<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-17 14:26:44"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0081D06-5640B/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-0kOsnx/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0kOsnx/sgn_marker_seqs" ref_id="SGN-M7116" ref_strand="+" ref_description="SGN-M7116 C2_At1g79810 [cosii_markers]">
      <seq>ttgtgtctcaaatttgtctgcgtggtcaagtcagtgctgaactgaaaagattgctcaccggggttccggtacgcaatcgccgccggcgaccaccaatttcttcatcgcatatcccactatagttaaaattcattgaattatctagtacggccgagatatggacagacaaaacctagcttcatcctccgctccccgtggtggtgcgactgtccatcctcccccacaacacgatgcttggatcaatacttaccggaatttgcatcctcaatggcaatctcttcttcctccaccgcaacagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactggacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttgatgaagccaggaatgttatttcaatatgaaccagaacttgatgcttttcttgagtttctaatctggcgattttctatctgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgaacgtgcaagtgagattagaggaaaagtgaggactggattagagggaccaggacttactgttgctcaaaagatatggtactgtgttgcaacagttggtggtcaatatatatgggctcgtctacaatcattttctgcttttcggagatggggtgactctgagcagaggtccttggcacgtggagtgtggttgttaatgcaacggatggagggtatctataaagcagcatcttttagcaatttacttctctttctttacacaggaaggttcaggaatctcattgaaagagctttaagagctagacttgtttatgggagcccaaatatgaacagagctgtgagctttgagtacatgaatcgtcagttggtctggaatgaattctcggaactgctgctcttgcttcttccccttctcaattcagcatctgtcaagagtttccttcgtccattctcaaaggacaaatcttcagattcttcagtagatgaaactttatgccccatctgccagggaaccccatcaattccatttgtagctatcccttgtcagcataggtactgttactactgtcttcaaacaaggtgctctgcatcttcatcgtttcgttgccccagatgtggtgaaccagttgctgctatgcaacggcatggtggtttagtcagcaacattcctcagaaacaatgattgttctgcaaagtgattgaaatgataaaaaaaagggaagctaagttaaactatagatcaaaagttgctcaaaagacaacttgacaatgaaactaggtatctagattccttaataaagcttattgttctgctttattgagtgctttaattttttaatagtgtggttgtcccttttcctgtattttacatctcatttgtttatttaattgaaagataattttctcaaaaaaaaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-5640B/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="12453" stop="118927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12753" g_stop="13050" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13852" g_stop="13965" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="412" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14072" g_stop="14225" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="566" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14226" i_stop="15070" i_length="845">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15071" g_stop="15207" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="703" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15208" i_stop="16988" i_length="1781">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16989" g_stop="17089" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="804" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17090" i_stop="17888" i_length="799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17889" g_stop="18006" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="922" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18007" i_stop="18277" i_length="271">
