  F  K  S  *  T  C  L  W  E  P  K  Y  E  Q  S  C  E  L  *  V  H  E  S  S  V  G  L  E  *  I  L   : G  T  A  A  L  A  S  S  P  S  Q  F  S  I  C  Q  E  F  P  S  S  I  L  K  G  Q  I  F  R  F  F  S  R  *  N  F  M  P  H  L  P  G  N  P  I  N  S  I  C  S  Y  P  L  S  A  *  :  V  L  L  L  L  S  S  N  K  V  L  C  I  F  I  V  S  L  P  Q  M  W  *  T  S  C  C  Y  A  T  A  W  W  F  S  Q  Q  H  S  S  E  T  M  I  V  L  Q  S  D  *  N  D  K  K  K  G  S  *  V  K  L  *  I  K  S  C  S  K  D  N  L  T  M  K  L  G  I  *  I  P  *  *  S  L  L  F  C  F  I  E  C  F  N  F  L  I  V  W  L  S  L  F  L  Y  F  T  S  H  L  F  I  *  L  K  D  N  F  L  K :   L  K  K  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14983" stop="15207"/>
                    <exon start="16989" stop="17089"/>
                    <exon start="17889" stop="18006"/>
                    <exon start="18278" stop="18444"/>
                    <exon start="18999" stop="19128"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLDAVSFFLSCINCYNFSCSSVSFSMFFIVRTGLEGPGLTVAQKIWYCVATVGGQYIWARLQSFSAFRRWGDSEQRSLARGVWLLMQRMEGIYKAASFSNLLLFLYTGRFRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSELLLLLLPLLNSASVKSFLRPFSKDKSSDSSVDETLCPICQGTPSIPFVAIPCQHRYCYYCLQTRCSASSSFRCPRCGEPVAAMQRHGGLVSNIPQKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="12760" e_stop="13050"/>
            <exon e_start="13856" e_stop="13965"/>
            <exon e_start="14072" e_stop="14225"/>
            <exon e_start="15071" e_stop="15112"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.178" e_score="0.993"/>
          <exon-intron don_prob="0.994" acc_prob="0.964" e_score="0.973"/>
          <exon-intron don_prob="0.983" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="12760" e_stop="13050" e_length="291"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.178">
            <gDNA_intron_boundary i_start="13051" i_stop="13855" i_length="805"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="13856" e_stop="13965" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.964">
            <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14072" e_stop="14225" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14226" i_stop="15070" i_length="845"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15071" e_stop="15112" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12760" stop="13050"/>
              <exon start="13856" stop="13965"/>
              <exon start="14072" stop="14144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13888" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG : CCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG : CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG : TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAA</gDNA_template>
            <first_frame> S  N  L  S  A  W  S  S  Q  C  *  T  E  K  I  A  H  R  G  S  G  T  Q  S  P  P  A  T  T  N  F  F  I  A  Y  P  T  I  V  K  I  H  *  I  I  *  Y  G  R  D  M  D  R  Q  N  L  A  S  S  S  A  P  R  G  G  A  T  V  H  P  P  P  Q  H  D  A  W  I  N  T  Y  R  N  L  H  P  Q  W  Q  S  L  L  P  P  P  Q  Q  :  P  F  Q  Y  Q  Y  P  E  L  I  R  *  M  L  E  D  W  T  L  K  C  Q  P  C  *  K  S  S  W  L  R  S  F  L  *  *  S :   Q  E  C  Y  F  N  M  N  Q  N  L  M  L  F  L  S  F  *  S  G  D  F  L  S  G  L  I  S  L  L  L  V  M  L  S  *  I  *  D  T  E  M  N  V  Q  V  R  L  E  E  K  :  *  G  L  D  *  R  D  Q  D  L  L  L  L  K </first_frame>
            <second_frame>  Q  I  C  L  R  G  Q  V  S  A  E  L  K  R  L  L  T  G  V  P  V  R  N  R  R  R  R  P  P  I  S  S  S  H  I  P  L  *  L  K  F  I  E  L  S  S  T  A  E  I  W  T  D  K  T  *  L  H  P  P  L  P  V  V  V  R  L  S  I  L  P  H  N  T  M  L  G  S  I  L  T  G  I  C  I  L  N  G  N  L  F  F  L  H  R  N  S :   H  S  N  I  N  I  Q  S  *  S  G  R  C  W  K  T  G  H  *  N  V  S  H  A  K  R  A  V  G  *  G  L  F  F  D  E   : A  R  N  V  I  S  I  *  T  R  T  *  C  F  S  *  V  S  N  L  A  I  F  Y  L  G  *  *  A  Y  S  W  *  C  S  H  E  S  E  I  Q  R  *  T  C  K  *  D  *  R  K  S :   E  D  W  I  R  G  T  R  T  Y  C  C  S   </second_frame>
            <third_frame>   K  F  V  C  V  V  K  S  V  L  N  *  K  D  C  S  P  G  F  R  Y  A  I  A  A  G  D  H  Q  F  L  H  R  I  S  H  Y  S  *  N  S  L  N  Y  L  V  R  P  R  Y  G  Q  T  K  P  S  F  I  L  R  S  P  W  W  C  D  C  P  S  S  P  T  T  R  C  L  D  Q  Y  L  P  E  F  A  S  S  M  A  I  S  S  S  S  T  A  T   : A  I  P  I  S  I  S  R  V  N  Q  V  D  A  G  R  L  D  I  E  M  S  A  M  L  K  E  Q  L  V  K  V  F  S  L  M  K  :  P  G  M  L  F  Q  Y  E  P  E  L  D  A  F  L  E  F  L  I  W  R  F  S  I  W  V  D  K  P  T  P  G  N  A  L  M  N  L  R  Y  R  D  E  R  A  S  E  I  R  G  K   : V  R  T  G  L  E  G  P  G  L  T  V  A  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12879" stop="13050"/>
                    <exon start="13856" stop="13965"/>
                    <exon start="14072" stop="14225"/>
                    <exon start="15071" stop="15111"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLNYLVRPRYGQTKPSFILRSPWWCDCPSSPTTRCLDQYLPEFASSMAISSSSTATAIPISISRVNQVDAGRLDIEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERASEIRGKVRTGLEGPGLTVAQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="22916" PGL_stop="27401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22916" e_stop="23177"/>
            <exon e_start="23548" e_stop="23929"/>
            <exon e_start="24220" e_stop="24294"/>
            <exon e_start="24664" e_stop="24729"/>
            <exon e_start="25303" e_stop="25368"/>
            <exon e_start="25863" e_stop="25931"/>
            <exon e_start="26654" e_stop="26698"/>
            <exon e_start="26919" e_stop="27375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.937" e_score="0.956"/>
          <exon-only e_score="0.897"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22916" e_stop="23177" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.983">
            <gDNA_intron_boundary i_start="23178" i_stop="23547" i_length="370"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23548" e_stop="23929" e_length="382"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23930" i_stop="24219" i_length="290"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="24220" e_stop="24294" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24295" i_stop="24663" i_length="369"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24664" e_stop="24729" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24730" i_stop="25302" i_length="573"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25303" e_stop="25368" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25369" i_stop="25862" i_length="494"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="25863" e_stop="25931" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.886">
            <gDNA_intron_boundary i_start="25932" i_stop="26653" i_length="722"/>
          </intron>
          <exon e_serial="7" e_score="0.956">
            <gDNA_exon_boundary e_start="26654" e_stop="26698" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.937">
            <gDNA_intron_boundary i_start="26699" i_stop="26918" i_length="220"/>
          </intron>
          <exon e_serial="8" e_score="0.897">
            <gDNA_exon_boundary e_start="26919" e_stop="27375" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22916" stop="23177"/>
              <exon start="23548" stop="23802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23716" stop="23929"/>
              <exon start="24220" stop="24294"/>
              <exon start="24664" stop="24729"/>
              <exon start="25303" stop="25368"/>
              <exon start="25863" stop="25931"/>
              <exon start="26654" stop="26698"/>
              <exon start="26919" stop="27118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24239" stop="24294"/>
              <exon start="24664" stop="24729"/>
              <exon start="25303" stop="25368"/>
              <exon start="25863" stop="25931"/>
              <exon start="26654" stop="26698"/>
              <exon start="26919" stop="27329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24244" stop="24294"/>
              <exon start="24664" stop="24729"/>
              <exon start="25303" stop="25368"/>
              <exon start="25863" stop="25931"/>
              <exon start="26654" stop="26698"/>
              <exon start="26919" stop="27375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432014" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGATACAGGAGAAGAAAGATTGCAAAATTTGTGTTGAGAGAAGAGGGTGAAGAATAATCATTAGTCGAGTAGCAAATGATGGCTGGAAACCCTACTAATTGGTGGAGCATGATCATGAATGGAAACATGCATCCACAATTATCTCATGATCATGATCAACATAATTCTTCTTCTTCTAATTCTAATTCTAATTCTTCACATTTTTATGGAGCTCATAATCCAAATCAAGATTTTCCTCGTTCATTGAGCCAACTTCTTAT : GAATGGATTTTGTGGTGATGAAGAAAAGTTTGGTATTAGTCCTTTTCATGCCGCCGGGAATTCGGAAGACCAAAGTTTGAATTCCGTCCATCCAACATCATCAACAGCTAATTTTAGGGTTCCTGTTGCTGATGTAAAGCCAGAATTGTATCATCATCATCATGGCCACAACGAATTTCAAACATCTTCATCGCTACAAGAAAAACTCGAATTAGATACTGATCATTTTACCAGGCCTTTAATTGCTTCTAATTGGTCTCAACAAGATTTGTCTTCACCAGCTAGCTCTTGTATTACAACTGGGTTAAGTCACAACCTTTTGAATTTCTCTAACAACAAAGGGGAACATAAGCATCAACATCCAGATCATAATTCAACTGAG : TGTAACAGCACAAGCAGTGGTGGGATTAGCAAGAAGGCTAGGGTTCAACAATCTTCAGCTCAACCATCTCTAAAG : GTAAGAAAGGAGAAGCTAGGAGATAGAGTAACATCACTCCACCAACTTGTTTCTCCATTTGGAAAG : ACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAG : GCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAAT : TTTTTGGATGGTAATTTTCTGAAAAGGAGACCAGCAAATAAGCAG : GATTCTCAGCACAAACCGATGGATTTAAGGAGTAGAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGATACCGGCGCCGATTATTGGGCTCCAGCTCTCGGAGGAGGATTTTGATGTTACGAGCTGATTGGATTTTAAGTTATATACACTGACAGTGTAAAAATACTGAGACGACAACAAACTGATGATAAGACGTATCGGAGCCTCTGTGTCCTCATGGAATGAATGATATAACATCACAAAGCAGTCATTCTCAGTATGAAAGTCAGAGCTGACTGTTTGTGATGCTATTTTGCATTTGAAATCGGGTCAATGATAAAGTGGTATTTTCCAATGTACAATATGGTCCTATTTTCTTGAATTTCATGAATAATCTTACTACCTTACAAGGTAGTTCATAACTGTTGTATATGTAACTTGGAAATCCATAGGTACAATCAAC</gDNA_template>
            <first_frame> R  D  T  G  E  E  R  L  Q  N  L  C  *  E  K  R  V  K  N  N  H  *  S  S  S  K  *  W  L  E  T  L  L  I  G  G  A  *  S  *  M  E  T  C  I  H  N  Y  L  M  I  M  I  N  I  I  L  L  L  L  I  L  I  L  I  L  H  I  F  M  E  L  I  I  Q  I  K  I  F  L  V  H  *  A  N  F  L   : *  M  D  F  V  V  M  K  K  S  L  V  L  V  L  F  M  P  P  G  I  R  K  T  K  V  *  I  P  S  I  Q  H  H  Q  Q  L  I  L  G  F  L  L  L  M  *  S  Q  N  C  I  I  I  I  M  A  T  T  N  F  K  H  L  H  R  Y  K  K  N  S  N  *  I  L  I  I  L  P  G  L  *  L  L  L  I  G  L  N  K  I  C  L  H  Q  L  A  L  V  L  Q  L  G  *  V  T  T  F  *  I  S  L  T  T  K  G  N  I  S  I  N  I  Q  I  I  I  Q  L  S :   V  T  A  Q  A  V  V  G  L  A  R  R  L  G  F  N  N  L  Q  L  N  H  L  *  R :   *  E  R  R  S  *  E  I  E  *  H  H  S  T  N  L  F  L  H  L  E  R :   L  I  Q  P  P  S  Y  Q  K  L  L  A  T  S  D  S  F  R  L  K  F  R :   H  *  A  H  H  T  W  A  M  H  Q  E  A  W  V  T  F  P  N  N  H  *  I :   F  W  M  V  I  F  *  K  G  D  Q  Q  I  S  R :   I  L  S  T  N  R  W  I  *  G  V  E  G  C  A  W  F  L  F  L  A  W  Q  I  *  E  V  I  P  A  P  I  I  G  L  Q  L  S  E  E  D  F  D  V  T  S  *  L  D  F  K  L  Y  T  L  T  V  *  K  Y  *  D  D  N  K  L  M  I  R  R  I  G  A  S  V  S  S  W  N  E  *  Y  N  I  T  K  Q  S  F  S  V  *  K  S  E  L  T  V  C  D  A  I  L  H  L  K  S  G  Q  *  *  S  G  I  F  Q  C  T  I  W  S  Y  F  L  E  F  H  E  *  S  Y  Y  L  T  R  *  F  I  T  V  V  Y  V  T  W  K  S  I  G  T  I  N </first_frame>
            <second_frame>  E  I  Q  E  K  K  D  C  K  I  C  V  E  R  R  G  *  R  I  I  I  S  R  V  A  N  D  G  W  K  P  Y  *  L  V  E  H  D  H  E  W  K  H  A  S  T  I  I  S  *  S  *  S  T  *  F  F  F  F  *  F  *  F  *  F  F  T  F  L  W  S  S  *  S  K  S  R  F  S  S  F  I  E  P  T  S  Y  :  E  W  I  L  W  *  *  R  K  V  W  Y  *  S  F  S  C  R  R  E  F  G  R  P  K  F  E  F  R  P  S  N  I  I  N  S  *  F  *  G  S  C  C  *  C  K  A  R  I  V  S  S  S  S  W  P  Q  R  I  S  N  I  F  I  A  T  R  K  T  R  I  R  Y  *  S  F  Y  Q  A  F  N  C  F  *  L  V  S  T  R  F  V  F  T  S  *  L  L  Y  Y  N  W  V  K  S  Q  P  F  E  F  L  *  Q  Q  R  G  T  *  A  S  T  S  R  S  *  F  N  *   : V  *  Q  H  K  Q  W  W  D  *  Q  E  G  *  G  S  T  I  F  S  S  T  I  S  K   : G  K  K  G  E  A  R  R  *  S  N  I  T  P  P  T  C  F  S  I  W  K   : D  *  Y  S  L  R  P  I  R  S  Y  W  L  H  Q  I  P  S  G  S  N  S   : G  I  K  L  T  I  L  G  Q  C  I  R  K  H  G  S  H  S  P  T  I  T  E   : F  F  G  W  *  F  S  E  K  E  T  S  K  *  A   : G  F  S  A  Q  T  D  G  F  K  E  *  R  V  V  L  G  S  Y  F  L  H  G  K  Y  R  K  *  Y  R  R  R  L  L  G  S  S  S  R  R  R  I  L  M  L  R  A  D  W  I  L  S  Y  I  H  *  Q  C  K  N  T  E  T  T  T  N  *  *  *  D  V  S  E  P  L  C  P  H  G  M  N  D  I  T  S  Q  S  S  H  S  Q  Y  E  S  Q  S  *  L  F  V  M  L  F  C  I  *  N  R  V  N  D  K  V  V  F  S  N  V  Q  Y  G  P  I  F  L  N  F  M  N  N  L  T  T  L  Q  G  S  S  *  L  L  Y  M  *  L  G  N  P  *  V  Q  S   </second_frame>
            <third_frame>   R  Y  R  R  R  K  I  A  K  F  V  L  R  E  E  G  E  E  *  S  L  V  E  *  Q  M  M  A  G  N  P  T  N  W  W  S  M  I  M  N  G  N  M  H  P  Q  L  S  H  D  H  D  Q  H  N  S  S  S  S  N  S  N  S  N  S  S  H  F  Y  G  A  H  N  P  N  Q  D  F  P  R  S  L  S  Q  L  L  M :   N  G  F  C  G  D  E  E  K  F  G  I  S  P  F  H  A  A  G  N  S  E  D  Q  S  L  N  S  V  H  P  T  S  S  T  A  N  F  R  V  P  V  A  D  V  K  P  E  L  Y  H  H  H  H  G  H  N  E  F  Q  T  S  S  S  L  Q  E  K  L  E  L  D  T  D  H  F  T  R  P  L  I  A  S  N  W  S  Q  Q  D  L  S  S  P  A  S  S  C  I  T  T  G  L  S  H  N  L  L  N  F  S  N  N  K  G  E  H  K  H  Q  H  P  D  H  N  S  T  E  :  C  N  S  T  S  S  G  G  I  S  K  K  A  R  V  Q  Q  S  S  A  Q  P  S  L  K  :  V  R  K  E  K  L  G  D  R  V  T  S  L  H  Q  L  V  S  P  F  G  K  :  T  D  T  A  S  V  L  S  E  A  I  G  Y  I  R  F  L  Q  A  Q  I  Q  :  A  L  S  S  P  Y  L  G  N  A  S  G  S  M  G  H  I  P  Q  Q  S  L  N  :  F  L  D  G  N  F  L  K  R  R  P  A  N  K  Q  :  D  S  Q  H  K  P  M  D  L  R  S  R  G  L  C  L  V  P  I  S  C  M  A  N  I  G  S  D  T  G  A  D  Y  W  A  P  A  L  G  G  G  F  *  C  Y  E  L  I  G  F  *  V  I  Y  T  D  S  V  K  I  L  R  R  Q  Q  T  D  D  K  T  Y  R  S  L  C  V  L  M  E  *  M  I  *  H  H  K  A  V  I  L  S  M  K  V  R  A  D  C  L  *  C  Y  F  A  F  E  I  G  S  M  I  K  W  Y  F  P  M  Y  N  M  V  L  F  S  *  I  S  *  I  I  L  L  P  Y  K  V  V  H  N  C  C  I  C  N  L  E  I  H  R  Y  N  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22990" stop="23177"/>
                    <exon start="23548" stop="23929"/>
                    <exon start="24220" stop="24294"/>
                    <exon start="24664" stop="24729"/>
                    <exon start="25303" stop="25368"/>
                    <exon start="25863" stop="25931"/>
                    <exon start="26654" stop="26698"/>
                    <exon start="26919" stop="27047"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMMAGNPTNWWSMIMNGNMHPQLSHDHDQHNSSSSNSNSNSSHFYGAHNPNQDFPRSLSQLLMNGFCGDEEKFGISPFHAAGNSEDQSLNSVHPTSSTANFRVPVADVKPELYHHHHGHNEFQTSSSLQEKLELDTDHFTRPLIASNWSQQDLSSPASSCITTGLSHNLLNFSNNKGEHKHQHPDHNSTECNSTSSGGISKKARVQQSSAQPSLKVRKEKLGDRVTSLHQLVSPFGKTDTASVLSEAIGYIRFLQAQIQALSSPYLGNASGSMGHIPQQSLNFLDGNFLKRRPANKQDSQHKPMDLRSRGLCLVPISCMANIGSDTGADYWAPALGGGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23886" e_stop="23929"/>
            <exon e_start="24220" e_stop="24294"/>
            <exon e_start="24664" e_stop="24729"/>
            <exon e_start="25303" e_stop="25368"/>
            <exon e_start="25863" e_stop="25931"/>
            <exon e_start="26919" e_stop="27401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="0.909"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.987"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="23886" e_stop="23929" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23930" i_stop="24219" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="24220" e_stop="24294" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24295" i_stop="24663" i_length="369"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24664" e_stop="24729" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24730" i_stop="25302" i_length="573"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25303" e_stop="25368" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25369" i_stop="25862" i_length="494"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25863" e_stop="25931" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.937">
            <gDNA_intron_boundary i_start="25932" i_stop="26918" i_length="987"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="26919" e_stop="27401" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23886" stop="23929"/>
              <exon start="24220" stop="24294"/>
              <exon start="24664" stop="24729"/>
              <exon start="25303" stop="25368"/>
              <exon start="25863" stop="25931"/>
              <exon start="26919" stop="27401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602780" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25303" stop="25368"/>
              <exon start="25863" stop="25931"/>
              <exon start="26919" stop="27396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398712" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGGGAACATAAGCATCAACATCCAGATCATAATTCAACTGAG : TGTAACAGCACAAGCAGTGGTGGGATTAGCAAGAAGGCTAGGGTTCAACAATCTTCAGCTCAACCATCTCTAAAG : GTAAGAAAGGAGAAGCTAGGAGATAGAGTAACATCACTCCACCAACTTGTTTCTCCATTTGGAAAG : ACTGATACAGCCTCCGTCCTATCAGAAGCTATTGGCTACATCAGATTCCTTCAGGCTCAAATTCAG : GCATTAAGCTCACCATACTTGGGCAATGCATCAGGAAGCATGGGTCACATTCCCCAACAATCACTGAAT : GATTCTCAGCACAAACCGATGGATTTAAGGAGTAGAGGGTTGTGCTTGGTTCCTATTTCTTGCATGGCAAATATAGGAAGTGATACCGGCGCCGATTATTGGGCTCCAGCTCTCGGAGGAGGATTTTGATGTTACGAGCTGATTGGATTTTAAGTTATATACACTGACAGTGTAAAAATACTGAGACGACAACAAACTGATGATAAGACGTATCGGAGCCTCTGTGTCCTCATGGAATGAATGATATAACATCACAAAGCAGTCATTCTCAGTATGAAAGTCAGAGCTGACTGTTTGTGATGCTATTTTGCATTTGAAATCGGGTCAATGATAAAGTGGTATTTTCCAATGTACAATATGGTCCTATTTTCTTGAATTTCATGAATAATCTTACTACCTTACAAGGTAGTTCATAACTGTTGTATATGTAACTTGGAAATCCATAGGTACAATCAACATATCGTTTCGAAAATTTTATCTTTC</gDNA_template>
            <first_frame> K  G  N  I  S  I  N  I  Q  I  I  I  Q  L  S :   V  T  A  Q  A  V  V  G  L  A  R  R  L  G  F  N  N  L  Q  L  N  H  L  *  R :   *  E  R  R  S  *  E  I  E  *  H  H  S  T  N  L  F  L  H  L  E  R :   L  I  Q  P  P  S  Y  Q  K  L  L  A  T  S  D  S  F  R  L  K  F  R :   H  *  A  H  H  T  W  A  M  H  Q  E  A  W  V  T  F  P  N  N  H  *  M :   I  L  S  T  N  R  W  I  *  G  V  E  G  C  A  W  F  L  F  L  A  W  Q  I  *  E  V  I  P  A  P  I  I  G  L  Q  L  S  E  E  D  F  D  V  T  S  *  L  D  F  K  L  Y  T  L  T  V  *  K  Y  *  D  D  N  K  L  M  I  R  R  I  G  A  S  V  S  S  W  N  E  *  Y  N  I  T  K  Q  S  F  S  V  *  K  S  E  L  T  V  C  D  A  I  L  H  L  K  S  G  Q  *  *  S  G  I  F  Q  C  T  I  W  S  Y  F  L  E  F  H  E  *  S  Y  Y  L  T  R  *  F  I  T  V  V  Y  V  T  W  K  S  I  G  T  I  N  I  S  F  R  K  F  Y  L   </first_frame>
            <second_frame>  R  G  T  *  A  S  T  S  R  S  *  F  N  *   : V  *  Q  H  K  Q  W  W  D  *  Q  E  G  *  G  S  T  I  F  S  S  T  I  S  K   : G  K  K  G  E  A  R  R  *  S  N  I  T  P  P  T  C  F  S  I  W  K   : D  *  Y  S  L  R  P  I  R  S  Y  W  L  H  Q  I  P  S  G  S  N  S   : G  I  K  L  T  I  L  G  Q  C  I  R  K  H  G  S  H  S  P  T  I  T  E   : *  F  S  A  Q  T  D  G  F  K  E  *  R  V  V  L  G  S  Y  F  L  H  G  K  Y  R  K  *  Y  R  R  R  L  L  G  S  S  S  R  R  R  I  L  M  L  R  A  D  W  I  L  S  Y  I  H  *  Q  C  K  N  T  E  T  T  T  N  *  *  *  D  V  S  E  P  L  C  P  H  G  M  N  D  I  T  S  Q  S  S  H  S  Q  Y  E  S  Q  S  *  L  F  V  M  L  F  C  I  *  N  R  V  N  D  K  V  V  F  S  N  V  Q  Y  G  P  I  F  L  N  F  M  N  N  L  T  T  L  Q  G  S  S  *  L  L  Y  M  *  L  G  N  P  *  V  Q  S  T  Y  R  F  E  N  F  I  F  </second_frame>
            <third_frame>   G  E  H  K  H  Q  H  P  D  H  N  S  T  E  :  C  N  S  T  S  S  G  G  I  S  K  K  A  R  V  Q  Q  S  S  A  Q  P  S  L  K  :  V  R  K  E  K  L  G  D  R  V  T  S  L  H  Q  L  V  S  P  F  G  K  :  T  D  T  A  S  V  L  S  E  A  I  G  Y  I  R  F  L  Q  A  Q  I  Q  :  A  L  S  S  P  Y  L  G  N  A  S  G  S  M  G  H  I  P  Q  Q  S  L  N  :  D  S  Q  H  K  P  M  D  L  R  S  R  G  L  C  L  V  P  I  S  C  M  A  N  I  G  S  D  T  G  A  D  Y  W  A  P  A  L  G  G  G  F  *  C  Y  E  L  I  G  F  *  V  I  Y  T  D  S  V  K  I  L  R  R  Q  Q  T  D  D  K  T  Y  R  S  L  C  V  L  M  E  *  M  I  *  H  H  K  A  V  I  L  S  M  K  V  R  A  D  C  L  *  C  Y  F  A  F  E  I  G  S  M  I  K  W  Y  F  P  M  Y  N  M  V  L  F  S  *  I  S  *  I  I  L  L  P  Y  K  V  V  H  N  C  C  I  C  N  L  E  I  H  R  Y  N  Q  H  I  V  S  K  I  L  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23888" stop="23929"/>
                    <exon start="24220" stop="24294"/>
                    <exon start="24664" stop="24729"/>
                    <exon start="25303" stop="25368"/>
                    <exon start="25863" stop="25931"/>
                    <exon start="26919" stop="27047"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEHKHQHPDHNSTECNSTSSGGISKKARVQQSSAQPSLKVRKEKLGDRVTSLHQLVSPFGKTDTASVLSEAIGYIRFLQAQIQALSSPYLGNASGSMGHIPQQSLNDSQHKPMDLRSRGLCLVPISCMANIGSDTGADYWAPALGGGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="38076" PGL_stop="31018"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38076" e_stop="37876"/>
            <exon e_start="37447" e_stop="37376"/>
            <exon e_start="37265" e_stop="37053"/>
            <exon e_start="31457" e_stop="31198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.894" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.610" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38076" e_stop="37876" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.894" acc_prob="0.993">
            <gDNA_intron_boundary i_start="37875" i_stop="37448" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37447" e_stop="37376" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.610" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37375" i_stop="37266" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37265" e_stop="37053" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37052" i_stop="31458" i_length="5595"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="31457" e_stop="31198" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38076" stop="37876"/>
              <exon start="37447" stop="37376"/>
              <exon start="37265" stop="37053"/>
              <exon start="31457" stop="31419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38075" stop="37876"/>
              <exon start="37447" stop="37376"/>
              <exon start="37265" stop="37053"/>
              <exon start="31457" stop="31198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38075" stop="37876"/>
              <exon start="37447" stop="37411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38074" stop="37876"/>
              <exon start="37447" stop="37376"/>
              <exon start="37265" stop="37053"/>
              <exon start="31457" stop="31323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38071" stop="37876"/>
              <exon start="37447" stop="37376"/>
              <exon start="37265" stop="37053"/>
              <exon start="31457" stop="31199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373226" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38070" stop="37876"/>
              <exon start="37447" stop="37376"/>
              <exon start="37265" stop="37067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38070" stop="37876"/>
              <exon start="37447" stop="37376"/>
              <exon start="37265" stop="37178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38065" stop="37876"/>
              <exon start="37447" stop="37376"/>
              <exon start="37265" stop="37145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400743" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATG : CTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA : CATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAG : GGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATAAACAATGCCT</gDNA_template>
            <first_frame> I  L  F  G  *  Q  W  E  E  L  K  Q  T  M  K  E  K  H  L  R  Q  R  V  V  L  N  Q  L  P  H  S  L  N  S  S  K  E  Y  K  V  C  I  S  H  H  H  T  *  Q  L  E  L  L  G  V  L  A  Y  L  I  V  I  W  T  K  L  M  :  L  S  *  R  R  S  Y  L  V  *  H  L  D  K  *  Q  K  S  L  M  Q  D  K  *  :  H  A  L  W  G  L  S  Y  T  C  *  *  C  L  L  S  A  L  S  G  S  W  A  Q  N  I  E  P  N  *  D  K  D  I  I  *  W  K  L  L  I  Q  T  *  F  P  I  C  S  V  H  V  A  L  F  V  K  N  S  E  S  F  E  T  G  D  L  I  P  L  *  :  G  G  M  V  *  L  L  S  D  T  M  G  T  N  K  *  I  K  L  L  K  Y  N  P  C  Q  C  K  N  S  R  L  *  F  F  I  C  L  I  *  G  C  G  V  L  V  K  T  R  F  C  S  C  L  K  L  Y  P  *  N  S  T  I  L  L  A  V  L  V  V  *  T  M  F  L  Q  P  Q  F  E  L  D  Y  K  Q  C   </first_frame>
            <second_frame>  Y  Y  L  D  N  N  G  K  S  *  S  K  Q  *  R  R  N  I  S  G  R  E  W  Y  *  T  S  C  L  T  A  S  T  V  P  R  S  T  K  C  V  S  V  T  I  T  L  N  N  W  S  S  L  E  Y  W  L  I  *  L  S  S  G  P  N  *  C :   C  H  D  G  V  L  T  L  C  N  I  W  T  N  S  R  S  P  *  C  R  T  N  D :   M  P  F  G  D  F  H  I  H  A  D  D  A  C  C  L  L  S  V  D  H  G  L  K  I  *  N  P  I  E  T  K  I  *  S  S  G  S  S  L  F  R  H  D  F  P  Y  V  L  S  M  L  L  S  L  S  R  I  Q  R  A  S  K  Q  G  T  *  S  R  S  R :   V  E  W  Y  S  C  S  A  T  L  W  E  P  T  S  E  S  S  S  S  S  T  I  H  V  N  V  K  I  Q  D  C  D  S  L  F  V  *  F  E  V  V  V  C  *  *  K  P  D  S  V  H  V  *  S  C  I  L  K  T  Q  P  Y  C  W  L  C  *  L  F  E  L  C  F  Y  N  P  N  S  S  *  I  I  N  N  A  </second_frame>
            <third_frame>   T  I  W  I  T  M  G  R  V  E  A  N  N  E  G  E  T  S  Q  A  E  S  G  T  E  P  A  A  S  Q  P  Q  Q  F  Q  G  V  Q  S  V  Y  Q  S  P  S  H  L  T  I  G  A  P  W  S  T  G  L  F  D  C  H  L  D  Q  T  N   : A  V  M  T  A  F  L  P  C  V  T  F  G  Q  I  A  E  V  L  D  A  G  Q  M   : T  C  P  L  G  T  F  I  Y  M  L  M  M  P  A  V  C  S  Q  W  I  M  G  S  K  Y  R  T  Q  L  R  Q  R  Y  N  L  V  E  A  P  Y  S  D  M  I  S  H  M  F  C  P  C  C  S  L  C  Q  E  F  R  E  L  R  N  R  G  L  D  P  A  L   : G  W  N  G  I  V  A  Q  R  H  Y  G  N  Q  Q  V  N  Q  A  P  Q  V  Q  S  M  S  M  *  K  F  K  I  V  I  L  Y  L  F  D  L  R  L  W  C  V  S  K  N  Q  I  L  F  M  F  E  V  V  S  L  K  L  N  H  I  V  G  C  V  S  C  L  N  Y  V  F  T  T  P  I  R  V  R  L  *  T  M  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38074" stop="37876"/>
                    <exon start="37447" stop="37376"/>
                    <exon start="37265" stop="37053"/>
                    <exon start="31457" stop="31375"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIWITMGRVEANNEGETSQAESGTEPAASQPQQFQGVQSVYQSPSHLTIGAPWSTGLFDCHLDQTNAVMTAFLPCVTFGQIAEVLDAGQMTCPLGTFIYMLMMPAVCSQWIMGSKYRTQLRQRYNLVEAPYSDMISHMFCPCCSLCQEFRELRNRGLDPALGWNGIVAQRHYGNQQVNQAPQVQSMSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38076" e_stop="37876"/>
            <exon e_start="37447" e_stop="37376"/>
            <exon e_start="37265" e_stop="37053"/>
            <exon e_start="31457" e_stop="31219"/>
            <exon e_start="31045" e_stop="31018"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.894" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.610" acc_prob="0.996" e_score="0.986"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.874" e_score="0.967"/>
          <exon-only e_score="0.536"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38076" e_stop="37876" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.894" acc_prob="0.993">
            <gDNA_intron_boundary i_start="37875" i_stop="37448" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="37447" e_stop="37376" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.610" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37375" i_stop="37266" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="37265" e_stop="37053" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37052" i_stop="31458" i_length="5595"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="31457" e_stop="31219" e_length="239"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="31218" i_stop="31046" i_length="173"/>
          </intron>
          <exon e_serial="5" e_score="0.536">
            <gDNA_exon_boundary e_start="31045" e_stop="31018" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38076" stop="37876"/>
              <exon start="37447" stop="37376"/>
              <exon start="37265" stop="37053"/>
              <exon start="31457" stop="31419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38075" stop="37876"/>
              <exon start="37447" stop="37411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38074" stop="37876"/>
              <exon start="37447" stop="37376"/>
              <exon start="37265" stop="37053"/>
              <exon start="31457" stop="31323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38070" stop="37876"/>
              <exon start="37447" stop="37376"/>
              <exon start="37265" stop="37067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38070" stop="37876"/>
              <exon start="37447" stop="37376"/>
              <exon start="37265" stop="37178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38065" stop="37876"/>
              <exon start="37447" stop="37376"/>
              <exon start="37265" stop="37145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37185" stop="37053"/>
              <exon start="31457" stop="31219"/>
              <exon start="31045" stop="31018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372470" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATG : CTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA : CATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAG : GGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGA : GAAGCATTAAAACCAAACCATCAAGAAC</gDNA_template>
            <first_frame> I  L  F  G  *  Q  W  E  E  L  K  Q  T  M  K  E  K  H  L  R  Q  R  V  V  L  N  Q  L  P  H  S  L  N  S  S  K  E  Y  K  V  C  I  S  H  H  H  T  *  Q  L  E  L  L  G  V  L  A  Y  L  I  V  I  W  T  K  L  M  :  L  S  *  R  R  S  Y  L  V  *  H  L  D  K  *  Q  K  S  L  M  Q  D  K  *  :  H  A  L  W  G  L  S  Y  T  C  *  *  C  L  L  S  A  L  S  G  S  W  A  Q  N  I  E  P  N  *  D  K  D  I  I  *  W  K  L  L  I  Q  T  *  F  P  I  C  S  V  H  V  A  L  F  V  K  N  S  E  S  F  E  T  G  D  L  I  P  L  *  :  G  G  M  V  *  L  L  S  D  T  M  G  T  N  K  *  I  K  L  L  K  Y  N  P  C  Q  C  K  N  S  R  L  *  F  F  I  C  L  I  *  G  C  G  V  L  V  K  T  R  F  C  S  C  L  K  L  Y  P  *  N  S  T  I  L  L  A  V  L  V  V  *  T  M  F  L  Q  P  Q  F  E :   K  H  *  N  Q  T  I  K  N </first_frame>
            <second_frame>  Y  Y  L  D  N  N  G  K  S  *  S  K  Q  *  R  R  N  I  S  G  R  E  W  Y  *  T  S  C  L  T  A  S  T  V  P  R  S  T  K  C  V  S  V  T  I  T  L  N  N  W  S  S  L  E  Y  W  L  I  *  L  S  S  G  P  N  *  C :   C  H  D  G  V  L  T  L  C  N  I  W  T  N  S  R  S  P  *  C  R  T  N  D :   M  P  F  G  D  F  H  I  H  A  D  D  A  C  C  L  L  S  V  D  H  G  L  K  I  *  N  P  I  E  T  K  I  *  S  S  G  S  S  L  F  R  H  D  F  P  Y  V  L  S  M  L  L  S  L  S  R  I  Q  R  A  S  K  Q  G  T  *  S  R  S  R :   V  E  W  Y  S  C  S  A  T  L  W  E  P  T  S  E  S  S  S  S  S  T  I  H  V  N  V  K  I  Q  D  C  D  S  L  F  V  *  F  E  V  V  V  C  *  *  K  P  D  S  V  H  V  *  S  C  I  L  K  T  Q  P  Y  C  W  L  C  *  L  F  E  L  C  F  Y  N  P  N  S   : R  S  I  K  T  K  P  S  R   </second_frame>
            <third_frame>   T  I  W  I  T  M  G  R  V  E  A  N  N  E  G  E  T  S  Q  A  E  S  G  T  E  P  A  A  S  Q  P  Q  Q  F  Q  G  V  Q  S  V  Y  Q  S  P  S  H  L  T  I  G  A  P  W  S  T  G  L  F  D  C  H  L  D  Q  T  N   : A  V  M  T  A  F  L  P  C  V  T  F  G  Q  I  A  E  V  L  D  A  G  Q  M   : T  C  P  L  G  T  F  I  Y  M  L  M  M  P  A  V  C  S  Q  W  I  M  G  S  K  Y  R  T  Q  L  R  Q  R  Y  N  L  V  E  A  P  Y  S  D  M  I  S  H  M  F  C  P  C  C  S  L  C  Q  E  F  R  E  L  R  N  R  G  L  D  P  A  L   : G  W  N  G  I  V  A  Q  R  H  Y  G  N  Q  Q  V  N  Q  A  P  Q  V  Q  S  M  S  M  *  K  F  K  I  V  I  L  Y  L  F  D  L  R  L  W  C  V  S  K  N  Q  I  L  F  M  F  E  V  V  S  L  K  L  N  H  I  V  G  C  V  S  C  L  N  Y  V  F  T  T  P  I  R  :  E  A  L  K  P  N  H  Q  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38074" stop="37876"/>
                    <exon start="37447" stop="37376"/>
                    <exon start="37265" stop="37053"/>
                    <exon start="31457" stop="31375"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIWITMGRVEANNEGETSQAESGTEPAASQPQQFQGVQSVYQSPSHLTIGAPWSTGLFDCHLDQTNAVMTAFLPCVTFGQIAEVLDAGQMTCPLGTFIYMLMMPAVCSQWIMGSKYRTQLRQRYNLVEAPYSDMISHMFCPCCSLCQEFRELRNRGLDPALGWNGIVAQRHYGNQQVNQAPQVQSMSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="38455" PGL_stop="39781"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38456" e_stop="38478"/>
            <exon e_start="39105" e_stop="39781"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.652"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.652">
            <gDNA_exon_boundary e_start="38456" e_stop="38478" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38479" i_stop="39104" i_length="626"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39105" e_stop="39781" e_length="677"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38456" stop="38478"/>
              <exon start="39105" stop="39781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39105" stop="39705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425129" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTTTTTTTGTTTGTTTGATTT : TTGAAAAATCTCAGCTAACATTAATCAATTGTATACTACAATACTACCAATATTTCTTGTTACAGCAGAGCAGCTACCAGTATCTTGCTAATTCAAAATCTGTAACATTATTTCTGTAAGGAATGTTTAGAGTAGCCTTTCCGTGTCATGCTAATTACAAAAATCAGATCAAGGTAAAAATTAAAAGAAAGGTATACAAAGATAACAACAATAGGTACTCTGTAGTACATATGTGATCTACTACTGGCCGAGGCAGATGCAGTTTCATGCTCCCTCAGGCAATAGTCACCGACCAGTGGAGTGAGCAAAAAAGCAGCAAAAATAAGCAGAGTGACAATTGCCCTATGAAAACTCGCTTTGTGACAATCTTTATCTTGATTGTTCATTGTTGCTGCCTTTCCTGCCTATGAACACACTCCGAAATTGTACAAATCAAGAAATAGCTATAGCAAAGAATTTGGATGTTCAATCACTAGGACCTTAACATTTTCCAATCTGAACTTTAGTATAGAGTGTGATCTAGTCACCAACTAATGAGATGGAAGAAGGGCAAACTCAATCTCCTGTAATGTTTTCCCTTTCGTTTCCACCACATTCTTTTTCACAAAGGCCAGTGCAAACAAGCAAAATCCTGCAAAGATCGCATAAACTATTTGTGGTCCAAGATGCTCAAGCAT</gDNA_template>
            <first_frame> P  F  F  C  L  F  D  F :   *  K  I  S  A  N  I  N  Q  L  Y  T  T  I  L  P  I  F  L  V  T  A  E  Q  L  P  V  S  C  *  F  K  I  C  N  I  I  S  V  R  N  V  *  S  S  L  S  V  S  C  *  L  Q  K  S  D  Q  G  K  N  *  K  K  G  I  Q  R  *  Q  Q  *  V  L  C  S  T  Y  V  I  Y  Y  W  P  R  Q  M  Q  F  H  A  P  S  G  N  S  H  R  P  V  E  *  A  K  K  Q  Q  K  *  A  E  *  Q  L  P  Y  E  N  S  L  C  D  N  L  Y  L  D  C  S  L  L  L  P  F  L  P  M  N  T  L  R  N  C  T  N  Q  E  I  A  I  A  K  N  L  D  V  Q  S  L  G  P  *  H  F  P  I  *  T  L  V  *  S  V  I  *  S  P  T  N  E  M  E  E  G  Q  T  Q  S  P  V  M  F  S  L  S  F  P  P  H  S  F  S  Q  R  P  V  Q  T  S  K  I  L  Q  R  S  H  K  L  F  V  V  Q  D  A  Q  A  </first_frame>
            <second_frame>  P  F  F  V  C  L  I   : F  E  K  S  Q  L  T  L  I  N  C  I  L  Q  Y  Y  Q  Y  F  L  L  Q  Q  S  S  Y  Q  Y  L  A  N  S  K  S  V  T  L  F  L  *  G  M  F  R  V  A  F  P  C  H  A  N  Y  K  N  Q  I  K  V  K  I  K  R  K  V  Y  K  D  N  N  N  R  Y  S  V  V  H  M  *  S  T  T  G  R  G  R  C  S  F  M  L  P  Q  A  I  V  T  D  Q  W  S  E  Q  K  S  S  K  N  K  Q  S  D  N  C  P  M  K  T  R  F  V  T  I  F  I  L  I  V  H  C  C  C  L  S  C  L  *  T  H  S  E  I  V  Q  I  K  K  *  L  *  Q  R  I  W  M  F  N  H  *  D  L  N  I  F  Q  S  E  L  *  Y  R  V  *  S  S  H  Q  L  M  R  W  K  K  G  K  L  N  L  L  *  C  F  P  F  R  F  H  H  I  L  F  H  K  G  Q  C  K  Q  A  K  S  C  K  D  R  I  N  Y  L  W  S  K  M  L  K  H </second_frame>
            <third_frame>   L  F  L  F  V  *  F  :  L  K  N  L  S  *  H  *  S  I  V  Y  Y  N  T  T  N  I  S  C  Y  S  R  A  A  T  S  I  L  L  I  Q  N  L  *  H  Y  F  C  K  E  C  L  E  *  P  F  R  V  M  L  I  T  K  I  R  S  R  *  K  L  K  E  R  Y  T  K  I  T  T  I  G  T  L  *  Y  I  C  D  L  L  L  A  E  A  D  A  V  S  C  S  L  R  Q  *  S  P  T  S  G  V  S  K  K  A  A  K  I  S  R  V  T  I  A  L  *  K  L  A  L  *  Q  S  L  S  *  L  F  I  V  A  A  F  P  A  Y  E  H  T  P  K  L  Y  K  S  R  N  S  Y  S  K  E  F  G  C  S  I  T  R  T  L  T  F  S  N  L  N  F  S  I  E  C  D  L  V  T  N  *  *  D  G  R  R  A  N  S  I  S  C  N  V  F  P  F  V  S  T  T  F  F  F  T  K  A  S  A  N  K  Q  N  P  A  K  I  A  *  T  I  C  G  P  R  C  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0081D06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38455" e_stop="38474"/>
            <exon e_start="39103" e_stop="39705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.700"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.700">
            <gDNA_exon_boundary e_start="38455" e_stop="38474" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38475" i_stop="39102" i_length="628"/>
          </intron>
          <exon e_serial="2" e_score="0.937">
            <gDNA_exon_boundary e_start="39103" e_stop="39705" e_length="603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38455" stop="38474"/>
              <exon start="39103" stop="39482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39105" stop="39705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425129" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCCTTTTTTTGTTTGTTTG : TATTGAAAAATCTCAGCTAACATTAATCAATTGTATACTACAATACTACCAATATTTCTTGTTACAGCAGAGCAGCTACCAGTATCTTGCTAATTCAAAATCTGTAACATTATTTCTGTAAGGAATGTTTAGAGTAGCCTTTCCGTGTCATGCTAATTACAAAAATCAGATCAAGGTAAAAATTAAAAGAAAGGTATACAAAGATAACAACAATAGGTACTCTGTAGTACATATGTGATCTACTACTGGCCGAGGCAGATGCAGTTTCATGCTCCCTCAGGCAATAGTCACCGACCAGTGGAGTGAGCAAAAAAGCAGCAAAAATAAGCAGAGTGACAATTGCCCTATGAAAACTCGCTTTGTGACAATCTTTATCTTGATTGTTCATTGTTGCTGCCTTTCCTGCCTATGAACACACTCCGAAATTGTACAAATCAAGAAATAGCTATAGCAAAGAATTTGGATGTTCAATCACTAGGACCTTAACATTTTCCAATCTGAACTTTAGTATAGAGTGTGATCTAGTCACCAACTAATGAGATGGAAGAAGGGCAAACTCAATCTCCTGTAATGTTTTCCCTTTCGTTTCCACCACATTCTTTT</gDNA_template>
            <first_frame> S  L  F  L  F  V  C :   I  E  K  S  Q  L  T  L  I  N  C  I  L  Q  Y  Y  Q  Y  F  L  L  Q  Q  S  S  Y  Q  Y  L  A  N  S  K  S  V  T  L  F  L  *  G  M  F  R  V  A  F  P  C  H  A  N  Y  K  N  Q  I  K  V  K  I  K  R  K  V  Y  K  D  N  N  N  R  Y  S  V  V  H  M  *  S  T  T  G  R  G  R  C  S  F  M  L  P  Q  A  I  V  T  D  Q  W  S  E  Q  K  S  S  K  N  K  Q  S  D  N  C  P  M  K  T  R  F  V  T  I  F  I  L  I  V  H  C  C  C  L  S  C  L  *  T  H  S  E  I  V  Q  I  K  K  *  L  *  Q  R  I  W  M  F  N  H  *  D  L  N  I  F  Q  S  E  L  *  Y  R  V  *  S  S  H  Q  L  M  R  W  K  K  G  K  L  N  L  L  *  C  F  P  F  R  F  H  H  I  L   </first_frame>
            <second_frame>  P  F  F  C  L  F   : V  L  K  N  L  S  *  H  *  S  I  V  Y  Y  N  T  T  N  I  S  C  Y  S  R  A  A  T  S  I  L  L  I  Q  N  L  *  H  Y  F  C  K  E  C  L  E  *  P  F  R  V  M  L  I  T  K  I  R  S  R  *  K  L  K  E  R  Y  T  K  I  T  T  I  G  T  L  *  Y  I  C  D  L  L  L  A  E  A  D  A  V  S  C  S  L  R  Q  *  S  P  T  S  G  V  S  K  K  A  A  K  I  S  R  V  T  I  A  L  *  K  L  A  L  *  Q  S  L  S  *  L  F  I  V  A  A  F  P  A  Y  E  H  T  P  K  L  Y  K  S  R  N  S  Y  S  K  E  F  G  C  S  I  T  R  T  L  T  F  S  N  L  N  F  S  I  E  C  D  L  V  T  N  *  *  D  G  R  R  A  N  S  I  S  C  N  V  F  P  F  V  S  T  T  F  F  </second_frame>
            <third_frame>   P  F  F  V  C  L  :  Y  *  K  I  S  A  N  I  N  Q  L  Y  T  T  I  L  P  I  F  L  V  T  A  E  Q  L  P  V  S  C  *  F  K  I  C  N  I  I  S  V  R  N  V  *  S  S  L  S  V  S  C  *  L  Q  K  S  D  Q  G  K  N  *  K  K  G  I  Q  R  *  Q  Q  *  V  L  C  S  T  Y  V  I  Y  Y  W  P  R  Q  M  Q  F  H  A  P  S  G  N  S  H  R  P  V  E  *  A  K  K  Q  Q  K  *  A  E  *  Q  L  P  Y  E  N  S  L  C  D  N  L  Y  L  D  C  S  L  L  L  P  F  L  P  M  N  T  L  R  N  C  T  N  Q  E  I  A  I  A  K  N  L  D  V  Q  S  L  G  P  *  H  F  P  I  *  T  L  V  *  S  V  I  *  S  P  T  N  E  M  E  E  G  Q  T  Q  S  P  V  M  F  S  L  S  F  P  P  H  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0081D06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="46318" PGL_stop="39091"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46318" e_stop="46239"/>
            <exon e_start="46107" e_stop="45956"/>
            <exon e_start="45516" e_stop="45405"/>
            <exon e_start="45281" e_stop="45214"/>
            <exon e_start="44879" e_stop="44747"/>
            <exon e_start="44341" e_stop="44242"/>
            <exon e_start="44177" e_stop="44065"/>
            <exon e_start="43807" e_stop="43714"/>
            <exon e_start="42357" e_stop="42204"/>
            <exon e_start="42115" e_stop="41972"/>
            <exon e_start="41880" e_stop="41807"/>
            <exon e_start="41695" e_stop="41607"/>
            <exon e_start="41208" e_stop="41094"/>
            <exon e_start="39817" e_stop="39091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.179" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.881" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.048" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46318" e_stop="46239" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.978">
            <gDNA_intron_boundary i_start="46238" i_stop="46108" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46107" e_stop="45956" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.799" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45955" i_stop="45517" i_length="439"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45516" e_stop="45405" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.655" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45404" i_stop="45282" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45281" e_stop="45214" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.179">
            <gDNA_intron_boundary i_start="45213" i_stop="44880" i_length="334"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44879" e_stop="44747" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44746" i_stop="44342" i_length="405"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44341" e_stop="44242" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="44241" i_stop="44178" i_length="64"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="44177" e_stop="44065" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44064" i_stop="43808" i_length="257"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="43807" e_stop="43714" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.881" acc_prob="0.981">
            <gDNA_intron_boundary i_start="43713" i_stop="42358" i_length="1356"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="42357" e_stop="42204" e_length="154"/>
          </exon>
          <intron i_serial="9" don_prob="0.957" acc_prob="0.977">
            <gDNA_intron_boundary i_start="42203" i_stop="42116" i_length="88"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="42115" e_stop="41972" e_length="144"/>
          </exon>
          <intron i_serial="10" don_prob="0.961" acc_prob="0.980">
            <gDNA_intron_boundary i_start="41971" i_stop="41881" i_length="91"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="41880" e_stop="41807" e_length="74"/>
          </exon>
          <intron i_serial="11" don_prob="0.048" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41806" i_stop="41696" i_length="111"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="41695" e_stop="41607" e_length="89"/>
          </exon>
          <intron i_serial="12" don_prob="0.831" acc_prob="0.942">
            <gDNA_intron_boundary i_start="41606" i_stop="41209" i_length="398"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="41208" e_stop="41094" e_length="115"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41093" i_stop="39818" i_length="1276"/>
          </intron>
          <exon e_serial="14" e_score="0.982">
            <gDNA_exon_boundary e_start="39817" e_stop="39091" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46318" stop="46239"/>
              <exon start="46107" stop="45956"/>
              <exon start="45516" stop="45405"/>
              <exon start="45281" stop="45214"/>
              <exon start="44879" stop="44747"/>
              <exon start="44341" stop="44242"/>
              <exon start="44177" stop="44065"/>
              <exon start="43807" stop="43714"/>
              <exon start="42357" stop="42204"/>
              <exon start="42115" stop="41972"/>
              <exon start="41880" stop="41807"/>
              <exon start="41695" stop="41607"/>
              <exon start="41208" stop="41094"/>
              <exon start="39817" stop="39091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCCTTTTTTAATTAATTTCTTTCTAAAACTTCACTACCAATATGCAATAGCTAGTGCCTCACAAAACGTTTCAGGAG : GTTGGCGTATATGATTGGGATTTTTGTTACAGTACCATAGATCAGATCACACAATATGAGAGGTGGTGGTCTTGCAGATGCTTACTCCATGTACAAGCGTGCATCAACTAAAGACCAGTTCACTGATTATGAAGATAGAGAAGAAAATCTAG : ATCGTGCCGAAAATGGTGTGTGGAAAGAAATTGGAAACCCCTCATGGAAGCGGCCGTTGCCACATATACTGGTGGCAATTATTTCATCACTCTTGTTTGGCTACCATCTTGG : GGTGGTTAATGACACTCTAGAAAGCATGTCTTTGGACCTTGACTTCAGTGGCAGCACCTTGGCGGAAG : GTCTAGTTGTGAGTACATGTTTGGGAGGTGCTCTTTTGGGCTCTATATTCAGTGGTTGGATAGCAGATGGGGTTGGTCGTCGGAGAGGCTTTCAACTGTGTGCTCTACCAATGATTATAGGTGCTTCTATGAG : TGCCGCAACCAGTACTCTTGGAGTTATGCTTCTTGGAAGGTTATTTGTTGGAATAGGGATGGGCCTTGGCCCTGCTGTTGCTGCTCTCTATGTTGCAGAG : GTTTCACCAGCTTTTGTTAGAGGCACTTATGGGAGTTTCACTCAGATCGCCACATGCCTTGGGCTCCTGGGATCTCTTCTCATTGGAATTCCTGCCAAGGATACTGCTGGTTG : GTGGCGAGTTTGCTTTTGGATATCCACCATTCCTGCTGCAATACTTGCTGTTTTGATGGAATTCTGTGCCGAGAGTCCTCACTGGCTTGTTAAG : AGAGGAAGAATTGATTTAGCTGAAGAAGAGCTTGAAAAGCTTATGGGAGCACCACATGTTAAATATGCCATTGCAGAAATGTCAAAGACAGACAAAGGAGATGAGGTGGATAATGTTAGGTTTGGAGAGCTATTGTATGGTCGCCATTTTAAAG : TGGTTTTCATTGGATCTGCCTTATTTGCTTTGCAACAACTATCTGGAATAAATGCTGTATTTTATTTCTCTTCAACTGTGTTTAAGAAGGCTGGAGTACCTACGGACACTGCAAATACATGTGTTGGGATTGTAAACTTAACAG : GGTCTATTATTGCAATGATGTTGATGGATAGGCTTGGGAGGAAGGTGCTTCTAATTGGGAGTTTTTTGGGCATG : GCAGTCGCAACAGGTCTTCAAGTAGCAGCTGCGAGTTCATTTGTACCAAGCTTTGCAGTATTATACCTATCAGTTGGCGGGACCCTACT : GTATGTGTTAGCATTTTCTTTGGGTGCTGGTCCAGTCCCCAGCCTCCTGCTGTCAGAGATATTTCCTGGCCGGATTAGAGCAAAGGCAATGGCTTTATGCATGGCTGCACATTGG : GTCATAAATTTTTTGGTCGGCCTTCTGTTTCTGCCGATGCTTGAGCATCTTGGACCACAAATAGTTTATGCGATCTTTGCAGGATTTTGCTTGTTTGCACTGGCCTTTGTGAAAAAGAATGTGGTGGAAACGAAAGGGAAAACATTACAGGAGATTGAGTTTGCCCTTCTTCCATCTCATTAGTTGGTGACTAGATCACACTCTATACTAAAGTTCAGATTGGAAAATGTTAAGGTCCTAGTGATTGAACATCCAAATTCTTTGCTATAGCTATTTCTTGATTTGTACAATTTCGGAGTGTGTTCATAGGCAGGAAAGGCAGCAACAATGAACAATCAAGATAAAGATTGTCACAAAGCGAGTTTTCATAGGGCAATTGTCACTCTGCTTATTTTTGCTGCTTTTTTGCTCACTCCACTGGTCGGTGACTATTGCCTGAGGGAGCATGAAACTGCATCTGCCTCGGCCAGTAGTAGATCACATATGTACTACAGAGTACCTATTGTTGTTATCTTTGTATACCTTTCTTTTAATTTTTACCTTGATCTGATTTTTGTAATTAGCATGACACGGAAAGGCTACTCTAAACATTCCTTACAGAAATAATGTTACAGATTTTGAATTAGCAAGATACTGGTAGCTGCTCTGCTGTAACAAGAAATATTGGTAGTATTGTAGTATACAATTGATTAATGTTAGCTGAGATTTTTCAATATTTGTCTTCAGT</gDNA_template>
            <first_frame> F  S  F  F  N  *  F  L  S  K  T  S  L  P  I  C  N  S  *  C  L  T  K  R  F  R  R :   L  A  Y  M  I  G  I  F  V  T  V  P  *  I  R  S  H  N  M  R  G  G  G  L  A  D  A  Y  S  M  Y  K  R  A  S  T  K  D  Q  F  T  D  Y  E  D  R  E  E  N  L   : D  R  A  E  N  G  V  W  K  E  I  G  N  P  S  W  K  R  P  L  P  H  I  L  V  A  I  I  S  S  L  L  F  G  Y  H  L  G :   V  V  N  D  T  L  E  S  M  S  L  D  L  D  F  S  G  S  T  L  A  E   : G  L  V  V  S  T  C  L  G  G  A  L  L  G  S  I  F  S  G  W  I  A  D  G  V  G  R  R  R  G  F  Q  L  C  A  L  P  M  I  I  G  A  S  M  S :   A  A  T  S  T  L  G  V  M  L  L  G  R  L  F  V  G  I  G  M  G  L  G  P  A  V  A  A  L  Y  V  A  E  :  V  S  P  A  F  V  R  G  T  Y  G  S  F  T  Q  I  A  T  C  L  G  L  L  G  S  L  L  I  G  I  P  A  K  D  T  A  G  W :   W  R  V  C  F  W  I  S  T  I  P  A  A  I  L  A  V  L  M  E  F  C  A  E  S  P  H  W  L  V  K  :  R  G  R  I  D  L  A  E  E  E  L  E  K  L  M  G  A  P  H  V  K  Y  A  I  A  E  M  S  K  T  D  K  G  D  E  V  D  N  V  R  F  G  E  L  L  Y  G  R  H  F  K   : V  V  F  I  G  S  A  L  F  A  L  Q  Q  L  S  G  I  N  A  V  F  Y  F  S  S  T  V  F  K  K  A  G  V  P  T  D  T  A  N  T  C  V  G  I  V  N  L  T   : G  S  I  I  A  M  M  L  M  D  R  L  G  R  K  V  L  L  I  G  S  F  L  G  M  :  A  V  A  T  G  L  Q  V  A  A  A  S  S  F  V  P  S  F  A  V  L  Y  L  S  V  G  G  T  L  L :   Y  V  L  A  F  S  L  G  A  G  P  V  P  S  L  L  L  S  E  I  F  P  G  R  I  R  A  K  A  M  A  L  C  M  A  A  H  W  :  V  I  N  F  L  V  G  L  L  F  L  P  M  L  E  H  L  G  P  Q  I  V  Y  A  I  F  A  G  F  C  L  F  A  L  A  F  V  K  K  N  V  V  E  T  K  G  K  T  L  Q  E  I  E  F  A  L  L  P  S  H  *  L  V  T  R  S  H  S  I  L  K  F  R  L  E  N  V  K  V  L  V  I  E  H  P  N  S  L  L  *  L  F  L  D  L  Y  N  F  G  V  C  S  *  A  G  K  A  A  T  M  N  N  Q  D  K  D  C  H  K  A  S  F  H  R  A  I  V  T  L  L  I  F  A  A  F  L  L  T  P  L  V  G  D  Y  C  L  R  E  H  E  T  A  S  A  S  A  S  S  R  S  H  M  Y  Y  R  V  P  I  V  V  I  F  V  Y  L  S  F  N  F  Y  L  D  L  I  F  V  I  S  M  T  R  K  G  Y  S  K  H  S  L  Q  K  *  C  Y  R  F  *  I  S  K  I  L  V  A  A  L  L  *  Q  E  I  L  V  V  L  *  Y  T  I  D  *  C  *  L  R  F  F  N  I  C  L  Q  </first_frame>
            <second_frame>  F  P  F  L  I  N  F  F  L  K  L  H  Y  Q  Y  A  I  A  S  A  S  Q  N  V  S  G   : G  W  R  I  *  L  G  F  L  L  Q  Y  H  R  S  D  H  T  I  *  E  V  V  V  L  Q  M  L  T  P  C  T  S  V  H  Q  L  K  T  S  S  L  I  M  K  I  E  K  K  I  *  :  I  V  P  K  M  V  C  G  K  K  L  E  T  P  H  G  S  G  R  C  H  I  Y  W  W  Q  L  F  H  H  S  C  L  A  T  I  L   : G  W  L  M  T  L  *  K  A  C  L  W  T  L  T  S  V  A  A  P  W  R  K  :  V  *  L  *  V  H  V  W  E  V  L  F  W  A  L  Y  S  V  V  G  *  Q  M  G  L  V  V  G  E  A  F  N  C  V  L  Y  Q  *  L  *  V  L  L  *   : V  P  Q  P  V  L  L  E  L  C  F  L  E  G  Y  L  L  E  *  G  W  A  L  A  L  L  L  L  L  S  M  L  Q  R :   F  H  Q  L  L  L  E  A  L  M  G  V  S  L  R  S  P  H  A  L  G  S  W  D  L  F  S  L  E  F  L  P  R  I  L  L  V   : G  G  E  F  A  F  G  Y  P  P  F  L  L  Q  Y  L  L  F  *  W  N  S  V  P  R  V  L  T  G  L  L  R :   E  E  E  L  I  *  L  K  K  S  L  K  S  L  W  E  H  H  M  L  N  M  P  L  Q  K  C  Q  R  Q  T  K  E  M  R  W  I  M  L  G  L  E  S  Y  C  M  V  A  I  L  K  :  W  F  S  L  D  L  P  Y  L  L  C  N  N  Y  L  E  *  M  L  Y  F  I  S  L  Q  L  C  L  R  R  L  E  Y  L  R  T  L  Q  I  H  V  L  G  L  *  T  *  Q  :  G  L  L  L  Q  *  C  *  W  I  G  L  G  G  R  C  F  *  L  G  V  F  W  A  W :   Q  S  Q  Q  V  F  K  *  Q  L  R  V  H  L  Y  Q  A  L  Q  Y  Y  T  Y  Q  L  A  G  P  Y   : C  M  C  *  H  F  L  W  V  L  V  Q  S  P  A  S  C  C  Q  R  Y  F  L  A  G  L  E  Q  R  Q  W  L  Y  A  W  L  H  I  G :   S  *  I  F  W  S  A  F  C  F  C  R  C  L  S  I  L  D  H  K  *  F  M  R  S  L  Q  D  F  A  C  L  H  W  P  L  *  K  R  M  W  W  K  R  K  G  K  H  Y  R  R  L  S  L  P  F  F  H  L  I  S  W  *  L  D  H  T  L  Y  *  S  S  D  W  K  M  L  R  S  *  *  L  N  I  Q  I  L  C  Y  S  Y  F  L  I  C  T  I  S  E  C  V  H  R  Q  E  R  Q  Q  Q  *  T  I  K  I  K  I  V  T  K  R  V  F  I  G  Q  L  S  L  C  L  F  L  L  L  F  C  S  L  H  W  S  V  T  I  A  *  G  S  M  K  L  H  L  P  R  P  V  V  D  H  I  C  T  T  E  Y  L  L  L  L  S  L  Y  T  F  L  L  I  F  T  L  I  *  F  L  *  L  A  *  H  G  K  A  T  L  N  I  P  Y  R  N  N  V  T  D  F  E  L  A  R  Y  W  *  L  L  C  C  N  K  K  Y  W  *  Y  C  S  I  Q  L  I  N  V  S  *  D  F  S  I  F  V  F  S </second_frame>
            <third_frame>   F  L  F  *  L  I  S  F  *  N  F  T  T  N  M  Q  *  L  V  P  H  K  T  F  Q  E  :  V  G  V  Y  D  W  D  F  C  Y  S  T  I  D  Q  I  T  Q  Y  E  R  W  W  S  C  R  C  L  L  H  V  Q  A  C  I  N  *  R  P  V  H  *  L  *  R  *  R  R  K  S  R :   S  C  R  K  W  C  V  E  R  N  W  K  P  L  M  E  A  A  V  A  T  Y  T  G  G  N  Y  F  I  T  L  V  W  L  P  S  W  :  G  G  *  *  H  S  R  K  H  V  F  G  P  *  L  Q  W  Q  H  L  G  G  R :   S  S  C  E  Y  M  F  G  R  C  S  F  G  L  Y  I  Q  W  L  D  S  R  W  G  W  S  S  E  R  L  S  T  V  C  S  T  N  D  Y  R  C  F  Y  E  :  C  R  N  Q  Y  S  W  S  Y  A  S  W  K  V  I  C  W  N  R  D  G  P  W  P  C  C  C  C  S  L  C  C  R   : G  F  T  S  F  C  *  R  H  L  W  E  F  H  S  D  R  H  M  P  W  A  P  G  I  S  S  H  W  N  S  C  Q  G  Y  C  W  L  :  V  A  S  L  L  L  D  I  H  H  S  C  C  N  T  C  C  F  D  G  I  L  C  R  E  S  S  L  A  C  *   : E  R  K  N  *  F  S  *  R  R  A  *  K  A  Y  G  S  T  T  C  *  I  C  H  C  R  N  V  K  D  R  Q  R  R  *  G  G  *  C  *  V  W  R  A  I  V  W  S  P  F  *  S :   G  F  H  W  I  C  L  I  C  F  A  T  T  I  W  N  K  C  C  I  L  F  L  F  N  C  V  *  E  G  W  S  T  Y  G  H  C  K  Y  M  C  W  D  C  K  L  N  R :   V  Y  Y  C  N  D  V  D  G  *  A  W  E  E  G  A  S  N  W  E  F  F  G  H   : G  S  R  N  R  S  S  S  S  S  C  E  F  I  C  T  K  L  C  S  I  I  P  I  S  W  R  D  P  T  :  V  C  V  S  I  F  F  G  C  W  S  S  P  Q  P  P  A  V  R  D  I  S  W  P  D  *  S  K  G  N  G  F  M  H  G  C  T  L   : G  H  K  F  F  G  R  P  S  V  S  A  D  A  *  A  S  W  T  T  N  S  L  C  D  L  C  R  I  L  L  V  C  T  G  L  C  E  K  E  C  G  G  N  E  R  E  N  I  T  G  D  *  V  C  P  S  S  I  S  L  V  G  D  *  I  T  L  Y  T  K  V  Q  I  G  K  C  *  G  P  S  D  *  T  S  K  F  F  A  I  A  I  S  *  F  V  Q  F  R  S  V  F  I  G  R  K  G  S  N  N  E  Q  S  R  *  R  L  S  Q  S  E  F  S  *  G  N  C  H  S  A  Y  F  C  C  F  F  A  H  S  T  G  R  *  L  L  P  E  G  A  *  N  C  I  C  L  G  Q  *  *  I  T  Y  V  L  Q  S  T  Y  C  C  Y  L  C  I  P  F  F  *  F  L  P  *  S  D  F  C  N  *  H  D  T  E  R  L  L  *  T  F  L  T  E  I  M  L  Q  I  L  N  *  Q  D  T  G  S  C  S  A  V  T  R  N  I  G  S  I  V  V  Y  N  *  L  M  L  A  E  I  F  Q  Y  L  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46067" stop="45956"/>
                    <exon start="45516" stop="45405"/>
                    <exon start="45281" stop="45214"/>
                    <exon start="44879" stop="44747"/>
                    <exon start="44341" stop="44242"/>
                    <exon start="44177" stop="44065"/>
                    <exon start="43807" stop="43714"/>
                    <exon start="42357" stop="42204"/>
                    <exon start="42115" stop="41972"/>
                    <exon start="41880" stop="41807"/>
                    <exon start="41695" stop="41607"/>
                    <exon start="41208" stop="41094"/>
                    <exon start="39817" stop="39635"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1488</number_coding_nucleotides>
                  <number_encoded_amino_acids>496</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRSHNMRGGGLADAYSMYKRASTKDQFTDYEDREENLDRAENGVWKEIGNPSWKRPLPHILVAIISSLLFGYHLGVVNDTLESMSLDLDFSGSTLAEGLVVSTCLGGALLGSIFSGWIADGVGRRRGFQLCALPMIIGASMSAATSTLGVMLLGRLFVGIGMGLGPAVAALYVAEVSPAFVRGTYGSFTQIATCLGLLGSLLIGIPAKDTAGWWRVCFWISTIPAAILAVLMEFCAESPHWLVKRGRIDLAEEELEKLMGAPHVKYAIAEMSKTDKGDEVDNVRFGELLYGRHFKVVFIGSALFALQQLSGINAVFYFSSTVFKKAGVPTDTANTCVGIVNLTGSIIAMMLMDRLGRKVLLIGSFLGMAVATGLQVAAASSFVPSFAVLYLSVGGTLLYVLAFSLGAGPVPSLLLSEIFPGRIRAKAMALCMAAHWVINFLVGLLFLPMLEHLGPQIVYAIFAGFCLFALAFVKKNVVETKGKTLQEIEFALLPSH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39508" stop="39212"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGKAATMNNQDKDCHKASFHRAIVTLLIFAAFLLTPLVGDYCLREHETASASASSRSHMYYRVPIVVIFVYLSFNFYLDLIFVISMTRKGYSKHSLQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41445" e_stop="41094"/>
            <exon e_start="39817" e_stop="39250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.997"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="41445" e_stop="41094" e_length="352"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41093" i_stop="39818" i_length="1276"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="39817" e_stop="39250" e_length="568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41445" stop="41094"/>
              <exon start="39817" stop="39250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAGTAAAGCAGCTAAGAGATGAAGATAAGTAGTTTCGGTACTGCTTCTGTGGATAACAGTTTTCAATTGCATTCTAGTCATTATGTACTTGGTAACTGTTGACTCTGGTTAAATCAATGAAAGATGAGACAATTTTATGCTATAGGTAGCTTTCTTGACTATTAAGGAGATACTACAAATGCACAGATGCAATGGCCAGTTGTTTTCTTCAATAATGGGAAATTATTTATGTTAGGTATGTGTTAGCATTTTCTTTGGGTGCTGGTCCAGTCCCCAGCCTCCTGCTGTCAGAGATATTTCCTGGCCGGATTAGAGCAAAGGCAATGGCTTTATGCATGGCTGCACATTGG : GTCATAAATTTTTTGGTCGGCCTTCTGTTTCTGCCGATGCTTGAGCATCTTGGACCACAAATAGTTTATGCGATCTTTGCAGGATTTTGCTTGTTTGCACTGGCCTTTGTGAAAAAGAATGTGGTGGAAACGAAAGGGAAAACATTACAGGAGATTGAGTTTGCCCTTCTTCCATCTCATTAGTTGGTGACTAGATCACACTCTATACTAAAGTTCAGATTGGAAAATGTTAAGGTCCTAGTGATTGAACATCCAAATTCTTTGCTATAGCTATTTCTTGATTTGTACAATTTCGGAGTGTGTTCATAGGCAGGAAAGGCAGCAACAATGAACAATCAAGATAAAGATTGTCACAAAGCGAGTTTTCATAGGGCAATTGTCACTCTGCTTATTTTTGCTGCTTTTTTGCTCACTCCACTGGTCGGTGACTATTGCCTGAGGGAGCATGAAACTGCATCTGCCTCGGCCAGTAGTAGATCACATATGTACTACAGAGTACCTATTGTTGTTATCTTTGTATACCTTTCTTTTAATTTTTACCTTGATCTGATTTTTGTAATTAGCATGA</gDNA_template>
            <first_frame> V  S  K  A  A  K  R  *  R  *  V  V  S  V  L  L  L  W  I  T  V  F  N  C  I  L  V  I  M  Y  L  V  T  V  D  S  G  *  I  N  E  R  *  D  N  F  M  L  *  V  A  F  L  T  I  K  E  I  L  Q  M  H  R  C  N  G  Q  L  F  S  S  I  M  G  N  Y  L  C  *  V  C  V  S  I  F  F  G  C  W  S  S  P  Q  P  P  A  V  R  D  I  S  W  P  D  *  S  K  G  N  G  F  M  H  G  C  T  L   : G  H  K  F  F  G  R  P  S  V  S  A  D  A  *  A  S  W  T  T  N  S  L  C  D  L  C  R  I  L  L  V  C  T  G  L  C  E  K  E  C  G  G  N  E  R  E  N  I  T  G  D  *  V  C  P  S  S  I  S  L  V  G  D  *  I  T  L  Y  T  K  V  Q  I  G  K  C  *  G  P  S  D  *  T  S  K  F  F  A  I  A  I  S  *  F  V  Q  F  R  S  V  F  I  G  R  K  G  S  N  N  E  Q  S  R  *  R  L  S  Q  S  E  F  S  *  G  N  C  H  S  A  Y  F  C  C  F  F  A  H  S  T  G  R  *  L  L  P  E  G  A  *  N  C  I  C  L  G  Q  *  *  I  T  Y  V  L  Q  S  T  Y  C  C  Y  L  C  I  P  F  F  *  F  L  P  *  S  D  F  C  N  *  H   </first_frame>
            <second_frame>  S  V  K  Q  L  R  D  E  D  K  *  F  R  Y  C  F  C  G  *  Q  F  S  I  A  F  *  S  L  C  T  W  *  L  L  T  L  V  K  S  M  K  D  E  T  I  L  C  Y  R  *  L  S  *  L  L  R  R  Y  Y  K  C  T  D  A  M  A  S  C  F  L  Q  *  W  E  I  I  Y  V  R  Y  V  L  A  F  S  L  G  A  G  P  V  P  S  L  L  L  S  E  I  F  P  G  R  I  R  A  K  A  M  A  L  C  M  A  A  H  W  :  V  I  N  F  L  V  G  L  L  F  L  P  M  L  E  H  L  G  P  Q  I  V  Y  A  I  F  A  G  F  C  L  F  A  L  A  F  V  K  K  N  V  V  E  T  K  G  K  T  L  Q  E  I  E  F  A  L  L  P  S  H  *  L  V  T  R  S  H  S  I  L  K  F  R  L  E  N  V  K  V  L  V  I  E  H  P  N  S  L  L  *  L  F  L  D  L  Y  N  F  G  V  C  S  *  A  G  K  A  A  T  M  N  N  Q  D  K  D  C  H  K  A  S  F  H  R  A  I  V  T  L  L  I  F  A  A  F  L  L  T  P  L  V  G  D  Y  C  L  R  E  H  E  T  A  S  A  S  A  S  S  R  S  H  M  Y  Y  R  V  P  I  V  V  I  F  V  Y  L  S  F  N  F  Y  L  D  L  I  F  V  I  S  M  </second_frame>
            <third_frame>   Q  *  S  S  *  E  M  K  I  S  S  F  G  T  A  S  V  D  N  S  F  Q  L  H  S  S  H  Y  V  L  G  N  C  *  L  W  L  N  Q  *  K  M  R  Q  F  Y  A  I  G  S  F  L  D  Y  *  G  D  T  T  N  A  Q  M  Q  W  P  V  V  F  F  N  N  G  K  L  F  M  L  G  M  C  *  H  F  L  W  V  L  V  Q  S  P  A  S  C  C  Q  R  Y  F  L  A  G  L  E  Q  R  Q  W  L  Y  A  W  L  H  I  G :   S  *  I  F  W  S  A  F  C  F  C  R  C  L  S  I  L  D  H  K  *  F  M  R  S  L  Q  D  F  A  C  L  H  W  P  L  *  K  R  M  W  W  K  R  K  G  K  H  Y  R  R  L  S  L  P  F  F  H  L  I  S  W  *  L  D  H  T  L  Y  *  S  S  D  W  K  M  L  R  S  *  *  L  N  I  Q  I  L  C  Y  S  Y  F  L  I  C  T  I  S  E  C  V  H  R  Q  E  R  Q  Q  Q  *  T  I  K  I  K  I  V  T  K  R  V  F  I  G  Q  L  S  L  C  L  F  L  L  L  F  C  S  L  H  W  S  V  T  I  A  *  G  S  M  K  L  H  L  P  R  P  V  V  D  H  I  C  T  T  E  Y  L  L  L  L  S  L  Y  T  F  L  L  I  F  T  L  I  *  F  L  *  L  A  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41228" stop="41094"/>
                    <exon start="39817" stop="39635"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WEIIYVRYVLAFSLGAGPVPSLLLSEIFPGRIRAKAMALCMAAHWVINFLVGLLFLPMLEHLGPQIVYAIFAGFCLFALAFVKKNVVETKGKTLQEIEFALLPSH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39508" stop="39251"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGKAATMNNQDKDCHKASFHRAIVTLLIFAAFLLTPLVGDYCLREHETASASASSRSHMYYRVPIVVIFVYLSFNFYLDLIFVISM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="44160" e_stop="44065"/>
            <exon e_start="43807" e_stop="43714"/>
            <exon e_start="42357" e_stop="42060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44160" e_stop="44065" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44064" i_stop="43808" i_length="257"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43807" e_stop="43714" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.881" acc_prob="0.981">
            <gDNA_intron_boundary i_start="43713" i_stop="42358" i_length="1356"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42357" e_stop="42060" e_length="298"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44160" stop="44065"/>
              <exon start="43807" stop="43714"/>
              <exon start="42357" stop="42060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAGGCACTTATGGGAGTTTCACTCAGATCGCCACATGCCTTGGGCTCCTGGGATCTCTTCTCATTGGAATTCCTGCCAAGGATACTGCTGGTTG : GTGGCGAGTTTGCTTTTGGATATCCACCATTCCTGCTGCAATACTTGCTGTTTTGATGGAATTCTGTGCCGAGAGTCCTCACTGGCTTGTTAAG : AGAGGAAGAATTGATTTAGCTGAAGAAGAGCTTGAAAAGCTTATGGGAGCACCACATGTTAAATATGCCATTGCAGAAATGTCAAAGACAGACAAAGGAGATGAGGTGGATAATGTTAGGTTTGGAGAGCTATTGTATGGTCGCCATTTTAAAGGTATAATTATTGATGATGTGTTCCCATTCTGTCAATATTTTTCTGTGTGAATAAGTTGATGAATTTATAACTTTTGCTGTTTGTACAGTGGTTTTCATTGGATCTGCCTTATTTGCTTTGCAACAACTATCTGGAATAAATGCT</gDNA_template>
            <first_frame> *  R  H  L  W  E  F  H  S  D  R  H  M  P  W  A  P  G  I  S  S  H  W  N  S  C  Q  G  Y  C  W  L  :  V  A  S  L  L  L  D  I  H  H  S  C  C  N  T  C  C  F  D  G  I  L  C  R  E  S  S  L  A  C  *   : E  R  K  N  *  F  S  *  R  R  A  *  K  A  Y  G  S  T  T  C  *  I  C  H  C  R  N  V  K  D  R  Q  R  R  *  G  G  *  C  *  V  W  R  A  I  V  W  S  P  F  *  R  Y  N  Y  *  *  C  V  P  I  L  S  I  F  F  C  V  N  K  L  M  N  L  *  L  L  L  F  V  Q  W  F  S  L  D  L  P  Y  L  L  C  N  N  Y  L  E  *  M   </first_frame>
            <second_frame>  R  G  T  Y  G  S  F  T  Q  I  A  T  C  L  G  L  L  G  S  L  L  I  G  I  P  A  K  D  T  A  G  W :   W  R  V  C  F  W  I  S  T  I  P  A  A  I  L  A  V  L  M  E  F  C  A  E  S  P  H  W  L  V  K  :  R  G  R  I  D  L  A  E  E  E  L  E  K  L  M  G  A  P  H  V  K  Y  A  I  A  E  M  S  K  T  D  K  G  D  E  V  D  N  V  R  F  G  E  L  L  Y  G  R  H  F  K  G  I  I  I  D  D  V  F  P  F  C  Q  Y  F  S  V  *  I  S  *  *  I  Y  N  F  C  C  L  Y  S  G  F  H  W  I  C  L  I  C  F  A  T  T  I  W  N  K  C  </second_frame>
            <third_frame>   E  A  L  M  G  V  S  L  R  S  P  H  A  L  G  S  W  D  L  F  S  L  E  F  L  P  R  I  L  L  V   : G  G  E  F  A  F  G  Y  P  P  F  L  L  Q  Y  L  L  F  *  W  N  S  V  P  R  V  L  T  G  L  L  R :   E  E  E  L  I  *  L  K  K  S  L  K  S  L  W  E  H  H  M  L  N  M  P  L  Q  K  C  Q  R  Q  T  K  E  M  R  W  I  M  L  G  L  E  S  Y  C  M  V  A  I  L  K  V  *  L  L  M  M  C  S  H  S  V  N  I  F  L  C  E  *  V  D  E  F  I  T  F  A  V  C  T  V  V  F  I  G  S  A  L  F  A  L  Q  Q  L  S  G  I  N  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44159" stop="44065"/>
                    <exon start="43807" stop="43714"/>
                    <exon start="42357" stop="42154"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGTYGSFTQIATCLGLLGSLLIGIPAKDTAGWWRVCFWISTIPAAILAVLMEFCAESPHWLVKRGRIDLAEEELEKLMGAPHVKYAIAEMSKTDKGDEVDNVRFGELLYGRHFKGIIIDDVFPFCQYFSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="46312" e_stop="46239"/>
            <exon e_start="46148" e_stop="45956"/>
            <exon e_start="45516" e_stop="45405"/>
            <exon e_start="45281" e_stop="45214"/>
            <exon e_start="44879" e_stop="44837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.844" e_score="0.784"/>
          <exon-intron don_prob="0.799" acc_prob="0.999" e_score="0.902"/>
          <exon-intron don_prob="0.655" acc_prob="1.000" e_score="0.982"/>
          <exon-intron don_prob="0.000" acc_prob="0.179" e_score="0.971"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.784">
            <gDNA_exon_boundary e_start="46312" e_stop="46239" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.844">
            <gDNA_intron_boundary i_start="46238" i_stop="46149" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.902">
            <gDNA_exon_boundary e_start="46148" e_stop="45956" e_length="193"/>
          </exon>
          <intron i_serial="2" don_prob="0.799" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45955" i_stop="45517" i_length="439"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="45516" e_stop="45405" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.655" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45404" i_stop="45282" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="45281" e_stop="45214" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.179">
            <gDNA_intron_boundary i_start="45213" i_stop="44880" i_length="334"/>
          </intron>
          <exon e_serial="5" e_score="0.977">
            <gDNA_exon_boundary e_start="44879" e_stop="44837" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46312" stop="46239"/>
              <exon start="46148" stop="45956"/>
              <exon start="45516" stop="45405"/>
              <exon start="45281" stop="45214"/>
              <exon start="44879" stop="44837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418503" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTAATTAATTTCTTTCTAAAACTTCACTACCAATATGCAATAGCTAGTGCCTCACAAAACGTTTCAGGAG : TATGGAATTTTGCCTTGATATCAGATCTGGCATTTGGGCAGGTTGGCGTATATGATTGGGATTTTTGTTACAGTACCATAGATCAGATCACACAATATGAGAGGTGGTGGTCTTGCAGATGCTTACTCCATGTACAAGCGTGCATCAACTAAAGACCAGTTCACTGATTATGAAGATAGAGAAGAAAATCTAG : ATCGTGCCGAAAATGGTGTGTGGAAAGAAATTGGAAACCCCTCATGGAAGCGGCCGTTGCCACATATACTGGTGGCAATTATTTCATCACTCTTGTTTGGCTACCATCTTGG : GGTGGTTAATGACACTCTAGAAAGCATGTCTTTGGACCTTGACTTCAGTGGCAGCACCTTGGCGGAAG : GTCTAGTTGTGAGTACATGTTTGGGAGGTGCTCTTTTGGGCTC</gDNA_template>
            <first_frame> F  F  N  *  F  L  S  K  T  S  L  P  I  C  N  S  *  C  L  T  K  R  F  R  S :   M  E  F  C  L  D  I  R  S  G  I  W  A  G  W  R  I  *  L  G  F  L  L  Q  Y  H  R  S  D  H  T  I  *  E  V  V  V  L  Q  M  L  T  P  C  T  S  V  H  Q  L  K  T  S  S  L  I  M  K  I  E  K  K  I  *  :  I  V  P  K  M  V  C  G  K  K  L  E  T  P  H  G  S  G  R  C  H  I  Y  W  W  Q  L  F  H  H  S  C  L  A  T  I  L   : G  W  L  M  T  L  *  K  A  C  L  W  T  L  T  S  V  A  A  P  W  R  K  :  V  *  L  *  V  H  V  W  E  V  L  F  W  A  </first_frame>
            <second_frame>  F  L  I  N  F  F  L  K  L  H  Y  Q  Y  A  I  A  S  A  S  Q  N  V  S  G   : V  W  N  F  A  L  I  S  D  L  A  F  G  Q  V  G  V  Y  D  W  D  F  C  Y  S  T  I  D  Q  I  T  Q  Y  E  R  W  W  S  C  R  C  L  L  H  V  Q  A  C  I  N  *  R  P  V  H  *  L  *  R  *  R  R  K  S  R :   S  C  R  K  W  C  V  E  R  N  W  K  P  L  M  E  A  A  V  A  T  Y  T  G  G  N  Y  F  I  T  L  V  W  L  P  S  W  :  G  G  *  *  H  S  R  K  H  V  F  G  P  *  L  Q  W  Q  H  L  G  G  R :   S  S  C  E  Y  M  F  G  R  C  S  F  G  L </second_frame>
            <third_frame>   F  *  L  I  S  F  *  N  F  T  T  N  M  Q  *  L  V  P  H  K  T  F  Q  E  :  Y  G  I  L  P  *  Y  Q  I  W  H  L  G  R  L  A  Y  M  I  G  I  F  V  T  V  P  *  I  R  S  H  N  M  R  G  G  G  L  A  D  A  Y  S  M  Y  K  R  A  S  T  K  D  Q  F  T  D  Y  E  D  R  E  E  N  L   : D  R  A  E  N  G  V  W  K  E  I  G  N  P  S  W  K  R  P  L  P  H  I  L  V  A  I  I  S  S  L  L  F  G  Y  H  L  G :   V  V  N  D  T  L  E  S  M  S  L  D  L  D  F  S  G  S  T  L  A  E   : G  L  V  V  S  T  C  L  G  G  A  L  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46067" stop="45956"/>
                    <exon start="45516" stop="45405"/>
                    <exon start="45281" stop="45214"/>
                    <exon start="44879" stop="44839"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRSHNMRGGGLADAYSMYKRASTKDQFTDYEDREENLDRAENGVWKEIGNPSWKRPLPHILVAIISSLLFGYHLGVVNDTLESMSLDLDFSGSTLAEGLVVSTCLGGALLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="62303" PGL_stop="46481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62303" e_stop="62194"/>
            <exon e_start="62012" e_stop="61817"/>
            <exon e_start="59988" e_stop="58895"/>
            <exon e_start="57994" e_stop="57923"/>
            <exon e_start="56757" e_stop="56683"/>
            <exon e_start="55573" e_stop="55459"/>
            <exon e_start="54404" e_stop="54343"/>
            <exon e_start="54257" e_stop="54210"/>
            <exon e_start="52221" e_stop="51937"/>
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          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGACGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAGTTCCAAGTGTG : GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG : CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG : GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA : AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG : GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG : GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG : ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG : GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG : GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA : GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAG : GAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG : GAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG : ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG : GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG : TTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG : GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG : TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGT</gDNA_template>
            <first_frame> K  T  V  T  V  D  A  E  V  H  R  S  C  R  S  I  S  F  S  P  F  P  K  S  F  H  F  Y  C  S  A  S  K  F  Q  V  W :   M  K  E  L  S  M  *  F  E  L  W  I  E  S  K  R  W  R  G  L  V  G  N  L  I  *  R  T  W  I  L  P  V  P  *  I  S  S  V  R  V  S  K  T  L  K  K  I  S  T  L  H  L  V  S  R  R  N  L  S  L  V  T  M  K  :  L  Q  G  Y  G  L  Q  L  R  I  G  G  P  Y  L  I  L  S  C  L  L  W  G  K  K  V  R  G  L  L  K  N  L  *  R  K  L  S  R  Q  S  P  P  C  P  Q  G  K  *  L  K  I  Q  L  R  L  Q  L  D  V  V  W  F  L  K  N  Q  K  K  K  Q  R  T  L  L  K  K  L  N  R  F  K  N  L  L  K  K  Q  R  M  L  M  R  N  Q  I  K  *  Y  L  L  K  K  K  L  R  R  Q  E  L  L  M  S  N  *  I  L  L  R  N  Q  V  L  I  R  R  N  K  E  V  L  L  G  Q  M  K  E  K  L  K  L  I  H  W  Q  K  H  R  R  S  M  S  L  I  R  K  H  L  Q  E  S  S  K  R  I  F  Q  S  E  N  H  L  K  T  S  S  W  L  F  P  N  H  Q  M  L  Y  L  K  L  K  L  V  S  R  C  L  L  I  Q  R  K  I  L  V  M  M  G  N  R  R  K  K  S  L  R  N  L  L  L  F  N  *  R  M  H  Q  I  T  L  Q  T  G  N  R  R  K  K  S  P  W  N  L  L  Q  L  N  H  G  M  H  Q  V  T  E  Q  I  V  E  D  L  L  F  Q  I  L  *  L  P  A  K  V  K  V  L  K  S  I  L  T  G  A  F  L  V  T  S  T  L  M  K  V  *  R  S  Y  L  I  Q  L  C  L  K  M  S  W  L  V  Y  L  W  R  L  P  S  E  E  M  I  R  R  L  V  *  K  N  G  *  A  P  E  A  T  L  Q  M  L  P  I  Q  W  L  N  W  R  S  *  K  R  K  *  K  *  W  K  L  H  Y  K  E  L  L  D  K  L  R :   L  K  L  M  K  *  R  S  *  *  M  R  T  S  N  *  R  L  L  L  R  I  *  E :   G  S  P  V  M  Q  Q  L  N  L  C  E  K  S  T  I  K  K  F  L  L  L  R  G  R :   F  M  L  S  P  K  K  G  I  H  F  A  G  N  I  I  R  R  V  M  L  Q  L  F  S  K  R  R  M  R  *  L  L  K  *  W  L  K  :  V  S  S  F  L  K  S  K  L  P  K  K  L  R  *  E  S  *  G  H  R :   S  E  S  L  K  K  R  R  K  D  Y  I  P  S  L  R :   L  K  R  T  K  *  R  V  *  R  G  T  R  Q  Q  Q  K  N  C  F  M  K  Q  S  K  N  I  K  Q  N  L  Q  L  K  K  N  T  I  L  M  L  *  M  L  Q  K  K  Q  K  L  Y  L  R  H  G  L  T  M  K  L  E  L  N  *  R  V  V  S  E  R  L  K  T  V  K  Q  C  L  F  R  H  L  K  N  *  G  K  H  L  P  E  R  S  S  R :   Q  F  L  K  K  I  C  S  A  E  K  L  K  I  S  R  K  D  T  K :   P  V  N  V  D  V  R  S  *  *  H  K  F  P  N  L  P  D  L  F  S  G  R  *  K  P  C  R :   K  Q  T  P  E  R  L  K  L  G  L  L  L  R  E  P  *  I  H  V  F  R :   K  P  R  Q  K  L  Q  L  Q  K  K  R  S  D  L  L  M  N  A  F  L  K  P  Y  P  E  S  M  F  L  R  L  R :   Y  L  V  L  E  L  S  R  H  S  *  Q  G  P  L  T  K  R  D  S  G  P  Q  R  I  G  K  N  I  L  L  *  R  R  K  L  R  L  T  K  V  V  *  I  S  L  K  R  K  L  K  N  S  E  G  N  T  S  R  K  Y  K  K  H  *  L  I  R  N  S  C  G  R :   S  W  K  G  R  K  L  L  V  W  I  K  K  G  P  L  V  L  L  I  M  C  L  I  R  A  Q  *  *  S  R  N  L  G  *  K  M  :  L  Q  E  V  *  H  A  D  F  R  V  L  A  A  *  V  V  W  R  K  A  I  F  C  K  H  L  W  T  R  L  T  I  Y  L  S  V  E  M  H  *  R  V  I  *  V  H  T  L  *  R  V  *  R  L  H  F  A  R  K  M  G  N  L  R  L  I  C  L  D  W :   H  L  W  K  P  S  V  T  P  L  L  R  S  W  L  K  *  L  Q  S :   V  K  S  Y  V  Q  K  L  P  C  C  L  A  S  E  Q  S  *  M  H  L  G  G  D  T  R  Q  L  L  N  *  W  V  N  V  M  R  S :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F  K  L  C  F  Q  V  Q  L  K  L  L  K  W  </first_frame>
            <second_frame>  R  R  *  R  W  T  L  K  F  T  V  P  A  D  R  F  L  F  R  P  S  Q  N  L  F  I  F  I  A  P  L  P  S  S  K  C   : G  *  R  S  F  P  C  N  L  S  F  G  S  S  Q  K  D  G  V  V  W  W  E  T  *  F  D  E  L  G  S  C  R  C  R  E  *  A  Q  *  E  C  Q  K  H  *  K  K  F  R  H  C  T  W  S  R  G  E  I  *  V  *  *  Q  *  S :   F  R  V  M  A  F  N  Y  G  *  E  G  L  I  *  S  C  H  V  F  Y  G  A  K  K  *  G  D  C  *  R  I  C  R  E  S  *  V  V  K  A  H  L  A  H  R  G  S  S  *  R  F  S  *  D  Y  N  S  T  W  C  G  S  *  R  T  K  R  R  N  N  G  H  Y  *  R  N  *  I  G  S  R  T  Y  *  R  S  K  G  C  *  C  E  T  K  S  N  D  I  C  *  R  R  N  *  G  G  K  S  C  *  C  P  T  E  F  F  Y  G  T  K  F  *  S  G  G  T  K  K  C  Y  W  A  R  *  K  K  S  *  N  *  F  T  G  R  S  I  E  G  Q  *  A  *  S  G  N  I  S  R  N  P  P  K  E  Y  S  R  A  R  I  I  *  K  P  R  V  G  C  F  P  I  I  K  C  F  I  S  N  *  S  W  Y  P  A  A  C  *  F  K  G  K  Y  W  *  *  W  G  T  E  E  R  S  H  *  G  I  S  S  C  S  I  R  G  C  I  K  L  P  Y  R  Q  G  T  E  E  R  S  H  H  G  I  S  F  S  *  I  T  G  C  I  K  *  P  S  R  *  W  K  T  F  C  F  R  F  C  N  C  Q  R  R  *  K  S  *  R  A  F  *  Q  E  L  S  W  *  P  A  H  *  *  R  S  E  E  A  I  *  Y  S  Y  A  *  K  *  V  G  *  Y  T  C  G  G  Y  P  A  R  K  *  S  G  D  W  C  E  R  T  V  E  L  R  K  Q  L  F  R  C  Y  Q  F  S  G  *  T  G  E  A  E  K  G  N  E  N  D  G  N  C  I  T  R  S  C  *  T  S  S   : G  *  S  *  *  N  S  E  V  D  E  *  E  R  A  I  E  G  C  Y  *  G  S  E   : K  E  V  Q  *  C  S  N  *  I  S  A  R  R  V  P  S  K  S  F  C  S  *  E  E   : G  L  C  S  H  Q  R  K  G  Y  T  S  Q  G  T  *  *  E  E  *  C  C  S  S  S  Q  R  E  G  *  D  N  Y  S  S  N  G  *  R :   *  A  A  F  *  K  A  S  C  P  R  S  S  D  E  K  V  K  G  T   : D  Q  R  A  *  R  R  E  E  R  I  T  Y  Q  A  *   : G  *  R  E  Q  S  R  E  Y  K  E  G  Q  G  S  N  R  K  I  A  S  *  N  S  R  K  T  S  S  R  T  C  N  S  K  R  I  L  Y  *  C  F  K  C  C  K  R  S  R  S  F  I  *  G  T  G  *  Q  *  S  *  N  S  T  R  G  S  S  Q  R  G  *  R  P  *  S  N  A  C  S  G  T  *  R  I  K  A  N  T  Y  Q  N  G  A  A   : G  S  F  *  R  R  Y  A  P  Q  R  N  *  R  S  P  E  K  I  P   : S  Q  *  T  S  M  *  G  V  D  N  T  S  S  R  I  Y  Q  T  S  S  Q  A  D  R  S  H  A   : G  N  K  L  Q  K  G  *  S  L  G  C  C  *  E  N  L  E  F  T  S  S   : G  S  R  G  K  S  C  N  F  R  R  K  G  A  I  Y  *  *  T  P  F  S  N  P  I  P  N  Q  C  S  *  G  S   : D  I  L  S  *  S  *  A  D  T  A  N  K  V  P  *  Q  R  E  T  A  G  R  R  E  *  A  R  I  S  C  S  K  G  G  S  *  D  *  R  R  S  C  E  S  A  *  R  G  N  *  R  T  Q  K  E  T  Q  A  G  N  T  R  S  I  N  S  S  G  T  P  A  A   : G  V  G  K  G  E  N  C  S  F  G  S  R  K  G  R  S  F  Y  *  L  C  A  *  S  E  P  N  N  E  A  E  I  W  D  R  K  C :   C  R  K  F  D  T  Q  T  F  E  C  *  Q  L  E  *  Y  G  G  K  L  F  S  A  S  I  F  G  L  V  *  Q  F  I  *  A  *  K  C  I  R  G  *  Y  K  S  I  L  Y  E  E  Y  D  A  C  I  S  P  E  R  W  G  T  C  V  L  Y  V  S  T   : G  I  Y  G  S  H  P  *  L  P  C  *  G  V  G  *  N  D  C  R   : V  *  K  A  T  F  R  S  F  H  A  A  W  H  P  S  R  A  R  C  T  *  E  E  T  L  G  S  S  *  I  D  G  *  T  *  *  G   : V  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L  S  F  V  S  K  C  N  *  S  Y  *  N  G </second_frame>
            <third_frame>   D  G  D  G  G  R  *  S  S  P  F  L  Q  I  D  F  F  F  A  L  P  K  I  F  S  F  L  L  L  R  F  Q  V  P  S  V  :  D  E  G  A  F  H  V  I  *  A  L  D  R  V  K  K  M  A  W  F  G  G  K  L  D  L  T  N  L  D  L  A  G  A  V  N  K  L  S  E  S  V  K  N  I  E  K  N  F  D  T  A  L  G  L  E  E  K  S  E  S  S  N  N  E   : A  S  G  L  W  P  S  T  T  D  R  R  A  L  F  D  P  V  M  S  F  M  G  Q  K  S  E  G  T  A  E  E  S  V  E  K  A  E  S  S  K  P  T  L  P  T  G  E  V  V  E  D  S  A  E  T  T  T  R  R  G  V  V  P  K  E  P  K  E  E  T  T  D  I  I  E  E  T  K  S  V  Q  E  P  I  E  E  A  K  D  V  D  A  K  P  N  Q  M  I  S  A  E  E  E  T  E  E  A  R  A  V  D  V  Q  L  N  S  S  T  E  P  S  F  D  Q  E  E  Q  R  S  V  T  G  P  D  E  R  K  A  E  I  N  S  L  A  E  A  S  K  V  N  E  L  D  Q  E  T  S  P  G  I  L  Q  K  N  I  P  E  R  E  S  S  E  N  L  E  L  V  V  S  Q  S  S  N  A  L  S  Q  T  E  V  G  I  P  L  L  V  D  S  K  E  N  T  G  N  D  G  E  Q  K  K  E  V  T  E  E  S  P  P  V  Q  L  E  D  A  S  N  Y  P  T  D  R  E  Q  K  K  E  V  T  M  E  S  P  S  A  E  S  R  D  A  S  S  D  R  A  D  S  G  R  P  S  V  S  D  S  V  T  A  S  E  G  E  S  L  E  E  H  S  N  R  S  F  L  G  D  Q  H  T  D  E  G  L  K  K  L  S  D  T  V  M  P  E  N  E  L  V  S  I  P  V  E  A  T  Q  R  G  N  D  Q  E  T  G  V  K  E  R  L  S  S  G  S  N  S  S  D  V  T  N  S  V  V  E  L  E  K  L  K  K  E  M  K  M  M  E  T  A  L  Q  G  A  A  R  Q  A  Q  :  A  K  A  D  E  I  A  K  L  M  N  E  N  E  Q  L  K  A  V  T  E  D  L  R  :  R  K  S  S  D  A  A  I  E  S  L  R  E  E  Y  H  Q  K  V  S  A  L  E  R  K  :  V  Y  A  L  T  K  E  R  D  T  L  R  R  E  H  N  K  K  S  D  A  A  A  L  L  K  E  K  D  E  I  I  T  Q  V  M  A  E   : G  E  Q  L  S  K  K  Q  A  A  Q  E  A  Q  M  R  K  L  R  A  Q  :  I  R  E  L  E  E  E  K  K  G  L  H  T  K  L  E  :  V  E  E  N  K  V  E  S  I  K  R  D  K  A  A  T  E  K  L  L  H  E  T  V  E  K  H  Q  A  E  L  A  T  Q  K  E  Y  Y  T  N  A  L  N  A  A  K  E  A  E  A  L  S  E  A  R  A  N  N  E  A  R  T  Q  L  E  G  R  L  R  E  A  E  D  R  E  A  M  L  V  Q  A  L  E  E  L  R  Q  T  L  T  R  T  E  Q  Q  :  A  V  F  K  E  D  M  L  R  R  E  I  E  D  L  Q  K  R  Y  Q  :  A  S  E  R  R  C  E  E  L  I  T  Q  V  P  E  S  T  R  P  L  L  R  Q  I  E  A  M  Q  :  E  T  N  S  R  K  A  E  A  W  A  A  V  E  R  T  L  N  S  R  L  Q  :  E  A  E  A  K  A  A  T  S  E  E  K  E  R  S  I  N  E  R  L  S  Q  T  L  S  R  I  N  V  L  E  A  Q  :  I  S  C  L  R  A  E  Q  T  Q  L  T  R  S  L  D  K  E  R  Q  R  A  A  E  N  R  Q  E  Y  L  A  L  K  E  E  A  E  T  N  E  G  R  V  N  Q  L  E  E  E  I  K  E  L  R  R  K  H  K  Q  E  I  Q  E  A  L  T  H  Q  E  L  L  R  Q  :  E  L  E  R  E  K  T  A  R  L  D  Q  E  R  A  A  R  S  T  N  Y  V  P  D  Q  S  P  I  M  K  Q  K  S  G  I  E  N   : V  A  G  S  L  T  R  R  L  S  S  A  S  S  L  S  S  M  E  E  S  Y  F  L  Q  A  S  L  D  S  S  D  N  L  S  E  R  R  N  A  L  E  G  N  I  S  P  Y  F  M  K  S  M  T  P  A  F  R  Q  K  D  G  E  L  A  S  Y  M  S  R  L  :  A  S  M  E  A  I  R  D  S  L  A  E  E  L  V  K  M  T  A  E  :  C  E  K  L  R  S  E  A  S  M  L  P  G  I  R  A  E  L  D  A  L  R  R  R  H  S  A  A  L  E  L  M  G  E  R  D  E  E  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  *  A  L  F  P  S  A  I  K  V  T  E  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61985" stop="61817"/>