            <donor d_prob="0.230" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18278" g_stop="18444" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="923" r_stop="1089" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18445" i_stop="18998" i_length="554">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18999" g_stop="19354" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1090" r_stop="1445" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19355" i_stop="19682" i_length="328">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.361" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="19683" g_stop="19700" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1446" r_stop="1463" r_length="18" r_score="0.722"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-M7116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12753" e_stop="13050"/>
          <exon e_start="13852" e_stop="13965"/>
          <exon e_start="14072" e_stop="14225"/>
          <exon e_start="15071" e_stop="15207"/>
          <exon e_start="16989" e_stop="17089"/>
          <exon e_start="17889" e_stop="18006"/>
          <exon e_start="18278" e_stop="18444"/>
          <exon e_start="18999" e_stop="19354"/>
          <exon e_start="19683" e_stop="19700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTCTCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAGGTTAGAAAAACATCATTGCTTAATCTTGTTGCTCCTTTTCTGTAAGTAGCTTGTATCAACCTTTTTTGTATCTCAGTGATGTTAGAAATTAAATTTGTTATATTGTGTTGCAAGCTATGCATCGATGAGATGGTTCTAGATTCTACTTTAGGGATTAATTTTAGACTTGCTATAGAATTTGAAACTTCACAGTCTCTAGTAGCTCAGCTGATCTATTAATAATTAAAAAGATTAAGACCAAAGTATCTAGAAACGCAAAAGATAAAGATAAAAAGGATTATAAAACAGTAATTCGAGATTAGTTGCCAACTACTTTCAGAAAAACAATGTATTGGAGCAGACAAAGGAAGATCATCAAAAATATGTCAATGTGAGGAGGTGACTTATTTGCCCAAAAAATGGCTTACTAAAGAAAGCATAAGAAGAACGAGTACAAAGTACAACCATCTTCTTCAGTTTGTAATGGAGGGACCATTGGAATTGACTTGTAAAATCTCTTTGGTCTTACTTTGTGTTTGTGTTTGAAATGAAGAGGTTGGCAGCTTGATTTAATTATTTTTGATATGGTAAAAATGTTTAAGGTTGGCAGCTTGATGTAATCACATTTCTTGTTTCTTGCATTAACTGCAATAATTTCAGTTGTAGTCTTATAGTTTGTTAAGTCTAAATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAGGTACTGCTCTCTCTGCCTCACATATTCGACACGTTTGCGTGCATGCCTGTTTTACTGGTGACAAATATGTTTATCACTAAGAGAACTCTTCGTTCTCTAATAGATAATACTCTTCAGTTTTGTTGACTTCAATTGTTAGAAATAATTAGTTATTAAGTCCTCCAATATTCTGACTTTGTGTAACAACTTTTAACCTTGAAAAGGAACCCCTCGATTTTTATTTTGTTTTGGCTTAGGCATATGAAATGTTAAGAAGGAAAATTTTTATATGCTTTGGAACTTCAAAATGTGCAACTTCAATGTAGGATCAGTAAAAACATCTATCACTGAAAAGCCTTGATCATTGGTATGAGTAGAATATTGACAAACAACAAGGATGTTGCCATGGACCATGAGAAACTAGTAGCCAAATTTTAGCTCAAAATCAATTTAGGTGATTTCTTCATGCATATCTTAACTTTGATAGATGTAGTTACCCGATGCATATGCTGTCAGGAGGTAGTATGCGCCGAAGGAGTAGTTGAGCTGCGTGCAAGTTAGTCCGCATACCACCATTATTATAAATACGGTGTAGAGTATTAACAAAATTGTGTCATCTAGGATCTTTTAGTCTGAAGATCATAAATAACATTGTAGTCAAGAACAATGAGATTCTTATGGTAACAACATGTCCAACAAAACTTTGTTATGTCATGGAATCTCCACAGCAGGCAATATTCTACATATAGAAAAGAAGTAGGAATTAGAAGTATTTCAGTTTGATTCTTTCCCCTGATCTTCATATAAATACAGATAGTATCAAAAATAAATAAAATTCAGATGAATAATAATTTTCCTTCAGCAGTATAATACTTACGGAACTTCTGAAAGCATTTTCTTGATAACTAGCAAAAATAAATGTTAATTTGAAATACTAGAGCAGAGCTTGTCTGTATTTAATAATCCAAATGACCAAATGTATTCTTGTGCCTTTTGTTTCAGCCTATCCAAATTTGTTTAATTTTCTCGAAAAGAAAATACTTGCATACGCTACATGAATACTTCTGCTGGAGAAGGGTATCATGTATATTCAATGTTATAGTGGTATTCTATCTAGCTGTTAGTTCTCTTTTATTGATTAACTAATCTTTTTGGCCATGTTATTACAATATGAGTAGCAATTGACCTTATCAAAACAAAATAGGAAAGAAGAGTTGAATTGATGGGGTCACATTTAGGGTCTACATGCTACTTTTAAGGTACCACGATTATTGAGGTAAACAATATATTCAGGGCCTAGATTATCAAGACGTGAGATAAACAATTCATTGATTAAATATTAGATTAGATGGGGAAATACGAAAGATCACAAGATATTTTCTCAAGTATGAAGAAATAGAAAAAAGTTAGTTCAAAAGTAAGGTGGACAATCAGGTTAAAATATGATGTCATGCAGCTTTCCTTTTTGACGTAATAGAAGAGGACAATTGGAATATGAAGTTGGGGAAATGTGAGATTGAGGAAGTATTGAAAATTCAATGTCATAGAAAAAGTACAAGTTTGTCCAAGTTTGGAAGCCATGTACATTTGCATAGTACAGTTTAAAGTCTTATGTTGATATCGCTGTTCAGTTGAACAGCTTTTGAAATAGGATTGGGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACTTGAAATCGTGTTAGTTTAATGAATAGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACAGATAAATTTATTCGTCACTTTTTAATTATGTATTTGCTTCAGAGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAGGTATATCTCTTACTGCAAAGACTTTACTTTTTATTTCTTTTTCAATGCATAACATGACCACCGGATAAAAGAAGAAGATGACAGAAATCTAGTTCACAAAGTAGTTCTGTCAGTAATACTGCCTGAGTCTGTGCTGCCTGAATCTGTGCTGTAAGAACTAACAGACCGGTGCATGGGTATCAGAGGCACACATATGAGCTTGTATTGCTTTATGACAAATTTTCAATGGGAAAAGGTTAAAATAGGGAACTTTCTAAGTTTGAATCTGTGGAGAATGTTCTATTAAAGAGGTCATATCAGGATGAGTTGAAACTGACCAAGTTCTTATTGTTTCAAATGATATATTACAAACTTTTTGAGTTGGGAACCATCATTTCGTGGAAAAACACTTTTAGTCGAGGGGCATACGTTGAGAACTTGCAATAAAAGCCCCCATTTTTCTTCTGAAAAGCAAATGGCATCTAAGCTTCATTGTTTCTTTGTTTTTACTTGACTGTAGTGAGCTATGGCCACAATATCTGTCATCAATTTGTACATGCATCTCCATCCAATCAGACAGTGATTCCTCGTATGAGGGACTCAGGTCCCCAACTTAGTGCTGGAATCATGCGGCATGATAAACTTTTTGCACATTAGGATGGTTGATACTACTGATTCTTTAAAGATATATGGGAGCCCTAATATGCACAGTGCATCATTTGGTTGTAATAAATTTCCCTTGCATGTGATCTGGCCAATAAATTTAACACATTACAACTTCTTACATTAATGGTTTTCTACATGTATCAACTACATGCAGGTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCGGTAATTGTCCTTCCATTGTCGTTATCTCACAATATGCCCGTCCAGAAAGTATTAAAAAAGACTCACTAAGAAATTTCTAGATAGTTTGAATCATTAACAATATAGAGTTTTACATATTCTTTTAGCTGTTTTACTGGATTGTAAATTTTTTTTGCTTTACAGTTCAAACTTTGCAGCTTCTGTTTCTGGCTTTACCTTGTTGACATGTTTGGTTTCTCAGTAGGCAAACAATGTGAAGGAGTTGGATTTTAAACAATTTTCTAATATGCAGGAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAGGTATGTACATTTACATGCTTTCATTTATACAATAGAATGGTAATGCAGTATTCTCATATATGCTTATATGCCTTTATTAAGAACATACTTCGACGTTTCTTAACTGAAGAAATCCTTATCATAGAATAATGAGGATTTGTGGAAATTGCTGCTAGACAATCCTAGGTTAGTGTAGGCATTATTATTAATGCTCTTTCCAGGTGAAAATTGTTTGGACCGTTGTGTTGAGTATGGTTCTAATATTACTGTCGGCACAGAACATCAGAGTCAAAACTACTTTTACTTCAGGTTTACAACCAAAATAAGTTTTCATTACATTGTTTGTATCACCTCGTCTGCAACTTAAAGATGATTGAGTCCAGTTTCTACAAGCCAACCATGGTTCTCATATTAGGAGCTATTGAGCTTCTCGAAATCATATATATGCTTTCTTTCGTTGGTCTTTTGCCATGCTTTCTATTCGACAGTTTTCAATGTTCAGAATCATTTCTATCGTTAGTTTGCTTTGCATAAATGATTCTGAAATTTCAGGTGTTTGTATTTCAATGTTATAGGTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTTATTGAGTGCTTTAATTTTTTAATAGTGTGGTTGTCCCTTTTCCTGTATTTTACATCTCATTTGTTTATTTAATTGAAAGATAATTTTCTCAATTGTTGGATCAGTCTACACGCGATTGATTCAATTTTTGATGAAATGACTCTAAAAGTTCTACTTTTAACTTTGATTACGGCAACTTTTGAGAGGAAATCATAAACATAATTTTCATTTCCTTAAGGTTGTCAATTTGCAAATTAGCTAAGGTGAGAAAAAGTGTGTCAGTTAACTTTTGAAATGGGAAATAACAAGGACCTGAAAGATTGAAAACTTACACCCAAATGTATTAAAATACCCTTTTATCACGTGGTTTTAAACATATCACGTGGAAAATTAAAGATAAAGTATTTTAAAAAAAGAAAGGGATTATTCTTTTTGAAACAGACTAAAAAAAATAGGATC</genome_strand>
        <mrna_strand>TTGTGTCTCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG...............................................................................................................................................................................................................................................................................GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTTATTGAGTGCTTTAATTTTTTAATAGTGTGGTTGTCCCTTTTCCTGTATTTTACATCTCATTTGTTTATTTAATTGAAAGATAATTTTCTCAA........................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0kOsnx/sgn_marker_seqs" ref_id="SGN-M7116-2" ref_strand="+" ref_description="SGN-M7116-2 C2_At1g79810-2 [cosii_markers]">
      <seq>cgtggtcaagtcagtgctgaactgaaaagattgctcaccgggctccggtacgcaatcgccgccggcgaccaccaatttgttcatcgcatatcccactatagttaaaattcattgaattacctagtacggccgagatatggacagacaaaacctagcttcatcgtccgctccccgtggtggtgccactgtccatcctcccccacaacacgatgcttggatcaatacctaccggaattttcatcctcagtggcagtctcttcttcctccaccgcaccagtcagccattccaatatcaatatccagagttaatcaggtagatgctggaagactagacattgaaatgtcagccatgctaaaagagcagttggttaaggtcttttctttaatgaagccaggaatgttatttcaatatgaaccagaacttgatgctttccttgagtttctaatctggcgattttctatttgggttgataagcctactcctggtaatgctctcatgaatctgagatacagagatgagcgtgcaagtgagattagaggaaaagtgaggactggattagagggaccaggacttactgttgctcaaaagatatggtactgtgttgcaacagttggtggtcaatatatatgggctcgtctacaatcattttctgcttttcggagatggggcgactctgagcagggtccttggcacgtgggagtgtggttgttatgcaacggnatggaggggatctataaagcagcatcttttagcaatttacttctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-5640B/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="12473" stop="17374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12773" g_stop="13050" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13852" g_stop="13965" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="391" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14072" g_stop="14225" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="545" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14226" i_stop="15070" i_length="845">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15071" g_stop="15207" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="682" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15208" i_stop="16988" i_length="1781">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16989" g_stop="17074" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="768" r_length="86" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-M7116-2" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7116-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12773" e_stop="13050"/>