                    <exon start="59988" stop="58895"/>
                    <exon start="57994" stop="57923"/>
                    <exon start="56757" stop="56683"/>
                    <exon start="55573" stop="55459"/>
                    <exon start="54404" stop="54343"/>
                    <exon start="54257" stop="54210"/>
                    <exon start="52221" stop="51937"/>
                    <exon start="51859" stop="51800"/>
                    <exon start="51717" stop="51634"/>
                    <exon start="51530" stop="51465"/>
                    <exon start="51393" stop="51295"/>
                    <exon start="51218" stop="51000"/>
                    <exon start="50280" stop="50169"/>
                    <exon start="49854" stop="49643"/>
                    <exon start="49405" stop="49346"/>
                    <exon start="49223" stop="49110"/>
                    <exon start="47545" stop="47471"/>
                    <exon start="47386" stop="47351"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>3054</number_coding_nucleotides>
                  <number_encoded_amino_acids>1018</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALDRVKKMAWFGGKLDLTNLDLAGAVNKLSESVKNIEKNFDTALGLEEKSESSNNEASGLWPSTTDRRALFDPVMSFMGQKSEGTAEESVEKAESSKPTLPTGEVVEDSAETTTRRGVVPKEPKEETTDIIEETKSVQEPIEEAKDVDAKPNQMISAEEETEEARAVDVQLNSSTEPSFDQEEQRSVTGPDERKAEINSLAEASKVNELDQETSPGILQKNIPERESSENLELVVSQSSNALSQTEVGIPLLVDSKENTGNDGEQKKEVTEESPPVQLEDASNYPTDREQKKEVTMESPSAESRDASSDRADSGRPSVSDSVTASEGESLEEHSNRSFLGDQHTDEGLKKLSDTVMPENELVSIPVEATQRGNDQETGVKERLSSGSNSSDVTNSVVELEKLKKEMKMMETALQGAARQAQAKADEIAKLMNENEQLKAVTEDLRRKSSDAAIESLREEYHQKVSALERKVYALTKERDTLRREHNKKSDAAALLKEKDEIITQVMAEGEQLSKKQAAQEAQMRKLRAQIRELEEEKKGLHTKLEVEENKVESIKRDKAATEKLLHETVEKHQAELATQKEYYTNALNAAKEAEALSEARANNEARTQLEGRLREAEDREAMLVQALEELRQTLTRTEQQAVFKEDMLRREIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETNSRKAEAWAAVERTLNSRLQEAEAKAATSEEKERSINERLSQTLSRINVLEAQISCLRAEQTQLTRSLDKERQRAAENRQEYLALKEEAETNEGRVNQLEEEIKELRRKHKQEIQEALTHQELLRQELEREKTARLDQERAARSTNYVPDQSPIMKQKSGIENVAGSLTRRLSSASSLSSMEESYFLQASLDSSDNLSERRNALEGNISPYFMKSMTPAFRQKDGELASYMSRLASMEAIRDSLAEELVKMTAECEKLRSEASMLPGIRAELDALRRRHSAALELMGERDEELEELRADIIDMKEMYREQVNLLVNKIQVLSSSLSAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47372" stop="47100"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLALSFVSKCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
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        </AGS_line>
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          <exon-intron don_prob="0.999" acc_prob="0.617" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="0.991"/>
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          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.710" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.822" e_score="1.000"/>
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          <exon-intron don_prob="0.933" acc_prob="0.947" e_score="1.000"/>
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          <exon-intron don_prob="0.990" acc_prob="0.921" e_score="1.000"/>
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          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
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        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
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          <PGS_line>
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          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGACGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAGTTCCAAGTGTG : GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG : CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG : GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA : AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG : GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG : GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG : ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG : GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG : GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA : GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAG : GAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG : GAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG : ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG : GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG : TTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG : GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG : TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA : AAAAGGAAAAAGCAACAA</gDNA_template>
            <first_frame> K  T  V  T  V  D  A  E  V  H  R  S  C  R  S  I  S  F  S  P  F  P  K  S  F  H  F  Y  C  S  A  S  K  F  Q  V  W :   M  K  E  L  S  M  *  F  E  L  W  I  E  S  K  R  W  R  G  L  V  G  N  L  I  *  R  T  W  I  L  P  V  P  *  I  S  S  V  R  V  S  K  T  L  K  K  I  S  T  L  H  L  V  S  R  R  N  L  S  L  V  T  M  K  :  L  Q  G  Y  G  L  Q  L  R  I  G  G  P  Y  L  I  L  S  C  L  L  W  G  K  K  V  R  G  L  L  K  N  L  *  R  K  L  S  R  Q  S  P  P  C  P  Q  G  K  *  L  K  I  Q  L  R  L  Q  L  D  V  V  W  F  L  K  N  Q  K  K  K  Q  R  T  L  L  K  K  L  N  R  F  K  N  L  L  K  K  Q  R  M  L  M  R  N  Q  I  K  *  Y  L  L  K  K  K  L  R  R  Q  E  L  L  M  S  N  *  I  L  L  R  N  Q  V  L  I  R  R  N  K  E  V  L  L  G  Q  M  K  E  K  L  K  L  I  H  W  Q  K  H  R  R  S  M  S  L  I  R  K  H  L  Q  E  S  S  K  R  I  F  Q  S  E  N  H  L  K  T  S  S  W  L  F  P  N  H  Q  M  L  Y  L  K  L  K  L  V  S  R  C  L  L  I  Q  R  K  I  L  V  M  M  G  N  R  R  K  K  S  L  R  N  L  L  L  F  N  *  R  M  H  Q  I  T  L  Q  T  G  N  R  R  K  K  S  P  W  N  L  L  Q  L  N  H  G  M  H  Q  V  T  E  Q  I  V  E  D  L  L  F  Q  I  L  *  L  P  A  K  V  K  V  L  K  S  I  L  T  G  A  F  L  V  T  S  T  L  M  K  V  *  R  S  Y  L  I  Q  L  C  L  K  M  S  W  L  V  Y  L  W  R  L  P  S  E  E  M  I  R  R  L  V  *  K  N  G  *  A  P  E  A  T  L  Q  M  L  P  I  Q  W  L  N  W  R  S  *  K  R  K  *  K  *  W  K  L  H  Y  K  E  L  L  D  K  L  R :   L  K  L  M  K  *  R  S  *  *  M  R  T  S  N  *  R  L  L  L  R  I  *  E :   G  S  P  V  M  Q  Q  L  N  L  C  E  K  S  T  I  K  K  F  L  L  L  R  G  R :   F  M  L  S  P  K  K  G  I  H  F  A  G  N  I  I  R  R  V  M  L  Q  L  F  S  K  R  R  M  R  *  L  L  K  *  W  L  K  :  V  S  S  F  L  K  S  K  L  P  K  K  L  R  *  E  S  *  G  H  R :   S  E  S  L  K  K  R  R  K  D  Y  I  P  S  L  R :   L  K  R  T  K  *  R  V  *  R  G  T  R  Q  Q  Q  K  N  C  F  M  K  Q  S  K  N  I  K  Q  N  L  Q  L  K  K  N  T  I  L  M  L  *  M  L  Q  K  K  Q  K  L  Y  L  R  H  G  L  T  M  K  L  E  L  N  *  R  V  V  S  E  R  L  K  T  V  K  Q  C  L  F  R  H  L  K  N  *  G  K  H  L  P  E  R  S  S  R :   Q  F  L  K  K  I  C  S  A  E  K  L  K  I  S  R  K  D  T  K :   P  V  N  V  D  V  R  S  *  *  H  K  F  P  N  L  P  D  L  F  S  G  R  *  K  P  C  R :   K  Q  T  P  E  R  L  K  L  G  L  L  L  R  E  P  *  I  H  V  F  R :   K  P  R  Q  K  L  Q  L  Q  K  K  R  S  D  L  L  M  N  A  F  L  K  P  Y  P  E  S  M  F  L  R  L  R :   Y  L  V  L  E  L  S  R  H  S  *  Q  G  P  L  T  K  R  D  S  G  P  Q  R  I  G  K  N  I  L  L  *  R  R  K  L  R  L  T  K  V  V  *  I  S  L  K  R  K  L  K  N  S  E  G  N  T  S  R  K  Y  K  K  H  *  L  I  R  N  S  C  G  R :   S  W  K  G  R  K  L  L  V  W  I  K  K  G  P  L  V  L  L  I  M  C  L  I  R  A  Q  *  *  S  R  N  L  G  *  K  M  :  L  Q  E  V  *  H  A  D  F  R  V  L  A  A  *  V  V  W  R  K  A  I  F  C  K  H  L  W  T  R  L  T  I  Y  L  S  V  E  M  H  *  R  V  I  *  V  H  T  L  *  R  V  *  R  L  H  F  A  R  K  M  G  N  L  R  L  I  C  L  D  W :   H  L  W  K  P  S  V  T  P  L  L  R  S  W  L  K  *  L  Q  S :   V  K  S  Y  V  Q  K  L  P  C  C  L  A  S  E  Q  S  *  M  H  L  G  G  D  T  R  Q  L  L  N  *  W  V  N  V  M  R  S :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F  K :   K  G  K  S  N   </first_frame>
            <second_frame>  R  R  *  R  W  T  L  K  F  T  V  P  A  D  R  F  L  F  R  P  S  Q  N  L  F  I  F  I  A  P  L  P  S  S  K  C   : G  *  R  S  F  P  C  N  L  S  F  G  S  S  Q  K  D  G  V  V  W  W  E  T  *  F  D  E  L  G  S  C  R  C  R  E  *  A  Q  *  E  C  Q  K  H  *  K  K  F  R  H  C  T  W  S  R  G  E  I  *  V  *  *  Q  *  S :   F  R  V  M  A  F  N  Y  G  *  E  G  L  I  *  S  C  H  V  F  Y  G  A  K  K  *  G  D  C  *  R  I  C  R  E  S  *  V  V  K  A  H  L  A  H  R  G  S  S  *  R  F  S  *  D  Y  N  S  T  W  C  G  S  *  R  T  K  R  R  N  N  G  H  Y  *  R  N  *  I  G  S  R  T  Y  *  R  S  K  G  C  *  C  E  T  K  S  N  D  I  C  *  R  R  N  *  G  G  K  S  C  *  C  P  T  E  F  F  Y  G  T  K  F  *  S  G  G  T  K  K  C  Y  W  A  R  *  K  K  S  *  N  *  F  T  G  R  S  I  E  G  Q  *  A  *  S  G  N  I  S  R  N  P  P  K  E  Y  S  R  A  R  I  I  *  K  P  R  V  G  C  F  P  I  I  K  C  F  I  S  N  *  S  W  Y  P  A  A  C  *  F  K  G  K  Y  W  *  *  W  G  T  E  E  R  S  H  *  G  I  S  S  C  S  I  R  G  C  I  K  L  P  Y  R  Q  G  T  E  E  R  S  H  H  G  I  S  F  S  *  I  T  G  C  I  K  *  P  S  R  *  W  K  T  F  C  F  R  F  C  N  C  Q  R  R  *  K  S  *  R  A  F  *  Q  E  L  S  W  *  P  A  H  *  *  R  S  E  E  A  I  *  Y  S  Y  A  *  K  *  V  G  *  Y  T  C  G  G  Y  P  A  R  K  *  S  G  D  W  C  E  R  T  V  E  L  R  K  Q  L  F  R  C  Y  Q  F  S  G  *  T  G  E  A  E  K  G  N  E  N  D  G  N  C  I  T  R  S  C  *  T  S  S   : G  *  S  *  *  N  S  E  V  D  E  *  E  R  A  I  E  G  C  Y  *  G  S  E   : K  E  V  Q  *  C  S  N  *  I  S  A  R  R  V  P  S  K  S  F  C  S  *  E  E   : G  L  C  S  H  Q  R  K  G  Y  T  S  Q  G  T  *  *  E  E  *  C  C  S  S  S  Q  R  E  G  *  D  N  Y  S  S  N  G  *  R :   *  A  A  F  *  K  A  S  C  P  R  S  S  D  E  K  V  K  G  T   : D  Q  R  A  *  R  R  E  E  R  I  T  Y  Q  A  *   : G  *  R  E  Q  S  R  E  Y  K  E  G  Q  G  S  N  R  K  I  A  S  *  N  S  R  K  T  S  S  R  T  C  N  S  K  R  I  L  Y  *  C  F  K  C  C  K  R  S  R  S  F  I  *  G  T  G  *  Q  *  S  *  N  S  T  R  G  S  S  Q  R  G  *  R  P  *  S  N  A  C  S  G  T  *  R  I  K  A  N  T  Y  Q  N  G  A  A   : G  S  F  *  R  R  Y  A  P  Q  R  N  *  R  S  P  E  K  I  P   : S  Q  *  T  S  M  *  G  V  D  N  T  S  S  R  I  Y  Q  T  S  S  Q  A  D  R  S  H  A   : G  N  K  L  Q  K  G  *  S  L  G  C  C  *  E  N  L  E  F  T  S  S   : G  S  R  G  K  S  C  N  F  R  R  K  G  A  I  Y  *  *  T  P  F  S  N  P  I  P  N  Q  C  S  *  G  S   : D  I  L  S  *  S  *  A  D  T  A  N  K  V  P  *  Q  R  E  T  A  G  R  R  E  *  A  R  I  S  C  S  K  G  G  S  *  D  *  R  R  S  C  E  S  A  *  R  G  N  *  R  T  Q  K  E  T  Q  A  G  N  T  R  S  I  N  S  S  G  T  P  A  A   : G  V  G  K  G  E  N  C  S  F  G  S  R  K  G  R  S  F  Y  *  L  C  A  *  S  E  P  N  N  E  A  E  I  W  D  R  K  C :   C  R  K  F  D  T  Q  T  F  E  C  *  Q  L  E  *  Y  G  G  K  L  F  S  A  S  I  F  G  L  V  *  Q  F  I  *  A  *  K  C  I  R  G  *  Y  K  S  I  L  Y  E  E  Y  D  A  C  I  S  P  E  R  W  G  T  C  V  L  Y  V  S  T   : G  I  Y  G  S  H  P  *  L  P  C  *  G  V  G  *  N  D  C  R   : V  *  K  A  T  F  R  S  F  H  A  A  W  H  P  S  R  A  R  C  T  *  E  E  T  L  G  S  S  *  I  D  G  *  T  *  *  G   : V  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L   : K  K  E  K  A  T  </second_frame>
            <third_frame>   D  G  D  G  G  R  *  S  S  P  F  L  Q  I  D  F  F  F  A  L  P  K  I  F  S  F  L  L  L  R  F  Q  V  P  S  V  :  D  E  G  A  F  H  V  I  *  A  L  D  R  V  K  K  M  A  W  F  G  G  K  L  D  L  T  N  L  D  L  A  G  A  V  N  K  L  S  E  S  V  K  N  I  E  K  N  F  D  T  A  L  G  L  E  E  K  S  E  S  S  N  N  E   : A  S  G  L  W  P  S  T  T  D  R  R  A  L  F  D  P  V  M  S  F  M  G  Q  K  S  E  G  T  A  E  E  S  V  E  K  A  E  S  S  K  P  T  L  P  T  G  E  V  V  E  D  S  A  E  T  T  T  R  R  G  V  V  P  K  E  P  K  E  E  T  T  D  I  I  E  E  T  K  S  V  Q  E  P  I  E  E  A  K  D  V  D  A  K  P  N  Q  M  I  S  A  E  E  E  T  E  E  A  R  A  V  D  V  Q  L  N  S  S  T  E  P  S  F  D  Q  E  E  Q  R  S  V  T  G  P  D  E  R  K  A  E  I  N  S  L  A  E  A  S  K  V  N  E  L  D  Q  E  T  S  P  G  I  L  Q  K  N  I  P  E  R  E  S  S  E  N  L  E  L  V  V  S  Q  S  S  N  A  L  S  Q  T  E  V  G  I  P  L  L  V  D  S  K  E  N  T  G  N  D  G  E  Q  K  K  E  V  T  E  E  S  P  P  V  Q  L  E  D  A  S  N  Y  P  T  D  R  E  Q  K  K  E  V  T  M  E  S  P  S  A  E  S  R  D  A  S  S  D  R  A  D  S  G  R  P  S  V  S  D  S  V  T  A  S  E  G  E  S  L  E  E  H  S  N  R  S  F  L  G  D  Q  H  T  D  E  G  L  K  K  L  S  D  T  V  M  P  E  N  E  L  V  S  I  P  V  E  A  T  Q  R  G  N  D  Q  E  T  G  V  K  E  R  L  S  S  G  S  N  S  S  D  V  T  N  S  V  V  E  L  E  K  L  K  K  E  M  K  M  M  E  T  A  L  Q  G  A  A  R  Q  A  Q  :  A  K  A  D  E  I  A  K  L  M  N  E  N  E  Q  L  K  A  V  T  E  D  L  R  :  R  K  S  S  D  A  A  I  E  S  L  R  E  E  Y  H  Q  K  V  S  A  L  E  R  K  :  V  Y  A  L  T  K  E  R  D  T  L  R  R  E  H  N  K  K  S  D  A  A  A  L  L  K  E  K  D  E  I  I  T  Q  V  M  A  E   : G  E  Q  L  S  K  K  Q  A  A  Q  E  A  Q  M  R  K  L  R  A  Q  :  I  R  E  L  E  E  E  K  K  G  L  H  T  K  L  E  :  V  E  E  N  K  V  E  S  I  K  R  D  K  A  A  T  E  K  L  L  H  E  T  V  E  K  H  Q  A  E  L  A  T  Q  K  E  Y  Y  T  N  A  L  N  A  A  K  E  A  E  A  L  S  E  A  R  A  N  N  E  A  R  T  Q  L  E  G  R  L  R  E  A  E  D  R  E  A  M  L  V  Q  A  L  E  E  L  R  Q  T  L  T  R  T  E  Q  Q  :  A  V  F  K  E  D  M  L  R  R  E  I  E  D  L  Q  K  R  Y  Q  :  A  S  E  R  R  C  E  E  L  I  T  Q  V  P  E  S  T  R  P  L  L  R  Q  I  E  A  M  Q  :  E  T  N  S  R  K  A  E  A  W  A  A  V  E  R  T  L  N  S  R  L  Q  :  E  A  E  A  K  A  A  T  S  E  E  K  E  R  S  I  N  E  R  L  S  Q  T  L  S  R  I  N  V  L  E  A  Q  :  I  S  C  L  R  A  E  Q  T  Q  L  T  R  S  L  D  K  E  R  Q  R  A  A  E  N  R  Q  E  Y  L  A  L  K  E  E  A  E  T  N  E  G  R  V  N  Q  L  E  E  E  I  K  E  L  R  R  K  H  K  Q  E  I  Q  E  A  L  T  H  Q  E  L  L  R  Q  :  E  L  E  R  E  K  T  A  R  L  D  Q  E  R  A  A  R  S  T  N  Y  V  P  D  Q  S  P  I  M  K  Q  K  S  G  I  E  N   : V  A  G  S  L  T  R  R  L  S  S  A  S  S  L  S  S  M  E  E  S  Y  F  L  Q  A  S  L  D  S  S  D  N  L  S  E  R  R  N  A  L  E  G  N  I  S  P  Y  F  M  K  S  M  T  P  A  F  R  Q  K  D  G  E  L  A  S  Y  M  S  R  L  :  A  S  M  E  A  I  R  D  S  L  A  E  E  L  V  K  M  T  A  E  :  C  E  K  L  R  S  E  A  S  M  L  P  G  I  R  A  E  L  D  A  L  R  R  R  H  S  A  A  L  E  L  M  G  E  R  D  E  E  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  *  :  K  R  K  K  Q  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61985" stop="61817"/>
                    <exon start="59988" stop="58895"/>
                    <exon start="57994" stop="57923"/>
                    <exon start="56757" stop="56683"/>
                    <exon start="55573" stop="55459"/>
                    <exon start="54404" stop="54343"/>
                    <exon start="54257" stop="54210"/>
                    <exon start="52221" stop="51937"/>
                    <exon start="51859" stop="51800"/>
                    <exon start="51717" stop="51634"/>
                    <exon start="51530" stop="51465"/>
                    <exon start="51393" stop="51295"/>
                    <exon start="51218" stop="51000"/>
                    <exon start="50280" stop="50169"/>
                    <exon start="49854" stop="49643"/>
                    <exon start="49405" stop="49346"/>
                    <exon start="49223" stop="49110"/>
                    <exon start="47545" stop="47471"/>
                    <exon start="47386" stop="47351"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>3054</number_coding_nucleotides>
                  <number_encoded_amino_acids>1018</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALDRVKKMAWFGGKLDLTNLDLAGAVNKLSESVKNIEKNFDTALGLEEKSESSNNEASGLWPSTTDRRALFDPVMSFMGQKSEGTAEESVEKAESSKPTLPTGEVVEDSAETTTRRGVVPKEPKEETTDIIEETKSVQEPIEEAKDVDAKPNQMISAEEETEEARAVDVQLNSSTEPSFDQEEQRSVTGPDERKAEINSLAEASKVNELDQETSPGILQKNIPERESSENLELVVSQSSNALSQTEVGIPLLVDSKENTGNDGEQKKEVTEESPPVQLEDASNYPTDREQKKEVTMESPSAESRDASSDRADSGRPSVSDSVTASEGESLEEHSNRSFLGDQHTDEGLKKLSDTVMPENELVSIPVEATQRGNDQETGVKERLSSGSNSSDVTNSVVELEKLKKEMKMMETALQGAARQAQAKADEIAKLMNENEQLKAVTEDLRRKSSDAAIESLREEYHQKVSALERKVYALTKERDTLRREHNKKSDAAALLKEKDEIITQVMAEGEQLSKKQAAQEAQMRKLRAQIRELEEEKKGLHTKLEVEENKVESIKRDKAATEKLLHETVEKHQAELATQKEYYTNALNAAKEAEALSEARANNEARTQLEGRLREAEDREAMLVQALEELRQTLTRTEQQAVFKEDMLRREIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETNSRKAEAWAAVERTLNSRLQEAEAKAATSEEKERSINERLSQTLSRINVLEAQISCLRAEQTQLTRSLDKERQRAAENRQEYLALKEEAETNEGRVNQLEEEIKELRRKHKQEIQEALTHQELLRQELEREKTARLDQERAARSTNYVPDQSPIMKQKSGIENVAGSLTRRLSSASSLSSMEESYFLQASLDSSDNLSERRNALEGNISPYFMKSMTPAFRQKDGELASYMSRLASMEAIRDSLAEELVKMTAECEKLRSEASMLPGIRAELDALRRRHSAALELMGERDEELEELRADIIDMKEMYREQVNLLVNKIQVLSSSLSAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47372" stop="47123"/>
                    <exon start="46507" stop="46491"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLALKKEKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
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          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
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          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGACGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAGTTCCAAGTGTG : GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG : CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG : GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA : AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG : GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG : GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG : ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG : GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG : GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA : GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAG : GAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG : GAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG : ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG : GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG : TTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG : GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG : TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA : AGAAAAGGAAAAAGCAACAAGATTGGAGC</gDNA_template>
            <first_frame> K  T  V  T  V  D  A  E  V  H  R  S  C  R  S  I  S  F  S  P  F  P  K  S  F  H  F  Y  C  S  A  S  K  F  Q  V  W :   M  K  E  L  S  M  *  F  E  L  W  I  E  S  K  R  W  R  G  L  V  G  N  L  I  *  R  T  W  I  L  P  V  P  *  I  S  S  V  R  V  S  K  T  L  K  K  I  S  T  L  H  L  V  S  R  R  N  L  S  L  V  T  M  K  :  L  Q  G  Y  G  L  Q  L  R  I  G  G  P  Y  L  I  L  S  C  L  L  W  G  K  K  V  R  G  L  L  K  N  L  *  R  K  L  S  R  Q  S  P  P  C  P  Q  G  K  *  L  K  I  Q  L  R  L  Q  L  D  V  V  W  F  L  K  N  Q  K  K  K  Q  R  T  L  L  K  K  L  N  R  F  K  N  L  L  K  K  Q  R  M  L  M  R  N  Q  I  K  *  Y  L  L  K  K  K  L  R  R  Q  E  L  L  M  S  N  *  I  L  L  R  N  Q  V  L  I  R  R  N  K  E  V  L  L  G  Q  M  K  E  K  L  K  L  I  H  W  Q  K  H  R  R  S  M  S  L  I  R  K  H  L  Q  E  S  S  K  R  I  F  Q  S  E  N  H  L  K  T  S  S  W  L  F  P  N  H  Q  M  L  Y  L  K  L  K  L  V  S  R  C  L  L  I  Q  R  K  I  L  V  M  M  G  N  R  R  K  K  S  L  R  N  L  L  L  F  N  *  R  M  H  Q  I  T  L  Q  T  G  N  R  R  K  K  S  P  W  N  L  L  Q  L  N  H  G  M  H  Q  V  T  E  Q  I  V  E  D  L  L  F  Q  I  L  *  L  P  A  K  V  K  V  L  K  S  I  L  T  G  A  F  L  V  T  S  T  L  M  K  V  *  R  S  Y  L  I  Q  L  C  L  K  M  S  W  L  V  Y  L  W  R  L  P  S  E  E  M  I  R  R  L  V  *  K  N  G  *  A  P  E  A  T  L  Q  M  L  P  I  Q  W  L  N  W  R  S  *  K  R  K  *  K  *  W  K  L  H  Y  K  E  L  L  D  K  L  R :   L  K  L  M  K  *  R  S  *  *  M  R  T  S  N  *  R  L  L  L  R  I  *  E :   G  S  P  V  M  Q  Q  L  N  L  C  E  K  S  T  I  K  K  F  L  L  L  R  G  R :   F  M  L  S  P  K  K  G  I  H  F  A  G  N  I  I  R  R  V  M  L  Q  L  F  S  K  R  R  M  R  *  L  L  K  *  W  L  K  :  V  S  S  F  L  K  S  K  L  P  K  K  L  R  *  E  S  *  G  H  R :   S  E  S  L  K  K  R  R  K  D  Y  I  P  S  L  R :   L  K  R  T  K  *  R  V  *  R  G  T  R  Q  Q  Q  K  N  C  F  M  K  Q  S  K  N  I  K  Q  N  L  Q  L  K  K  N  T  I  L  M  L  *  M  L  Q  K  K  Q  K  L  Y  L  R  H  G  L  T  M  K  L  E  L  N  *  R  V  V  S  E  R  L  K  T  V  K  Q  C  L  F  R  H  L  K  N  *  G  K  H  L  P  E  R  S  S  R :   Q  F  L  K  K  I  C  S  A  E  K  L  K  I  S  R  K  D  T  K :   P  V  N  V  D  V  R  S  *  *  H  K  F  P  N  L  P  D  L  F  S  G  R  *  K  P  C  R :   K  Q  T  P  E  R  L  K  L  G  L  L  L  R  E  P  *  I  H  V  F  R :   K  P  R  Q  K  L  Q  L  Q  K  K  R  S  D  L  L  M  N  A  F  L  K  P  Y  P  E  S  M  F  L  R  L  R :   Y  L  V  L  E  L  S  R  H  S  *  Q  G  P  L  T  K  R  D  S  G  P  Q  R  I  G  K  N  I  L  L  *  R  R  K  L  R  L  T  K  V  V  *  I  S  L  K  R  K  L  K  N  S  E  G  N  T  S  R  K  Y  K  K  H  *  L  I  R  N  S  C  G  R :   S  W  K  G  R  K  L  L  V  W  I  K  K  G  P  L  V  L  L  I  M  C  L  I  R  A  Q  *  *  S  R  N  L  G  *  K  M  :  L  Q  E  V  *  H  A  D  F  R  V  L  A  A  *  V  V  W  R  K  A  I  F  C  K  H  L  W  T  R  L  T  I  Y  L  S  V  E  M  H  *  R  V  I  *  V  H  T  L  *  R  V  *  R  L  H  F  A  R  K  M  G  N  L  R  L  I  C  L  D  W :   H  L  W  K  P  S  V  T  P  L  L  R  S  W  L  K  *  L  Q  S :   V  K  S  Y  V  Q  K  L  P  C  C  L  A  S  E  Q  S  *  M  H  L  G  G  D  T  R  Q  L  L  N  *  W  V  N  V  M  R  S :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F  K :   E  K  E  K  A  T  R  L  E  </first_frame>
            <second_frame>  R  R  *  R  W  T  L  K  F  T  V  P  A  D  R  F  L  F  R  P  S  Q  N  L  F  I  F  I  A  P  L  P  S  S  K  C   : G  *  R  S  F  P  C  N  L  S  F  G  S  S  Q  K  D  G  V  V  W  W  E  T  *  F  D  E  L  G  S  C  R  C  R  E  *  A  Q  *  E  C  Q  K  H  *  K  K  F  R  H  C  T  W  S  R  G  E  I  *  V  *  *  Q  *  S :   F  R  V  M  A  F  N  Y  G  *  E  G  L  I  *  S  C  H  V  F  Y  G  A  K  K  *  G  D  C  *  R  I  C  R  E  S  *  V  V  K  A  H  L  A  H  R  G  S  S  *  R  F  S  *  D  Y  N  S  T  W  C  G  S  *  R  T  K  R  R  N  N  G  H  Y  *  R  N  *  I  G  S  R  T  Y  *  R  S  K  G  C  *  C  E  T  K  S  N  D  I  C  *  R  R  N  *  G  G  K  S  C  *  C  P  T  E  F  F  Y  G  T  K  F  *  S  G  G  T  K  K  C  Y  W  A  R  *  K  K  S  *  N  *  F  T  G  R  S  I  E  G  Q  *  A  *  S  G  N  I  S  R  N  P  P  K  E  Y  S  R  A  R  I  I  *  K  P  R  V  G  C  F  P  I  I  K  C  F  I  S  N  *  S  W  Y  P  A  A  C  *  F  K  G  K  Y  W  *  *  W  G  T  E  E  R  S  H  *  G  I  S  S  C  S  I  R  G  C  I  K  L  P  Y  R  Q  G  T  E  E  R  S  H  H  G  I  S  F  S  *  I  T  G  C  I  K  *  P  S  R  *  W  K  T  F  C  F  R  F  C  N  C  Q  R  R  *  K  S  *  R  A  F  *  Q  E  L  S  W  *  P  A  H  *  *  R  S  E  E  A  I  *  Y  S  Y  A  *  K  *  V  G  *  Y  T  C  G  G  Y  P  A  R  K  *  S  G  D  W  C  E  R  T  V  E  L  R  K  Q  L  F  R  C  Y  Q  F  S  G  *  T  G  E  A  E  K  G  N  E  N  D  G  N  C  I  T  R  S  C  *  T  S  S   : G  *  S  *  *  N  S  E  V  D  E  *  E  R  A  I  E  G  C  Y  *  G  S  E   : K  E  V  Q  *  C  S  N  *  I  S  A  R  R  V  P  S  K  S  F  C  S  *  E  E   : G  L  C  S  H  Q  R  K  G  Y  T  S  Q  G  T  *  *  E  E  *  C  C  S  S  S  Q  R  E  G  *  D  N  Y  S  S  N  G  *  R :   *  A  A  F  *  K  A  S  C  P  R  S  S  D  E  K  V  K  G  T   : D  Q  R  A  *  R  R  E  E  R  I  T  Y  Q  A  *   : G  *  R  E  Q  S  R  E  Y  K  E  G  Q  G  S  N  R  K  I  A  S  *  N  S  R  K  T  S  S  R  T  C  N  S  K  R  I  L  Y  *  C  F  K  C  C  K  R  S  R  S  F  I  *  G  T  G  *  Q  *  S  *  N  S  T  R  G  S  S  Q  R  G  *  R  P  *  S  N  A  C  S  G  T  *  R  I  K  A  N  T  Y  Q  N  G  A  A   : G  S  F  *  R  R  Y  A  P  Q  R  N  *  R  S  P  E  K  I  P   : S  Q  *  T  S  M  *  G  V  D  N  T  S  S  R  I  Y  Q  T  S  S  Q  A  D  R  S  H  A   : G  N  K  L  Q  K  G  *  S  L  G  C  C  *  E  N  L  E  F  T  S  S   : G  S  R  G  K  S  C  N  F  R  R  K  G  A  I  Y  *  *  T  P  F  S  N  P  I  P  N  Q  C  S  *  G  S   : D  I  L  S  *  S  *  A  D  T  A  N  K  V  P  *  Q  R  E  T  A  G  R  R  E  *  A  R  I  S  C  S  K  G  G  S  *  D  *  R  R  S  C  E  S  A  *  R  G  N  *  R  T  Q  K  E  T  Q  A  G  N  T  R  S  I  N  S  S  G  T  P  A  A   : G  V  G  K  G  E  N  C  S  F  G  S  R  K  G  R  S  F  Y  *  L  C  A  *  S  E  P  N  N  E  A  E  I  W  D  R  K  C :   C  R  K  F  D  T  Q  T  F  E  C  *  Q  L  E  *  Y  G  G  K  L  F  S  A  S  I  F  G  L  V  *  Q  F  I  *  A  *  K  C  I  R  G  *  Y  K  S  I  L  Y  E  E  Y  D  A  C  I  S  P  E  R  W  G  T  C  V  L  Y  V  S  T   : G  I  Y  G  S  H  P  *  L  P  C  *  G  V  G  *  N  D  C  R   : V  *  K  A  T  F  R  S  F  H  A  A  W  H  P  S  R  A  R  C  T  *  E  E  T  L  G  S  S  *  I  D  G  *  T  *  *  G   : V  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L   : K  K  R  K  K  Q  Q  D  W  S </second_frame>
            <third_frame>   D  G  D  G  G  R  *  S  S  P  F  L  Q  I  D  F  F  F  A  L  P  K  I  F  S  F  L  L  L  R  F  Q  V  P  S  V  :  D  E  G  A  F  H  V  I  *  A  L  D  R  V  K  K  M  A  W  F  G  G  K  L  D  L  T  N  L  D  L  A  G  A  V  N  K  L  S  E  S  V  K  N  I  E  K  N  F  D  T  A  L  G  L  E  E  K  S  E  S  S  N  N  E   : A  S  G  L  W  P  S  T  T  D  R  R  A  L  F  D  P  V  M  S  F  M  G  Q  K  S  E  G  T  A  E  E  S  V  E  K  A  E  S  S  K  P  T  L  P  T  G  E  V  V  E  D  S  A  E  T  T  T  R  R  G  V  V  P  K  E  P  K  E  E  T  T  D  I  I  E  E  T  K  S  V  Q  E  P  I  E  E  A  K  D  V  D  A  K  P  N  Q  M  I  S  A  E  E  E  T  E  E  A  R  A  V  D  V  Q  L  N  S  S  T  E  P  S  F  D  Q  E  E  Q  R  S  V  T  G  P  D  E  R  K  A  E  I  N  S  L  A  E  A  S  K  V  N  E  L  D  Q  E  T  S  P  G  I  L  Q  K  N  I  P  E  R  E  S  S  E  N  L  E  L  V  V  S  Q  S  S  N  A  L  S  Q  T  E  V  G  I  P  L  L  V  D  S  K  E  N  T  G  N  D  G  E  Q  K  K  E  V  T  E  E  S  P  P  V  Q  L  E  D  A  S  N  Y  P  T  D  R  E  Q  K  K  E  V  T  M  E  S  P  S  A  E  S  R  D  A  S  S  D  R  A  D  S  G  R  P  S  V  S  D  S  V  T  A  S  E  G  E  S  L  E  E  H  S  N  R  S  F  L  G  D  Q  H  T  D  E  G  L  K  K  L  S  D  T  V  M  P  E  N  E  L  V  S  I  P  V  E  A  T  Q  R  G  N  D  Q  E  T  G  V  K  E  R  L  S  S  G  S  N  S  S  D  V  T  N  S  V  V  E  L  E  K  L  K  K  E  M  K  M  M  E  T  A  L  Q  G  A  A  R  Q  A  Q  :  A  K  A  D  E  I  A  K  L  M  N  E  N  E  Q  L  K  A  V  T  E  D  L  R  :  R  K  S  S  D  A  A  I  E  S  L  R  E  E  Y  H  Q  K  V  S  A  L  E  R  K  :  V  Y  A  L  T  K  E  R  D  T  L  R  R  E  H  N  K  K  S  D  A  A  A  L  L  K  E  K  D  E  I  I  T  Q  V  M  A  E   : G  E  Q  L  S  K  K  Q  A  A  Q  E  A  Q  M  R  K  L  R  A  Q  :  I  R  E  L  E  E  E  K  K  G  L  H  T  K  L  E  :  V  E  E  N  K  V  E  S  I  K  R  D  K  A  A  T  E  K  L  L  H  E  T  V  E  K  H  Q  A  E  L  A  T  Q  K  E  Y  Y  T  N  A  L  N  A  A  K  E  A  E  A  L  S  E  A  R  A  N  N  E  A  R  T  Q  L  E  G  R  L  R  E  A  E  D  R  E  A  M  L  V  Q  A  L  E  E  L  R  Q  T  L  T  R  T  E  Q  Q  :  A  V  F  K  E  D  M  L  R  R  E  I  E  D  L  Q  K  R  Y  Q  :  A  S  E  R  R  C  E  E  L  I  T  Q  V  P  E  S  T  R  P  L  L  R  Q  I  E  A  M  Q  :  E  T  N  S  R  K  A  E  A  W  A  A  V  E  R  T  L  N  S  R  L  Q  :  E  A  E  A  K  A  A  T  S  E  E  K  E  R  S  I  N  E  R  L  S  Q  T  L  S  R  I  N  V  L  E  A  Q  :  I  S  C  L  R  A  E  Q  T  Q  L  T  R  S  L  D  K  E  R  Q  R  A  A  E  N  R  Q  E  Y  L  A  L  K  E  E  A  E  T  N  E  G  R  V  N  Q  L  E  E  E  I  K  E  L  R  R  K  H  K  Q  E  I  Q  E  A  L  T  H  Q  E  L  L  R  Q  :  E  L  E  R  E  K  T  A  R  L  D  Q  E  R  A  A  R  S  T  N  Y  V  P  D  Q  S  P  I  M  K  Q  K  S  G  I  E  N   : V  A  G  S  L  T  R  R  L  S  S  A  S  S  L  S  S  M  E  E  S  Y  F  L  Q  A  S  L  D  S  S  D  N  L  S  E  R  R  N  A  L  E  G  N  I  S  P  Y  F  M  K  S  M  T  P  A  F  R  Q  K  D  G  E  L  A  S  Y  M  S  R  L  :  A  S  M  E  A  I  R  D  S  L  A  E  E  L  V  K  M  T  A  E  :  C  E  K  L  R  S  E  A  S  M  L  P  G  I  R  A  E  L  D  A  L  R  R  R  H  S  A  A  L  E  L  M  G  E  R  D  E  E  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  *  :  R  K  G  K  S  N  K  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61985" stop="61817"/>
                    <exon start="59988" stop="58895"/>
                    <exon start="57994" stop="57923"/>
                    <exon start="56757" stop="56683"/>
                    <exon start="55573" stop="55459"/>
                    <exon start="54404" stop="54343"/>
                    <exon start="54257" stop="54210"/>
                    <exon start="52221" stop="51937"/>
                    <exon start="51859" stop="51800"/>
                    <exon start="51717" stop="51634"/>
                    <exon start="51530" stop="51465"/>
                    <exon start="51393" stop="51295"/>
                    <exon start="51218" stop="51000"/>
                    <exon start="50280" stop="50169"/>
                    <exon start="49854" stop="49643"/>
                    <exon start="49405" stop="49346"/>
                    <exon start="49223" stop="49110"/>
                    <exon start="47545" stop="47471"/>
                    <exon start="47386" stop="47351"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>3054</number_coding_nucleotides>
                  <number_encoded_amino_acids>1018</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALDRVKKMAWFGGKLDLTNLDLAGAVNKLSESVKNIEKNFDTALGLEEKSESSNNEASGLWPSTTDRRALFDPVMSFMGQKSEGTAEESVEKAESSKPTLPTGEVVEDSAETTTRRGVVPKEPKEETTDIIEETKSVQEPIEEAKDVDAKPNQMISAEEETEEARAVDVQLNSSTEPSFDQEEQRSVTGPDERKAEINSLAEASKVNELDQETSPGILQKNIPERESSENLELVVSQSSNALSQTEVGIPLLVDSKENTGNDGEQKKEVTEESPPVQLEDASNYPTDREQKKEVTMESPSAESRDASSDRADSGRPSVSDSVTASEGESLEEHSNRSFLGDQHTDEGLKKLSDTVMPENELVSIPVEATQRGNDQETGVKERLSSGSNSSDVTNSVVELEKLKKEMKMMETALQGAARQAQAKADEIAKLMNENEQLKAVTEDLRRKSSDAAIESLREEYHQKVSALERKVYALTKERDTLRREHNKKSDAAALLKEKDEIITQVMAEGEQLSKKQAAQEAQMRKLRAQIRELEEEKKGLHTKLEVEENKVESIKRDKAATEKLLHETVEKHQAELATQKEYYTNALNAAKEAEALSEARANNEARTQLEGRLREAEDREAMLVQALEELRQTLTRTEQQAVFKEDMLRREIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETNSRKAEAWAAVERTLNSRLQEAEAKAATSEEKERSINERLSQTLSRINVLEAQISCLRAEQTQLTRSLDKERQRAAENRQEYLALKEEAETNEGRVNQLEEEIKELRRKHKQEIQEALTHQELLRQELEREKTARLDQERAARSTNYVPDQSPIMKQKSGIENVAGSLTRRLSSASSLSSMEESYFLQASLDSSDNLSERRNALEGNISPYFMKSMTPAFRQKDGELASYMSRLASMEAIRDSLAEELVKMTAECEKLRSEASMLPGIRAELDALRRRHSAALELMGERDEELEELRADIIDMKEMYREQVNLLVNKIQVLSSSLSAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
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                  <exon_boundaries>
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                    <exon start="46509" stop="46481"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLALKKRKKQQDWS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
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        </AGS_line>
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          <description PGL_serial="8" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGACGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAGTTCCAAGTGTG : GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG : CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG : GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA : AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG : GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG : GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG : ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG : GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG : GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA : GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAG : GAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG : GAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG : ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG : GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG : GAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG : GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG : TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA : AGATCTTTTGCTATGAATTCAAAGAAGAGAAAATCAAAGGAT</gDNA_template>
            <first_frame> K  T  V  T  V  D  A  E  V  H  R  S  C  R  S  I  S  F  S  P  F  P  K  S  F  H  F  Y  C  S  A  S  K  F  Q  V  W :   M  K  E  L  S  M  *  F  E  L  W  I  E  S  K  R  W  R  G  L  V  G  N  L  I  *  R  T  W  I  L  P  V  P  *  I  S  S  V  R  V  S  K  T  L  K  K  I  S  T  L  H  L  V  S  R  R  N  L  S  L  V  T  M  K  :  L  Q  G  Y  G  L  Q  L  R  I  G  G  P  Y  L  I  L  S  C  L  L  W  G  K  K  V  R  G  L  L  K  N  L  *  R  K  L  S  R  Q  S  P  P  C  P  Q  G  K  *  L  K  I  Q  L  R  L  Q  L  D  V  V  W  F  L  K  N  Q  K  K  K  Q  R  T  L  L  K  K  L  N  R  F  K  N  L  L  K  K  Q  R  M  L  M  R  N  Q  I  K  *  Y  L  L  K  K  K  L  R  R  Q  E  L  L  M  S  N  *  I  L  L  R  N  Q  V  L  I  R  R  N  K  E  V  L  L  G  Q  M  K  E  K  L  K  L  I  H  W  Q  K  H  R  R  S  M  S  L  I  R  K  H  L  Q  E  S  S  K  R  I  F  Q  S  E  N  H  L  K  T  S  S  W  L  F  P  N  H  Q  M  L  Y  L  K  L  K  L  V  S  R  C  L  L  I  Q  R  K  I  L  V  M  M  G  N  R  R  K  K  S  L  R  N  L  L  L  F  N  *  R  M  H  Q  I  T  L  Q  T  G  N  R  R  K  K  S  P  W  N  L  L  Q  L  N  H  G  M  H  Q  V  T  E  Q  I  V  E  D  L  L  F  Q  I  L  *  L  P  A  K  V  K  V  L  K  S  I  L  T  G  A  F  L  V  T  S  T  L  M  K  V  *  R  S  Y  L  I  Q  L  C  L  K  M  S  W  L  V  Y  L  W  R  L  P  S  E  E  M  I  R  R  L  V  *  K  N  G  *  A  P  E  A  T  L  Q  M  L  P  I  Q  W  L  N  W  R  S  *  K  R  K  *  K  *  W  K  L  H  Y  K  E  L  L  D  K  L  R :   L  K  L  M  K  *  R  S  *  *  M  R  T  S  N  *  R  L  L  L  R  I  *  E :   G  S  P  V  M  Q  Q  L  N  L  C  E  K  S  T  I  K  K  F  L  L  L  R  G  R :   F  M  L  S  P  K  K  G  I  H  F  A  G  N  I  I  R  R  V  M  L  Q  L  F  S  K  R  R  M  R  *  L  L  K  *  W  L  K  :  V  S  S  F  L  K  S  K  L  P  K  K  L  R  *  E  S  *  G  H  R :   S  E  S  L  K  K  R  R  K  D  Y  I  P  S  L  R :   L  K  R  T  K  *  R  V  *  R  G  T  R  Q  Q  Q  K  N  C  F  M  K  Q  S  K  N  I  K  Q  N  L  Q  L  K  K  N  T  I  L  M  L  *  M  L  Q  K  K  Q  K  L  Y  L  R  H  G  L  T  M  K  L  E  L  N  *  R  V  V  S  E  R  L  K  T  V  K  Q  C  L  F  R  H  L  K  N  *  G  K  H  L  P  E  R  S  S  R :   Q  F  L  K  K  I  C  S  A  E  K  L  K  I  S  R  K  D  T  K :   P  V  N  V  D  V  R  S  *  *  H  K  F  P  N  L  P  D  L  F  S  G  R  *  K  P  C  R :   K  Q  T  P  E  R  L  K  L  G  L  L  L  R  E  P  *  I  H  V  F  R :   K  P  R  Q  K  L  Q  L  Q  K  K  R  S  D  L  L  M  N  A  F  L  K  P  Y  P  E  S  M  F  L  R  L  R :   Y  L  V  L  E  L  S  R  H  S  *  Q  G  P  L  T  K  R  D  S  G  P  Q  R  I  G  K  N  I  L  L  *  R  R  K  L  R  L  T  K  V  V  *  I  S  L  K  R  K  L  K  N  S  E  G  N  T  S  R  K  Y  K  K  H  *  L  I  R  N  S  C  G  R :   S  W  K  G  R  K  L  L  V  W  I  K  K  G  P  L  V  L  L  I  M  C  L  I  R  A  Q  *  *  S  R  N  L  G  *  K  M  :  E  V  *  H  A  D  F  R  V  L  A  A  *  V  V  W  R  K  A  I  F  C  K  H  L  W  T  R  L  T  I  Y  L  S  V  E  M  H  *  R  V  I  *  V  H  T  L  *  R  V  *  R  L  H  F  A  R  K  M  G  N  L  R  L  I  C  L  D  W :   H  L  W  K  P  S  V  T  P  L  L  R  S  W  L  K  *  L  Q  S :   V  K  S  Y  V  Q  K  L  P  C  C  L  A  S  E  Q  S  *  M  H  L  G  G  D  T  R  Q  L  L  N  *  W  V  N  V  M  R  S :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F  K :   D  L  L  L  *  I  Q  R  R  E  N  Q  R   </first_frame>
            <second_frame>  R  R  *  R  W  T  L  K  F  T  V  P  A  D  R  F  L  F  R  P  S  Q  N  L  F  I  F  I  A  P  L  P  S  S  K  C   : G  *  R  S  F  P  C  N  L  S  F  G  S  S  Q  K  D  G  V  V  W  W  E  T  *  F  D  E  L  G  S  C  R  C  R  E  *  A  Q  *  E  C  Q  K  H  *  K  K  F  R  H  C  T  W  S  R  G  E  I  *  V  *  *  Q  *  S :   F  R  V  M  A  F  N  Y  G  *  E  G  L  I  *  S  C  H  V  F  Y  G  A  K  K  *  G  D  C  *  R  I  C  R  E  S  *  V  V  K  A  H  L  A  H  R  G  S  S  *  R  F  S  *  D  Y  N  S  T  W  C  G  S  *  R  T  K  R  R  N  N  G  H  Y  *  R  N  *  I  G  S  R  T  Y  *  R  S  K  G  C  *  C  E  T  K  S  N  D  I  C  *  R  R  N  *  G  G  K  S  C  *  C  P  T  E  F  F  Y  G  T  K  F  *  S  G  G  T  K  K  C  Y  W  A  R  *  K  K  S  *  N  *  F  T  G  R  S  I  E  G  Q  *  A  *  S  G  N  I  S  R  N  P  P  K  E  Y  S  R  A  R  I  I  *  K  P  R  V  G  C  F  P  I  I  K  C  F  I  S  N  *  S  W  Y  P  A  A  C  *  F  K  G  K  Y  W  *  *  W  G  T  E  E  R  S  H  *  G  I  S  S  C  S  I  R  G  C  I  K  L  P  Y  R  Q  G  T  E  E  R  S  H  H  G  I  S  F  S  *  I  T  G  C  I  K  *  P  S  R  *  W  K  T  F  C  F  R  F  C  N  C  Q  R  R  *  K  S  *  R  A  F  *  Q  E  L  S  W  *  P  A  H  *  *  R  S  E  E  A  I  *  Y  S  Y  A  *  K  *  V  G  *  Y  T  C  G  G  Y  P  A  R  K  *  S  G  D  W  C  E  R  T  V  E  L  R  K  Q  L  F  R  C  Y  Q  F  S  G  *  T  G  E  A  E  K  G  N  E  N  D  G  N  C  I  T  R  S  C  *  T  S  S   : G  *  S  *  *  N  S  E  V  D  E  *  E  R  A  I  E  G  C  Y  *  G  S  E   : K  E  V  Q  *  C  S  N  *  I  S  A  R  R  V  P  S  K  S  F  C  S  *  E  E   : G  L  C  S  H  Q  R  K  G  Y  T  S  Q  G  T  *  *  E  E  *  C  C  S  S  S  Q  R  E  G  *  D  N  Y  S  S  N  G  *  R :   *  A  A  F  *  K  A  S  C  P  R  S  S  D  E  K  V  K  G  T   : D  Q  R  A  *  R  R  E  E  R  I  T  Y  Q  A  *   : G  *  R  E  Q  S  R  E  Y  K  E  G  Q  G  S  N  R  K  I  A  S  *  N  S  R  K  T  S  S  R  T  C  N  S  K  R  I  L  Y  *  C  F  K  C  C  K  R  S  R  S  F  I  *  G  T  G  *  Q  *  S  *  N  S  T  R  G  S  S  Q  R  G  *  R  P  *  S  N  A  C  S  G  T  *  R  I  K  A  N  T  Y  Q  N  G  A  A   : G  S  F  *  R  R  Y  A  P  Q  R  N  *  R  S  P  E  K  I  P   : S  Q  *  T  S  M  *  G  V  D  N  T  S  S  R  I  Y  Q  T  S  S  Q  A  D  R  S  H  A   : G  N  K  L  Q  K  G  *  S  L  G  C  C  *  E  N  L  E  F  T  S  S   : G  S  R  G  K  S  C  N  F  R  R  K  G  A  I  Y  *  *  T  P  F  S  N  P  I  P  N  Q  C  S  *  G  S   : D  I  L  S  *  S  *  A  D  T  A  N  K  V  P  *  Q  R  E  T  A  G  R  R  E  *  A  R  I  S  C  S  K  G  G  S  *  D  *  R  R  S  C  E  S  A  *  R  G  N  *  R  T  Q  K  E  T  Q  A  G  N  T  R  S  I  N  S  S  G  T  P  A  A   : G  V  G  K  G  E  N  C  S  F  G  S  R  K  G  R  S  F  Y  *  L  C  A  *  S  E  P  N  N  E  A  E  I  W  D  R  K  W :   K  F  D  T  Q  T  F  E  C  *  Q  L  E  *  Y  G  G  K  L  F  S  A  S  I  F  G  L  V  *  Q  F  I  *  A  *  K  C  I  R  G  *  Y  K  S  I  L  Y  E  E  Y  D  A  C  I  S  P  E  R  W  G  T  C  V  L  Y  V  S  T   : G  I  Y  G  S  H  P  *  L  P  C  *  G  V  G  *  N  D  C  R   : V  *  K  A  T  F  R  S  F  H  A  A  W  H  P  S  R  A  R  C  T  *  E  E  T  L  G  S  S  *  I  D  G  *  T  *  *  G   : V  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L   : K  I  F  C  Y  E  F  K  E  E  K  I  K  G  </second_frame>
            <third_frame>   D  G  D  G  G  R  *  S  S  P  F  L  Q  I  D  F  F  F  A  L  P  K  I  F  S  F  L  L  L  R  F  Q  V  P  S  V  :  D  E  G  A  F  H  V  I  *  A  L  D  R  V  K  K  M  A  W  F  G  G  K  L  D  L  T  N  L  D  L  A  G  A  V  N  K  L  S  E  S  V  K  N  I  E  K  N  F  D  T  A  L  G  L  E  E  K  S  E  S  S  N  N  E   : A  S  G  L  W  P  S  T  T  D  R  R  A  L  F  D  P  V  M  S  F  M  G  Q  K  S  E  G  T  A  E  E  S  V  E  K  A  E  S  S  K  P  T  L  P  T  G  E  V  V  E  D  S  A  E  T  T  T  R  R  G  V  V  P  K  E  P  K  E  E  T  T  D  I  I  E  E  T  K  S  V  Q  E  P  I  E  E  A  K  D  V  D  A  K  P  N  Q  M  I  S  A  E  E  E  T  E  E  A  R  A  V  D  V  Q  L  N  S  S  T  E  P  S  F  D  Q  E  E  Q  R  S  V  T  G  P  D  E  R  K  A  E  I  N  S  L  A  E  A  S  K  V  N  E  L  D  Q  E  T  S  P  G  I  L  Q  K  N  I  P  E  R  E  S  S  E  N  L  E  L  V  V  S  Q  S  S  N  A  L  S  Q  T  E  V  G  I  P  L  L  V  D  S  K  E  N  T  G  N  D  G  E  Q  K  K  E  V  T  E  E  S  P  P  V  Q  L  E  D  A  S  N  Y  P  T  D  R  E  Q  K  K  E  V  T  M  E  S  P  S  A  E  S  R  D  A  S  S  D  R  A  D  S  G  R  P  S  V  S  D  S  V  T  A  S  E  G  E  S  L  E  E  H  S  N  R  S  F  L  G  D  Q  H  T  D  E  G  L  K  K  L  S  D  T  V  M  P  E  N  E  L  V  S  I  P  V  E  A  T  Q  R  G  N  D  Q  E  T  G  V  K  E  R  L  S  S  G  S  N  S  S  D  V  T  N  S  V  V  E  L  E  K  L  K  K  E  M  K  M  M  E  T  A  L  Q  G  A  A  R  Q  A  Q  :  A  K  A  D  E  I  A  K  L  M  N  E  N  E  Q  L  K  A  V  T  E  D  L  R  :  R  K  S  S  D  A  A  I  E  S  L  R  E  E  Y  H  Q  K  V  S  A  L  E  R  K  :  V  Y  A  L  T  K  E  R  D  T  L  R  R  E  H  N  K  K  S  D  A  A  A  L  L  K  E  K  D  E  I  I  T  Q  V  M  A  E   : G  E  Q  L  S  K  K  Q  A  A  Q  E  A  Q  M  R  K  L  R  A  Q  :  I  R  E  L  E  E  E  K  K  G  L  H  T  K  L  E  :  V  E  E  N  K  V  E  S  I  K  R  D  K  A  A  T  E  K  L  L  H  E  T  V  E  K  H  Q  A  E  L  A  T  Q  K  E  Y  Y  T  N  A  L  N  A  A  K  E  A  E  A  L  S  E  A  R  A  N  N  E  A  R  T  Q  L  E  G  R  L  R  E  A  E  D  R  E  A  M  L  V  Q  A  L  E  E  L  R  Q  T  L  T  R  T  E  Q  Q  :  A  V  F  K  E  D  M  L  R  R  E  I  E  D  L  Q  K  R  Y  Q  :  A  S  E  R  R  C  E  E  L  I  T  Q  V  P  E  S  T  R  P  L  L  R  Q  I  E  A  M  Q  :  E  T  N  S  R  K  A  E  A  W  A  A  V  E  R  T  L  N  S  R  L  Q  :  E  A  E  A  K  A  A  T  S  E  E  K  E  R  S  I  N  E  R  L  S  Q  T  L  S  R  I  N  V  L  E  A  Q  :  I  S  C  L  R  A  E  Q  T  Q  L  T  R  S  L  D  K  E  R  Q  R  A  A  E  N  R  Q  E  Y  L  A  L  K  E  E  A  E  T  N  E  G  R  V  N  Q  L  E  E  E  I  K  E  L  R  R  K  H  K  Q  E  I  Q  E  A  L  T  H  Q  E  L  L  R  Q  :  E  L  E  R  E  K  T  A  R  L  D  Q  E  R  A  A  R  S  T  N  Y  V  P  D  Q  S  P  I  M  K  Q  K  S  G  I  E  N   : G  S  L  T  R  R  L  S  S  A  S  S  L  S  S  M  E  E  S  Y  F  L  Q  A  S  L  D  S  S  D  N  L  S  E  R  R  N  A  L  E  G  N  I  S  P  Y  F  M  K  S  M  T  P  A  F  R  Q  K  D  G  E  L  A  S  Y  M  S  R  L  :  A  S  M  E  A  I  R  D  S  L  A  E  E  L  V  K  M  T  A  E  :  C  E  K  L  R  S  E  A  S  M  L  P  G  I  R  A  E  L  D  A  L  R  R  R  H  S  A  A  L  E  L  M  G  E  R  D  E  E  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  *  :  R  S  F  A  M  N  S  K  K  R  K  S  K  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61985" stop="61817"/>
                    <exon start="59988" stop="58895"/>
                    <exon start="57994" stop="57923"/>
                    <exon start="56757" stop="56683"/>
                    <exon start="55573" stop="55459"/>
                    <exon start="54404" stop="54343"/>
                    <exon start="54257" stop="54210"/>
                    <exon start="52221" stop="51937"/>
                    <exon start="51859" stop="51800"/>
                    <exon start="51717" stop="51634"/>
                    <exon start="51530" stop="51465"/>
                    <exon start="51393" stop="51295"/>
                    <exon start="51218" stop="51000"/>
                    <exon start="50280" stop="50169"/>
                    <exon start="49848" stop="49643"/>
                    <exon start="49405" stop="49346"/>
                    <exon start="49223" stop="49110"/>
                    <exon start="47545" stop="47471"/>
                    <exon start="47386" stop="47351"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>3048</number_coding_nucleotides>
                  <number_encoded_amino_acids>1016</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALDRVKKMAWFGGKLDLTNLDLAGAVNKLSESVKNIEKNFDTALGLEEKSESSNNEASGLWPSTTDRRALFDPVMSFMGQKSEGTAEESVEKAESSKPTLPTGEVVEDSAETTTRRGVVPKEPKEETTDIIEETKSVQEPIEEAKDVDAKPNQMISAEEETEEARAVDVQLNSSTEPSFDQEEQRSVTGPDERKAEINSLAEASKVNELDQETSPGILQKNIPERESSENLELVVSQSSNALSQTEVGIPLLVDSKENTGNDGEQKKEVTEESPPVQLEDASNYPTDREQKKEVTMESPSAESRDASSDRADSGRPSVSDSVTASEGESLEEHSNRSFLGDQHTDEGLKKLSDTVMPENELVSIPVEATQRGNDQETGVKERLSSGSNSSDVTNSVVELEKLKKEMKMMETALQGAARQAQAKADEIAKLMNENEQLKAVTEDLRRKSSDAAIESLREEYHQKVSALERKVYALTKERDTLRREHNKKSDAAALLKEKDEIITQVMAEGEQLSKKQAAQEAQMRKLRAQIRELEEEKKGLHTKLEVEENKVESIKRDKAATEKLLHETVEKHQAELATQKEYYTNALNAAKEAEALSEARANNEARTQLEGRLREAEDREAMLVQALEELRQTLTRTEQQAVFKEDMLRREIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETNSRKAEAWAAVERTLNSRLQEAEAKAATSEEKERSINERLSQTLSRINVLEAQISCLRAEQTQLTRSLDKERQRAAENRQEYLALKEEAETNEGRVNQLEEEIKELRRKHKQEIQEALTHQELLRQELEREKTARLDQERAARSTNYVPDQSPIMKQKSGIENGSLTRRLSSASSLSSMEESYFLQASLDSSDNLSERRNALEGNISPYFMKSMTPAFRQKDGELASYMSRLASMEAIRDSLAEELVKMTAECEKLRSEASMLPGIRAELDALRRRHSAALELMGERDEELEELRADIIDMKEMYREQVNLLVNKIQVLSSSLSAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
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                <orf_info>
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                    <exon start="47372" stop="47123"/>
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                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLALKIFCYEFKEEKIKG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
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          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
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          <description PGL_serial="8" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACGGTGACGGTGGACGCTGAAGTTCACCGTTCCTGCAGATCGATTTCTTTTTCGCCCTTCCCAAAATCTTTTCATTTTTATTGCTCCGCTTCCAAG : GATGAAGGAGCTTTCCATGTAATTTGAGCTTTGGATCGAGTCAAAAAGATGGCGTGGTTTGGTGGGAAACTTGATTTGACGAACTTGGATCTTGCCGGTGCCGTGAATAAGCTCAGTGAGAGTGTCAAAAACATTGAAAAAAATTTCGACACTGCACTTGGTCTCGAGGAGAAATCTGAGTCTAGTAACAATGAAG : CTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG : GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA : AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG : GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG : GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG : ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG : GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG : GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA : GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAG : GAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG : GAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG : ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG : GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG : TTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG : GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG : TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGT</gDNA_template>
            <first_frame> R  R  *  R  W  T  L  K  F  T  V  P  A  D  R  F  L  F  R  P  S  Q  N  L  F  I  F  I  A  P  L  P  R :   M  K  E  L  S  M  *  F  E  L  W  I  E  S  K  R  W  R  G  L  V  G  N  L  I  *  R  T  W  I  L  P  V  P  *  I  S  S  V  R  V  S  K  T  L  K  K  I  S  T  L  H  L  V  S  R  R  N  L  S  L  V  T  M  K  :  L  Q  G  Y  G  L  Q  L  R  I  G  G  P  Y  L  I  L  S  C  L  L  W  G  K  K  V  R  G  L  L  K  N  L  *  R  K  L  S  R  Q  S  P  P  C  P  Q  G  K  *  L  K  I  Q  L  R  L  Q  L  D  V  V  W  F  L  K  N  Q  K  K  K  Q  R  T  L  L  K  K  L  N  R  F  K  N  L  L  K  K  Q  R  M  L  M  R  N  Q  I  K  *  Y  L  L  K  K  K  L  R  R  Q  E  L  L  M  S  N  *  I  L  L  R  N  Q  V  L  I  R  R  N  K  E  V  L  L  G  Q  M  K  E  K  L  K  L  I  H  W  Q  K  H  R  R  S  M  S  L  I  R  K  H  L  Q  E  S  S  K  R  I  F  Q  S  E  N  H  L  K  T  S  S  W  L  F  P  N  H  Q  M  L  Y  L  K  L  K  L  V  S  R  C  L  L  I  Q  R  K  I  L  V  M  M  G  N  R  R  K  K  S  L  R  N  L  L  L  F  N  *  R  M  H  Q  I  T  L  Q  T  G  N  R  R  K  K  S  P  W  N  L  L  Q  L  N  H  G  M  H  Q  V  T  E  Q  I  V  E  D  L  L  F  Q  I  L  *  L  P  A  K  V  K  V  L  K  S  I  L  T  G  A  F  L  V  T  S  T  L  M  K  V  *  R  S  Y  L  I  Q  L  C  L  K  M  S  W  L  V  Y  L  W  R  L  P  S  E  E  M  I  R  R  L  V  *  K  N  G  *  A  P  E  A  T  L  Q  M  L  P  I  Q  W  L  N  W  R  S  *  K  R  K  *  K  *  W  K  L  H  Y  K  E  L  L  D  K  L  R :   L  K  L  M  K  *  R  S  *  *  M  R  T  S  N  *  R  L  L  L  R  I  *  E :   G  S  P  V  M  Q  Q  L  N  L  C  E  K  S  T  I  K  K  F  L  L  L  R  G  R :   F  M  L  S  P  K  K  G  I  H  F  A  G  N  I  I  R  R  V  M  L  Q  L  F  S  K  R  R  M  R  *  L  L  K  *  W  L  K  :  V  S  S  F  L  K  S  K  L  P  K  K  L  R  *  E  S  *  G  H  R :   S  E  S  L  K  K  R  R  K  D  Y  I  P  S  L  R :   L  K  R  T  K  *  R  V  *  R  G  T  R  Q  Q  Q  K  N  C  F  M  K  Q  S  K  N  I  K  Q  N  L  Q  L  K  K  N  T  I  L  M  L  *  M  L  Q  K  K  Q  K  L  Y  L  R  H  G  L  T  M  K  L  E  L  N  *  R  V  V  S  E  R  L  K  T  V  K  Q  C  L  F  R  H  L  K  N  *  G  K  H  L  P  E  R  S  S  R :   Q  F  L  K  K  I  C  S  A  E  K  L  K  I  S  R  K  D  T  K :   P  V  N  V  D  V  R  S  *  *  H  K  F  P  N  L  P  D  L  F  S  G  R  *  K  P  C  R :   K  Q  T  P  E  R  L  K  L  G  L  L  L  R  E  P  *  I  H  V  F  R :   K  P  R  Q  K  L  Q  L  Q  K  K  R  S  D  L  L  M  N  A  F  L  K  P  Y  P  E  S  M  F  L  R  L  R :   Y  L  V  L  E  L  S  R  H  S  *  Q  G  P  L  T  K  R  D  S  G  P  Q  R  I  G  K  N  I  L  L  *  R  R  K  L  R  L  T  K  V  V  *  I  S  L  K  R  K  L  K  N  S  E  G  N  T  S  R  K  Y  K  K  H  *  L  I  R  N  S  C  G  R :   S  W  K  G  R  K  L  L  V  W  I  K  K  G  P  L  V  L  L  I  M  C  L  I  R  A  Q  *  *  S  R  N  L  G  *  K  M  :  L  Q  E  V  *  H  A  D  F  R  V  L  A  A  *  V  V  W  R  K  A  I  F  C  K  H  L  W  T  R  L  T  I  Y  L  S  V  E  M  H  *  R  V  I  *  V  H  T  L  *  R  V  *  R  L  H  F  A  R  K  M  G  N  L  R  L  I  C  L  D  W :   H  L  W  K  P  S  V  T  P  L  L  R  S  W  L  K  *  L  Q  S :   V  K  S  Y  V  Q  K  L  P  C  C  L  A  S  E  Q  S  *  M  H  L  G  G  D  T  R  Q  L  L  N  *  W  V  N  V  M  R  S :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F  K  L  C  F  Q  V  Q  L  K  L  L  K  W  </first_frame>
            <second_frame>  D  G  D  G  G  R  *  S  S  P  F  L  Q  I  D  F  F  F  A  L  P  K  I  F  S  F  L  L  L  R  F  Q   : G  *  R  S  F  P  C  N  L  S  F  G  S  S  Q  K  D  G  V  V  W  W  E  T  *  F  D  E  L  G  S  C  R  C  R  E  *  A  Q  *  E  C  Q  K  H  *  K  K  F  R  H  C  T  W  S  R  G  E  I  *  V  *  *  Q  *  S :   F  R  V  M  A  F  N  Y  G  *  E  G  L  I  *  S  C  H  V  F  Y  G  A  K  K  *  G  D  C  *  R  I  C  R  E  S  *  V  V  K  A  H  L  A  H  R  G  S  S  *  R  F  S  *  D  Y  N  S  T  W  C  G  S  *  R  T  K  R  R  N  N  G  H  Y  *  R  N  *  I  G  S  R  T  Y  *  R  S  K  G  C  *  C  E  T  K  S  N  D  I  C  *  R  R  N  *  G  G  K  S  C  *  C  P  T  E  F  F  Y  G  T  K  F  *  S  G  G  T  K  K  C  Y  W  A  R  *  K  K  S  *  N  *  F  T  G  R  S  I  E  G  Q  *  A  *  S  G  N  I  S  R  N  P  P  K  E  Y  S  R  A  R  I  I  *  K  P  R  V  G  C  F  P  I  I  K  C  F  I  S  N  *  S  W  Y  P  A  A  C  *  F  K  G  K  Y  W  *  *  W  G  T  E  E  R  S  H  *  G  I  S  S  C  S  I  R  G  C  I  K  L  P  Y  R  Q  G  T  E  E  R  S  H  H  G  I  S  F  S  *  I  T  G  C  I  K  *  P  S  R  *  W  K  T  F  C  F  R  F  C  N  C  Q  R  R  *  K  S  *  R  A  F  *  Q  E  L  S  W  *  P  A  H  *  *  R  S  E  E  A  I  *  Y  S  Y  A  *  K  *  V  G  *  Y  T  C  G  G  Y  P  A  R  K  *  S  G  D  W  C  E  R  T  V  E  L  R  K  Q  L  F  R  C  Y  Q  F  S  G  *  T  G  E  A  E  K  G  N  E  N  D  G  N  C  I  T  R  S  C  *  T  S  S   : G  *  S  *  *  N  S  E  V  D  E  *  E  R  A  I  E  G  C  Y  *  G  S  E   : K  E  V  Q  *  C  S  N  *  I  S  A  R  R  V  P  S  K  S  F  C  S  *  E  E   : G  L  C  S  H  Q  R  K  G  Y  T  S  Q  G  T  *  *  E  E  *  C  C  S  S  S  Q  R  E  G  *  D  N  Y  S  S  N  G  *  R :   *  A  A  F  *  K  A  S  C  P  R  S  S  D  E  K  V  K  G  T   : D  Q  R  A  *  R  R  E  E  R  I  T  Y  Q  A  *   : G  *  R  E  Q  S  R  E  Y  K  E  G  Q  G  S  N  R  K  I  A  S  *  N  S  R  K  T  S  S  R  T  C  N  S  K  R  I  L  Y  *  C  F  K  C  C  K  R  S  R  S  F  I  *  G  T  G  *  Q  *  S  *  N  S  T  R  G  S  S  Q  R  G  *  R  P  *  S  N  A  C  S  G  T  *  R  I  K  A  N  T  Y  Q  N  G  A  A   : G  S  F  *  R  R  Y  A  P  Q  R  N  *  R  S  P  E  K  I  P   : S  Q  *  T  S  M  *  G  V  D  N  T  S  S  R  I  Y  Q  T  S  S  Q  A  D  R  S  H  A   : G  N  K  L  Q  K  G  *  S  L  G  C  C  *  E  N  L  E  F  T  S  S   : G  S  R  G  K  S  C  N  F  R  R  K  G  A  I  Y  *  *  T  P  F  S  N  P  I  P  N  Q  C  S  *  G  S   : D  I  L  S  *  S  *  A  D  T  A  N  K  V  P  *  Q  R  E  T  A  G  R  R  E  *  A  R  I  S  C  S  K  G  G  S  *  D  *  R  R  S  C  E  S  A  *  R  G  N  *  R  T  Q  K  E  T  Q  A  G  N  T  R  S  I  N  S  S  G  T  P  A  A   : G  V  G  K  G  E  N  C  S  F  G  S  R  K  G  R  S  F  Y  *  L  C  A  *  S  E  P  N  N  E  A  E  I  W  D  R  K  C :   C  R  K  F  D  T  Q  T  F  E  C  *  Q  L  E  *  Y  G  G  K  L  F  S  A  S  I  F  G  L  V  *  Q  F  I  *  A  *  K  C  I  R  G  *  Y  K  S  I  L  Y  E  E  Y  D  A  C  I  S  P  E  R  W  G  T  C  V  L  Y  V  S  T   : G  I  Y  G  S  H  P  *  L  P  C  *  G  V  G  *  N  D  C  R   : V  *  K  A  T  F  R  S  F  H  A  A  W  H  P  S  R  A  R  C  T  *  E  E  T  L  G  S  S  *  I  D  G  *  T  *  *  G   : V  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L  S  F  V  S  K  C  N  *  S  Y  *  N  G </second_frame>
            <third_frame>   T  V  T  V  D  A  E  V  H  R  S  C  R  S  I  S  F  S  P  F  P  K  S  F  H  F  Y  C  S  A  S  K  :  D  E  G  A  F  H  V  I  *  A  L  D  R  V  K  K  M  A  W  F  G  G  K  L  D  L  T  N  L  D  L  A  G  A  V  N  K  L  S  E  S  V  K  N  I  E  K  N  F  D  T  A  L  G  L  E  E  K  S  E  S  S  N  N  E   : A  S  G  L  W  P  S  T  T  D  R  R  A  L  F  D  P  V  M  S  F  M  G  Q  K  S  E  G  T  A  E  E  S  V  E  K  A  E  S  S  K  P  T  L  P  T  G  E  V  V  E  D  S  A  E  T  T  T  R  R  G  V  V  P  K  E  P  K  E  E  T  T  D  I  I  E  E  T  K  S  V  Q  E  P  I  E  E  A  K  D  V  D  A  K  P  N  Q  M  I  S  A  E  E  E  T  E  E  A  R  A  V  D  V  Q  L  N  S  S  T  E  P  S  F  D  Q  E  E  Q  R  S  V  T  G  P  D  E  R  K  A  E  I  N  S  L  A  E  A  S  K  V  N  E  L  D  Q  E  T  S  P  G  I  L  Q  K  N  I  P  E  R  E  S  S  E  N  L  E  L  V  V  S  Q  S  S  N  A  L  S  Q  T  E  V  G  I  P  L  L  V  D  S  K  E  N  T  G  N  D  G  E  Q  K  K  E  V  T  E  E  S  P  P  V  Q  L  E  D  A  S  N  Y  P  T  D  R  E  Q  K  K  E  V  T  M  E  S  P  S  A  E  S  R  D  A  S  S  D  R  A  D  S  G  R  P  S  V  S  D  S  V  T  A  S  E  G  E  S  L  E  E  H  S  N  R  S  F  L  G  D  Q  H  T  D  E  G  L  K  K  L  S  D  T  V  M  P  E  N  E  L  V  S  I  P  V  E  A  T  Q  R  G  N  D  Q  E  T  G  V  K  E  R  L  S  S  G  S  N  S  S  D  V  T  N  S  V  V  E  L  E  K  L  K  K  E  M  K  M  M  E  T  A  L  Q  G  A  A  R  Q  A  Q  :  A  K  A  D  E  I  A  K  L  M  N  E  N  E  Q  L  K  A  V  T  E  D  L  R  :  R  K  S  S  D  A  A  I  E  S  L  R  E  E  Y  H  Q  K  V  S  A  L  E  R  K  :  V  Y  A  L  T  K  E  R  D  T  L  R  R  E  H  N  K  K  S  D  A  A  A  L  L  K  E  K  D  E  I  I  T  Q  V  M  A  E   : G  E  Q  L  S  K  K  Q  A  A  Q  E  A  Q  M  R  K  L  R  A  Q  :  I  R  E  L  E  E  E  K  K  G  L  H  T  K  L  E  :  V  E  E  N  K  V  E  S  I  K  R  D  K  A  A  T  E  K  L  L  H  E  T  V  E  K  H  Q  A  E  L  A  T  Q  K  E  Y  Y  T  N  A  L  N  A  A  K  E  A  E  A  L  S  E  A  R  A  N  N  E  A  R  T  Q  L  E  G  R  L  R  E  A  E  D  R  E  A  M  L  V  Q  A  L  E  E  L  R  Q  T  L  T  R  T  E  Q  Q  :  A  V  F  K  E  D  M  L  R  R  E  I  E  D  L  Q  K  R  Y  Q  :  A  S  E  R  R  C  E  E  L  I  T  Q  V  P  E  S  T  R  P  L  L  R  Q  I  E  A  M  Q  :  E  T  N  S  R  K  A  E  A  W  A  A  V  E  R  T  L  N  S  R  L  Q  :  E  A  E  A  K  A  A  T  S  E  E  K  E  R  S  I  N  E  R  L  S  Q  T  L  S  R  I  N  V  L  E  A  Q  :  I  S  C  L  R  A  E  Q  T  Q  L  T  R  S  L  D  K  E  R  Q  R  A  A  E  N  R  Q  E  Y  L  A  L  K  E  E  A  E  T  N  E  G  R  V  N  Q  L  E  E  E  I  K  E  L  R  R  K  H  K  Q  E  I  Q  E  A  L  T  H  Q  E  L  L  R  Q  :  E  L  E  R  E  K  T  A  R  L  D  Q  E  R  A  A  R  S  T  N  Y  V  P  D  Q  S  P  I  M  K  Q  K  S  G  I  E  N   : V  A  G  S  L  T  R  R  L  S  S  A  S  S  L  S  S  M  E  E  S  Y  F  L  Q  A  S  L  D  S  S  D  N  L  S  E  R  R  N  A  L  E  G  N  I  S  P  Y  F  M  K  S  M  T  P  A  F  R  Q  K  D  G  E  L  A  S  Y  M  S  R  L  :  A  S  M  E  A  I  R  D  S  L  A  E  E  L  V  K  M  T  A  E  :  C  E  K  L  R  S  E  A  S  M  L  P  G  I  R  A  E  L  D  A  L  R  R  R  H  S  A  A  L  E  L  M  G  E  R  D  E  E  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  *  A  L  F  P  S  A  I  K  V  T  E  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61985" stop="61817"/>
                    <exon start="59988" stop="58895"/>
                    <exon start="57994" stop="57923"/>
                    <exon start="56757" stop="56683"/>
                    <exon start="55573" stop="55459"/>
                    <exon start="54404" stop="54343"/>
                    <exon start="54257" stop="54210"/>
                    <exon start="52221" stop="51937"/>
                    <exon start="51859" stop="51800"/>
                    <exon start="51717" stop="51634"/>
                    <exon start="51530" stop="51465"/>
                    <exon start="51393" stop="51295"/>
                    <exon start="51218" stop="51000"/>
                    <exon start="50280" stop="50169"/>
                    <exon start="49854" stop="49643"/>
                    <exon start="49405" stop="49346"/>
                    <exon start="49223" stop="49110"/>
                    <exon start="47545" stop="47471"/>
                    <exon start="47386" stop="47351"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>3054</number_coding_nucleotides>
                  <number_encoded_amino_acids>1018</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALDRVKKMAWFGGKLDLTNLDLAGAVNKLSESVKNIEKNFDTALGLEEKSESSNNEASGLWPSTTDRRALFDPVMSFMGQKSEGTAEESVEKAESSKPTLPTGEVVEDSAETTTRRGVVPKEPKEETTDIIEETKSVQEPIEEAKDVDAKPNQMISAEEETEEARAVDVQLNSSTEPSFDQEEQRSVTGPDERKAEINSLAEASKVNELDQETSPGILQKNIPERESSENLELVVSQSSNALSQTEVGIPLLVDSKENTGNDGEQKKEVTEESPPVQLEDASNYPTDREQKKEVTMESPSAESRDASSDRADSGRPSVSDSVTASEGESLEEHSNRSFLGDQHTDEGLKKLSDTVMPENELVSIPVEATQRGNDQETGVKERLSSGSNSSDVTNSVVELEKLKKEMKMMETALQGAARQAQAKADEIAKLMNENEQLKAVTEDLRRKSSDAAIESLREEYHQKVSALERKVYALTKERDTLRREHNKKSDAAALLKEKDEIITQVMAEGEQLSKKQAAQEAQMRKLRAQIRELEEEKKGLHTKLEVEENKVESIKRDKAATEKLLHETVEKHQAELATQKEYYTNALNAAKEAEALSEARANNEARTQLEGRLREAEDREAMLVQALEELRQTLTRTEQQAVFKEDMLRREIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETNSRKAEAWAAVERTLNSRLQEAEAKAATSEEKERSINERLSQTLSRINVLEAQISCLRAEQTQLTRSLDKERQRAAENRQEYLALKEEAETNEGRVNQLEEEIKELRRKHKQEIQEALTHQELLRQELEREKTARLDQERAARSTNYVPDQSPIMKQKSGIENVAGSLTRRLSSASSLSSMEESYFLQASLDSSDNLSERRNALEGNISPYFMKSMTPAFRQKDGELASYMSRLASMEAIRDSLAEELVKMTAECEKLRSEASMLPGIRAELDALRRRHSAALELMGERDEELEELRADIIDMKEMYREQVNLLVNKIQVLSSSLSAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47372" stop="47100"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLALSFVSKCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
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        </AGS_line>
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          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.710" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.683" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
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          <exon-intron don_prob="0.999" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.298" e_score="1.000"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <description PGL_serial="8" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTATCTTGTGGGCAATGCTTCGATTGCATGCCAGCTTCAGGGTTATGGCCTTCAACTACGGATAGGAGGGCCTTATTTGATCCTGTCATGTCTTTTATGGGGCAAAAAAGTGAGGGGACTGCTGAAGAATCTGTAGAGAAAGCTGAGTCGTCAAAGCCCACCTTGCCCACAGGGGAAGTAGTTGAAGATTCAGCTGAGACTACAACTCGACGTGGTGTGGTTCCTAAAGAACCAAAAGAAGAAACAACGGACATTATTGAAGAAACTAAATCGGTTCAAGAACCTATTGAAGAAGCAAAGGATGTTGATGCGAAACCAAATCAAATGATATCTGCTGAAGAAGAAACTGAGGAGGCAAGAGCTGTTGATGTCCAACTGAATTCTTCTACGGAACCAAGTTTTGATCAGGAGGAACAAAGAAGTGTTACTGGGCCAGATGAAAGAAAAGCTGAAATTAATTCACTGGCAGAAGCATCGAAGGTCAATGAGCTTGATCAGGAAACATCTCCAGGAATCCTCCAAAAGAATATTCCAGAGCGAGAATCATCTGAAAACCTCGAGTTGGTTGTTTCCCAATCATCAAATGCTTTATCTCAAACTGAAGTTGGTATCCCGCTGCTTGTTGATTCAAAGGAAAATACTGGTAATGATGGGGAACAGAAGAAAGAAGTCACTGAGGAATCTCCTCCTGTTCAATTAGAGGATGCATCAAATTACCCTACAGACAGGGAACAGAAGAAAGAAGTCACCATGGAATCTCCTTCAGCTGAATCACGGGATGCATCAAGTGACCGAGCAGATAGTGGAAGACCTTCTGTTTCAGATTCTGTAACTGCCAGCGAAGGTGAAAGTCTTGAAGAGCATTCTAACAGGAGCTTTCTTGGTGACCAGCACACTGATGAAGGTCTGAAGAAGCTATCTGATACAGTTATGCCTGAAAATGAGTTGGTTAGTATACCTGTGGAGGCTACCCAGCGAGGAAATGATCAGGAGACTGGTGTGAAAGAACGGTTGAGCTCCGGAAGCAACTCTTCAGATGTTACCAATTCAGTGGTTGAACTGGAGAAGCTGAAAAAGGAAATGAAAATGATGGAAACTGCATTACAAGGAGCTGCTAGACAAGCTCAG : GCTAAAGCTGATGAAATAGCGAAGTTGATGAATGAGAACGAGCAATTGAAGGCTGTTACTGAGGATCTGAGA : AGGAAGTCCAGTGATGCAGCAATTGAATCTCTGCGAGAAGAGTACCATCAAAAAGTTTCTGCTCTTGAGAGGAAG : GTTTATGCTCTCACCAAAGAAAGGGATACACTTCGCAGGGAACATAATAAGAAGAGTGATGCTGCAGCTCTTCTCAAAGAGAAGGATGAGATAATTACTCAAGTAATGGCTGAAG : GTGAGCAGCTTTCTAAAAAGCAAGCTGCCCAAGAAGCTCAGATGAGAAAGTTAAGGGCACAG : ATCAGAGAGCTTGAAGAAGAGAAGAAAGGATTACATACCAAGCTTGAG : GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG : GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA : GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAG : GAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG : GAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG : ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG : GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG : TTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG : GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG : TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGT</gDNA_template>
            <first_frame> L  L  S  C  G  Q  C  F  D  C  M  P  A  S  G  L  W  P  S  T  T  D  R  R  A  L  F  D  P  V  M  S  F  M  G  Q  K  S  E  G  T  A  E  E  S  V  E  K  A  E  S  S  K  P  T  L  P  T  G  E  V  V  E  D  S  A  E  T  T  T  R  R  G  V  V  P  K  E  P  K  E  E  T  T  D  I  I  E  E  T  K  S  V  Q  E  P  I  E  E  A  K  D  V  D  A  K  P  N  Q  M  I  S  A  E  E  E  T  E  E  A  R  A  V  D  V  Q  L  N  S  S  T  E  P  S  F  D  Q  E  E  Q  R  S  V  T  G  P  D  E  R  K  A  E  I  N  S  L  A  E  A  S  K  V  N  E  L  D  Q  E  T  S  P  G  I  L  Q  K  N  I  P  E  R  E  S  S  E  N  L  E  L  V  V  S  Q  S  S  N  A  L  S  Q  T  E  V  G  I  P  L  L  V  D  S  K  E  N  T  G  N  D  G  E  Q  K  K  E  V  T  E  E  S  P  P  V  Q  L  E  D  A  S  N  Y  P  T  D  R  E  Q  K  K  E  V  T  M  E  S  P  S  A  E  S  R  D  A  S  S  D  R  A  D  S  G  R  P  S  V  S  D  S  V  T  A  S  E  G  E  S  L  E  E  H  S  N  R  S  F  L  G  D  Q  H  T  D  E  G  L  K  K  L  S  D  T  V  M  P  E  N  E  L  V  S  I  P  V  E  A  T  Q  R  G  N  D  Q  E  T  G  V  K  E  R  L  S  S  G  S  N  S  S  D  V  T  N  S  V  V  E  L  E  K  L  K  K  E  M  K  M  M  E  T  A  L  Q  G  A  A  R  Q  A  Q  :  A  K  A  D  E  I  A  K  L  M  N  E  N  E  Q  L  K  A  V  T  E  D  L  R  :  R  K  S  S  D  A  A  I  E  S  L  R  E  E  Y  H  Q  K  V  S  A  L  E  R  K  :  V  Y  A  L  T  K  E  R  D  T  L  R  R  E  H  N  K  K  S  D  A  A  A  L  L  K  E  K  D  E  I  I  T  Q  V  M  A  E   : G  E  Q  L  S  K  K  Q  A  A  Q  E  A  Q  M  R  K  L  R  A  Q  :  I  R  E  L  E  E  E  K  K  G  L  H  T  K  L  E  :  V  E  E  N  K  V  E  S  I  K  R  D  K  A  A  T  E  K  L  L  H  E  T  V  E  K  H  Q  A  E  L  A  T  Q  K  E  Y  Y  T  N  A  L  N  A  A  K  E  A  E  A  L  S  E  A  R  A  N  N  E  A  R  T  Q  L  E  G  R  L  R  E  A  E  D  R  E  A  M  L  V  Q  A  L  E  E  L  R  Q  T  L  T  R  T  E  Q  Q  :  A  V  F  K  E  D  M  L  R  R  E  I  E  D  L  Q  K  R  Y  Q  :  A  S  E  R  R  C  E  E  L  I  T  Q  V  P  E  S  T  R  P  L  L  R  Q  I  E  A  M  Q  :  E  T  N  S  R  K  A  E  A  W  A  A  V  E  R  T  L  N  S  R  L  Q  :  E  A  E  A  K  A  A  T  S  E  E  K  E  R  S  I  N  E  R  L  S  Q  T  L  S  R  I  N  V  L  E  A  Q  :  I  S  C  L  R  A  E  Q  T  Q  L  T  R  S  L  D  K  E  R  Q  R  A  A  E  N  R  Q  E  Y  L  A  L  K  E  E  A  E  T  N  E  G  R  V  N  Q  L  E  E  E  I  K  E  L  R  R  K  H  K  Q  E  I  Q  E  A  L  T  H  Q  E  L  L  R  Q  :  E  L  E  R  E  K  T  A  R  L  D  Q  E  R  A  A  R  S  T  N  Y  V  P  D  Q  S  P  I  M  K  Q  K  S  G  I  E  N   : V  A  G  S  L  T  R  R  L  S  S  A  S  S  L  S  S  M  E  E  S  Y  F  L  Q  A  S  L  D  S  S  D  N  L  S  E  R  R  N  A  L  E  G  N  I  S  P  Y  F  M  K  S  M  T  P  A  F  R  Q  K  D  G  E  L  A  S  Y  M  S  R  L  :  A  S  M  E  A  I  R  D  S  L  A  E  E  L  V  K  M  T  A  E  :  C  E  K  L  R  S  E  A  S  M  L  P  G  I  R  A  E  L  D  A  L  R  R  R  H  S  A  A  L  E  L  M  G  E  R  D  E  E  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  *  A  L  F  P  S  A  I  K  V  T  E  M   </first_frame>
            <second_frame>  F  Y  L  V  G  N  A  S  I  A  C  Q  L  Q  G  Y  G  L  Q  L  R  I  G  G  P  Y  L  I  L  S  C  L  L  W  G  K  K  V  R  G  L  L  K  N  L  *  R  K  L  S  R  Q  S  P  P  C  P  Q  G  K  *  L  K  I  Q  L  R  L  Q  L  D  V  V  W  F  L  K  N  Q  K  K  K  Q  R  T  L  L  K  K  L  N  R  F  K  N  L  L  K  K  Q  R  M  L  M  R  N  Q  I  K  *  Y  L  L  K  K  K  L  R  R  Q  E  L  L  M  S  N  *  I  L  L  R  N  Q  V  L  I  R  R  N  K  E  V  L  L  G  Q  M  K  E  K  L  K  L  I  H  W  Q  K  H  R  R  S  M  S  L  I  R  K  H  L  Q  E  S  S  K  R  I  F  Q  S  E  N  H  L  K  T  S  S  W  L  F  P  N  H  Q  M  L  Y  L  K  L  K  L  V  S  R  C  L  L  I  Q  R  K  I  L  V  M  M  G  N  R  R  K  K  S  L  R  N  L  L  L  F  N  *  R  M  H  Q  I  T  L  Q  T  G  N  R  R  K  K  S  P  W  N  L  L  Q  L  N  H  G  M  H  Q  V  T  E  Q  I  V  E  D  L  L  F  Q  I  L  *  L  P  A  K  V  K  V  L  K  S  I  L  T  G  A  F  L  V  T  S  T  L  M  K  V  *  R  S  Y  L  I  Q  L  C  L  K  M  S  W  L  V  Y  L  W  R  L  P  S  E  E  M  I  R  R  L  V  *  K  N  G  *  A  P  E  A  T  L  Q  M  L  P  I  Q  W  L  N  W  R  S  *  K  R  K  *  K  *  W  K  L  H  Y  K  E  L  L  D  K  L  R :   L  K  L  M  K  *  R  S  *  *  M  R  T  S  N  *  R  L  L  L  R  I  *  E :   G  S  P  V  M  Q  Q  L  N  L  C  E  K  S  T  I  K  K  F  L  L  L  R  G  R :   F  M  L  S  P  K  K  G  I  H  F  A  G  N  I  I  R  R  V  M  L  Q  L  F  S  K  R  R  M  R  *  L  L  K  *  W  L  K  :  V  S  S  F  L  K  S  K  L  P  K  K  L  R  *  E  S  *  G  H  R :   S  E  S  L  K  K  R  R  K  D  Y  I  P  S  L  R :   L  K  R  T  K  *  R  V  *  R  G  T  R  Q  Q  Q  K  N  C  F  M  K  Q  S  K  N  I  K  Q  N  L  Q  L  K  K  N  T  I  L  M  L  *  M  L  Q  K  K  Q  K  L  Y  L  R  H  G  L  T  M  K  L  E  L  N  *  R  V  V  S  E  R  L  K  T  V  K  Q  C  L  F  R  H  L  K  N  *  G  K  H  L  P  E  R  S  S  R :   Q  F  L  K  K  I  C  S  A  E  K  L  K  I  S  R  K  D  T  K :   P  V  N  V  D  V  R  S  *  *  H  K  F  P  N  L  P  D  L  F  S  G  R  *  K  P  C  R :   K  Q  T  P  E  R  L  K  L  G  L  L  L  R  E  P  *  I  H  V  F  R :   K  P  R  Q  K  L  Q  L  Q  K  K  R  S  D  L  L  M  N  A  F  L  K  P  Y  P  E  S  M  F  L  R  L  R :   Y  L  V  L  E  L  S  R  H  S  *  Q  G  P  L  T  K  R  D  S  G  P  Q  R  I  G  K  N  I  L  L  *  R  R  K  L  R  L  T  K  V  V  *  I  S  L  K  R  K  L  K  N  S  E  G  N  T  S  R  K  Y  K  K  H  *  L  I  R  N  S  C  G  R :   S  W  K  G  R  K  L  L  V  W  I  K  K  G  P  L  V  L  L  I  M  C  L  I  R  A  Q  *  *  S  R  N  L  G  *  K  M  :  L  Q  E  V  *  H  A  D  F  R  V  L  A  A  *  V  V  W  R  K  A  I  F  C  K  H  L  W  T  R  L  T  I  Y  L  S  V  E  M  H  *  R  V  I  *  V  H  T  L  *  R  V  *  R  L  H  F  A  R  K  M  G  N  L  R  L  I  C  L  D  W :   H  L  W  K  P  S  V  T  P  L  L  R  S  W  L  K  *  L  Q  S :   V  K  S  Y  V  Q  K  L  P  C  C  L  A  S  E  Q  S  *  M  H  L  G  G  D  T  R  Q  L  L  N  *  W  V  N  V  M  R  S :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F  K  L  C  F  Q  V  Q  L  K  L  L  K  W  </second_frame>
            <third_frame>   F  I  L  W  A  M  L  R  L  H  A  S  F  R  V  M  A  F  N  Y  G  *  E  G  L  I  *  S  C  H  V  F  Y  G  A  K  K  *  G  D  C  *  R  I  C  R  E  S  *  V  V  K  A  H  L  A  H  R  G  S  S  *  R  F  S  *  D  Y  N  S  T  W  C  G  S  *  R  T  K  R  R  N  N  G  H  Y  *  R  N  *  I  G  S  R  T  Y  *  R  S  K  G  C  *  C  E  T  K  S  N  D  I  C  *  R  R  N  *  G  G  K  S  C  *  C  P  T  E  F  F  Y  G  T  K  F  *  S  G  G  T  K  K  C  Y  W  A  R  *  K  K  S  *  N  *  F  T  G  R  S  I  E  G  Q  *  A  *  S  G  N  I  S  R  N  P  P  K  E  Y  S  R  A  R  I  I  *  K  P  R  V  G  C  F  P  I  I  K  C  F  I  S  N  *  S  W  Y  P  A  A  C  *  F  K  G  K  Y  W  *  *  W  G  T  E  E  R  S  H  *  G  I  S  S  C  S  I  R  G  C  I  K  L  P  Y  R  Q  G  T  E  E  R  S  H  H  G  I  S  F  S  *  I  T  G  C  I  K  *  P  S  R  *  W  K  T  F  C  F  R  F  C  N  C  Q  R  R  *  K  S  *  R  A  F  *  Q  E  L  S  W  *  P  A  H  *  *  R  S  E  E  A  I  *  Y  S  Y  A  *  K  *  V  G  *  Y  T  C  G  G  Y  P  A  R  K  *  S  G  D  W  C  E  R  T  V  E  L  R  K  Q  L  F  R  C  Y  Q  F  S  G  *  T  G  E  A  E  K  G  N  E  N  D  G  N  C  I  T  R  S  C  *  T  S  S   : G  *  S  *  *  N  S  E  V  D  E  *  E  R  A  I  E  G  C  Y  *  G  S  E   : K  E  V  Q  *  C  S  N  *  I  S  A  R  R  V  P  S  K  S  F  C  S  *  E  E   : G  L  C  S  H  Q  R  K  G  Y  T  S  Q  G  T  *  *  E  E  *  C  C  S  S  S  Q  R  E  G  *  D  N  Y  S  S  N  G  *  R :   *  A  A  F  *  K  A  S  C  P  R  S  S  D  E  K  V  K  G  T   : D  Q  R  A  *  R  R  E  E  R  I  T  Y  Q  A  *   : G  *  R  E  Q  S  R  E  Y  K  E  G  Q  G  S  N  R  K  I  A  S  *  N  S  R  K  T  S  S  R  T  C  N  S  K  R  I  L  Y  *  C  F  K  C  C  K  R  S  R  S  F  I  *  G  T  G  *  Q  *  S  *  N  S  T  R  G  S  S  Q  R  G  *  R  P  *  S  N  A  C  S  G  T  *  R  I  K  A  N  T  Y  Q  N  G  A  A   : G  S  F  *  R  R  Y  A  P  Q  R  N  *  R  S  P  E  K  I  P   : S  Q  *  T  S  M  *  G  V  D  N  T  S  S  R  I  Y  Q  T  S  S  Q  A  D  R  S  H  A   : G  N  K  L  Q  K  G  *  S  L  G  C  C  *  E  N  L  E  F  T  S  S   : G  S  R  G  K  S  C  N  F  R  R  K  G  A  I  Y  *  *  T  P  F  S  N  P  I  P  N  Q  C  S  *  G  S   : D  I  L  S  *  S  *  A  D  T  A  N  K  V  P  *  Q  R  E  T  A  G  R  R  E  *  A  R  I  S  C  S  K  G  G  S  *  D  *  R  R  S  C  E  S  A  *  R  G  N  *  R  T  Q  K  E  T  Q  A  G  N  T  R  S  I  N  S  S  G  T  P  A  A   : G  V  G  K  G  E  N  C  S  F  G  S  R  K  G  R  S  F  Y  *  L  C  A  *  S  E  P  N  N  E  A  E  I  W  D  R  K  C :   C  R  K  F  D  T  Q  T  F  E  C  *  Q  L  E  *  Y  G  G  K  L  F  S  A  S  I  F  G  L  V  *  Q  F  I  *  A  *  K  C  I  R  G  *  Y  K  S  I  L  Y  E  E  Y  D  A  C  I  S  P  E  R  W  G  T  C  V  L  Y  V  S  T   : G  I  Y  G  S  H  P  *  L  P  C  *  G  V  G  *  N  D  C  R   : V  *  K  A  T  F  R  S  F  H  A  A  W  H  P  S  R  A  R  C  T  *  E  E  T  L  G  S  S  *  I  D  G  *  T  *  *  G   : V  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L  S  F  V  S  K  C  N  *  S  Y  *  N  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60025" stop="58895"/>
                    <exon start="57994" stop="57923"/>
                    <exon start="56757" stop="56683"/>
                    <exon start="55573" stop="55459"/>
                    <exon start="54404" stop="54343"/>
                    <exon start="54257" stop="54210"/>
                    <exon start="52221" stop="51937"/>
                    <exon start="51859" stop="51800"/>
                    <exon start="51717" stop="51634"/>
                    <exon start="51530" stop="51465"/>
                    <exon start="51393" stop="51295"/>
                    <exon start="51218" stop="51000"/>
                    <exon start="50280" stop="50169"/>
                    <exon start="49854" stop="49643"/>
                    <exon start="49405" stop="49346"/>
                    <exon start="49223" stop="49110"/>
                    <exon start="47545" stop="47471"/>
                    <exon start="47386" stop="47351"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2922</number_coding_nucleotides>
                  <number_encoded_amino_acids>974</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSCGQCFDCMPASGLWPSTTDRRALFDPVMSFMGQKSEGTAEESVEKAESSKPTLPTGEVVEDSAETTTRRGVVPKEPKEETTDIIEETKSVQEPIEEAKDVDAKPNQMISAEEETEEARAVDVQLNSSTEPSFDQEEQRSVTGPDERKAEINSLAEASKVNELDQETSPGILQKNIPERESSENLELVVSQSSNALSQTEVGIPLLVDSKENTGNDGEQKKEVTEESPPVQLEDASNYPTDREQKKEVTMESPSAESRDASSDRADSGRPSVSDSVTASEGESLEEHSNRSFLGDQHTDEGLKKLSDTVMPENELVSIPVEATQRGNDQETGVKERLSSGSNSSDVTNSVVELEKLKKEMKMMETALQGAARQAQAKADEIAKLMNENEQLKAVTEDLRRKSSDAAIESLREEYHQKVSALERKVYALTKERDTLRREHNKKSDAAALLKEKDEIITQVMAEGEQLSKKQAAQEAQMRKLRAQIRELEEEKKGLHTKLEVEENKVESIKRDKAATEKLLHETVEKHQAELATQKEYYTNALNAAKEAEALSEARANNEARTQLEGRLREAEDREAMLVQALEELRQTLTRTEQQAVFKEDMLRREIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETNSRKAEAWAAVERTLNSRLQEAEAKAATSEEKERSINERLSQTLSRINVLEAQISCLRAEQTQLTRSLDKERQRAAENRQEYLALKEEAETNEGRVNQLEEEIKELRRKHKQEIQEALTHQELLRQELEREKTARLDQERAARSTNYVPDQSPIMKQKSGIENVAGSLTRRLSSASSLSSMEESYFLQASLDSSDNLSERRNALEGNISPYFMKSMTPAFRQKDGELASYMSRLASMEAIRDSLAEELVKMTAECEKLRSEASMLPGIRAELDALRRRHSAALELMGERDEELEELRADIIDMKEMYREQVNLLVNKIQVLSSSLSAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47372" stop="47100"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLALSFVSKCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="52637" e_stop="52454"/>
            <exon e_start="52221" e_stop="51937"/>
            <exon e_start="51859" e_stop="51800"/>
            <exon e_start="51717" e_stop="51634"/>
            <exon e_start="51530" e_stop="51465"/>
            <exon e_start="51393" e_stop="51295"/>
            <exon e_start="51218" e_stop="51000"/>
            <exon e_start="50280" e_stop="50169"/>
            <exon e_start="49854" e_stop="49643"/>
            <exon e_start="49405" e_stop="49346"/>
            <exon e_start="49223" e_stop="49110"/>
            <exon e_start="47545" e_stop="47471"/>
            <exon e_start="47386" e_stop="47085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.683" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.378" acc_prob="0.254" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.298" e_score="1.000"/>
          <exon-intron don_prob="0.871" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.654" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52637" e_stop="52454" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52453" i_stop="52222" i_length="232"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52221" e_stop="51937" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.683" acc_prob="0.862">
            <gDNA_intron_boundary i_start="51936" i_stop="51860" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51859" e_stop="51800" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51799" i_stop="51718" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51717" e_stop="51634" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51633" i_stop="51531" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51530" e_stop="51465" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.933" acc_prob="0.947">
            <gDNA_intron_boundary i_start="51464" i_stop="51394" i_length="71"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="51393" e_stop="51295" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.378" acc_prob="0.254">
            <gDNA_intron_boundary i_start="51294" i_stop="51219" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51218" e_stop="51000" e_length="219"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.820">
            <gDNA_intron_boundary i_start="50999" i_stop="50281" i_length="719"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="50280" e_stop="50169" e_length="112"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.298">
            <gDNA_intron_boundary i_start="50168" i_stop="49855" i_length="314"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="49854" e_stop="49643" e_length="212"/>
          </exon>
          <intron i_serial="9" don_prob="0.871" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49642" i_stop="49406" i_length="237"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="49405" e_stop="49346" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="49345" i_stop="49224" i_length="122"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="49223" e_stop="49110" e_length="114"/>
          </exon>
          <intron i_serial="11" don_prob="0.990" acc_prob="0.921">
            <gDNA_intron_boundary i_start="49109" i_stop="47546" i_length="1564"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="47545" e_stop="47471" e_length="75"/>
          </exon>
          <intron i_serial="12" don_prob="0.654" acc_prob="0.906">
            <gDNA_intron_boundary i_start="47470" i_stop="47387" i_length="84"/>
          </intron>
          <exon e_serial="13" e_score="0.987">
            <gDNA_exon_boundary e_start="47386" e_stop="47085" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52637" stop="52454"/>
              <exon start="52221" stop="51937"/>
              <exon start="51859" stop="51800"/>
              <exon start="51717" stop="51667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52016" stop="51937"/>
              <exon start="51859" stop="51800"/>
              <exon start="51717" stop="51634"/>
              <exon start="51530" stop="51465"/>
              <exon start="51393" stop="51295"/>
              <exon start="51218" stop="51110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51991" stop="51937"/>
              <exon start="51859" stop="51800"/>
              <exon start="51717" stop="51634"/>
              <exon start="51530" stop="51465"/>
              <exon start="51393" stop="51295"/>
              <exon start="51218" stop="51000"/>
              <exon start="50280" stop="50204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51852" stop="51800"/>
              <exon start="51717" stop="51634"/>
              <exon start="51530" stop="51465"/>
              <exon start="51393" stop="51295"/>
              <exon start="51218" stop="51000"/>
              <exon start="50280" stop="50209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51520" stop="51465"/>
              <exon start="51393" stop="51295"/>
              <exon start="51218" stop="51000"/>
              <exon start="50280" stop="50169"/>
              <exon start="49854" stop="49778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51500" stop="51465"/>
              <exon start="51393" stop="51295"/>
              <exon start="51218" stop="51000"/>
              <exon start="50280" stop="50169"/>
              <exon start="49854" stop="49645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49750" stop="49643"/>
              <exon start="49405" stop="49346"/>
              <exon start="49223" stop="49110"/>
              <exon start="47545" stop="47471"/>
              <exon start="47386" stop="47085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236394" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49739" stop="49643"/>
              <exon start="49405" stop="49346"/>
              <exon start="49223" stop="49110"/>
              <exon start="47545" stop="47471"/>
              <exon start="47386" stop="47202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49703" stop="49643"/>
              <exon start="49405" stop="49346"/>
              <exon start="49223" stop="49110"/>
              <exon start="47545" stop="47471"/>
              <exon start="47386" stop="47123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265183" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47528" stop="47471"/>
              <exon start="47386" stop="47123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47521" stop="47471"/>
              <exon start="47386" stop="47196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47471"/>
              <exon start="47386" stop="47123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230213" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAACCCCAACCTCACGCCCAGGACTGGAAATCTGGATACTGGACAATTTAATAAGGGGTCGAATATCAGGAAACAAGAATTGGGATGGTCTGATACCATGTAAGAAACTCAACCCCAAAAAGGCTAGCTCAAGTGGGGAGGGTTGCACAAGACCAGATAAGGAGAGATTCTTCAAGAGAGAT : GTTGAAGAGAACAAAGTAGAGAGTATAAAGAGGGACAAGGCAGCAACAGAAAAATTGCTTCATGAAACAGTCGAAAAACATCAAGCAGAACTTGCAACTCAAAAAGAATACTATACTAATGCTTTAAATGCTGCAAAAGAAGCAGAAGCTTTATCTGAGGCACGGGCTAACAATGAAGCTAGAACTCAACTAGAGGGTCGTCTCAGAGAGGCTGAAGACCGTGAAGCAATGCTTGTTCAGGCACTTGAAGAATTAAGGCAAACACTTACCAGAACGGAGCAGCAG : GCAGTTTTTAAAGAAGATATGCTCCGCAGAGAAATTGAAGATCTCCAGAAAAGATACCAA : GCCAGTGAACGTCGATGTGAGGAGTTGATAACACAAGTTCCCGAATCTACCAGACCTCTTCTCAGGCAGATAGAAGCCATGCAG : GAAACAAACTCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAGAGAACCTTGAATTCACGTCTTCAG : GAAGCCGAGGCAAAAGCTGCAACTTCAGAAGAAAAGGAGCGATCTATTAATGAACGCCTTTCTCAAACCCTATCCCGAATCAATGTTCTTGAGGCTCAG : ATATCTTGTCTTAGAGCTGAGCAGACACAGCTAACAAGGTCCCTTGACAAAGAGAGACAGCGGGCCGCAGAGAATAGGCAAGAATATCTTGCTCTAAAGGAGGAAGCTGAGACTAACGAAGGTCGTGTGAATCAGCTTGAAGAGGAAATTAAAGAACTCAGAAGGAAACACAAGCAGGAAATACAAGAAGCATTAACTCATCAGGAACTCCTGCGGCAG : GAGTTGGAAAGGGAGAAAACTGCTCGTTTGGATCAAGAAAGGGCCGCTCGTTCTACTAATTATGTGCCTGATCAGAGCCCAATAATGAAGCAGAAATCTGGGATAGAAAATG : TTGCAGGAAGTTTGACACGCAGACTTTCGAGTGCTAGCAGCTTGAGTAGTATGGAGGAAAGCTATTTTCTGCAAGCATCTTTGGACTCGTCTGACAATTTATCTGAGCGTAGAAATGCATTAGAGGGTAATATAAGTCCATACTTTATGAAGAGTATGACGCCTGCATTTCGCCAGAAAGATGGGGAACTTGCGTCTTATATGTCTCGACTG : GCATCTATGGAAGCCATCCGTGACTCCCTTGCTGAGGAGTTGGTTAAAATGACTGCAGAG : TGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGT</gDNA_template>
            <first_frame> V  N  P  N  L  T  P  R  T  G  N  L  D  T  G  Q  F  N  K  G  S  N  I  R  K  Q  E  L  G  W  S  D  T  M  *  E  T  Q  P  Q  K  G  *  L  K  W  G  G  L  H  K  T  R  *  G  E  I  L  Q  E  R   : C  *  R  E  Q  S  R  E  Y  K  E  G  Q  G  S  N  R  K  I  A  S  *  N  S  R  K  T  S  S  R  T  C  N  S  K  R  I  L  Y  *  C  F  K  C  C  K  R  S  R  S  F  I  *  G  T  G  *  Q  *  S  *  N  S  T  R  G  S  S  Q  R  G  *  R  P  *  S  N  A  C  S  G  T  *  R  I  K  A  N  T  Y  Q  N  G  A  A   : G  S  F  *  R  R  Y  A  P  Q  R  N  *  R  S  P  E  K  I  P   : S  Q  *  T  S  M  *  G  V  D  N  T  S  S  R  I  Y  Q  T  S  S  Q  A  D  R  S  H  A   : G  N  K  L  Q  K  G  *  S  L  G  C  C  *  E  N  L  E  F  T  S  S   : G  S  R  G  K  S  C  N  F  R  R  K  G  A  I  Y  *  *  T  P  F  S  N  P  I  P  N  Q  C  S  *  G  S   : D  I  L  S  *  S  *  A  D  T  A  N  K  V  P  *  Q  R  E  T  A  G  R  R  E  *  A  R  I  S  C  S  K  G  G  S  *  D  *  R  R  S  C  E  S  A  *  R  G  N  *  R  T  Q  K  E  T  Q  A  G  N  T  R  S  I  N  S  S  G  T  P  A  A   : G  V  G  K  G  E  N  C  S  F  G  S  R  K  G  R  S  F  Y  *  L  C  A  *  S  E  P  N  N  E  A  E  I  W  D  R  K  C :   C  R  K  F  D  T  Q  T  F  E  C  *  Q  L  E  *  Y  G  G  K  L  F  S  A  S  I  F  G  L  V  *  Q  F  I  *  A  *  K  C  I  R  G  *  Y  K  S  I  L  Y  E  E  Y  D  A  C  I  S  P  E  R  W  G  T  C  V  L  Y  V  S  T   : G  I  Y  G  S  H  P  *  L  P  C  *  G  V  G  *  N  D  C  R   : V  *  K  A  T  F  R  S  F  H  A  A  W  H  P  S  R  A  R  C  T  *  E  E  T  L  G  S  S  *  I  D  G  *  T  *  *  G   : V  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L  S  F  V  S  K  C  N  *  S  Y  *  N  G </first_frame>
            <second_frame>  S  T  P  T  S  R  P  G  L  E  I  W  I  L  D  N  L  I  R  G  R  I  S  G  N  K  N  W  D  G  L  I  P  C  K  K  L  N  P  K  K  A  S  S  S  G  E  G  C  T  R  P  D  K  E  R  F  F  K  R  D  :  V  E  E  N  K  V  E  S  I  K  R  D  K  A  A  T  E  K  L  L  H  E  T  V  E  K  H  Q  A  E  L  A  T  Q  K  E  Y  Y  T  N  A  L  N  A  A  K  E  A  E  A  L  S  E  A  R  A  N  N  E  A  R  T  Q  L  E  G  R  L  R  E  A  E  D  R  E  A  M  L  V  Q  A  L  E  E  L  R  Q  T  L  T  R  T  E  Q  Q  :  A  V  F  K  E  D  M  L  R  R  E  I  E  D  L  Q  K  R  Y  Q  :  A  S  E  R  R  C  E  E  L  I  T  Q  V  P  E  S  T  R  P  L  L  R  Q  I  E  A  M  Q  :  E  T  N  S  R  K  A  E  A  W  A  A  V  E  R  T  L  N  S  R  L  Q  :  E  A  E  A  K  A  A  T  S  E  E  K  E  R  S  I  N  E  R  L  S  Q  T  L  S  R  I  N  V  L  E  A  Q  :  I  S  C  L  R  A  E  Q  T  Q  L  T  R  S  L  D  K  E  R  Q  R  A  A  E  N  R  Q  E  Y  L  A  L  K  E  E  A  E  T  N  E  G  R  V  N  Q  L  E  E  E  I  K  E  L  R  R  K  H  K  Q  E  I  Q  E  A  L  T  H  Q  E  L  L  R  Q  :  E  L  E  R  E  K  T  A  R  L  D  Q  E  R  A  A  R  S  T  N  Y  V  P  D  Q  S  P  I  M  K  Q  K  S  G  I  E  N   : V  A  G  S  L  T  R  R  L  S  S  A  S  S  L  S  S  M  E  E  S  Y  F  L  Q  A  S  L  D  S  S  D  N  L  S  E  R  R  N  A  L  E  G  N  I  S  P  Y  F  M  K  S  M  T  P  A  F  R  Q  K  D  G  E  L  A  S  Y  M  S  R  L  :  A  S  M  E  A  I  R  D  S  L  A  E  E  L  V  K  M  T  A  E  :  C  E  K  L  R  S  E  A  S  M  L  P  G  I  R  A  E  L  D  A  L  R  R  R  H  S  A  A  L  E  L  M  G  E  R  D  E  E  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  *  A  L  F  P  S  A  I  K  V  T  E  M   </second_frame>
            <third_frame>   Q  P  Q  P  H  A  Q  D  W  K  S  G  Y  W  T  I  *  *  G  V  E  Y  Q  E  T  R  I  G  M  V  *  Y  H  V  R  N  S  T  P  K  R  L  A  Q  V  G  R  V  A  Q  D  Q  I  R  R  D  S  S  R  E  M :   L  K  R  T  K  *  R  V  *  R  G  T  R  Q  Q  Q  K  N  C  F  M  K  Q  S  K  N  I  K  Q  N  L  Q  L  K  K  N  T  I  L  M  L  *  M  L  Q  K  K  Q  K  L  Y  L  R  H  G  L  T  M  K  L  E  L  N  *  R  V  V  S  E  R  L  K  T  V  K  Q  C  L  F  R  H  L  K  N  *  G  K  H  L  P  E  R  S  S  R :   Q  F  L  K  K  I  C  S  A  E  K  L  K  I  S  R  K  D  T  K :   P  V  N  V  D  V  R  S  *  *  H  K  F  P  N  L  P  D  L  F  S  G  R  *  K  P  C  R :   K  Q  T  P  E  R  L  K  L  G  L  L  L  R  E  P  *  I  H  V  F  R :   K  P  R  Q  K  L  Q  L  Q  K  K  R  S  D  L  L  M  N  A  F  L  K  P  Y  P  E  S  M  F  L  R  L  R :   Y  L  V  L  E  L  S  R  H  S  *  Q  G  P  L  T  K  R  D  S  G  P  Q  R  I  G  K  N  I  L  L  *  R  R  K  L  R  L  T  K  V  V  *  I  S  L  K  R  K  L  K  N  S  E  G  N  T  S  R  K  Y  K  K  H  *  L  I  R  N  S  C  G  R :   S  W  K  G  R  K  L  L  V  W  I  K  K  G  P  L  V  L  L  I  M  C  L  I  R  A  Q  *  *  S  R  N  L  G  *  K  M  :  L  Q  E  V  *  H  A  D  F  R  V  L  A  A  *  V  V  W  R  K  A  I  F  C  K  H  L  W  T  R  L  T  I  Y  L  S  V  E  M  H  *  R  V  I  *  V  H  T  L  *  R  V  *  R  L  H  F  A  R  K  M  G  N  L  R  L  I  C  L  D  W :   H  L  W  K  P  S  V  T  P  L  L  R  S  W  L  K  *  L  Q  S :   V  K  S  Y  V  Q  K  L  P  C  C  L  A  S  E  Q  S  *  M  H  L  G  G  D  T  R  Q  L  L  N  *  W  V  N  V  M  R  S :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F  K  L  C  F  Q  V  Q  L  K  L  L  K  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52636" stop="52454"/>
                    <exon start="52221" stop="51937"/>
                    <exon start="51859" stop="51800"/>
                    <exon start="51717" stop="51634"/>
                    <exon start="51530" stop="51465"/>
                    <exon start="51393" stop="51295"/>
                    <exon start="51218" stop="51000"/>
                    <exon start="50280" stop="50169"/>
                    <exon start="49854" stop="49643"/>
                    <exon start="49405" stop="49346"/>
                    <exon start="49223" stop="49110"/>
                    <exon start="47545" stop="47471"/>
                    <exon start="47386" stop="47351"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1602</number_coding_nucleotides>
                  <number_encoded_amino_acids>534</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STPTSRPGLEIWILDNLIRGRISGNKNWDGLIPCKKLNPKKASSSGEGCTRPDKERFFKRDVEENKVESIKRDKAATEKLLHETVEKHQAELATQKEYYTNALNAAKEAEALSEARANNEARTQLEGRLREAEDREAMLVQALEELRQTLTRTEQQAVFKEDMLRREIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETNSRKAEAWAAVERTLNSRLQEAEAKAATSEEKERSINERLSQTLSRINVLEAQISCLRAEQTQLTRSLDKERQRAAENRQEYLALKEEAETNEGRVNQLEEEIKELRRKHKQEIQEALTHQELLRQELEREKTARLDQERAARSTNYVPDQSPIMKQKSGIENVAGSLTRRLSSASSLSSMEESYFLQASLDSSDNLSERRNALEGNISPYFMKSMTPAFRQKDGELASYMSRLASMEAIRDSLAEELVKMTAECEKLRSEASMLPGIRAELDALRRRHSAALELMGERDEELEELRADIIDMKEMYREQVNLLVNKIQVLSSSLSAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47372" stop="47100"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLALSFVSKCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="47692" e_stop="47689"/>
            <exon e_start="47545" e_stop="47471"/>
            <exon e_start="47386" e_stop="47123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.722" acc_prob="0.921" e_score="0.750"/>
          <exon-intron don_prob="0.654" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="47692" e_stop="47689" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.722" acc_prob="0.921">
            <gDNA_intron_boundary i_start="47688" i_stop="47546" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47545" e_stop="47471" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.654" acc_prob="0.906">
            <gDNA_intron_boundary i_start="47470" i_stop="47387" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47386" e_stop="47123" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47692" stop="47689"/>
              <exon start="47545" stop="47471"/>
              <exon start="47386" stop="47123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47528" stop="47471"/>
              <exon start="47386" stop="47123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47521" stop="47471"/>
              <exon start="47386" stop="47196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47471"/>
              <exon start="47386" stop="47123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230213" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAT : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAA</gDNA_template>
            <first_frame> G   : F  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L  </first_frame>
            <second_frame>  D  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  * </second_frame>
            <third_frame>   I :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47372" stop="47124"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="49225" e_stop="49110"/>
            <exon e_start="47545" e_stop="47471"/>
            <exon e_start="47386" e_stop="47085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.654" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49225" e_stop="49110" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.921">
            <gDNA_intron_boundary i_start="49109" i_stop="47546" i_length="1564"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47545" e_stop="47471" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.654" acc_prob="0.906">
            <gDNA_intron_boundary i_start="47470" i_stop="47387" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="47386" e_stop="47085" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49225" stop="49110"/>
              <exon start="47545" stop="47471"/>
              <exon start="47386" stop="47085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241301" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47528" stop="47471"/>
              <exon start="47386" stop="47123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47521" stop="47471"/>
              <exon start="47386" stop="47196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47471"/>
              <exon start="47386" stop="47123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230213" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGTGAAAAGCTACGTTCAGAAGCTTCCATGCTGCCTGGCATCCGAGCAGAGCTAGATGCACTTAGGAGGAGACACTCGGCAGCTCTTGAATTGATGGGTGAACGTGATGAGGAG : TTGGAAGAACTTCGTGCTGATATTATTGATATGAAGGAAATGTACAGAGAACAAGTAAATTTACTCGTGAATAAG : ATCCAGGTGCTTAGTTCATCACTGAGTGCCACCTGACAGCTGATATGTTGATGAATTTTTTTTTCTGGTCTGTTTCATCATGGAGGGAGGGTGCTGCAGTGTATTTGGTGTATCACATTGATTTTGGACACGACAATTCTTATGTCACCAGTTTTTATTATAAATCTATAGAGAAACTACCTTTTACAGAGGTTTGTTATTGTAATTTTAAAGTGAATCGTTGTATAGCATATTCTTTTAACAGTGACGTATTATTGGCTTTAAGCTTTGTTTCCAAGTGCAATTAAAGTTACTGAAATGGT</gDNA_template>
            <first_frame> S  V  K  S  Y  V  Q  K  L  P  C  C  L  A  S  E  Q  S  *  M  H  L  G  G  D  T  R  Q  L  L  N  *  W  V  N  V  M  R  S :   W  K  N  F  V  L  I  L  L  I  *  R  K  C  T  E  N  K  *  I  Y  S  *  I  R :   S  R  C  L  V  H  H  *  V  P  P  D  S  *  Y  V  D  E  F  F  F  L  V  C  F  I  M  E  G  G  C  C  S  V  F  G  V  S  H  *  F  W  T  R  Q  F  L  C  H  Q  F  L  L  *  I  Y  R  E  T  T  F  Y  R  G  L  L  L  *  F  *  S  E  S  L  Y  S  I  F  F  *  Q  *  R  I  I  G  F  K  L  C  F  Q  V  Q  L  K  L  L  K  W  </first_frame>
            <second_frame>  V  *  K  A  T  F  R  S  F  H  A  A  W  H  P  S  R  A  R  C  T  *  E  E  T  L  G  S  S  *  I  D  G  *  T  *  *  G   : V  G  R  T  S  C  *  Y  Y  *  Y  E  G  N  V  Q  R  T  S  K  F  T  R  E  *   : D  P  G  A  *  F  I  T  E  C  H  L  T  A  D  M  L  M  N  F  F  F  W  S  V  S  S  W  R  E  G  A  A  V  Y  L  V  Y  H  I  D  F  G  H  D  N  S  Y  V  T  S  F  Y  Y  K  S  I  E  K  L  P  F  T  E  V  C  Y  C  N  F  K  V  N  R  C  I  A  Y  S  F  N  S  D  V  L  L  A  L  S  F  V  S  K  C  N  *  S  Y  *  N  G </second_frame>
            <third_frame>   C  E  K  L  R  S  E  A  S  M  L  P  G  I  R  A  E  L  D  A  L  R  R  R  H  S  A  A  L  E  L  M  G  E  R  D  E  E  :  L  E  E  L  R  A  D  I  I  D  M  K  E  M  Y  R  E  Q  V  N  L  L  V  N  K  :  I  Q  V  L  S  S  S  L  S  A  T  *  Q  L  I  C  *  *  I  F  F  S  G  L  F  H  H  G  G  R  V  L  Q  C  I  W  C  I  T  L  I  L  D  T  T  I  L  M  S  P  V  F  I  I  N  L  *  R  N  Y  L  L  Q  R  F  V  I  V  I  L  K  *  I  V  V  *  H  I  L  L  T  V  T  Y  Y  W  L  *  A  L  F  P  S  A  I  K  V  T  E  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47372" stop="47100"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FITECHLTADMLMNFFFWSVSSWREGAAVYLVYHIDFGHDNSYVTSFYYKSIEKLPFTEVCYCNFKVNRCIAYSFNSDVLLALSFVSKCN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="9" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49223" stop="49110"/>
                    <exon start="47545" stop="47471"/>
                    <exon start="47386" stop="47351"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CEKLRSEASMLPGIRAELDALRRRHSAALELMGERDEELEELRADIIDMKEMYREQVNLLVNKIQVLSSSLSAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="58935" PGL_stop="59373"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58935" e_stop="59373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="58935" e_stop="59373" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58935" stop="59373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58935" stop="59348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTCATTTCCTTTTTCAGCTTCTCCAGTTCAACCACTGAATTGGTAACATCTGAAGAGTTGCTTCCGGAGCTCAACCGTTCTTTCACACCAGTCTCCTGATCATTTCCTCGCTGGGTAGCCTCCACAGGTATACTAACCAACTCATTTTCAGGCATAACTGTATCAGATAGCTTCTTCAGACCTTCATCAGTGTGCTGGTCACCAAGAAAGCTCCTGTTAGAATGCTCTTCAAGACTTTCACCTTCGCTGGCAGTTACAGAATCTGAAACAGAAGGTCTTCCACTATCTGCTCGGTCACTTGATGCATCCCGTGATTCAGCTGAAGGAGATTCCATGGTGACTTCTTTCTTCTGTTCCCTGTCTGTAGGGTAATTTGATGCATCCTCTAATTGAACAGGAGGAGATTCCTCAGTGACTTCTTTCTTCTGTTCCCCAT</gDNA_template>
            <first_frame> I  F  I  S  F  F  S  F  S  S  S  T  T  E  L  V  T  S  E  E  L  L  P  E  L  N  R  S  F  T  P  V  S  *  S  F  P  R  W  V  A  S  T  G  I  L  T  N  S  F  S  G  I  T  V  S  D  S  F  F  R  P  S  S  V  C  W  S  P  R  K  L  L  L  E  C  S  S  R  L  S  P  S  L  A  V  T  E  S  E  T  E  G  L  P  L  S  A  R  S  L  D  A  S  R  D  S  A  E  G  D  S  M  V  T  S  F  F  C  S  L  S  V  G  *  F  D  A  S  S  N  *  T  G  G  D  S  S  V  T  S  F  F  C  S  P  </first_frame>
            <second_frame>  F  S  F  P  F  S  A  S  P  V  Q  P  L  N  W  *  H  L  K  S  C  F  R  S  S  T  V  L  S  H  Q  S  P  D  H  F  L  A  G  *  P  P  Q  V  Y  *  P  T  H  F  Q  A  *  L  Y  Q  I  A  S  S  D  L  H  Q  C  A  G  H  Q  E  S  S  C  *  N  A  L  Q  D  F  H  L  R  W  Q  L  Q  N  L  K  Q  K  V  F  H  Y  L  L  G  H  L  M  H  P  V  I  Q  L  K  E  I  P  W  *  L  L  S  S  V  P  C  L  *  G  N  L  M  H  P  L  I  E  Q  E  E  I  P  Q  *  L  L  S  S  V  P  H </second_frame>
            <third_frame>   F  H  F  L  F  Q  L  L  Q  F  N  H  *  I  G  N  I  *  R  V  A  S  G  A  Q  P  F  F  H  T  S  L  L  I  I  S  S  L  G  S  L  H  R  Y  T  N  Q  L  I  F  R  H  N  C  I  R  *  L  L  Q  T  F  I  S  V  L  V  T  K  K  A  P  V  R  M  L  F  K  T  F  T  F  A  G  S  Y  R  I  *  N  R  R  S  S  T  I  C  S  V  T  *  C  I  P  *  F  S  *  R  R  F  H  G  D  F  F  L  L  F  P  V  C  R  V  I  *  C  I  L  *  L  N  R  R  R  F  L  S  D  F  F  L  L  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59037" stop="59309"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFPRWVASTGILTNSFSGITVSDSFFRPSSVCWSPRKLLLECSSRLSPSLAVTESETEGLPLSARSLDASRDSAEGDSMVTSFFCSLSVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="66671" PGL_stop="62401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66615" e_stop="66396"/>
            <exon e_start="65674" e_stop="65580"/>
            <exon e_start="65216" e_stop="65130"/>
            <exon e_start="64769" e_stop="64707"/>
            <exon e_start="64539" e_stop="64502"/>
            <exon e_start="64195" e_stop="63932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66615" e_stop="66396" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65674" e_stop="65580" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65216" e_stop="65130" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64769" e_stop="64707" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64539" e_stop="64502" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64195" e_stop="63932" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66615" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66595" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="63932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66583" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66515" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434923" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65673" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA : CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT : TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG : GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCT</gDNA_template>
            <first_frame> W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T   : T  R  Q  G  H  L  A  I  T  A  K  A  T  S  E  S  S  E  S  L  S  S  P  S  V  V  K  S  V  K  N  I  :  W  D  N  P  E  D  R  I  A  V  I  G  L  G  I  A  A  I  V  G  F  W  A  A  S  N  F  V  A  :  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  I  F  F  P  H  I  L  L  L  T  S  I  I  C  *  Y  A  F  C  Q  L  E  V  E  C  F  H  H  P  S  L  N  F   </first_frame>
            <second_frame>  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  :  Q  D  K  V  T  W  P  S  Q  Q  R  L  L  V  K  V  L  N  P  Y  P  P  Q  V  L  L  N  Q  *  R  I  F :   G  T  T  L  K  T  G  L  L  *  L  G  W  E  L  L  L  L  L  V  S  G  L  L  Q  I  L  W  R :   Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T  F  F  F  L  I  Y  C  F  L  H  L  *  F  V  N  M  P  F  A  N  W  K  *  S  A  F  T  I  P  L  S  I  S  </second_frame>
            <third_frame>   A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  H :   K  T  R  S  P  G  H  H  S  K  G  Y  *  *  K  F  *  I  L  I  L  P  K  C  C  *  I  S  K  E  Y   : L  G  Q  P  *  R  P  D  C  C  N  W  V  G  N  C  C  Y  C  W  F  L  G  C  F  K  F  C  G   : G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q  H  F  F  S  S  Y  T  A  S  Y  I  Y  N  L  L  I  C  L  L  P  T  G  S  R  V  L  S  P  S  L  S  Q  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66543" stop="66396"/>
                    <exon start="65674" stop="65580"/>
                    <exon start="65216" stop="65130"/>
                    <exon start="64769" stop="64707"/>
                    <exon start="64539" stop="64502"/>
                    <exon start="64195" stop="64141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTTRQGHLAITAKATSESSESLSSPSVVKSVKNIWDNPEDRIAVIGLGIAAIVGFWAASNFVAAIDSLPLIPGVFEFIGILFSTWFVYRYLLFKPNRQELFQGINKSISDILGQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64126" stop="63932"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDTVHVVLLYPSITKMLNHFTDEMISSEMSQHFFSSYTASYIYNLLICLLPTGSRVLSPSLSQFP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66615" e_stop="66396"/>
            <exon e_start="65674" e_stop="65580"/>
            <exon e_start="65216" e_stop="65130"/>
            <exon e_start="64769" e_stop="64707"/>
            <exon e_start="64539" e_stop="64502"/>
            <exon e_start="64195" e_stop="63985"/>
            <exon e_start="62456" e_stop="62401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="0.941"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.607"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="66615" e_stop="66396" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65674" e_stop="65580" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65216" e_stop="65130" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64769" e_stop="64707" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64539" e_stop="64502" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="64195" e_stop="63985" e_length="211"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63984" i_stop="62457" i_length="1528"/>
          </intron>
          <exon e_serial="7" e_score="0.607">
            <gDNA_exon_boundary e_start="62456" e_stop="62401" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66615" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66583" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66525" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="63985"/>
              <exon start="62456" stop="62401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66515" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434923" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65673" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA : CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT : TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG : GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATAT : TAATAATAGTTGATTAATCATAAAAAAAAAAAAATAACCATGTACGAATACAAAAA</gDNA_template>
            <first_frame> W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T   : T  R  Q  G  H  L  A  I  T  A  K  A  T  S  E  S  S  E  S  L  S  S  P  S  V  V  K  S  V  K  N  I  :  W  D  N  P  E  D  R  I  A  V  I  G  L  G  I  A  A  I  V  G  F  W  A  A  S  N  F  V  A  :  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  I  F  F  P  H  I  L  L  L  T  S  I  I  C  *  Y  :  *  *  *  L  I  N  H  K  K  K  K  I  T  M  Y  E  Y  K   </first_frame>
            <second_frame>  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  :  Q  D  K  V  T  W  P  S  Q  Q  R  L  L  V  K  V  L  N  P  Y  P  P  Q  V  L  L  N  Q  *  R  I  F :   G  T  T  L  K  T  G  L  L  *  L  G  W  E  L  L  L  L  L  V  S  G  L  L  Q  I  L  W  R :   Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T  F  F  F  L  I  Y  C  F  L  H  L  *  F  V  N  I :   N  N  S  *  L  I  I  K  K  K  K  *  P  C  T  N  T  K  </second_frame>
            <third_frame>   A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  H :   K  T  R  S  P  G  H  H  S  K  G  Y  *  *  K  F  *  I  L  I  L  P  K  C  C  *  I  S  K  E  Y   : L  G  Q  P  *  R  P  D  C  C  N  W  V  G  N  C  C  Y  C  W  F  L  G  C  F  K  F  C  G   : G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q  H  F  F  S  S  Y  T  A  S  Y  I  Y  N  L  L  I   : L  I  I  V  D  *  S  *  K  K  K  N  N  H  V  R  I  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66543" stop="66396"/>
                    <exon start="65674" stop="65580"/>
                    <exon start="65216" stop="65130"/>
                    <exon start="64769" stop="64707"/>
                    <exon start="64539" stop="64502"/>
                    <exon start="64195" stop="64141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTTRQGHLAITAKATSESSESLSSPSVVKSVKNIWDNPEDRIAVIGLGIAAIVGFWAASNFVAAIDSLPLIPGVFEFIGILFSTWFVYRYLLFKPNRQELFQGINKSISDILGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="66615" e_stop="66396"/>
            <exon e_start="65674" e_stop="65580"/>
            <exon e_start="65216" e_stop="65130"/>
            <exon e_start="64769" e_stop="64707"/>
            <exon e_start="64539" e_stop="64502"/>
            <exon e_start="64195" e_stop="63950"/>
            <exon e_start="62441" e_stop="62402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="0.941"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.984"/>
          <exon-only e_score="0.675"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="66615" e_stop="66396" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65674" e_stop="65580" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65216" e_stop="65130" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64769" e_stop="64707" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64539" e_stop="64502" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="64195" e_stop="63950" e_length="246"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63949" i_stop="62442" i_length="1508"/>
          </intron>
          <exon e_serial="7" e_score="0.675">
            <gDNA_exon_boundary e_start="62441" e_stop="62402" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66615" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66583" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66537" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="63950"/>
              <exon start="62441" stop="62402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548361" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66515" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434923" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65673" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA : CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT : TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG : GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCA : AATCATAAAAAAAAAAAAATAACCATGTACGAATACAAAA</gDNA_template>
            <first_frame> W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T   : T  R  Q  G  H  L  A  I  T  A  K  A  T  S  E  S  S  E  S  L  S  S  P  S  V  V  K  S  V  K  N  I  :  W  D  N  P  E  D  R  I  A  V  I  G  L  G  I  A  A  I  V  G  F  W  A  A  S  N  F  V  A  :  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  I  F  F  P  H  I  L  L  L  T  S  I  I  C  *  Y  A  F  C  Q  L  E  V  E  C  F  H  Q :   I  I  K  K  K  K  *  P  C  T  N  T  K </first_frame>
            <second_frame>  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  :  Q  D  K  V  T  W  P  S  Q  Q  R  L  L  V  K  V  L  N  P  Y  P  P  Q  V  L  L  N  Q  *  R  I  F :   G  T  T  L  K  T  G  L  L  *  L  G  W  E  L  L  L  L  L  V  S  G  L  L  Q  I  L  W  R :   Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T  F  F  F  L  I  Y  C  F  L  H  L  *  F  V  N  M  P  F  A  N  W  K  *  S  A  F  T   : K  S  *  K  K  K  N  N  H  V  R  I  Q   </second_frame>
            <third_frame>   A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  H :   K  T  R  S  P  G  H  H  S  K  G  Y  *  *  K  F  *  I  L  I  L  P  K  C  C  *  I  S  K  E  Y   : L  G  Q  P  *  R  P  D  C  C  N  W  V  G  N  C  C  Y  C  W  F  L  G  C  F  K  F  C  G   : G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q  H  F  F  S  S  Y  T  A  S  Y  I  Y  N  L  L  I  C  L  L  P  T  G  S  R  V  L  S  P  :  N  H  K  K  K  K  I  T  M  Y  E  Y  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66543" stop="66396"/>
                    <exon start="65674" stop="65580"/>
                    <exon start="65216" stop="65130"/>
                    <exon start="64769" stop="64707"/>
                    <exon start="64539" stop="64502"/>
                    <exon start="64195" stop="64141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTTRQGHLAITAKATSESSESLSSPSVVKSVKNIWDNPEDRIAVIGLGIAAIVGFWAASNFVAAIDSLPLIPGVFEFIGILFSTWFVYRYLLFKPNRQELFQGINKSISDILGQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64126" stop="63950"/>
                    <exon start="62441" stop="62403"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDTVHVVLLYPSITKMLNHFTDEMISSEMSQHFFSSYTASYIYNLLICLLPTGSRVLSPNHKKKKITMYEYK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="66615" e_stop="66396"/>
            <exon e_start="65674" e_stop="65580"/>
            <exon e_start="65216" e_stop="65130"/>
            <exon e_start="64769" e_stop="64707"/>
            <exon e_start="64539" e_stop="64502"/>
            <exon e_start="64195" e_stop="64018"/>
            <exon e_start="62437" e_stop="62418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="0.941"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="66615" e_stop="66396" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65674" e_stop="65580" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65216" e_stop="65130" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64769" e_stop="64707" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64539" e_stop="64502" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="64195" e_stop="64018" e_length="178"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64017" i_stop="62438" i_length="1580"/>
          </intron>
          <exon e_serial="7" e_score="0.900">
            <gDNA_exon_boundary e_start="62437" e_stop="62418" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66615" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66583" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66532" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64018"/>
              <exon start="62437" stop="62418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66515" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434923" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65673" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA : CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT : TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG : GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCAT : ATAAAAAAAAAAAAATAACC</gDNA_template>
            <first_frame> W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T   : T  R  Q  G  H  L  A  I  T  A  K  A  T  S  E  S  S  E  S  L  S  S  P  S  V  V  K  S  V  K  N  I  :  W  D  N  P  E  D  R  I  A  V  I  G  L  G  I  A  A  I  V  G  F  W  A  A  S  N  F  V  A  :  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  I  F  F  P  H  :  I  K  K  K  K  *   </first_frame>
            <second_frame>  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  :  Q  D  K  V  T  W  P  S  Q  Q  R  L  L  V  K  V  L  N  P  Y  P  P  Q  V  L  L  N  Q  *  R  I  F :   G  T  T  L  K  T  G  L  L  *  L  G  W  E  L  L  L  L  L  V  S  G  L  L  Q  I  L  W  R :   Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T  F  F  F  L  I :   *  K  K  K  N  N  </second_frame>
            <third_frame>   A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  H :   K  T  R  S  P  G  H  H  S  K  G  Y  *  *  K  F  *  I  L  I  L  P  K  C  C  *  I  S  K  E  Y   : L  G  Q  P  *  R  P  D  C  C  N  W  V  G  N  C  C  Y  C  W  F  L  G  C  F  K  F  C  G   : G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q  H  F  F  S  S   : Y  K  K  K  K  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66543" stop="66396"/>
                    <exon start="65674" stop="65580"/>
                    <exon start="65216" stop="65130"/>
                    <exon start="64769" stop="64707"/>
                    <exon start="64539" stop="64502"/>
                    <exon start="64195" stop="64141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTTRQGHLAITAKATSESSESLSSPSVVKSVKNIWDNPEDRIAVIGLGIAAIVGFWAASNFVAAIDSLPLIPGVFEFIGILFSTWFVYRYLLFKPNRQELFQGINKSISDILGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="66615" e_stop="66396"/>
            <exon e_start="65674" e_stop="65580"/>
            <exon e_start="65216" e_stop="65130"/>
            <exon e_start="64769" e_stop="64707"/>
            <exon e_start="64539" e_stop="64502"/>
            <exon e_start="64195" e_stop="64033"/>
            <exon e_start="62435" e_stop="62420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="0.941"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="66615" e_stop="66396" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65674" e_stop="65580" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65216" e_stop="65130" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64769" e_stop="64707" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64539" e_stop="64502" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="64195" e_stop="64033" e_length="163"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64032" i_stop="62436" i_length="1597"/>
          </intron>
          <exon e_serial="7" e_score="0.938">
            <gDNA_exon_boundary e_start="62435" e_stop="62420" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66615" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66583" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66515" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66457" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64033"/>
              <exon start="62435" stop="62420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397324" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65673" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA : CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT : TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG : GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAAC : AAAAAAAAAAAAATAA</gDNA_template>
            <first_frame> W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T   : T  R  Q  G  H  L  A  I  T  A  K  A  T  S  E  S  S  E  S  L  S  S  P  S  V  V  K  S  V  K  N  I  :  W  D  N  P  E  D  R  I  A  V  I  G  L  G  I  A  A  I  V  G  F  W  A  A  S  N  F  V  A  :  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  :  K  K  K  K  I  </first_frame>
            <second_frame>  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  :  Q  D  K  V  T  W  P  S  Q  Q  R  L  L  V  K  V  L  N  P  Y  P  P  Q  V  L  L  N  Q  *  R  I  F :   G  T  T  L  K  T  G  L  L  *  L  G  W  E  L  L  L  L  L  V  S  G  L  L  Q  I  L  W  R :   Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T :   K  K  K  K  * </second_frame>
            <third_frame>   A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  H :   K  T  R  S  P  G  H  H  S  K  G  Y  *  *  K  F  *  I  L  I  L  P  K  C  C  *  I  S  K  E  Y   : L  G  Q  P  *  R  P  D  C  C  N  W  V  G  N  C  C  Y  C  W  F  L  G  C  F  K  F  C  G   : G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q   : Q  K  K  K  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66543" stop="66396"/>
                    <exon start="65674" stop="65580"/>
                    <exon start="65216" stop="65130"/>
                    <exon start="64769" stop="64707"/>
                    <exon start="64539" stop="64502"/>
                    <exon start="64195" stop="64141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTTRQGHLAITAKATSESSESLSSPSVVKSVKNIWDNPEDRIAVIGLGIAAIVGFWAASNFVAAIDSLPLIPGVFEFIGILFSTWFVYRYLLFKPNRQELFQGINKSISDILGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="66615" e_stop="66396"/>
            <exon e_start="65674" e_stop="65580"/>
            <exon e_start="65216" e_stop="65130"/>
            <exon e_start="64769" e_stop="64707"/>
            <exon e_start="64539" e_stop="64502"/>
            <exon e_start="64195" e_stop="64033"/>
            <exon e_start="63185" e_stop="63132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="0.941"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.574"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="66615" e_stop="66396" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65674" e_stop="65580" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65216" e_stop="65130" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64769" e_stop="64707" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64539" e_stop="64502" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64195" e_stop="64033" e_length="163"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64032" i_stop="63186" i_length="847"/>
          </intron>
          <exon e_serial="7" e_score="0.574">
            <gDNA_exon_boundary e_start="63185" e_stop="63132" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66615" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66583" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66518" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64033"/>
              <exon start="63185" stop="63132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66515" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65673" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA : CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT : TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG : GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAAC : AAAAAATCAAAACGAATAATAATTCAAATCAACTCGATTAAAAAAATTGATATT</gDNA_template>
            <first_frame> W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T   : T  R  Q  G  H  L  A  I  T  A  K  A  T  S  E  S  S  E  S  L  S  S  P  S  V  V  K  S  V  K  N  I  :  W  D  N  P  E  D  R  I  A  V  I  G  L  G  I  A  A  I  V  G  F  W  A  A  S  N  F  V  A  :  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  :  K  K  S  K  R  I  I  I  Q  I  N  S  I  K  K  I  D  I </first_frame>
            <second_frame>  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  :  Q  D  K  V  T  W  P  S  Q  Q  R  L  L  V  K  V  L  N  P  Y  P  P  Q  V  L  L  N  Q  *  R  I  F :   G  T  T  L  K  T  G  L  L  *  L  G  W  E  L  L  L  L  L  V  S  G  L  L  Q  I  L  W  R :   Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T :   K  N  Q  N  E  *  *  F  K  S  T  R  L  K  K  L  I   </second_frame>
            <third_frame>   A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  H :   K  T  R  S  P  G  H  H  S  K  G  Y  *  *  K  F  *  I  L  I  L  P  K  C  C  *  I  S  K  E  Y   : L  G  Q  P  *  R  P  D  C  C  N  W  V  G  N  C  C  Y  C  W  F  L  G  C  F  K  F  C  G   : G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q   : Q  K  I  K  T  N  N  N  S  N  Q  L  D  *  K  N  *  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66543" stop="66396"/>
                    <exon start="65674" stop="65580"/>
                    <exon start="65216" stop="65130"/>
                    <exon start="64769" stop="64707"/>
                    <exon start="64539" stop="64502"/>
                    <exon start="64195" stop="64141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTTRQGHLAITAKATSESSESLSSPSVVKSVKNIWDNPEDRIAVIGLGIAAIVGFWAASNFVAAIDSLPLIPGVFEFIGILFSTWFVYRYLLFKPNRQELFQGINKSISDILGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="66671" e_stop="65849"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="66671" e_stop="65849" e_length="823"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66671" stop="66133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66590" stop="66060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66469" stop="65849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66469" stop="66059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCGGTCTTCTGATTCCCACATTCGGCTTTTGCTCTTATTATTGTTGTGGCGTATGTGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGC</gDNA_template>
            <first_frame> A  G  L  L  I  P  T  F  G  F  C  S  Y  Y  C  C  G  V  C  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  V  S  F  L  L  Q  H  S  Q  *  Q  F  Q  S  A  I  S  L  I  E  V  *  F  *  G  I  V  L  Q  F  H  R  *  K  S  D  Q  *  *  Y  R  A  C  N  I  D  D  A  T  F  H  *  F  F  F  L  N  D  C  S  V  W  A  S  I  K  L  P  V  V  F  A  T  F  H  *  I  V  *  R  L  V  W  M  F  L  V  M  *  C  V  *  S  I  E  R  T  *  Q  E  E  L  E  I  L  N  E  H  S  S  F  T  S  K  R  N  V  S  I  P  Y  L  L  L  *  I  E  S  K  *  A  C  E  R  G  Y  P  E  F  V  I  D  F  W  L  L  W  N  G  G  G  *  T  C  K  *  N  I  H  E  G  S  F  D  M  R  L  Q  N  N  *  Y  C  *  T  R  *  N  *  L  *  K  </first_frame>
            <second_frame>  P  V  F  *  F  P  H  S  A  F  A  L  I  I  V  V  A  Y  V  A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  Q  *  V  F  F  C  N  I  H  N  N  S  F  S  L  Q  L  V  L  L  R  Y  N  F  E  V  L  C  C  N  F  I  G  E  N  P  I  S  S  N  T  G  L  V  T  S  M  M  L  L  F  T  S  F  F  F  *  M  T  V  V  S  G  P  R  L  N  Y  L  L  F  L  L  H  F  T  R  *  F  K  D  *  Y  G  C  F  S  L  C  S  V  F  S  P  *  R  G  L  N  K  K  S  W  R  Y  S  M  N  I  H  H  L  L  A  K  E  M  F  L  F  R  I  C  Y  Y  R  *  K  V  N  E  P  V  S  E  A  I  L  N  L  L  L  T  F  G  Y  Y  G  M  E  V  D  E  P  V  N  R  T  F  M  K  V  R  L  I  C  G  Y  R  T  I  N  T  A  K  P  G  K  I  D  F  E  S </second_frame>
            <third_frame>   R  S  S  D  S  H  I  R  L  L  L  L  L  L  L  W  R  M  W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T  S  K  F  S  S  A  T  F  T  I  T  V  S  V  C  N  *  S  Y  *  G  I  I  L  R  Y  C  V  A  I  S  *  V  K  I  R  S  V  V  I  P  G  L  *  H  R  *  C  Y  F  S  L  V  F  F  F  K  *  L  *  C  L  G  L  D  *  I  T  C  C  F  C  Y  I  S  L  D  S  L  K  T  S  M  D  V  S  R  Y  V  V  C  L  V  H  R  E  D  L  T  R  R  V  G  D  T  Q  *  T  F  I  I  Y  *  Q  K  K  C  F  Y  S  V  F  V  T  I  D  R  K  *  M  S  L  *  A  R  L  S  *  I  C  Y  *  L  L  A  T  M  E  W  R  W  M  N  L  *  I  E  H  S  *  R  F  V  *  Y  A  V  T  E  Q  L  I  L  L  N  Q  V  K  L  T  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66543" stop="66346"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTSKFSSATFTITVSVCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="64782" e_stop="64707"/>
            <exon e_start="64539" e_stop="64502"/>
            <exon e_start="64195" e_stop="63798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="0.934"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="64782" e_stop="64707" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64539" e_stop="64502" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="64195" e_stop="63798" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64782" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="63798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTT</gDNA_template>
            <first_frame> K  F  *  I  G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q  H  F  F  S  S  Y  T  A  S  Y  I  Y  N  L  L  I  C  L  L  P  T  G  S  R  V  L  S  P  S  L  S  Q  F  P  M  V  F  Y  C  L  P  *  S  D  *  S  N  E  N  S  L  A  S  L  S  S  R  I  *  T  K  S  G  Y  P  N  L  F  M  I  *  Y  L  V  F  I  *  N   </first_frame>
            <second_frame>  S  F  E  *  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  I  F  F  P  H  I  L  L  L  T  S  I  I  C  *  Y  A  F  C  Q  L  E  V  E  C  F  H  H  P  S  L  N  F  L  W  F  S  T  V  C  H  S  Q  T  D  P  T  K  T  L  *  Q  V  *  V  H  V  Y  K  P  K  V  G  T  L  I  C  L  *  F  D  I  *  Y  L  F  K  I  </second_frame>
            <third_frame>   V  L  N  R  Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T  F  F  F  L  I  Y  C  F  L  H  L  *  F  V  N  M  P  F  A  N  W  K  *  S  A  F  T  I  P  L  S  I  S  Y  G  F  L  L  S  A  I  V  R  L  I  Q  R  K  L  F  S  K  F  E  F  T  Y  I  N  Q  K  W  V  P  *  F  V  Y  D  L  I  F  S  I  Y  L  K  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64126" stop="63908"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDTVHVVLLYPSITKMLNHFTDEMISSEMSQHFFSSYTASYIYNLLICLLPTGSRVLSPSLSQFPMVFYCLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="75530" PGL_stop="76854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75530" e_stop="75735"/>
            <exon e_start="76221" e_stop="76347"/>
            <exon e_start="76528" e_stop="76854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75530" e_stop="75735" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.994">
            <gDNA_intron_boundary i_start="75736" i_stop="76220" i_length="485"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76221" e_stop="76347" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.956">
            <gDNA_intron_boundary i_start="76348" i_stop="76527" i_length="180"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76528" e_stop="76854" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75530" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75574" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75575" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75575" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75575" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75575" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75575" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75577" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75578" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75579" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75581" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75581" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75583" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75585" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75585" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75586" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75586" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75587" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75587" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75588" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75589" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429666" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75608" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75616" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75616" stop="75735"/>
              <exon start="76221" stop="76347"/>
              <exon start="76528" stop="76846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76249" stop="76347"/>
              <exon start="76528" stop="76832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76530" stop="76854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76531" stop="76832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76605" stop="76853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACCATAACATATTCACAATCACATCATTTTCTGAGCCACAGGTAATTTCCTAGTCTGAAGCAGAGCCCAATAATGGCGTCTATGGCAACTCTTACTGCAGTAAAGCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAG : GGCTGGTGCTGTGGTTGCAAAATATGGTGACAAGAGTGTATATTTTGACTTGGAGGATTTGGGCAACACAACTGGTCAGTGGGACTTGTATGGATCAGATGCTCCTTCACCTTACAACTCCCTTCAG : AGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAAG</gDNA_template>
            <first_frame> K  T  I  T  Y  S  Q  S  H  H  F  L  S  H  R  *  F  P  S  L  K  Q  S  P  I  M  A  S  M  A  T  L  T  A  V  K  P  T  S  S  V  K  G  L  A  G  S  S  I  A  G  T  K  L  N  V  K  S  S  R  L  N  V  K  Q  S  K  S  R :   A  G  A  V  V  A  K  Y  G  D  K  S  V  Y  F  D  L  E  D  L  G  N  T  T  G  Q  W  D  L  Y  G  S  D  A  P  S  P  Y  N  S  L  Q  :  S  K  F  F  E  T  F  A  A  P  F  T  K  R  G  L  L  L  K  F  L  I  L  G  G  G  S  T  L  A  Y  F  S  S  T  A  S  G  D  I  L  P  I  K  K  G  P  Q  L  P  P  K  L  G  P  R  G  K  I  *  L  L  P  N  Q  N  F  F  T  F  I  L  L  L  M  Y  H  L  Y  N  S  L  *  V  Y  I  K  A  Y  L  R  P  L  L  Q  Q  D  K  S  S  G  K  F  K  A  L  L  S  K </first_frame>
            <second_frame>  K  P  *  H  I  H  N  H  I  I  F  *  A  T  G  N  F  L  V  *  S  R  A  Q  *  W  R  L  W  Q  L  L  L  Q  *  S  P  P  V  V  S  R  A  *  L  E  A  P  L  L  E  L  S  *  M  L  N  H  L  A  S  M  *  S  N  L  N  P   : G  L  V  L  W  L  Q  N  M  V  T  R  V  Y  I  L  T  W  R  I  W  A  T  Q  L  V  S  G  T  C  M  D  Q  M  L  L  H  L  T  T  P  F  R :   A  S  S  L  R  H  L  L  L  L  S  Q  R  E  V  C  C  S  S  S  *  Y  W  E  V  A  Q  L  L  L  T  S  V  Q  L  H  Q  E  I  S  Y  Q  S  R  K  A  P  N  F  H  Q  S  S  V  H  V  A  R  S  N  C  F  P  I  K  I  S  L  P  S  F  C  Y  *  C  I  I  Y  I  T  A  C  K  C  T  L  K  L  T  S  D  L  C  Y  N  K  I  N  L  L  E  S  S  K  H  C  F  R   </second_frame>
            <third_frame>   N  H  N  I  F  T  I  T  S  F  S  E  P  Q  V  I  S  *  S  E  A  E  P  N  N  G  V  Y  G  N  S  Y  C  S  K  A  H  Q  *  C  Q  G  P  S  W  K  L  H  C  W  N  *  A  E  C  *  I  I  S  P  Q  C  E  A  I  *  I  Q  :  G  W  C  C  G  C  K  I  W  *  Q  E  C  I  F  *  L  G  G  F  G  Q  H  N  W  S  V  G  L  V  W  I  R  C  S  F  T  L  Q  L  P  S   : E  Q  V  L  *  D  I  C  C  S  F  H  K  E  R  S  V  A  Q  V  L  D  I  G  R  W  L  N  S  C  L  L  Q  F  N  C  I  R  R  Y  P  T  N  Q  E  R  P  P  T  S  T  K  A  R  S  T  W  Q  D  L  I  A  S  Q  S  K  F  L  Y  L  H  F  V  I  D  V  S  S  I  *  Q  L  V  S  V  H  *  S  L  P  Q  T  S  V  T  T  R  *  I  F  W  K  V  Q  S  I  A  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75578" stop="75735"/>
                    <exon start="76221" stop="76347"/>
                    <exon start="76528" stop="76707"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPSLKQSPIMASMATLTAVKPTSSVKGLAGSSIAGTKLNVKSSRLNVKQSKSRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSSTASGDILPIKKGPQLPPKLGPRGKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76523" e_stop="76854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="76523" e_stop="76854" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76523" stop="76853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76530" stop="76854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76531" stop="76832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76605" stop="76853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTCTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCAACTCTTGCTTACTTCAGTTCAACTGCATCAGGAGATATCCTACCAATCAAGAAAGGCCCCCAACTTCCACCAAAGCTCGGTCCACGTGGCAAGATCTAATTGCTTCCCAATCAAAATTTCTTTACCTTCATTTTGTTATTGATGTATCATCTATATAACAGCTTGTAAGTGTACATTAAAGCTTACCTCAGACCTCTGTTACAACAAGATAAATCTTCTGGAAAGTTCAAAGCATTGCTTTCGAAG</gDNA_template>
            <first_frame> G  R  A  S  S  L  R  H  L  L  L  L  S  Q  R  E  V  C  C  S  S  S  *  Y  W  E  V  A  Q  L  L  L  T  S  V  Q  L  H  Q  E  I  S  Y  Q  S  R  K  A  P  N  F  H  Q  S  S  V  H  V  A  R  S  N  C  F  P  I  K  I  S  L  P  S  F  C  Y  *  C  I  I  Y  I  T  A  C  K  C  T  L  K  L  T  S  D  L  C  Y  N  K  I  N  L  L  E  S  S  K  H  C  F  R   </first_frame>
            <second_frame>  V  E  Q  V  L  *  D  I  C  C  S  F  H  K  E  R  S  V  A  Q  V  L  D  I  G  R  W  L  N  S  C  L  L  Q  F  N  C  I  R  R  Y  P  T  N  Q  E  R  P  P  T  S  T  K  A  R  S  T  W  Q  D  L  I  A  S  Q  S  K  F  L  Y  L  H  F  V  I  D  V  S  S  I  *  Q  L  V  S  V  H  *  S  L  P  Q  T  S  V  T  T  R  *  I  F  W  K  V  Q  S  I  A  F  E  </second_frame>
            <third_frame>   *  S  K  F  F  E  T  F  A  A  P  F  T  K  R  G  L  L  L  K  F  L  I  L  G  G  G  S  T  L  A  Y  F  S  S  T  A  S  G  D  I  L  P  I  K  K  G  P  Q  L  P  P  K  L  G  P  R  G  K  I  *  L  L  P  N  Q  N  F  F  T  F  I  L  L  L  M  Y  H  L  Y  N  S  L  *  V  Y  I  K  A  Y  L  R  P  L  L  Q  Q  D  K  S  S  G  K  F  K  A  L  L  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76542" stop="76766"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DICCSFHKERSVAQVLDIGRWLNSCLLQFNCIRRYPTNQERPPTSTKARSTWQDLIASQSKFLYLHFVIDVSSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="84441" PGL_stop="79706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84025" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="81877"/>
            <exon e_start="81815" e_stop="81756"/>
            <exon e_start="81022" e_stop="81003"/>
            <exon e_start="79914" e_stop="79892"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.866" e_score="0.700"/>
          <exon-intron don_prob="0.535" acc_prob="0.000" e_score="0.600"/>
          <exon-only e_score="0.696"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="84025" e_stop="83900" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82160" e_stop="81877" e_length="284"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81876" i_stop="81816" i_length="61"/>
          </intron>
          <exon e_serial="5" e_score="0.700">
            <gDNA_exon_boundary e_start="81815" e_stop="81756" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.866">
            <gDNA_intron_boundary i_start="81755" i_stop="81023" i_length="733"/>
          </intron>
          <exon e_serial="6" e_score="0.600">
            <gDNA_exon_boundary e_start="81022" e_stop="81003" e_length="20"/>
          </exon>
          <intron i_serial="6" don_prob="0.535" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81002" i_stop="79915" i_length="1088"/>
          </intron>
          <exon e_serial="7" e_score="0.696">
            <gDNA_exon_boundary e_start="79914" e_stop="79892" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84025" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83971" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83969" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83968" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83966" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83964" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83963" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83956" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83951" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83947" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83942" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83941" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83936" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83936" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83933" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81877"/>
              <exon start="81815" stop="81756"/>
              <exon start="81022" stop="81003"/>
              <exon start="79914" stop="79892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416837" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286831" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83928" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83906" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83901" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83613" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83589" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83581" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83570" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83532" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609071" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83364" stop="83300"/>
              <exon start="82160" stop="81917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83356" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83322" stop="83300"/>
              <exon start="82160" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTG : GTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCT : GCCGCCTTGAGCGATGCAAC : AAAAATCACAAAAAAAAATACAT</gDNA_template>
            <first_frame> L  E  T  T  L  K  A  F  F  L  H  Y  Q  T  I  S  T  A  *  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  L  V  G  S  D  L  P  V  *  F  L  S  Y  L  V  :  V  V  Q  L  A  Y  F  K  S  G  A  V  *  I  N  D  A  Q  C  A  :  A  A  L  S  D  A  T :   K  I  T  K  K  N  T  </first_frame>
            <second_frame>  *  K  Q  P  *  K  P  S  S  F  T  T  K  L  *  A  L  P  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  N  L  L  D  L  I  Y  L  S  S  F  Y  L  T  L  W :   L  F  N  L  L  I  S  N  L  V  L  Y  E  *  T  T  P  N  V  L :   P  P  *  A  M  Q   : Q  K  S  Q  K  K  I  H </second_frame>
            <third_frame>   R  N  N  P  K  S  L  L  P  S  L  P  N  Y  K  H  C  L  D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  T  C  W  I  *  S  T  C  L  V  F  I  L  P  C   : G  C  S  T  C  L  F  Q  I  W  C  C  M  N  K  R  R  P  M  C   : C  R  L  E  R  C  N  :  K  N  H  K  K  K  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="84441" e_stop="84397"/>
            <exon e_start="84226" e_stop="84163"/>
            <exon e_start="83970" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="81877"/>
            <exon e_start="81815" e_stop="81756"/>
            <exon e_start="81022" e_stop="81003"/>
            <exon e_start="79914" e_stop="79892"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.893" acc_prob="0.330" e_score="0.511"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.531"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.866" e_score="0.700"/>
          <exon-intron don_prob="0.535" acc_prob="0.000" e_score="0.600"/>
          <exon-only e_score="0.696"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.511">
            <gDNA_exon_boundary e_start="84441" e_stop="84397" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.893" acc_prob="0.330">
            <gDNA_intron_boundary i_start="84396" i_stop="84227" i_length="170"/>
          </intron>
          <exon e_serial="2" e_score="0.531">
            <gDNA_exon_boundary e_start="84226" e_stop="84163" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84162" i_stop="83971" i_length="192"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83970" e_stop="83900" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82160" e_stop="81877" e_length="284"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81876" i_stop="81816" i_length="61"/>
          </intron>
          <exon e_serial="7" e_score="0.700">
            <gDNA_exon_boundary e_start="81815" e_stop="81756" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.866">
            <gDNA_intron_boundary i_start="81755" i_stop="81023" i_length="733"/>
          </intron>
          <exon e_serial="8" e_score="0.600">
            <gDNA_exon_boundary e_start="81022" e_stop="81003" e_length="20"/>
          </exon>
          <intron i_serial="8" don_prob="0.535" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81002" i_stop="79915" i_length="1088"/>
          </intron>
          <exon e_serial="9" e_score="0.696">
            <gDNA_exon_boundary e_start="79914" e_stop="79892" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84441" stop="84397"/>
              <exon start="84226" stop="84163"/>
              <exon start="83970" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83969" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83968" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83966" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83964" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83963" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83956" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83951" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83947" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83942" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83941" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83936" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83936" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83933" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81877"/>
              <exon start="81815" stop="81756"/>
              <exon start="81022" stop="81003"/>
              <exon start="79914" stop="79892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416837" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286831" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83928" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83906" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83901" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83613" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83589" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83581" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83570" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83532" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609071" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83364" stop="83300"/>
              <exon start="82160" stop="81917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83356" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83322" stop="83300"/>
              <exon start="82160" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAAATTGAGATAATTTAGATATGTGAAGAGGATATAGATCAA : GTGGGTTTAAAGAGGTAAAGGTATACCGAAAAAGGAACCAGAGTGGTGATTAAGCAAGATAGAA : AGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTGATCTACCTGTCTAGTTTTTATCTTACCTTGTG : GTTGTTCAACTTGCTTATTTCAAATCTGGTGCTGTATGAATAAACGACGCCCAATGTGCT : GCCGCCTTGAGCGATGCAAC : AAAAATCACAAAAAAAAATACAT</gDNA_template>
            <first_frame> S  K  I  E  I  I  *  I  C  E  E  D  I  D  Q  :  V  G  L  K  R  *  R  Y  T  E  K  G  T  R  V  V  I  K  Q  D  R   : K  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  L  V  G  S  D  L  P  V  *  F  L  S  Y  L  V  :  V  V  Q  L  A  Y  F  K  S  G  A  V  *  I  N  D  A  Q  C  A  :  A  A  L  S  D  A  T :   K  I  T  K  K  N  T  </first_frame>
            <second_frame>  A  K  L  R  *  F  R  Y  V  K  R  I  *  I  K :   W  V  *  R  G  K  G  I  P  K  K  E  P  E  W  *  L  S  K  I  E  :  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  N  L  L  D  L  I  Y  L  S  S  F  Y  L  T  L  W :   L  F  N  L  L  I  S  N  L  V  L  Y  E  *  T  T  P  N  V  L :   P  P  *  A  M  Q   : Q  K  S  Q  K  K  I  H </second_frame>
            <third_frame>   Q  N  *  D  N  L  D  M  *  R  G  Y  R  S   : S  G  F  K  E  V  K  V  Y  R  K  R  N  Q  S  G  D  *  A  R  *  K :   D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  T  C  W  I  *  S  T  C  L  V  F  I  L  P  C   : G  C  S  T  C  L  F  Q  I  W  C  C  M  N  K  R  R  P  M  C   : C  R  L  E  R  C  N  :  K  N  H  K  K  K  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="84025" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="81909"/>
            <exon e_start="81517" e_stop="81505"/>
            <exon e_start="81426" e_stop="81399"/>
            <exon e_start="81234" e_stop="81180"/>
            <exon e_start="81022" e_stop="81003"/>
            <exon e_start="80731" e_stop="80719"/>
            <exon e_start="80647" e_stop="80637"/>
            <exon e_start="80290" e_stop="80243"/>
            <exon e_start="79929" e_stop="79899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.688" e_score="0.692"/>
          <exon-intron don_prob="0.561" acc_prob="0.798" e_score="0.393"/>
          <exon-intron don_prob="0.000" acc_prob="0.866" e_score="0.545"/>
          <exon-intron don_prob="0.535" acc_prob="0.000" e_score="0.550"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.769"/>
          <exon-intron don_prob="0.900" acc_prob="0.594" e_score="0.636"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.438"/>
          <exon-only e_score="0.742"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="84025" e_stop="83900" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82160" e_stop="81909" e_length="252"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81908" i_stop="81518" i_length="391"/>
          </intron>
          <exon e_serial="5" e_score="0.692">
            <gDNA_exon_boundary e_start="81517" e_stop="81505" e_length="13"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.688">
            <gDNA_intron_boundary i_start="81504" i_stop="81427" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.393">
            <gDNA_exon_boundary e_start="81426" e_stop="81399" e_length="28"/>
          </exon>
          <intron i_serial="6" don_prob="0.561" acc_prob="0.798">
            <gDNA_intron_boundary i_start="81398" i_stop="81235" i_length="164"/>
          </intron>
          <exon e_serial="7" e_score="0.545">
            <gDNA_exon_boundary e_start="81234" e_stop="81180" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.866">
            <gDNA_intron_boundary i_start="81179" i_stop="81023" i_length="157"/>
          </intron>
          <exon e_serial="8" e_score="0.550">
            <gDNA_exon_boundary e_start="81022" e_stop="81003" e_length="20"/>
          </exon>
          <intron i_serial="8" don_prob="0.535" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81002" i_stop="80732" i_length="271"/>
          </intron>
          <exon e_serial="9" e_score="0.769">
            <gDNA_exon_boundary e_start="80731" e_stop="80719" e_length="13"/>
          </exon>
          <intron i_serial="9" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80718" i_stop="80648" i_length="71"/>
          </intron>
          <exon e_serial="10" e_score="0.636">
            <gDNA_exon_boundary e_start="80647" e_stop="80637" e_length="11"/>
          </exon>
          <intron i_serial="10" don_prob="0.900" acc_prob="0.594">
            <gDNA_intron_boundary i_start="80636" i_stop="80291" i_length="346"/>
          </intron>
          <exon e_serial="11" e_score="0.438">
            <gDNA_exon_boundary e_start="80290" e_stop="80243" e_length="48"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80242" i_stop="79930" i_length="313"/>
          </intron>
          <exon e_serial="12" e_score="0.742">
            <gDNA_exon_boundary e_start="79929" e_stop="79899" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84025" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83971" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83969" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83968" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83966" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83964" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83963" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83956" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83951" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83947" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83942" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83941" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81909"/>
              <exon start="81517" stop="81505"/>
              <exon start="81426" stop="81399"/>
              <exon start="81234" stop="81180"/>
              <exon start="81022" stop="81003"/>
              <exon start="80731" stop="80719"/>
              <exon start="80647" stop="80637"/>
              <exon start="80290" stop="80243"/>
              <exon start="79929" stop="79899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83936" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83933" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83928" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83906" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83901" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83613" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83589" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83581" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83570" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83532" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609071" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83364" stop="83300"/>
              <exon start="82160" stop="81917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83356" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83322" stop="83300"/>
              <exon start="82160" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTTGTTGGATCTG : TCTCTCTGATCTT : GTTAACTGAACTAACTTTAGGCTACAAG : ATGGTGTTGAGGGCATCGAATTGGGTTGAAGGTAAGGCGTCTAAAATTTCAAATA : GCCGCCTTGAGCGATGCAAC : ATACTATTACTGG : TTATACTGATC : TCAAAGCAAGAGGCCAGTCCTGTTTCTATCATTCTTCAAAACAAACAT : TTCTTCCCTTTTTAGAAAAATCACAAAAAAA</gDNA_template>
            <first_frame> L  E  T  T  L  K  A  F  F  L  H  Y  Q  T  I  S  T  A  *  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  L  V  G  S   : V  S  L  I  L :   L  T  E  L  T  L  G  Y  K  :  M  V  L  R  A  S  N  W  V  E  G  K  A  S  K  I  S  N   : S  R  L  E  R  C  N  :  I  L  L  L   : V  I  L  I  :  S  K  Q  E  A  S  P  V  S  I  I  L  Q  N  K  H  :  F  F  P  F  *  K  N  H  K  K  </first_frame>
            <second_frame>  *  K  Q  P  *  K  P  S  S  F  T  T  K  L  *  A  L  P  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  N  L  L  D  L  :  S  L  *  S   : C  *  L  N  *  L  *  A  T  R :   W  C  *  G  H  R  I  G  L  K  V  R  R  L  K  F  Q  I  :  A  A  L  S  D  A  T :   Y  Y  Y  W  :  L  Y  *  S :   Q  S  K  R  P  V  L  F  L  S  F  F  K  T  N  I :   S  S  L  F  R  K  I  T  K  K </second_frame>
            <third_frame>   R  N  N  P  K  S  L  L  P  S  L  P  N  Y  K  H  C  L  D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  T  C  W  I  C :   L  S  D  L  :  V  N  *  T  N  F  R  L  Q   : D  G  V  E  G  I  E  L  G  *  R  *  G  V  *  N  F  K  * :   P  P  *  A  M  Q   : H  T  I  T  G :   Y  T  D   : L  K  A  R  G  Q  S  C  F  Y  H  S  S  K  Q  T   : F  L  P  F  L  E  K  S  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81921" stop="81909"/>
                    <exon start="81517" stop="81505"/>
                    <exon start="81426" stop="81399"/>
                    <exon start="81234" stop="81180"/>
                    <exon start="81022" stop="81003"/>
                    <exon start="80731" stop="80719"/>
                    <exon start="80647" stop="80637"/>
                    <exon start="80290" stop="80243"/>
                    <exon start="79929" stop="79915"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGSVSLILLTELTLGYKMVLRASNWVEGKASKISNSRLERCNILLLVILISKQEASPVSIILQNKHFFPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="84025" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="81919"/>
            <exon e_start="81468" e_stop="81456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.745" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="84025" e_stop="83900" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82160" e_stop="81919" e_length="242"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.745">
            <gDNA_intron_boundary i_start="81918" i_stop="81469" i_length="450"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="81468" e_stop="81456" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84025" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83971" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83968" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83966" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83964" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83963" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83956" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83951" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83947" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83942" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81919"/>
              <exon start="81468" stop="81459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83936" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83933" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83928" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83906" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83901" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83613" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83604" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81919"/>
              <exon start="81468" stop="81458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277480" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83589" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83581" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83570" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83558" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81919"/>
              <exon start="81468" stop="81456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234896" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83532" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609071" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83356" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83335" stop="83300"/>
              <exon start="82160" stop="81919"/>
              <exon start="81468" stop="81456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229343" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83322" stop="83300"/>
              <exon start="82160" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAACTT : GAAAATGAAGTTA</gDNA_template>
            <first_frame> L  E  T  T  L  K  A  F  F  L  H  Y  Q  T  I  S  T  A  *  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  L  :  E  N  E  V  </first_frame>
            <second_frame>  *  K  Q  P  *  K  P  S  S  F  T  T  K  L  *  A  L  P  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  N  L :   K  M  K  L </second_frame>
            <third_frame>   R  N  N  P  K  S  L  L  P  S  L  P  N  Y  K  H  C  L  D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  T   : *  K  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="84025" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="81921"/>
            <exon e_start="81468" e_stop="81447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.745" e_score="1.000"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="84025" e_stop="83900" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82160" e_stop="81921" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.745">
            <gDNA_intron_boundary i_start="81920" i_stop="81469" i_length="452"/>
          </intron>
          <exon e_serial="5" e_score="0.500">
            <gDNA_exon_boundary e_start="81468" e_stop="81447" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84025" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83971" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83968" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83966" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83964" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83956" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83951" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83942" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83936" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83933" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83929" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
              <exon start="81468" stop="81447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309048" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83928" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83906" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83901" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83613" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83589" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83581" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83570" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83532" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609071" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83356" stop="83300"/>
              <exon start="82160" stop="81921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83322" stop="83300"/>
              <exon start="82160" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAAC : GAAAATGAAGTTATAGCGATGT</gDNA_template>
            <first_frame> L  E  T  T  L  K  A  F  F  L  H  Y  Q  T  I  S  T  A  *  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *   : R  K  *  S  Y  S  D   </first_frame>
            <second_frame>  *  K  Q  P  *  K  P  S  S  F  T  T  K  L  *  A  L  P  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  N  :  E  N  E  V  I  A  M  </second_frame>
            <third_frame>   R  N  N  P  K  S  L  L  P  S  L  P  N  Y  K  H  C  L  D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  T :   K  M  K  L  *  R  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="84025" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="81922"/>
            <exon e_start="81468" e_stop="81460"/>
            <exon e_start="80560" e_stop="80531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.745" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="84025" e_stop="83900" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82160" e_stop="81922" e_length="239"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.745">
            <gDNA_intron_boundary i_start="81921" i_stop="81469" i_length="453"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="81468" e_stop="81460" e_length="9"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81459" i_stop="80561" i_length="899"/>
          </intron>
          <exon e_serial="6" e_score="0.700">
            <gDNA_exon_boundary e_start="80560" e_stop="80531" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84025" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83971" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83966" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83964" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83956" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83951" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83942" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83933" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83928" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83906" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83901" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83613" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83589" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83581" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83570" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83532" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609071" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83356" stop="83300"/>
              <exon start="82160" stop="81922"/>
              <exon start="81468" stop="81460"/>
              <exon start="80560" stop="80531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83322" stop="83300"/>
              <exon start="82160" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA : GAAAATGAA : CAAACATAAATAAATAAATACCAAAAAACA</gDNA_template>
            <first_frame> L  E  T  T  L  K  A  F  F  L  H  Y  Q  T  I  S  T  A  *  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  :  E  N  E  :  Q  T  *  I  N  K  Y  Q  K  T </first_frame>
            <second_frame>  *  K  Q  P  *  K  P  S  S  F  T  T  K  L  *  A  L  P  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  K :   K  M  N :   K  H  K  *  I  N  T  K  K   </second_frame>
            <third_frame>   R  N  N  P  K  S  L  L  P  S  L  P  N  Y  K  H  C  L  D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I   : R  K  *   : T  N  I  N  K  *  I  P  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="84025" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="81922"/>
            <exon e_start="81565" e_stop="81554"/>
            <exon e_start="81468" e_stop="81427"/>
            <exon e_start="81267" e_stop="81221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.543" acc_prob="0.745" e_score="0.667"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.595"/>
          <exon-only e_score="0.574"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="84025" e_stop="83900" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82160" e_stop="81922" e_length="239"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81921" i_stop="81566" i_length="356"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="81565" e_stop="81554" e_length="12"/>
          </exon>
          <intron i_serial="5" don_prob="0.543" acc_prob="0.745">
            <gDNA_intron_boundary i_start="81553" i_stop="81469" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="0.595">
            <gDNA_exon_boundary e_start="81468" e_stop="81427" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81426" i_stop="81268" i_length="159"/>
          </intron>
          <exon e_serial="7" e_score="0.574">
            <gDNA_exon_boundary e_start="81267" e_stop="81221" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84025" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83971" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83966" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83964" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83956" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83951" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83942" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83933" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83928" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83912" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
              <exon start="81565" stop="81554"/>
              <exon start="81468" stop="81427"/>
              <exon start="81267" stop="81221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83906" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83901" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83613" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83589" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83581" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83570" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83532" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609071" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83322" stop="83300"/>
              <exon start="82160" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA : ATTAAATACAAA : GAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAG : ATGTTAGAAATACACAATGTTGCTAGTTGCTAGATGGTGTTGAGGGC</gDNA_template>
            <first_frame> L  E  T  T  L  K  A  F  F  L  H  Y  Q  T  I  S  T  A  *  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  :  I  K  Y  K  :  E  N  E  V  I  A  M  C  F  F  L  E  L  *  :  M  L  E  I  H  N  V  A  S  C  *  M  V  L  R   </first_frame>
            <second_frame>  *  K  Q  P  *  K  P  S  S  F  T  T  K  L  *  A  L  P  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  K :   L  N  T  K :   K  M  K  L  *  R  C  V  F  F  W  S  C  R :   C  *  K  Y  T  M  L  L  V  A  R  W  C  *  G  </second_frame>
            <third_frame>   R  N  N  P  K  S  L  L  P  S  L  P  N  Y  K  H  C  L  D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I   : N  *  I  Q   : R  K  *  S  Y  S  D  V  F  F  F  G  V  V   : D  V  R  N  T  Q  C  C  *  L  L  D  G  V  E  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="84025" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="81922"/>
            <exon e_start="81616" e_stop="81598"/>
            <exon e_start="81468" e_stop="81399"/>
            <exon e_start="81234" e_stop="81211"/>
            <exon e_start="81022" e_stop="81000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.745" e_score="0.684"/>
          <exon-intron don_prob="0.561" acc_prob="0.798" e_score="0.500"/>
          <exon-intron don_prob="0.000" acc_prob="0.866" e_score="0.542"/>
          <exon-only e_score="0.652"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="84025" e_stop="83900" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82160" e_stop="81922" e_length="239"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81921" i_stop="81617" i_length="305"/>
          </intron>
          <exon e_serial="5" e_score="0.684">
            <gDNA_exon_boundary e_start="81616" e_stop="81598" e_length="19"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.745">
            <gDNA_intron_boundary i_start="81597" i_stop="81469" i_length="129"/>
          </intron>
          <exon e_serial="6" e_score="0.500">
            <gDNA_exon_boundary e_start="81468" e_stop="81399" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.561" acc_prob="0.798">
            <gDNA_intron_boundary i_start="81398" i_stop="81235" i_length="164"/>
          </intron>
          <exon e_serial="7" e_score="0.542">
            <gDNA_exon_boundary e_start="81234" e_stop="81211" e_length="24"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.866">
            <gDNA_intron_boundary i_start="81210" i_stop="81023" i_length="188"/>
          </intron>
          <exon e_serial="8" e_score="0.652">
            <gDNA_exon_boundary e_start="81022" e_stop="81000" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84025" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83971" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83966" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83964" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83956" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83951" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83942" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83933" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83928" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83912" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
              <exon start="81616" stop="81598"/>
              <exon start="81468" stop="81399"/>
              <exon start="81234" stop="81211"/>
              <exon start="81022" stop="81000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83906" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83901" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83613" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83589" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83581" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83570" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83532" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609071" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83322" stop="83300"/>
              <exon start="82160" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA : TGAAACAATGCAAAGAAAA : GAAAATGAAGTTATAGCGATGTGTTTTTTTTTGGAGTTGTAGGTTAACTGAACTAACTTTAGGCTACAAG : ATGGTGTTGAGGGCATCGAATTGG : GCCGCCTTGAGCGATGCAACGTA</gDNA_template>
            <first_frame> L  E  T  T  L  K  A  F  F  L  H  Y  Q  T  I  S  T  A  *  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  :  *  N  N  A  K  K   : R  K  *  S  Y  S  D  V  F  F  F  G  V  V  G  *  L  N  *  L  *  A  T  R :   W  C  *  G  H  R  I  G :   P  P  *  A  M  Q  R  </first_frame>
            <second_frame>  *  K  Q  P  *  K  P  S  S  F  T  T  K  L  *  A  L  P  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  N :   E  T  M  Q  R  K  :  E  N  E  V  I  A  M  C  F  F  L  E  L  *  V  N  *  T  N  F  R  L  Q   : D  G  V  E  G  I  E  L   : G  R  L  E  R  C  N  V </second_frame>
            <third_frame>   R  N  N  P  K  S  L  L  P  S  L  P  N  Y  K  H  C  L  D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I   : M  K  Q  C  K  E  K :   K  M  K  L  *  R  C  V  F  F  W  S  C  R  L  T  E  L  T  L  G  Y  K  :  M  V  L  R  A  S  N  W  :  A  A  L  S  D  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="84025" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="81922"/>
            <exon e_start="81468" e_stop="81454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.745" e_score="1.000"/>
          <exon-only e_score="0.533"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="84025" e_stop="83900" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82160" e_stop="81922" e_length="239"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.745">
            <gDNA_intron_boundary i_start="81921" i_stop="81469" i_length="453"/>
          </intron>
          <exon e_serial="5" e_score="0.533">
            <gDNA_exon_boundary e_start="81468" e_stop="81454" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84025" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83971" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83969" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
              <exon start="81468" stop="81454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83966" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83964" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83956" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83951" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83942" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83933" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83931" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83928" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83906" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83901" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83613" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83589" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83581" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83570" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83532" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609071" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83322" stop="83300"/>
              <exon start="82160" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA : GAAAATGAAGTTATA</gDNA_template>
            <first_frame> L  E  T  T  L  K  A  F  F  L  H  Y  Q  T  I  S  T  A  *  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  :  E  N  E  V  I </first_frame>
            <second_frame>  *  K  Q  P  *  K  P  S  S  F  T  T  K  L  *  A  L  P  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  K :   K  M  K  L   </second_frame>
            <third_frame>   R  N  N  P  K  S  L  L  P  S  L  P  N  Y  K  H  C  L  D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I   : R  K  *  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="84025" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="81923"/>
            <exon e_start="81468" e_stop="81450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.745" e_score="1.000"/>
          <exon-only e_score="0.526"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="84025" e_stop="83900" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82160" e_stop="81923" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.745">
            <gDNA_intron_boundary i_start="81922" i_stop="81469" i_length="454"/>
          </intron>
          <exon e_serial="5" e_score="0.526">
            <gDNA_exon_boundary e_start="81468" e_stop="81450" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84025" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83966" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83956" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83951" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83933" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83928" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83901" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83581" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83570" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83532" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609071" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83368" stop="83300"/>
              <exon start="82160" stop="81923"/>
              <exon start="81468" stop="81450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234207" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83322" stop="83300"/>
              <exon start="82160" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="10" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATA : GAAAATGAAGTTATAGCGA</gDNA_template>
            <first_frame> L  E  T  T  L  K  A  F  F  L  H  Y  Q  T  I  S  T  A  *  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  * :   K  M  K  L  *  R </first_frame>
            <second_frame>  *  K  Q  P  *  K  P  S  S  F  T  T  K  L  *  A  L  P  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H   : R  K  *  S  Y  S   </second_frame>
            <third_frame>   R  N  N  P  K  S  L  L  P  S  L  P  N  Y  K  H  C  L  D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  :  E  N  E  V  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="10" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="11">
          <exon_coordinates>
            <exon e_start="84025" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="81923"/>
            <exon e_start="80704" e_stop="80660"/>
            <exon e_start="80560" e_stop="80531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.508" acc_prob="0.000" e_score="0.600"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="84025" e_stop="83900" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82160" e_stop="81923" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81922" i_stop="80705" i_length="1218"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="80704" e_stop="80660" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.508" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80659" i_stop="80561" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.700">
            <gDNA_exon_boundary e_start="80560" e_stop="80531" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84025" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83966" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83956" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83951" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81923"/>
              <exon start="80704" stop="80660"/>
              <exon start="80560" stop="80531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83951" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83933" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83928" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83901" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83581" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83570" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83532" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609071" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83322" stop="83300"/>
              <exon start="82160" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="11" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATA : AAAATAAAGAAATAACCTCTAAGGAAATTAAGAAAAATAAATTTT : CAAACATAAATAAATAAATACCAAAAAACA</gDNA_template>
            <first_frame> L  E  T  T  L  K  A  F  F  L  H  Y  Q  T  I  S  T  A  *  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  * :   K  *  R  N  N  L  *  G  N  *  E  K  *  I  F :   K  H  K  *  I  N  T  K  K   </first_frame>
            <second_frame>  *  K  Q  P  *  K  P  S  S  F  T  T  K  L  *  A  L  P  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H   : K  N  K  E  I  T  S  K  E  I  K  K  N  K  F   : S  N  I  N  K  *  I  P  K  N  </second_frame>
            <third_frame>   R  N  N  P  K  S  L  L  P  S  L  P  N  Y  K  H  C  L  D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  :  K  I  K  K  *  P  L  R  K  L  R  K  I  N  F  :  Q  T  *  I  N  K  Y  Q  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="11" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="12">
          <exon_coordinates>
            <exon e_start="84025" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="81926"/>
            <exon e_start="80256" e_stop="80243"/>
            <exon e_start="79914" e_stop="79862"/>
            <exon e_start="79733" e_stop="79706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.643"/>
          <exon-intron don_prob="0.000" acc_prob="0.209" e_score="0.604"/>
          <exon-only e_score="0.607"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="84025" e_stop="83900" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82160" e_stop="81926" e_length="235"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81925" i_stop="80257" i_length="1669"/>
          </intron>
          <exon e_serial="5" e_score="0.643">
            <gDNA_exon_boundary e_start="80256" e_stop="80243" e_length="14"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80242" i_stop="79915" i_length="328"/>
          </intron>
          <exon e_serial="6" e_score="0.604">
            <gDNA_exon_boundary e_start="79914" e_stop="79862" e_length="53"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.209">
            <gDNA_intron_boundary i_start="79861" i_stop="79734" i_length="128"/>
          </intron>
          <exon e_serial="7" e_score="0.607">
            <gDNA_exon_boundary e_start="79733" e_stop="79706" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84025" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83966" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83963" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
              <exon start="80256" stop="80243"/>
              <exon start="79914" stop="79862"/>
              <exon start="79733" stop="79706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83956" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83951" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83933" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83928" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83901" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83581" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83570" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83532" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609071" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83322" stop="83300"/>
              <exon start="82160" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="12" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCC : TTCAAAACAAACAT : AAAAATCACAAAAAAAAATACATTTTGTGTGTGTGGGGATGGTTCTTGATTTT : ATTTTCACTAAGGGTATTCAAAATACAA</gDNA_template>
            <first_frame> L  E  T  T  L  K  A  F  F  L  H  Y  Q  T  I  S  T  A  *  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P :   S  K  Q  T   : *  K  S  Q  K  K  I  H  F  V  C  V  G  M  V  L  D  F  :  I  F  T  K  G  I  Q  N  T  </first_frame>
            <second_frame>  *  K  Q  P  *  K  P  S  S  F  T  T  K  L  *  A  L  P  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F   : L  Q  N  K  H  :  K  N  H  K  K  K  Y  I  L  C  V  W  G  W  F  L  I  L :   F  S  L  R  V  F  K  I  Q </second_frame>
            <third_frame>   R  N  N  P  K  S  L  L  P  S  L  P  N  Y  K  H  C  L  D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  :  F  K  T  N  I :   K  I  T  K  K  N  T  F  C  V  C  G  D  G  S  *  F   : Y  F  H  *  G  Y  S  K  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="12" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="13">
          <exon_coordinates>
            <exon e_start="84025" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="81923"/>
            <exon e_start="80681" e_stop="80660"/>
            <exon e_start="80560" e_stop="80464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.508" acc_prob="0.000" e_score="0.591"/>
          <exon-only e_score="0.495"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="84025" e_stop="83900" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82160" e_stop="81923" e_length="238"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81922" i_stop="80682" i_length="1241"/>
          </intron>
          <exon e_serial="5" e_score="0.591">
            <gDNA_exon_boundary e_start="80681" e_stop="80660" e_length="22"/>
          </exon>
          <intron i_serial="5" don_prob="0.508" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80659" i_stop="80561" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.495">
            <gDNA_exon_boundary e_start="80560" e_stop="80464" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84025" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83984" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81923"/>
              <exon start="80681" stop="80660"/>
              <exon start="80560" stop="80464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83966" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83962" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83956" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83951" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83937" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83933" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83928" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83923" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83901" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83581" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83570" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83532" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609071" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83322" stop="83300"/>
              <exon start="82160" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="13" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATA : GAAATTAAGAAAAATAAATTTT : CAAACATAAATAAATAAATACCAAAAAACATTTATTTTTCGAAAAAACATTTTTACTAAAGTCTTCTCCTAGCGACTAAGGAACATTTTAGGAGGAA</gDNA_template>
            <first_frame> L  E  T  T  L  K  A  F  F  L  H  Y  Q  T  I  S  T  A  *  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  * :   K  L  R  K  I  N  F  :  Q  T  *  I  N  K  Y  Q  K  T  F  I  F  R  K  N  I  F  T  K  V  F  S  *  R  L  R  N  I  L  G  G  </first_frame>
            <second_frame>  *  K  Q  P  *  K  P  S  S  F  T  T  K  L  *  A  L  P  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H   : R  N  *  E  K  *  I  F :   K  H  K  *  I  N  T  K  K  H  L  F  F  E  K  T  F  L  L  K  S  S  P  S  D  *  G  T  F  *  E  E </second_frame>
            <third_frame>   R  N  N  P  K  S  L  L  P  S  L  P  N  Y  K  H  C  L  D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I  :  E  I  K  K  N  K  F   : S  N  I  N  K  *  I  P  K  N  I  Y  F  S  K  K  H  F  Y  *  S  L  L  L  A  T  K  E  H  F  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="13" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="14">
          <exon_coordinates>
            <exon e_start="83652" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="81922"/>
            <exon e_start="79914" e_stop="79895"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83652" e_stop="83516" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82160" e_stop="81922" e_length="239"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81921" i_stop="79915" i_length="2007"/>
          </intron>
          <exon e_serial="4" e_score="0.800">
            <gDNA_exon_boundary e_start="79914" e_stop="79895" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83652" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
              <exon start="79914" stop="79895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83652" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
              <exon start="79914" stop="79895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83613" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83589" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83581" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83570" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586963" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83532" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="81930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609071" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83322" stop="83300"/>
              <exon start="82160" stop="81933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="14" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTATTGCCCTTTGAAAGATTAATGTGCTTAAAATTTTAAAAGTATGTGTTCCAACTTGGCATTTTTATAAAGAACGGATCTTGAGACTTCCATAA : AAAAATCACAAAAAAAAATA</gDNA_template>
            <first_frame> G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F  Y  C  P  L  K  D  *  C  A  *  N  F  K  S  M  C  S  N  L  A  F  L  *  R  T  D  L  E  T  S  I   : K  K  S  Q  K  K  I </first_frame>
            <second_frame>  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  I  A  L  *  K  I  N  V  L  K  I  L  K  V  C  V  P  T  W  H  F  Y  K  E  R  I  L  R  L  P  *  :  K  N  H  K  K  K   </second_frame>
            <third_frame>   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L  L  P  F  E  R  L  M  C  L  K  F  *  K  Y  V  F  Q  L  G  I  F  I  K  N  G  S  *  D  F  H  K :   K  I  T  K  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="14" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="15">
          <exon_coordinates>
            <exon e_start="84025" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="82941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="84025" e_stop="83900" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="83401" e_stop="82941" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84025" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83959" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83912" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83901" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83637" stop="83516"/>
              <exon start="83401" stop="82941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83637" stop="83516"/>
              <exon start="83401" stop="82941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="15" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGAAACAACCCTAAAAGCCTTCTTCCTTCACTACCAAACTATAAGCACTGCCTAGATCGCCGCAGTTCTCAGTTGAGAAAGCTCAGGAGGAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTT</gDNA_template>
            <first_frame> L  E  T  T  L  K  A  F  F  L  H  Y  Q  T  I  S  T  A  *  I  A  A  V  L  S  *  E  S  S  G  G  G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E  G  T  H  I  I  V  F  L  H  F  K  I  C  *  F  T  F  Y  L  G  L  S  V  P  L  V  W  I  T  L  F  I  E  F  M  K  S  F  S  S  D  C  L  L  L  K  W  E  T  L  F  P  L  V  I  D  K  S  H  F  T  L  Q  I  S  H  I  L  A  *  T  N  I  *  I  L  F  S  T  F  I  A  N  M  T  T  T  S  F  S  S  V  K  L  F  N  W  A  Q  C  L  R  S  L  K  N  N  V  F  L  K  I  E  S  C  R  F  L  S  F </first_frame>
            <second_frame>  *  K  Q  P  *  K  P  S  S  F  T  T  K  L  *  A  L  P  R  S  P  Q  F  S  V  E  K  A  Q  E  E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  V  H  I  L  *  C  F  C  I  L  R  F  A  N  L  L  F  I  *  D  *  V  C  L  W  Y  G  *  H  C  L  *  N  L  *  N  H  F  R  V  I  A  Y  F  *  N  G  K  P  Y  F  L  *  L  *  T  K  V  I  L  L  Y  R  Y  P  I  Y  L  P  R  Q  I  F  R  Y  C  F  Q  P  S  L  L  I  *  L  L  P  L  S  H  L  L  S  C  S  T  G  H  N  V  *  E  V  *  K  I  M  C  F  *  R  *  K  V  V  D  S  F  P   </second_frame>
            <third_frame>   R  N  N  P  K  S  L  L  P  S  L  P  N  Y  K  H  C  L  D  R  R  S  S  Q  L  R  K  L  R  R  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R  Y  T  Y  Y  S  V  S  A  F  *  D  L  L  I  Y  F  L  F  R  I  E  C  A  F  G  M  D  N  I  V  Y  R  I  Y  E  I  I  F  E  *  L  L  T  S  K  M  G  N  L  I  S  S  S  Y  R  Q  K  S  F  Y  F  T  D  I  P  Y  T  C  L  D  K  Y  L  D  I  V  F  N  L  H  C  *  Y  D  Y  Y  L  F  L  I  C  *  V  V  Q  L  G  T  M  F  K  K  F  K  K  *  C  V  F  K  D  R  K  L  S  I  P  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="15" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83259"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTHIIVFLHFKIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="80661" PGL_stop="82162"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80661" e_stop="80676"/>
            <exon e_start="81922" e_stop="82162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.625">
            <gDNA_exon_boundary e_start="80661" e_stop="80676" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80677" i_stop="81921" i_length="1245"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="81922" e_stop="82162" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80661" stop="80676"/>
              <exon start="81922" stop="82162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTTATTTTTCTTA : TTATGGAAGTCTCAAGATCCGTTCTTTATAAAAATGCCAAGTTGGAACACATACTTTTAAAATTTTAAGCACATTAATCTTTCAAAGGGCAATAAAAACTAAGATAGAAGGTCCCAAAATTTTACTTGCTCTAACACTTGAAATATCAAAATGAAGCTACCACTAATAGCCTCTCAAGTAACTGTCTCGAAGGCCTCAAGCAGAAGCTACTCCCTTCTTCCTTGGAGCTGCTTCAGTACCT</gDNA_template>
            <first_frame> K  F  I  F  L   : I  M  E  V  S  R  S  V  L  Y  K  N  A  K  L  E  H  I  L  L  K  F  *  A  H  *  S  F  K  G  Q  *  K  L  R  *  K  V  P  K  F  Y  L  L  *  H  L  K  Y  Q  N  E  A  T  T  N  S  L  S  S  N  C  L  E  G  L  K  Q  K  L  L  P  S  S  L  E  L  L  Q  Y   </first_frame>
            <second_frame>  N  L  F  F  L  :  L  W  K  S  Q  D  P  F  F  I  K  M  P  S  W  N  T  Y  F  *  N  F  K  H  I  N  L  S  K  G  N  K  N  *  D  R  R  S  Q  N  F  T  C  S  N  T  *  N  I  K  M  K  L  P  L  I  A  S  Q  V  T  V  S  K  A  S  S  R  S  Y  S  L  L  P  W  S  C  F  S  T  </second_frame>
            <third_frame>   I  Y  F  S  Y :   Y  G  S  L  K  I  R  S  L  *  K  C  Q  V  G  T  H  T  F  K  I  L  S  T  L  I  F  Q  R  A  I  K  T  K  I  E  G  P  K  I  L  L  A  L  T  L  E  I  S  K  *  S  Y  H  *  *  P  L  K  *  L  S  R  R  P  Q  A  E  A  T  P  F  F  L  G  A  A  S  V  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0081D06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="87825" PGL_stop="88956"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87825" e_stop="88038"/>
            <exon e_start="88129" e_stop="88350"/>
            <exon e_start="88581" e_stop="88956"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.618" e_score="0.934"/>
          <exon-intron don_prob="0.731" acc_prob="0.880" e_score="0.977"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="87825" e_stop="88038" e_length="214"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.618">
            <gDNA_intron_boundary i_start="88039" i_stop="88128" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="88129" e_stop="88350" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.731" acc_prob="0.880">
            <gDNA_intron_boundary i_start="88351" i_stop="88580" i_length="230"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="88581" e_stop="88956" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87825" stop="88038"/>
              <exon start="88129" stop="88350"/>
              <exon start="88581" stop="88956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87827" stop="88038"/>
              <exon start="88129" stop="88350"/>
              <exon start="88581" stop="88591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTAGAAGTTTCAGGATTGAAAAATGACGATCAAAGCAGTCATGATGAAAGTGCATTATCTGGTTTCCAAGCATTAGTTAACATGTTACTGTCACTAACAAATAAAGATGGTGATGGAAGAATAATAATATCAAGGCCAAGGCCAAAATGCTCAATGCAACAAGGAGGGTATTTGAAATATGTCATGCTCACAGGAGAAAAGATATTTTCTGAG : ATCTTGAATCAAGCTCATGCTGTCATATTTGCTGGCGGGACTTTGCAACCTATAGAGGAAACAAAAGAACGCCTGTTTCCTTGGTTACCACCGGATCAGTTGCATTTCTTTTCCTGTGGTCATATCATCCCATCTGCAAACATTCTACCAGTTGTTGTTCCTCAGGGGCCTTCTGGCCACTCCTTTGATTTTAGTTACAGCGCCAGAAGCTCATCAGTCATG : ATAAAAGAACTAGGGCTTTTGGTCTCCAATTTGGTAAATGTAGTTCCTGAAGGCATGGTTCTTTTCTTCTCATCATTTGACTACGAAGGCCAGGTCTATGATGCATGGAAGGAGTCGGGCATCATTGGAAGAATTATGAAAAAGAAGCGTATATTTAGAGAACCTAGAAGAAGTACAGATGTGGAAACTGTTTTGAAGGAATACAAGGAAACAATTGATGCACTGTCCCATAGAAGTTCTAAGCGGGATCCTGAATCAAGAAATGGTGCAATTCTCCTTGCTATTGTGGGTGGGAAAGTATCAGAAGGTATCAACTTCAGCGATGGGATGGGTCGATGTATAGTCATGGTTGGATTGCCCTATCCTAGTCCTGCTG</gDNA_template>
            <first_frame> R  R  S  F  R  I  E  K  *  R  S  K  Q  S  *  *  K  C  I  I  W  F  P  S  I  S  *  H  V  T  V  T  N  K  *  R  W  *  W  K  N  N  N  I  K  A  K  A  K  M  L  N  A  T  R  R  V  F  E  I  C  H  A  H  R  R  K  D  I  F  *   : D  L  E  S  S  S  C  C  H  I  C  W  R  D  F  A  T  Y  R  G  N  K  R  T  P  V  S  L  V  T  T  G  S  V  A  F  L  F  L  W  S  Y  H  P  I  C  K  H  S  T  S  C  C  S  S  G  A  F  W  P  L  L  *  F  *  L  Q  R  Q  K  L  I  S  H   : D  K  R  T  R  A  F  G  L  Q  F  G  K  C  S  S  *  R  H  G  S  F  L  L  I  I  *  L  R  R  P  G  L  *  C  M  E  G  V  G  H  H  W  K  N  Y  E  K  E  A  Y  I  *  R  T  *  K  K  Y  R  C  G  N  C  F  E  G  I  Q  G  N  N  *  C  T  V  P  *  K  F  *  A  G  S  *  I  K  K  W  C  N  S  P  C  Y  C  G  W  E  S  I  R  R  Y  Q  L  Q  R  W  D  G  S  M  Y  S  H  G  W  I  A  L  S  *  S  C   </first_frame>
            <second_frame>  V  E  V  S  G  L  K  N  D  D  Q  S  S  H  D  E  S  A  L  S  G  F  Q  A  L  V  N  M  L  L  S  L  T  N  K  D  G  D  G  R  I  I  I  S  R  P  R  P  K  C  S  M  Q  Q  G  G  Y  L  K  Y  V  M  L  T  G  E  K  I  F  S  E  :  I  L  N  Q  A  H  A  V  I  F  A  G  G  T  L  Q  P  I  E  E  T  K  E  R  L  F  P  W  L  P  P  D  Q  L  H  F  F  S  C  G  H  I  I  P  S  A  N  I  L  P  V  V  V  P  Q  G  P  S  G  H  S  F  D  F  S  Y  S  A  R  S  S  S  V  M  :  I  K  E  L  G  L  L  V  S  N  L  V  N  V  V  P  E  G  M  V  L  F  F  S  S  F  D  Y  E  G  Q  V  Y  D  A  W  K  E  S  G  I  I  G  R  I  M  K  K  K  R  I  F  R  E  P  R  R  S  T  D  V  E  T  V  L  K  E  Y  K  E  T  I  D  A  L  S  H  R  S  S  K  R  D  P  E  S  R  N  G  A  I  L  L  A  I  V  G  G  K  V  S  E  G  I  N  F  S  D  G  M  G  R  C  I  V  M  V  G  L  P  Y  P  S  P  A  </second_frame>
            <third_frame>   *  K  F  Q  D  *  K  M  T  I  K  A  V  M  M  K  V  H  Y  L  V  S  K  H  *  L  T  C  Y  C  H  *  Q  I  K  M  V  M  E  E  *  *  Y  Q  G  Q  G  Q  N  A  Q  C  N  K  E  G  I  *  N  M  S  C  S  Q  E  K  R  Y  F  L  R :   S  *  I  K  L  M  L  S  Y  L  L  A  G  L  C  N  L  *  R  K  Q  K  N  A  C  F  L  G  Y  H  R  I  S  C  I  S  F  P  V  V  I  S  S  H  L  Q  T  F  Y  Q  L  L  F  L  R  G  L  L  A  T  P  L  I  L  V  T  A  P  E  A  H  Q  S  * :   *  K  N  *  G  F  W  S  P  I  W  *  M  *  F  L  K  A  W  F  F  S  S  H  H  L  T  T  K  A  R  S  M  M  H  G  R  S  R  A  S  L  E  E  L  *  K  R  S  V  Y  L  E  N  L  E  E  V  Q  M  W  K  L  F  *  R  N  T  R  K  Q  L  M  H  C  P  I  E  V  L  S  G  I  L  N  Q  E  M  V  Q  F  S  L  L  L  W  V  G  K  Y  Q  K  V  S  T  S  A  M  G  W  V  D  V  *  S  W  L  D  C  P  I  L  V  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87826" stop="88038"/>
                    <exon start="88129" stop="88350"/>
                    <exon start="88581" stop="88955"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEVSGLKNDDQSSHDESALSGFQALVNMLLSLTNKDGDGRIIISRPRPKCSMQQGGYLKYVMLTGEKIFSEILNQAHAVIFAGGTLQPIEETKERLFPWLPPDQLHFFSCGHIIPSANILPVVVPQGPSGHSFDFSYSARSSSVMIKELGLLVSNLVNVVPEGMVLFFSSFDYEGQVYDAWKESGIIGRIMKKKRIFREPRRSTDVETVLKEYKETIDALSHRSSKRDPESRNGAILLAIVGGKVSEGINFSDGMGRCIVMVGLPYPSPA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="91281" PGL_stop="91887"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91281" e_stop="91887"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91281" e_stop="91887" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91281" stop="91887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342775" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAATCAGTAAACAACACGAGGAAAGTACAGAAAGAAAAAATGGAAGATGCATTGCTTCGAAACACAAGTAAAGGTGAGGTATTAGTACAGAAGATGAAGGAACTAGAGATGATGGATGAGGAAGATTTGGATCAAATGATGGACATAAAAGAAGTTCTCTACTACTACTCTTACCTAAAATGTCCAGTTTACCTTGACATTGTTGACAGGTATTTCATGGACATGTATAATGAGTTATCACTTCCACAGACATTCATCAATGTCAACAGTTAAATGTTAAGTCTTGGTCACATTAAGCTCTAGAAACTACAGAGAAAATGTTTTTGCTTACTAATGAAAGTTTTCGAGCTTAGCTAACTTCTTTTGTCTGTTAATTGCCATGCCATGTACTTCTATATTGAAAAATTTCAGAAAACCTCATTAGATCTGAGTTAATTTCTCAGACGATCATTCAACTAGTAGTTATTACCTCAGAAAATTGGAATCAAGAAGTAAAGTGACTTTCAGAGTTGACATTTATTAATTGAATGACCATATGAGGAATCAACCCTATTCGATTTGTATTTCTTGAGCATGTTTCTTTACAATGTCAAATAAGTTATTTG</gDNA_template>
            <first_frame> K  N  Q  *  T  T  R  G  K  Y  R  K  K  K  W  K  M  H  C  F  E  T  Q  V  K  V  R  Y  *  Y  R  R  *  R  N  *  R  *  W  M  R  K  I  W  I  K  *  W  T  *  K  K  F  S  T  T  T  L  T  *  N  V  Q  F  T  L  T  L  L  T  G  I  S  W  T  C  I  M  S  Y  H  F  H  R  H  S  S  M  S  T  V  K  C  *  V  L  V  T  L  S  S  R  N  Y  R  E  N  V  F  A  Y  *  *  K  F  S  S  L  A  N  F  F  C  L  L  I  A  M  P  C  T  S  I  L  K  N  F  R  K  P  H  *  I  *  V  N  F  S  D  D  H  S  T  S  S  Y  Y  L  R  K  L  E  S  R  S  K  V  T  F  R  V  D  I  Y  *  L  N  D  H  M  R  N  Q  P  Y  S  I  C  I  S  *  A  C  F  F  T  M  S  N  K  L  F  </first_frame>
            <second_frame>  R  I  S  K  Q  H  E  E  S  T  E  R  K  N  G  R  C  I  A  S  K  H  K  *  R  *  G  I  S  T  E  D  E  G  T  R  D  D  G  *  G  R  F  G  S  N  D  G  H  K  R  S  S  L  L  L  L  L  P  K  M  S  S  L  P  *  H  C  *  Q  V  F  H  G  H  V  *  *  V  I  T  S  T  D  I  H  Q  C  Q  Q  L  N  V  K  S  W  S  H  *  A  L  E  T  T  E  K  M  F  L  L  T  N  E  S  F  R  A  *  L  T  S  F  V  C  *  L  P  C  H  V  L  L  Y  *  K  I  S  E  N  L  I  R  S  E  L  I  S  Q  T  I  I  Q  L  V  V  I  T  S  E  N  W  N  Q  E  V  K  *  L  S  E  L  T  F  I  N  *  M  T  I  *  G  I  N  P  I  R  F  V  F  L  E  H  V  S  L  Q  C  Q  I  S  Y  L </second_frame>
            <third_frame>   E  S  V  N  N  T  R  K  V  Q  K  E  K  M  E  D  A  L  L  R  N  T  S  K  G  E  V  L  V  Q  K  M  K  E  L  E  M  M  D  E  E  D  L  D  Q  M  M  D  I  K  E  V  L  Y  Y  Y  S  Y  L  K  C  P  V  Y  L  D  I  V  D  R  Y  F  M  D  M  Y  N  E  L  S  L  P  Q  T  F  I  N  V  N  S  *  M  L  S  L  G  H  I  K  L  *  K  L  Q  R  K  C  F  C  L  L  M  K  V  F  E  L  S  *  L  L  L  S  V  N  C  H  A  M  Y  F  Y  I  E  K  F  Q  K  T  S  L  D  L  S  *  F  L  R  R  S  F  N  *  *  L  L  P  Q  K  I  G  I  K  K  *  S  D  F  Q  S  *  H  L  L  I  E  *  P  Y  E  E  S  T  L  F  D  L  Y  F  L  S  M  F  L  Y  N  V  K  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91283" stop="91555"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESVNNTRKVQKEKMEDALLRNTSKGEVLVQKMKELEMMDEEDLDQMMDIKEVLYYYSYLKCPVYLDIVDRYFMDMYNELSLPQTFINVNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="92159" PGL_stop="92479"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92159" e_stop="92479"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="92159" e_stop="92479" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92159" stop="92479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGAGTATACTACATAAATGAAAGTTACATTACACTATTTTAATCTTGGATGTTAAACCATGTCCACAGGAAGTGCAGTTGATACGAAAAGACTGATATTACATTTCAGCTTGAGGTATAAACCATACAATTGGTATAATGAATAATATAAAATGAGACAACACAGCTCAATGACTACTTACTCCTATATTAGAATGCATTTTCAGTTTGAATATTCGCGTGAACTTCTTTGTTGTTGTTGATGAAAAGGCACCTTAAGGCAGTTTCATAGGCAGTGAATATAGCCCCATTCACTACAAATGCTCTGGCAACTGCAGTTC</gDNA_template>
            <first_frame> L  E  Y  T  T  *  M  K  V  T  L  H  Y  F  N  L  G  C  *  T  M  S  T  G  S  A  V  D  T  K  R  L  I  L  H  F  S  L  R  Y  K  P  Y  N  W  Y  N  E  *  Y  K  M  R  Q  H  S  S  M  T  T  Y  S  Y  I  R  M  H  F  Q  F  E  Y  S  R  E  L  L  C  C  C  *  *  K  G  T  L  R  Q  F  H  R  Q  *  I  *  P  H  S  L  Q  M  L  W  Q  L  Q  F </first_frame>
            <second_frame>  W  S  I  L  H  K  *  K  L  H  Y  T  I  L  I  L  D  V  K  P  C  P  Q  E  V  Q  L  I  R  K  D  *  Y  Y  I  S  A  *  G  I  N  H  T  I  G  I  M  N  N  I  K  *  D  N  T  A  Q  *  L  L  T  P  I  L  E  C  I  F  S  L  N  I  R  V  N  F  F  V  V  V  D  E  K  A  P  *  G  S  F  I  G  S  E  Y  S  P  I  H  Y  K  C  S  G  N  C  S   </second_frame>
            <third_frame>   G  V  Y  Y  I  N  E  S  Y  I  T  L  F  *  S  W  M  L  N  H  V  H  R  K  C  S  *  Y  E  K  T  D  I  T  F  Q  L  E  V  *  T  I  Q  L  V  *  *  I  I  *  N  E  T  T  Q  L  N  D  Y  L  L  L  Y  *  N  A  F  S  V  *  I  F  A  *  T  S  L  L  L  L  M  K  R  H  L  K  A  V  S  *  A  V  N  I  A  P  F  T  T  N  A  L  A  T  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0081D06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="95308" PGL_stop="92419"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95308" e_stop="95180"/>
            <exon e_start="93062" e_stop="92419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.970"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="95308" e_stop="95180" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="95179" i_stop="93063" i_length="2117"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="93062" e_stop="92419" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95308" stop="95180"/>
              <exon start="93062" stop="92547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95278" stop="95180"/>
              <exon start="93062" stop="92713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95246" stop="95180"/>
              <exon start="93062" stop="92419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAGAGTCCGTCAACAGAGTTGTACGCCTGGTTCTGCTTTCAACATCCTCCGCCGTGTTGCCGCCACTGAAGGACCTCTGGCTCTATACAGAGGCATGGCTGCTCCTCTCGCTTCCGTCACATTTCAG : AACGCCATGGTATTTCAGATTTATGCAGTGCTATCTCGAGCATTGGACAGGAATGTTCCAGCCAGTGATCCACCCTCCTACAAAGGAGTGGCCTTAGGTGGATTTGGAACAGGAGCATTACAAAGCCTAATGCTCACTCCTGTCGAACTTGTGAAAATTCGACTTCAGTTGCAACAGAGAAACATCCTGGATAACAAAAATCAAATGACTAGTTGTAAGGGTCCAACTGATGTGGCAAGAAACATATTCAGACAAGAAGGATGGAGGGGAATTTATCGCGGATTAACAATTACAGTCCTCAGAGATGCACCAGCTCACGGCCTATATTTCTGGACATACGAGTATGTAAGAGAGCAACTTCATCCAGGATGTCGTAAGAATGGTCAAGAGAGCTTTAGAACAATGCTTATAGCAGGTGGTCTTGCAGGAGTAGCTAGCTGGATATGCTGCTATCCCTTAGATGTTATTAAAACCCGATTCCAGGCTCAGTCACAATCTACACCATTGAGATATACTGGCATTGTTGATTGTTTCAGGAGAAGTGTGAAACAAGAGGGATATAATGTGCTCTGGAGAGGTTTGGGAACTGCAGTTGCCAGAGCATTTGTAGTGAATGGGGCTATATTCACTGCCTATGAAACTGC</gDNA_template>
            <first_frame> I  R  V  R  Q  Q  S  C  T  P  G  S  A  F  N  I  L  R  R  V  A  A  T  E  G  P  L  A  L  Y  R  G  M  A  A  P  L  A  S  V  T  F  Q  :  N  A  M  V  F  Q  I  Y  A  V  L  S  R  A  L  D  R  N  V  P  A  S  D  P  P  S  Y  K  G  V  A  L  G  G  F  G  T  G  A  L  Q  S  L  M  L  T  P  V  E  L  V  K  I  R  L  Q  L  Q  Q  R  N  I  L  D  N  K  N  Q  M  T  S  C  K  G  P  T  D  V  A  R  N  I  F  R  Q  E  G  W  R  G  I  Y  R  G  L  T  I  T  V  L  R  D  A  P  A  H  G  L  Y  F  W  T  Y  E  Y  V  R  E  Q  L  H  P  G  C  R  K  N  G  Q  E  S  F  R  T  M  L  I  A  G  G  L  A  G  V  A  S  W  I  C  C  Y  P  L  D  V  I  K  T  R  F  Q  A  Q  S  Q  S  T  P  L  R  Y  T  G  I  V  D  C  F  R  R  S  V  K  Q  E  G  Y  N  V  L  W  R  G  L  G  T  A  V  A  R  A  F  V  V  N  G  A  I  F  T  A  Y  E  T   </first_frame>
            <second_frame>  L  E  S  V  N  R  V  V  R  L  V  L  L  S  T  S  S  A  V  L  P  P  L  K  D  L  W  L  Y  T  E  A  W  L  L  L  S  L  P  S  H  F  R :   T  P  W  Y  F  R  F  M  Q  C  Y  L  E  H  W  T  G  M  F  Q  P  V  I  H  P  P  T  K  E  W  P  *  V  D  L  E  Q  E  H  Y  K  A  *  C  S  L  L  S  N  L  *  K  F  D  F  S  C  N  R  E  T  S  W  I  T  K  I  K  *  L  V  V  R  V  Q  L  M  W  Q  E  T  Y  S  D  K  K  D  G  G  E  F  I  A  D  *  Q  L  Q  S  S  E  M  H  Q  L  T  A  Y  I  S  G  H  T  S  M  *  E  S  N  F  I  Q  D  V  V  R  M  V  K  R  A  L  E  Q  C  L  *  Q  V  V  L  Q  E  *  L  A  G  Y  A  A  I  P  *  M  L  L  K  P  D  S  R  L  S  H  N  L  H  H  *  D  I  L  A  L  L  I  V  S  G  E  V  *  N  K  R  D  I  M  C  S  G  E  V  W  E  L  Q  L  P  E  H  L  *  *  M  G  L  Y  S  L  P  M  K  L  </second_frame>
            <third_frame>   *  S  P  S  T  E  L  Y  A  W  F  C  F  Q  H  P  P  P  C  C  R  H  *  R  T  S  G  S  I  Q  R  H  G  C  S  S  R  F  R  H  I  S   : E  R  H  G  I  S  D  L  C  S  A  I  S  S  I  G  Q  E  C  S  S  Q  *  S  T  L  L  Q  R  S  G  L  R  W  I  W  N  R  S  I  T  K  P  N  A  H  S  C  R  T  C  E  N  S  T  S  V  A  T  E  K  H  P  G  *  Q  K  S  N  D  *  L  *  G  S  N  *  C  G  K  K  H  I  Q  T  R  R  M  E  G  N  L  S  R  I  N  N  Y  S  P  Q  R  C  T  S  S  R  P  I  F  L  D  I  R  V  C  K  R  A  T  S  S  R  M  S  *  E  W  S  R  E  L  *  N  N  A  Y  S  R  W  S  C  R  S  S  *  L  D  M  L  L  S  L  R  C  Y  *  N  P  I  P  G  S  V  T  I  Y  T  I  E  I  Y  W  H  C  *  L  F  Q  E  K  C  E  T  R  G  I  *  C  A  L  E  R  F  G  N  C  S  C  Q  S  I  C  S  E  W  G  Y  I  H  C  L  *  N  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95308" stop="95180"/>
                    <exon start="93062" stop="92421"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRVRQQSCTPGSAFNILRRVAATEGPLALYRGMAAPLASVTFQNAMVFQIYAVLSRALDRNVPASDPPSYKGVALGGFGTGALQSLMLTPVELVKIRLQLQQRNILDNKNQMTSCKGPTDVARNIFRQEGWRGIYRGLTITVLRDAPAHGLYFWTYEYVREQLHPGCRKNGQESFRTMLIAGGLAGVASWICCYPLDVIKTRFQAQSQSTPLRYTGIVDCFRRSVKQEGYNVLWRGLGTAVARAFVVNGAIFTAYET</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="106358" PGL_stop="105777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106358" e_stop="105777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="106358" e_stop="105777" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106358" stop="105957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106351" stop="105777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAATGTGTTACCCGAGAGAACGTCCTGGACGATTCGTTCCTCCTGATGAAGGGCAGAGAAGGGAACAAGTGGAGATACAAGTTGTAAGCAGAGAAGTATCAAATGGAAATGGATCATCAGCTGAAGCTGGAACAATGAAACAATGTGTTTGTTCCCCTACACATCATCCAGGCTCATTCAGGTGTAGGCATCATCATGCTGATTACAAATGGGCTGCTCAACAGGGAACTATTAAGACTGCTGATCATTAGTTCCCTACGTGAACTCACATGTAAAAATTCATGACATTCATCTGTCCTGTATTTACTTTATTTTCTACGCTTCTTCATCTATATGTGTGTTTTCTTTACCCTGGTTATATTAAGACTTGTAATATCATTACGAAACTGAGTCACTTTCAAGAAATAGCCTATAAAATTTCAAATAGAGTTGATTTCTCGGATGGTCACTTGTTTTAGAAAGTCACTTTCTTTGTTGAAGAAAATTTGAATCAGAAGAAATGTGATTTTCTAAGATAATAACTATTAGTTGAGTGACCATCTGAGAAATCAACCCTCACACATGTGTTTCAAATTTTCAAT</gDNA_template>
            <first_frame> P  M  C  Y  P  R  E  R  P  G  R  F  V  P  P  D  E  G  Q  R  R  E  Q  V  E  I  Q  V  V  S  R  E  V  S  N  G  N  G  S  S  A  E  A  G  T  M  K  Q  C  V  C  S  P  T  H  H  P  G  S  F  R  C  R  H  H  H  A  D  Y  K  W  A  A  Q  Q  G  T  I  K  T  A  D  H  *  F  P  T  *  T  H  M  *  K  F  M  T  F  I  C  P  V  F  T  L  F  S  T  L  L  H  L  Y  V  C  F  L  Y  P  G  Y  I  K  T  C  N  I  I  T  K  L  S  H  F  Q  E  I  A  Y  K  I  S  N  R  V  D  F  S  D  G  H  L  F  *  K  V  T  F  F  V  E  E  N  L  N  Q  K  K  C  D  F  L  R  *  *  L  L  V  E  *  P  S  E  K  S  T  L  T  H  V  F  Q  I  F  N </first_frame>
            <second_frame>  Q  C  V  T  R  E  N  V  L  D  D  S  F  L  L  M  K  G  R  E  G  N  K  W  R  Y  K  L  *  A  E  K  Y  Q  M  E  M  D  H  Q  L  K  L  E  Q  *  N  N  V  F  V  P  L  H  I  I  Q  A  H  S  G  V  G  I  I  M  L  I  T  N  G  L  L  N  R  E  L  L  R  L  L  I  I  S  S  L  R  E  L  T  C  K  N  S  *  H  S  S  V  L  Y  L  L  Y  F  L  R  F  F  I  Y  M  C  V  F  F  T  L  V  I  L  R  L  V  I  S  L  R  N  *  V  T  F  K  K  *  P  I  K  F  Q  I  E  L  I  S  R  M  V  T  C  F  R  K  S  L  S  L  L  K  K  I  *  I  R  R  N  V  I  F  *  D  N  N  Y  *  L  S  D  H  L  R  N  Q  P  S  H  M  C  F  K  F  S   </second_frame>
            <third_frame>   N  V  L  P  E  R  T  S  W  T  I  R  S  S  *  *  R  A  E  K  G  T  S  G  D  T  S  C  K  Q  R  S  I  K  W  K  W  I  I  S  *  S  W  N  N  E  T  M  C  L  F  P  Y  T  S  S  R  L  I  Q  V  *  A  S  S  C  *  L  Q  M  G  C  S  T  G  N  Y  *  D  C  *  S  L  V  P  Y  V  N  S  H  V  K  I  H  D  I  H  L  S  C  I  Y  F  I  F  Y  A  S  S  S  I  C  V  F  S  L  P  W  L  Y  *  D  L  *  Y  H  Y  E  T  E  S  L  S  R  N  S  L  *  N  F  K  *  S  *  F  L  G  W  S  L  V  L  E  S  H  F  L  C  *  R  K  F  E  S  E  E  M  *  F  S  K  I  I  T  I  S  *  V  T  I  *  E  I  N  P  H  T  C  V  S  N  F  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106358" stop="106107"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMCYPRERPGRFVPPDEGQRREQVEIQVVSREVSNGNGSSAEAGTMKQCVCSPTHHPGSFRCRHHHADYKWAAQQGTIKTADH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="115641" PGL_stop="117847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115641" e_stop="115896"/>
            <exon e_start="116120" e_stop="116140"/>
            <exon e_start="116236" e_stop="116297"/>
            <exon e_start="116556" e_stop="116610"/>
            <exon e_start="117516" e_stop="117552"/>
            <exon e_start="117665" e_stop="117847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.591" e_score="0.945"/>
          <exon-intron don_prob="0.999" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.984"/>
          <exon-intron don_prob="0.937" acc_prob="0.996" e_score="0.945"/>
          <exon-intron don_prob="0.000" acc_prob="0.792" e_score="1.000"/>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="115641" e_stop="115896" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.591">
            <gDNA_intron_boundary i_start="115897" i_stop="116119" i_length="223"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116120" e_stop="116140" e_length="21"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.930">
            <gDNA_intron_boundary i_start="116141" i_stop="116235" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="116236" e_stop="116297" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="116298" i_stop="116555" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="0.945">
            <gDNA_exon_boundary e_start="116556" e_stop="116610" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.937" acc_prob="0.996">
            <gDNA_intron_boundary i_start="116611" i_stop="117515" i_length="905"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117516" e_stop="117552" e_length="37"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.792">
            <gDNA_intron_boundary i_start="117553" i_stop="117664" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="0.902">
            <gDNA_exon_boundary e_start="117665" e_stop="117847" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115641" stop="115896"/>
              <exon start="116120" stop="116140"/>
              <exon start="116236" stop="116297"/>
              <exon start="116556" stop="116610"/>
              <exon start="117516" stop="117552"/>
              <exon start="117665" stop="117847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATGATCTCCTCTACCGTTCCTCCCATTTTCTTTCTTCTTATTATTACAGAGGTTGCTCGCTGCCATTAGCAAAACCTCTACTCATTTTTCTCTCTTTTCCGATCTCTCTCCGGCACTTTGCCACTTAGCGAGCAATTCGAATTTTGGAAGATTTCTGCAGCTGAGTAGCTGGTGGATCTTTAGGATTATTCACACTCAAATCTCTGATTTATTGCATTTTTTCCGATTAGAATTCGCATTATTCACTGAAAATG : CCTCTAAGATTGGAGATTAAG : AGGAAACTTGCTCAAAGATCAGAAAGGGTAAAGGCCGTGGATCTCCATCCTACGGAGCCATG : GATATTGACAAGTTTATATTCAGGGACCCTTTGCATTTGGAACTACCAGACCCAG : ACAATGGCACAATCTTTCGAAGTTACTGAATTACCAG : TAAGATCAGCGAAATAATAGCACGCAAACAGTGGATTGGTGCGGGTTTCGGATAACATGTTTATTCGTGGATACAATTATAATACCATGGATAAGGTCAAAGTTTCGGAGGCGCACACAAGATTAATATTAAGGTGTGTGGCTGTTCATCCTACTCTACCATATGTGCTGTCATCATCTGATG</gDNA_template>
            <first_frame> V  *  S  P  L  P  F  L  P  F  S  F  F  L  L  L  Q  R  L  L  A  A  I  S  K  T  S  T  H  F  S  L  F  S  D  L  S  P  A  L  C  H  L  A  S  N  S  N  F  G  R  F  L  Q  L  S  S  W  W  I  F  R  I  I  H  T  Q  I  S  D  L  L  H  F  F  R  L  E  F  A  L  F  T  E  N   : A  S  K  I  G  D  *   : E  E  T  C  S  K  I  R  K  G  K  G  R  G  S  P  S  Y  G  A  M  :  D  I  D  K  F  I  F  R  D  P  L  H  L  E  L  P  D  P   : D  N  G  T  I  F  R  S  Y  *  I  T  S :   K  I  S  E  I  I  A  R  K  Q  W  I  G  A  G  F  G  *  H  V  Y  S  W  I  Q  L  *  Y  H  G  *  G  Q  S  F  G  G  A  H  K  I  N  I  K  V  C  G  C  S  S  Y  S  T  I  C  A  V  I  I  *   </first_frame>
            <second_frame>  Y  D  L  L  Y  R  S  S  H  F  L  S  S  Y  Y  Y  R  G  C  S  L  P  L  A  K  P  L  L  I  F  L  S  F  P  I  S  L  R  H  F  A  T  *  R  A  I  R  I  L  E  D  F  C  S  *  V  A  G  G  S  L  G  L  F  T  L  K  S  L  I  Y  C  I  F  S  D  *  N  S  H  Y  S  L  K  M  :  P  L  R  L  E  I  K  :  R  K  L  A  Q  R  S  E  R  V  K  A  V  D  L  H  P  T  E  P  W :   I  L  T  S  L  Y  S  G  T  L  C  I  W  N  Y  Q  T  Q  :  T  M  A  Q  S  F  E  V  T  E  L  P   : V  R  S  A  K  *  *  H  A  N  S  G  L  V  R  V  S  D  N  M  F  I  R  G  Y  N  Y  N  T  M  D  K  V  K  V  S  E  A  H  T  R  L  I  L  R  C  V  A  V  H  P  T  L  P  Y  V  L  S  S  S  D  </second_frame>
            <third_frame>   M  I  S  S  T  V  P  P  I  F  F  L  L  I  I  T  E  V  A  R  C  H  *  Q  N  L  Y  S  F  F  S  L  F  R  S  L  S  G  T  L  P  L  S  E  Q  F  E  F  W  K  I  S  A  A  E  *  L  V  D  L  *  D  Y  S  H  S  N  L  *  F  I  A  F  F  P  I  R  I  R  I  I  H  *  K  C :   L  *  D  W  R  L  R :   G  N  L  L  K  D  Q  K  G  *  R  P  W  I  S  I  L  R  S  H   : G  Y  *  Q  V  Y  I  Q  G  P  F  A  F  G  T  T  R  P  R :   Q  W  H  N  L  S  K  L  L  N  Y  Q  :  *  D  Q  R  N  N  S  T  Q  T  V  D  W  C  G  F  R  I  T  C  L  F  V  D  T  I  I  I  P  W  I  R  S  K  F  R  R  R  T  Q  D  *  Y  *  G  V  W  L  F  I  L  L  Y  H  M  C  C  H  H  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115647" stop="115896"/>
                    <exon start="116120" stop="116139"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPLPFLPFSFFLLLQRLLAAISKTSTHFSLFSDLSPALCHLASNSNFGRFLQLSSWWIFRIIHTQISDLLHFFRLEFALFTENASKIGD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115873" stop="115896"/>
                    <exon start="116120" stop="116140"/>
                    <exon start="116236" stop="116297"/>
                    <exon start="116556" stop="116610"/>
                    <exon start="117516" stop="117552"/>
                    <exon start="117665" stop="117681"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSHYSLKMPLRLEIKRKLAQRSERVKAVDLHPTEPWILTSLYSGTLCIWNYQTQTMAQSFEVTELPVRSAK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="117882" PGL_stop="125460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117882" e_stop="117993"/>
            <exon e_start="118091" e_stop="118222"/>
            <exon e_start="118304" e_stop="118452"/>
            <exon e_start="120023" e_stop="120091"/>
            <exon e_start="120370" e_stop="120520"/>
            <exon e_start="120641" e_stop="120706"/>
            <exon e_start="121215" e_stop="121403"/>
            <exon e_start="121744" e_stop="121884"/>
            <exon e_start="121982" e_stop="122056"/>
            <exon e_start="122147" e_stop="122323"/>
            <exon e_start="122417" e_stop="122508"/>
            <exon e_start="122602" e_stop="122718"/>
            <exon e_start="123309" e_stop="123423"/>
            <exon e_start="123544" e_stop="123615"/>
            <exon e_start="124113" e_stop="124309"/>
            <exon e_start="124403" e_stop="124496"/>
            <exon e_start="125057" e_stop="125163"/>
            <exon e_start="125416" e_stop="125460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.344" e_score="0.977"/>
          <exon-intron don_prob="1.000" acc_prob="0.947" e_score="0.987"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="0.974"/>
          <exon-intron don_prob="0.923" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.643" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.724" e_score="1.000"/>
          <exon-intron don_prob="0.860" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="117882" e_stop="117993" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="117994" i_stop="118090" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="118091" e_stop="118222" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.344">
            <gDNA_intron_boundary i_start="118223" i_stop="118303" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="118304" e_stop="118452" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.947">
            <gDNA_intron_boundary i_start="118453" i_stop="120022" i_length="1570"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120023" e_stop="120091" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="120092" i_stop="120369" i_length="278"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="120370" e_stop="120520" e_length="151"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120521" i_stop="120640" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="120641" e_stop="120706" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.923" acc_prob="0.980">
            <gDNA_intron_boundary i_start="120707" i_stop="121214" i_length="508"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="121215" e_stop="121403" e_length="189"/>
          </exon>
          <intron i_serial="7" don_prob="0.643" acc_prob="0.901">
            <gDNA_intron_boundary i_start="121404" i_stop="121743" i_length="340"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="121744" e_stop="121884" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.954" acc_prob="0.991">
            <gDNA_intron_boundary i_start="121885" i_stop="121981" i_length="97"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="121982" e_stop="122056" e_length="75"/>
          </exon>
          <intron i_serial="9" don_prob="0.927" acc_prob="0.998">
            <gDNA_intron_boundary i_start="122057" i_stop="122146" i_length="90"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="122147" e_stop="122323" e_length="177"/>
          </exon>
          <intron i_serial="10" don_prob="0.952" acc_prob="0.991">
            <gDNA_intron_boundary i_start="122324" i_stop="122416" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="122417" e_stop="122508" e_length="92"/>
          </exon>
          <intron i_serial="11" don_prob="0.955" acc_prob="0.992">
            <gDNA_intron_boundary i_start="122509" i_stop="122601" i_length="93"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="122602" e_stop="122718" e_length="117"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.724">
            <gDNA_intron_boundary i_start="122719" i_stop="123308" i_length="590"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="123309" e_stop="123423" e_length="115"/>
          </exon>
          <intron i_serial="13" don_prob="0.860" acc_prob="0.989">
            <gDNA_intron_boundary i_start="123424" i_stop="123543" i_length="120"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="123544" e_stop="123615" e_length="72"/>
          </exon>
          <intron i_serial="14" don_prob="0.890" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123616" i_stop="124112" i_length="497"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="124113" e_stop="124309" e_length="197"/>
          </exon>
          <intron i_serial="15" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="124310" i_stop="124402" i_length="93"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="124403" e_stop="124496" e_length="94"/>
          </exon>
          <intron i_serial="16" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="124497" i_stop="125056" i_length="560"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="125057" e_stop="125163" e_length="107"/>
          </exon>
          <intron i_serial="17" don_prob="0.898" acc_prob="1.000">
            <gDNA_intron_boundary i_start="125164" i_stop="125415" i_length="252"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="125416" e_stop="125460" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117882" stop="117993"/>
              <exon start="118091" stop="118222"/>
              <exon start="118304" stop="118452"/>
              <exon start="120023" stop="120091"/>
              <exon start="120370" stop="120520"/>
              <exon start="120641" stop="120706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120645" stop="120706"/>
              <exon start="121215" stop="121403"/>
              <exon start="121744" stop="121884"/>
              <exon start="121982" stop="122056"/>
              <exon start="122147" stop="122237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120646" stop="120706"/>
              <exon start="121215" stop="121403"/>
              <exon start="121744" stop="121884"/>
              <exon start="121982" stop="122056"/>
              <exon start="122147" stop="122285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121252" stop="121403"/>
              <exon start="121744" stop="121884"/>
              <exon start="121982" stop="122056"/>
              <exon start="122147" stop="122323"/>
              <exon start="122417" stop="122481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121328" stop="121403"/>
              <exon start="121744" stop="121884"/>
              <exon start="121982" stop="122056"/>
              <exon start="122147" stop="122323"/>
              <exon start="122417" stop="122508"/>
              <exon start="122602" stop="122718"/>
              <exon start="123309" stop="123423"/>
              <exon start="123544" stop="123612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122420" stop="122508"/>
              <exon start="122602" stop="122718"/>
              <exon start="123309" stop="123423"/>
              <exon start="123544" stop="123615"/>
              <exon start="124113" stop="124309"/>
              <exon start="124403" stop="124483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123405" stop="123423"/>
              <exon start="123544" stop="123615"/>
              <exon start="124113" stop="124309"/>
              <exon start="124403" stop="124496"/>
              <exon start="125057" stop="125163"/>
              <exon start="125416" stop="125460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGGTATGCACTCAAATTTTTGAGGGTCATTCCCATTATGTGATGCAAGTCACATTTAATCCAAAAGACACCAATACTTTTGCTAGTGCATCTCTTGATCGGACTATAAAG : ATTTGGAACCTTGGCTCTCCTGACCCTAACTTTACACTGGATGCCCATCTGAAAGGGGTTAATTGTGTAGATTATTTTACTGGTGGTGATAAACCTTATCTAATTACTGGTTCTGATGATCACACTGCTAAG : GTCTGGGACTATCAGACAAGAAGTTGTGTCCAGACTCTTGAAGGTCACACACACAATGTTTCTGCTGTATGTTTTCATCCAGATCTTCCTATTATAATGACTGGGTCTGAAGATGGTACTGTTCGTATATGGCATGCAACTACTTACAG : ACTCGAGAACACGTTGAATTATGGCCTTGAAAGAGTTTGGGCTATTGGTTACATGAAAGGTTCAAGAAG : GGTTGTAATTGGTTACGATGAGGGTACCATTATGGTAAAACTTGGTCGAGAGGTGCCTGTTGCTAGCATGGATAATAGTGGAAAAGTCATATGGGCTAAGCATAATGAGGTTCAAACTATTAACATCAAGAGTGTGGGTGTGGATTATGAG : GTTACTGATGGAGAAAGATTGCCTTTGGCGGTCAAGGAATTGGGAACTTGTGACCTATACCCACAA : AGCTTAAAGCATAACCCCAATGGAAGGTTTGTTGTTGTTTGTGGAGACGGTGAGTATATCATATATACTGCTCTGGCCTGGAGAAATAGGTCATTTGGCTCAGCTCTGGAATTTGTTTGGTCGTCTGATGGAGAGTATGCTATCCGAGAAAGTACTTCAAGGATTAAGATTTTCAGCAAAAATTTCCAG : GAAAAAAAGAGTATCCGCCCGACTTTCTCTGCTGAGCACATCTATGGGGGTACCTTATTGGCAATGTGCTCAAATGATTTCATTTGCTTTTACGATTGGATTGAGTGCAGGTTGATACGACGTATTGATGTTAATGTCAAA : AACCTCTACTGGGCTGACAGTGGTGATCTGGTGGCTATTGCTAGTGATACTTCATTCTACATACTGAAGTATAAT : CGTGATGTTGTCTCTGCACATTTAGATAGTGGAAGATCTGTAGATGAACAAGGTGTTGAAGATGCTTTTGAACTTCTTTATGAGATAAATGAACGTGTCAGAACTGGAATTTGGGTAGGAGATTGTTTCATTTACAACAATTCTTCTTCGAGACTGAATTACTGTGTAGGCGGCGAG : GTGACCACAATGTTTCACTTAGACCGACCCATGTACCTGCTGGGATATCTCGCTAATCAAAGTAGAGTTTTCCTGATTGACAAAGAGTTCAA : TGTCGTGGGATATACTCTTCTGCTCAGCTTGATAGAGTACAAGACACTTGTGATGCGTGGTGACTGGGACAGAGCTAATGCAGTCTTACCATCAATTCCTAAGGATCACCATAACAG : TGTTGCTCGTTTCTTGGAATCACGGGGTATGATTGAGGAAGCATTGGAAGTTGCAACAGACGCTGACTACAGATTTGAACTTGCCATACAGTTGGGTAAATTAGAAATTGCAAAG : GAAATCGCTGTAGTAGCACAGAGTGAATCCAAATGGAAGCAGTTGGGTGAACTGGCAATGTCTGCTGGAATG : CTGGAGATGGCAGAGGATTGTTTGAAATACGCTAATGACTTGAGTGGTTTGCTGATGCTTTATTCCTCGTTAGGAGATGCTGAAGGAATGGCTGAATTAGCATCTCTTGCAAAAGAGCATGGAAGAAACAATGTTGCATTCCTTTGCCTGTTCCTCCTGGGTAAAGTGGAAGATTGTGTTCAGCTGTTGGTTGACAG : CAACCGGATACCTGAGGCTGCATTTATGGCAAGATCTTACCTTCCAAGTAAGGTTTCTGAAATAGTTGCAATGTGGAGGAAGGATCTTAATAAG : GTTAACCAGAAAGCAGCAGAAGCTTTGGCTGATCCTGAAGAATATCCCAACATGTTTGAGCACTGGCAAATTGCACATGCAGTTGAAGCTAGAGTCGCAGAGGAAAG : GGGTGTATACCCACCAGCAGCAGATTATGGAAATTATGCTGATAG</gDNA_template>
            <first_frame> M  G  M  H  S  N  F  *  G  S  F  P  L  C  D  A  S  H  I  *  S  K  R  H  Q  Y  F  C  *  C  I  S  *  S  D  Y  K   : D  L  E  P  W  L  S  *  P  *  L  Y  T  G  C  P  S  E  R  G  *  L  C  R  L  F  Y  W  W  *  *  T  L  S  N  Y  W  F  *  *  S  H  C  *   : G  L  G  L  S  D  K  K  L  C  P  D  S  *  R  S  H  T  Q  C  F  C  C  M  F  S  S  R  S  S  Y  Y  N  D  W  V  *  R  W  Y  C  S  Y  M  A  C  N  Y  L  Q  :  T  R  E  H  V  E  L  W  P  *  K  S  L  G  Y  W  L  H  E  R  F  K  K  :  G  C  N  W  L  R  *  G  Y  H  Y  G  K  T  W  S  R  G  A  C  C  *  H  G  *  *  W  K  S  H  M  G  *  A  *  *  G  S  N  Y  *  H  Q  E  C  G  C  G  L  *   : G  Y  *  W  R  K  I  A  F  G  G  Q  G  I  G  N  L  *  P  I  P  T   : K  L  K  A  *  P  Q  W  K  V  C  C  C  L  W  R  R  *  V  Y  H  I  Y  C  S  G  L  E  K  *  V  I  W  L  S  S  G  I  C  L  V  V  *  W  R  V  C  Y  P  R  K  Y  F  K  D  *  D  F  Q  Q  K  F  P   : G  K  K  E  Y  P  P  D  F  L  C  *  A  H  L  W  G  Y  L  I  G  N  V  L  K  *  F  H  L  L  L  R  L  D  *  V  Q  V  D  T  T  Y  *  C  *  C  Q   : K  P  L  L  G  *  Q  W  *  S  G  G  Y  C  *  *  Y  F  I  L  H  T  E  V  *   : S  *  C  C  L  C  T  F  R  *  W  K  I  C  R  *  T  R  C  *  R  C  F  *  T  S  L  *  D  K  *  T  C  Q  N  W  N  L  G  R  R  L  F  H  L  Q  Q  F  F  F  E  T  E  L  L  C  R  R  R   : G  D  H  N  V  S  L  R  P  T  H  V  P  A  G  I  S  R  *  S  K  *  S  F  P  D  *  Q  R  V  Q  :  C  R  G  I  Y  S  S  A  Q  L  D  R  V  Q  D  T  C  D  A  W  *  L  G  Q  S  *  C  S  L  T  I  N  S  *  G  S  P  *  Q  :  C  C  S  F  L  G  I  T  G  Y  D  *  G  S  I  G  S  C  N  R  R  *  L  Q  I  *  T  C  H  T  V  G  *  I  R  N  C  K   : G  N  R  C  S  S  T  E  *  I  Q  M  E  A  V  G  *  T  G  N  V  C  W  N   : A  G  D  G  R  G  L  F  E  I  R  *  *  L  E  W  F  A  D  A  L  F  L  V  R  R  C  *  R  N  G  *  I  S  I  S  C  K  R  A  W  K  K  Q  C  C  I  P  L  P  V  P  P  G  *  S  G  R  L  C  S  A  V  G  *  Q  :  Q  P  D  T  *  G  C  I  Y  G  K  I  L  P  S  K  *  G  F  *  N  S  C  N  V  E  E  G  S  *  *   : G  *  P  E  S  S  R  S  F  G  *  S  *  R  I  S  Q  H  V  *  A  L  A  N  C  T  C  S  *  S  *  S  R  R  G  K  :  G  C  I  P  T  S  S  R  L  W  K  L  C  *  * </first_frame>
            <second_frame>  W  V  C  T  Q  I  F  E  G  H  S  H  Y  V  M  Q  V  T  F  N  P  K  D  T  N  T  F  A  S  A  S  L  D  R  T  I  K  :  I  W  N  L  G  S  P  D  P  N  F  T  L  D  A  H  L  K  G  V  N  C  V  D  Y  F  T  G  G  D  K  P  Y  L  I  T  G  S  D  D  H  T  A  K  :  V  W  D  Y  Q  T  R  S  C  V  Q  T  L  E  G  H  T  H  N  V  S  A  V  C  F  H  P  D  L  P  I  I  M  T  G  S  E  D  G  T  V  R  I  W  H  A  T  T  Y  R :   L  E  N  T  L  N  Y  G  L  E  R  V  W  A  I  G  Y  M  K  G  S  R  R :   V  V  I  G  Y  D  E  G  T  I  M  V  K  L  G  R  E  V  P  V  A  S  M  D  N  S  G  K  V  I  W  A  K  H  N  E  V  Q  T  I  N  I  K  S  V  G  V  D  Y  E  :  V  T  D  G  E  R  L  P  L  A  V  K  E  L  G  T  C  D  L  Y  P  Q  :  S  L  K  H  N  P  N  G  R  F  V  V  V  C  G  D  G  E  Y  I  I  Y  T  A  L  A  W  R  N  R  S  F  G  S  A  L  E  F  V  W  S  S  D  G  E  Y  A  I  R  E  S  T  S  R  I  K  I  F  S  K  N  F  Q  :  E  K  K  S  I  R  P  T  F  S  A  E  H  I  Y  G  G  T  L  L  A  M  C  S  N  D  F  I  C  F  Y  D  W  I  E  C  R  L  I  R  R  I  D  V  N  V  K  :  N  L  Y  W  A  D  S  G  D  L  V  A  I  A  S  D  T  S  F  Y  I  L  K  Y  N  :  R  D  V  V  S  A  H  L  D  S  G  R  S  V  D  E  Q  G  V  E  D  A  F  E  L  L  Y  E  I  N  E  R  V  R  T  G  I  W  V  G  D  C  F  I  Y  N  N  S  S  S  R  L  N  Y  C  V  G  G  E  :  V  T  T  M  F  H  L  D  R  P  M  Y  L  L  G  Y  L  A  N  Q  S  R  V  F  L  I  D  K  E  F  N :   V  V  G  Y  T  L  L  L  S  L  I  E  Y  K  T  L  V  M  R  G  D  W  D  R  A  N  A  V  L  P  S  I  P  K  D  H  H  N  S :   V  A  R  F  L  E  S  R  G  M  I  E  E  A  L  E  V  A  T  D  A  D  Y  R  F  E  L  A  I  Q  L  G  K  L  E  I  A  K  :  E  I  A  V  V  A  Q  S  E  S  K  W  K  Q  L  G  E  L  A  M  S  A  G  M  :  L  E  M  A  E  D  C  L  K  Y  A  N  D  L  S  G  L  L  M  L  Y  S  S  L  G  D  A  E  G  M  A  E  L  A  S  L  A  K  E  H  G  R  N  N  V  A  F  L  C  L  F  L  L  G  K  V  E  D  C  V  Q  L  L  V  D  S :   N  R  I  P  E  A  A  F  M  A  R  S  Y  L  P  S  K  V  S  E  I  V  A  M  W  R  K  D  L  N  K  :  V  N  Q  K  A  A  E  A  L  A  D  P  E  E  Y  P  N  M  F  E  H  W  Q  I  A  H  A  V  E  A  R  V  A  E  E  R :   G  V  Y  P  P  A  A  D  Y  G  N  Y  A  D   </second_frame>
            <third_frame>   G  Y  A  L  K  F  L  R  V  I  P  I  M  *  C  K  S  H  L  I  Q  K  T  P  I  L  L  L  V  H  L  L  I  G  L  *  R :   F  G  T  L  A  L  L  T  L  T  L  H  W  M  P  I  *  K  G  L  I  V  *  I  I  L  L  V  V  I  N  L  I  *  L  L  V  L  M  I  T  L  L  R :   S  G  T  I  R  Q  E  V  V  S  R  L  L  K  V  T  H  T  M  F  L  L  Y  V  F  I  Q  I  F  L  L  *  *  L  G  L  K  M  V  L  F  V  Y  G  M  Q  L  L  T   : D  S  R  T  R  *  I  M  A  L  K  E  F  G  L  L  V  T  *  K  V  Q  E   : G  L  *  L  V  T  M  R  V  P  L  W  *  N  L  V  E  R  C  L  L  L  A  W  I  I  V  E  K  S  Y  G  L  S  I  M  R  F  K  L  L  T  S  R  V  W  V  W  I  M  R :   L  L  M  E  K  D  C  L  W  R  S  R  N  W  E  L  V  T  Y  T  H  K :   A  *  S  I  T  P  M  E  G  L  L  L  F  V  E  T  V  S  I  S  Y  I  L  L  W  P  G  E  I  G  H  L  A  Q  L  W  N  L  F  G  R  L  M  E  S  M  L  S  E  K  V  L  Q  G  L  R  F  S  A  K  I  S  R :   K  K  R  V  S  A  R  L  S  L  L  S  T  S  M  G  V  P  Y  W  Q  C  A  Q  M  I  S  F  A  F  T  I  G  L  S  A  G  *  Y  D  V  L  M  L  M  S  K :   T  S  T  G  L  T  V  V  I  W  W  L  L  L  V  I  L  H  S  T  Y  *  S  I  I :   V  M  L  S  L  H  I  *  I  V  E  D  L  *  M  N  K  V  L  K  M  L  L  N  F  F  M  R  *  M  N  V  S  E  L  E  F  G  *  E  I  V  S  F  T  T  I  L  L  R  D  *  I  T  V  *  A  A  R :   *  P  Q  C  F  T  *  T  D  P  C  T  C  W  D  I  S  L  I  K  V  E  F  S  *  L  T  K  S  S   : M  S  W  D  I  L  F  C  S  A  *  *  S  T  R  H  L  *  C  V  V  T  G  T  E  L  M  Q  S  Y  H  Q  F  L  R  I  T  I  T   : V  L  L  V  S  W  N  H  G  V  *  L  R  K  H  W  K  L  Q  Q  T  L  T  T  D  L  N  L  P  Y  S  W  V  N  *  K  L  Q  R :   K  S  L  *  *  H  R  V  N  P  N  G  S  S  W  V  N  W  Q  C  L  L  E  C :   W  R  W  Q  R  I  V  *  N  T  L  M  T  *  V  V  C  *  C  F  I  P  R  *  E  M  L  K  E  W  L  N  *  H  L  L  Q  K  S  M  E  E  T  M  L  H  S  F  A  C  S  S  W  V  K  W  K  I  V  F  S  C  W  L  T   : A  T  G  Y  L  R  L  H  L  W  Q  D  L  T  F  Q  V  R  F  L  K  *  L  Q  C  G  G  R  I  L  I  R :   L  T  R  K  Q  Q  K  L  W  L  I  L  K  N  I  P  T  C  L  S  T  G  K  L  H  M  Q  L  K  L  E  S  Q  R  K   : G  V  Y  T  H  Q  Q  Q  I  M  E  I  M  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117883" stop="117993"/>
                    <exon start="118091" stop="118222"/>
                    <exon start="118304" stop="118452"/>
                    <exon start="120023" stop="120091"/>
                    <exon start="120370" stop="120520"/>
                    <exon start="120641" stop="120706"/>
                    <exon start="121215" stop="121403"/>
                    <exon start="121744" stop="121884"/>
                    <exon start="121982" stop="122056"/>
                    <exon start="122147" stop="122323"/>
                    <exon start="122417" stop="122508"/>
                    <exon start="122602" stop="122718"/>
                    <exon start="123309" stop="123423"/>
                    <exon start="123544" stop="123615"/>
                    <exon start="124113" stop="124309"/>
                    <exon start="124403" stop="124496"/>
                    <exon start="125057" stop="125163"/>
                    <exon start="125416" stop="125458"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2097</number_coding_nucleotides>
                  <number_encoded_amino_acids>699</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTRSCVQTLEGHTHNVSAVCFHPDLPIIMTGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKGSRRVVIGYDEGTIMVKLGREVPVASMDNSGKVIWAKHNEVQTINIKSVGVDYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAIRESTSRIKIFSKNFQEKKSIRPTFSAEHIYGGTLLAMCSNDFICFYDWIECRLIRRIDVNVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAHLDSGRSVDEQGVEDAFELLYEINERVRTGIWVGDCFIYNNSSSRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVFLIDKEFNVVGYTLLLSLIEYKTLVMRGDWDRANAVLPSIPKDHHNSVARFLESRGMIEEALEVATDADYRFELAIQLGKLEIAKEIAVVAQSESKWKQLGELAMSAGMLEMAEDCLKYANDLSGLLMLYSSLGDAEGMAELASLAKEHGRNNVAFLCLFLLGKVEDCVQLLVDSNRIPEAAFMARSYLPSKVSEIVAMWRKDLNKVNQKAAEALADPEEYPNMFEHWQIAHAVEARVAEERGVYPPAADYGNYAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="125662" PGL_stop="127191"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125662" e_stop="125714"/>
            <exon e_start="125884" e_stop="126101"/>
            <exon e_start="126836" e_stop="127190"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.566"/>
          <exon-intron don_prob="0.621" acc_prob="0.996" e_score="0.904"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.566">
            <gDNA_exon_boundary e_start="125662" e_stop="125714" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="125715" i_stop="125883" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="0.904">
            <gDNA_exon_boundary e_start="125884" e_stop="126101" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.621" acc_prob="0.996">
            <gDNA_intron_boundary i_start="126102" i_stop="126835" i_length="734"/>
          </intron>
          <exon e_serial="3" e_score="0.949">
            <gDNA_exon_boundary e_start="126836" e_stop="127190" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125662" stop="125714"/>
              <exon start="125884" stop="126101"/>
              <exon start="126836" stop="127190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446880" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAAGTAGAAAACATAGTGTTAGCATTTTATATTATTTTGTTTATACAAT : GTTGTGGAACAGAATGGTGATGAGGTGCAAGAGCAGGGACAAGATGGCACTCAACAGGAGAGCCAAGAAGAGGCTGTTGTAGATGCTGAATCTACTGATAGTGCAGTACTCGTCAATGGAAATGAGGCTGAAGAAGAGTGGGGTACGAATACTGAAGGAAAACCGTCAGCCTAAAAGCAATTGGTTGGGCCGGTGTGAAAATCCTAATTTTGTAGCTG : TGCTTACACCACACAACTAGGTTCAGTGAAGACAGTTGGTTCCAGCTGTATGTAATCCGTTCTTATGGTGAGAATTGAGTTTTCTGCATCAAGCACAATTTTATGCATGCTTTGTCTGATAAACAGTTCTTATCTGTATGTCTTCTTGATTGGAGGTGCTTCAAAATTTTCTTATTTACCAAGTATTTTGTGTGTTAACAACACTTGCACGCATATCATTTCATTTGCTTGACTGGTGTGCCCTTGTAGAATATTTGAACTTGTACATTTAACCTTGTTCTGCCTTGGGCTATATGCAAGAAACTGAAGAAACCATGTTTCCCCTCCTAGAATTTGGTCAATTTTTGTGATTCAT</gDNA_template>
            <first_frame> K  R  S  R  K  H  S  V  S  I  L  Y  Y  F  V  Y  T  M :   L  W  N  R  M  V  M  R  C  K  S  R  D  K  M  A  L  N  R  R  A  K  K  R  L  L  *  M  L  N  L  L  I  V  Q  Y  S  S  M  E  M  R  L  K  K  S  G  V  R  I  L  K  E  N  R  Q  P  K  S  N  W  L  G  R  C  E  N  P  N  F  V  A   : V  L  T  P  H  N  *  V  Q  *  R  Q  L  V  P  A  V  C  N  P  F  L  W  *  E  L  S  F  L  H  Q  A  Q  F  Y  A  C  F  V  *  *  T  V  L  I  C  M  S  S  *  L  E  V  L  Q  N  F  L  I  Y  Q  V  F  C  V  L  T  T  L  A  R  I  S  F  H  L  L  D  W  C  A  L  V  E  Y  L  N  L  Y  I  *  P  C  S  A  L  G  Y  M  Q  E  T  E  E  T  M  F  P  L  L  E  F  G  Q  F  L  *  F   </first_frame>
            <second_frame>  K  E  V  E  N  I  V  L  A  F  Y  I  I  L  F  I  Q   : C  C  G  T  E  W  *  *  G  A  R  A  G  T  R  W  H  S  T  G  E  P  R  R  G  C  C  R  C  *  I  Y  *  *  C  S  T  R  Q  W  K  *  G  *  R  R  V  G  Y  E  Y  *  R  K  T  V  S  L  K  A  I  G  W  A  G  V  K  I  L  I  L  *  L  :  C  L  H  H  T  T  R  F  S  E  D  S  W  F  Q  L  Y  V  I  R  S  Y  G  E  N  *  V  F  C  I  K  H  N  F  M  H  A  L  S  D  K  Q  F  L  S  V  C  L  L  D  W  R  C  F  K  I  F  L  F  T  K  Y  F  V  C  *  Q  H  L  H  A  Y  H  F  I  C  L  T  G  V  P  L  *  N  I  *  T  C  T  F  N  L  V  L  P  W  A  I  C  K  K  L  K  K  P  C  F  P  S  *  N  L  V  N  F  C  D  S  </second_frame>
            <third_frame>   K  K  *  K  T  *  C  *  H  F  I  L  F  C  L  Y  N  :  V  V  E  Q  N  G  D  E  V  Q  E  Q  G  Q  D  G  T  Q  Q  E  S  Q  E  E  A  V  V  D  A  E  S  T  D  S  A  V  L  V  N  G  N  E  A  E  E  E  W  G  T  N  T  E  G  K  P  S  A  *  K  Q  L  V  G  P  V  *  K  S  *  F  C  S  C :   A  Y  T  T  Q  L  G  S  V  K  T  V  G  S  S  C  M  *  S  V  L  M  V  R  I  E  F  S  A  S  S  T  I  L  C  M  L  C  L  I  N  S  S  Y  L  Y  V  F  L  I  G  G  A  S  K  F  S  Y  L  P  S  I  L  C  V  N  N  T  C  T  H  I  I  S  F  A  *  L  V  C  P  C  R  I  F  E  L  V  H  L  T  L  F  C  L  G  L  Y  A  R  N  *  R  N  H  V  S  P  P  R  I  W  S  I  F  V  I  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125688" stop="125714"/>
                    <exon start="125884" stop="126057"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFILFCLYNVVEQNGDEVQEQGQDGTQQESQEEAVVDAESTDSAVLVNGNEAEEEWGTNTEGKPSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="125670" e_stop="125726"/>
            <exon e_start="125884" e_stop="126101"/>
            <exon e_start="126836" e_stop="127191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.561"/>
          <exon-intron don_prob="0.621" acc_prob="0.996" e_score="0.917"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.561">
            <gDNA_exon_boundary e_start="125670" e_stop="125726" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="125727" i_stop="125883" i_length="157"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="125884" e_stop="126101" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.621" acc_prob="0.996">
            <gDNA_intron_boundary i_start="126102" i_stop="126835" i_length="734"/>
          </intron>
          <exon e_serial="3" e_score="0.947">
            <gDNA_exon_boundary e_start="126836" e_stop="127191" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125670" stop="125726"/>
              <exon start="125884" stop="126101"/>
              <exon start="126836" stop="127191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417802" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGAAAACATAGTGTTAGCATTTTATATTATTTTGTTTATACAATGCTGGGGATTAG : GTTGTGGAACAGAATGGTGATGAGGTGCAAGAGCAGGGACAAGATGGCACTCAACAGGAGAGCCAAGAAGAGGCTGTTGTAGATGCTGAATCTACTGATAGTGCAGTACTCGTCAATGGAAATGAGGCTGAAGAAGAGTGGGGTACGAATACTGAAGGAAAACCGTCAGCCTAAAAGCAATTGGTTGGGCCGGTGTGAAAATCCTAATTTTGTAGCTG : TGCTTACACCACACAACTAGGTTCAGTGAAGACAGTTGGTTCCAGCTGTATGTAATCCGTTCTTATGGTGAGAATTGAGTTTTCTGCATCAAGCACAATTTTATGCATGCTTTGTCTGATAAACAGTTCTTATCTGTATGTCTTCTTGATTGGAGGTGCTTCAAAATTTTCTTATTTACCAAGTATTTTGTGTGTTAACAACACTTGCACGCATATCATTTCATTTGCTTGACTGGTGTGCCCTTGTAGAATATTTGAACTTGTACATTTAACCTTGTTCTGCCTTGGGCTATATGCAAGAAACTGAAGAAACCATGTTTCCCCTCCTAGAATTTGGTCAATTTTTGTGATTCATA</gDNA_template>
            <first_frame> *  K  T  *  C  *  H  F  I  L  F  C  L  Y  N  A  G  D  *  :  V  V  E  Q  N  G  D  E  V  Q  E  Q  G  Q  D  G  T  Q  Q  E  S  Q  E  E  A  V  V  D  A  E  S  T  D  S  A  V  L  V  N  G  N  E  A  E  E  E  W  G  T  N  T  E  G  K  P  S  A  *  K  Q  L  V  G  P  V  *  K  S  *  F  C  S  C :   A  Y  T  T  Q  L  G  S  V  K  T  V  G  S  S  C  M  *  S  V  L  M  V  R  I  E  F  S  A  S  S  T  I  L  C  M  L  C  L  I  N  S  S  Y  L  Y  V  F  L  I  G  G  A  S  K  F  S  Y  L  P  S  I  L  C  V  N  N  T  C  T  H  I  I  S  F  A  *  L  V  C  P  C  R  I  F  E  L  V  H  L  T  L  F  C  L  G  L  Y  A  R  N  *  R  N  H  V  S  P  P  R  I  W  S  I  F  V  I  H  </first_frame>
            <second_frame>  R  K  H  S  V  S  I  L  Y  Y  F  V  Y  T  M  L  G  I  R :   L  W  N  R  M  V  M  R  C  K  S  R  D  K  M  A  L  N  R  R  A  K  K  R  L  L  *  M  L  N  L  L  I  V  Q  Y  S  S  M  E  M  R  L  K  K  S  G  V  R  I  L  K  E  N  R  Q  P  K  S  N  W  L  G  R  C  E  N  P  N  F  V  A   : V  L  T  P  H  N  *  V  Q  *  R  Q  L  V  P  A  V  C  N  P  F  L  W  *  E  L  S  F  L  H  Q  A  Q  F  Y  A  C  F  V  *  *  T  V  L  I  C  M  S  S  *  L  E  V  L  Q  N  F  L  I  Y  Q  V  F  C  V  L  T  T  L  A  R  I  S  F  H  L  L  D  W  C  A  L  V  E  Y  L  N  L  Y  I  *  P  C  S  A  L  G  Y  M  Q  E  T  E  E  T  M  F  P  L  L  E  F  G  Q  F  L  *  F  I </second_frame>
            <third_frame>   E  N  I  V  L  A  F  Y  I  I  L  F  I  Q  C  W  G  L   : G  C  G  T  E  W  *  *  G  A  R  A  G  T  R  W  H  S  T  G  E  P  R  R  G  C  C  R  C  *  I  Y  *  *  C  S  T  R  Q  W  K  *  G  *  R  R  V  G  Y  E  Y  *  R  K  T  V  S  L  K  A  I  G  W  A  G  V  K  I  L  I  L  *  L  :  C  L  H  H  T  T  R  F  S  E  D  S  W  F  Q  L  Y  V  I  R  S  Y  G  E  N  *  V  F  C  I  K  H  N  F  M  H  A  L  S  D  K  Q  F  L  S  V  C  L  L  D  W  R  C  F  K  I  F  L  F  T  K  Y  F  V  C  *  Q  H  L  H  A  Y  H  F  I  C  L  T  G  V  P  L  *  N  I  *  T  C  T  F  N  L  V  L  P  W  A  I  C  K  K  L  K  K  P  C  F  P  S  *  N  L  V  N  F  C  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0081D06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 525 chains have been computed
$ 
$ memory statistics:
$ 3770712 bytes spliced alignments in total
$ 223 spliced alignments have been stored
$ 16909 bytes was the average size of a spliced alignment
$ 50840 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 2420 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 602 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-23 02:31:23
-->