          <exon e_start="13852" e_stop="13965"/>
          <exon e_start="14072" e_stop="14225"/>
          <exon e_start="15071" e_stop="15207"/>
          <exon e_start="16989" e_stop="17074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAGGTACTCTCTCCGCCCATTCATTTTATGCCTCAATTTTTTATTATGACACTTGAGATAACTGATTTCCAGTTAGGGCAGAGACTTTTTGAAATATATATTTATTTTGGTATCCGCACCTGCTCAATTAAACTTGTGGACTTCGAGAAATTTCCATTTGTCTCCCATATCTGTTCCATTTTATTATGTATATTTGTTCTTTACTACAGTATTTCCCACAAAAACACTGTCTTTCTTATTGGACTTACTCCGAAGAAGCATTATAAGTCATTGTTTCAGTTTTGATGATAATAGGCTGTGGTTTGTCTGTCTATTTAGTTATGGAAACTTTGATGGAGCTTAGAACATTCATAGAAAAAGTTCTGATACGGACATTTGCACATCTACGTTTTTTTTTATTGGGGGTAGGATACTAGAAAAATGGATTTAGTTCCCCTAGTCAGGACCAGATTAGCTTAAATTTTCTTCAAGTTTTATGCAACCTGGGATGATGTTAATGGAAATACAAGACGTGGAGCTTCATTGTGATAAAGATCAGAAATACAAGAAAGGAAAGAAAAGACTAGCCGTTCTCTGGAAATTGTTGATGGTTTTAGTGTGTTATCCCATGGGAATTTACTTATTTCTTCATTGTAACACACAAAAGCTGTTTTCTTTCCTTTTCTGTTGTAAAGTTCTTAAATGTAGATCTTTTTACTGTTGGGGCTCAGAGAAGGATGAGTAAGGAGTTCCGTTTTGAGGTTTTATTTGCTGATTTTTTTGCTTCCACCACTGAAATTTCATGTTGATAACTTCTTTTGGCAGTCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAGGTACCTATCGTGTAACTTTTTGTTCTATCATCAAATTCATCAAGTCTTCAGTGATTCTGTTATCTAACAGAAGTTTTGATATCTGTTTTTTTTTTTTTGGGATTAGCCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAGGTTAGAAAAACATCATTGCTTAATCTTGTTGCTCCTTTTCTGTAAGTAGCTTGTATCAACCTTTTTTGTATCTCAGTGATGTTAGAAATTAAATTTGTTATATTGTGTTGCAAGCTATGCATCGATGAGATGGTTCTAGATTCTACTTTAGGGATTAATTTTAGACTTGCTATAGAATTTGAAACTTCACAGTCTCTAGTAGCTCAGCTGATCTATTAATAATTAAAAAGATTAAGACCAAAGTATCTAGAAACGCAAAAGATAAAGATAAAAAGGATTATAAAACAGTAATTCGAGATTAGTTGCCAACTACTTTCAGAAAAACAATGTATTGGAGCAGACAAAGGAAGATCATCAAAAATATGTCAATGTGAGGAGGTGACTTATTTGCCCAAAAAATGGCTTACTAAAGAAAGCATAAGAAGAACGAGTACAAAGTACAACCATCTTCTTCAGTTTGTAATGGAGGGACCATTGGAATTGACTTGTAAAATCTCTTTGGTCTTACTTTGTGTTTGTGTTTGAAATGAAGAGGTTGGCAGCTTGATTTAATTATTTTTGATATGGTAAAAATGTTTAAGGTTGGCAGCTTGATGTAATCACATTTCTTGTTTCTTGCATTAACTGCAATAATTTCAGTTGTAGTCTTATAGTTTGTTAAGTCTAAATTAGCAAGGGTGTATAATCAATCTGATTTGGAAGGATTGTCTTGGAAAATCTCCTTTGTCTTACTTTGTGTTTGAAGTGCTAAGGTTGACAGCTTGATGCAGTTTCATTTTTTCTTTCTTGCATCAACTGCTATAATTTCAGTTGTAGTTCTGTTTCCTTTTCCATGTTTTTTATAGTGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAGGTACTGCTCTCTCTGCCTCACATATTCGACACGTTTGCGTGCATGCCTGTTTTACTGGTGACAAATATGTTTATCACTAAGAGAACTCTTCGTTCTCTAATAGATAATACTCTTCAGTTTTGTTGACTTCAATTGTTAGAAATAATTAGTTATTAAGTCCTCCAATATTCTGACTTTGTGTAACAACTTTTAACCTTGAAAAGGAACCCCTCGATTTTTATTTTGTTTTGGCTTAGGCATATGAAATGTTAAGAAGGAAAATTTTTATATGCTTTGGAACTTCAAAATGTGCAACTTCAATGTAGGATCAGTAAAAACATCTATCACTGAAAAGCCTTGATCATTGGTATGAGTAGAATATTGACAAACAACAAGGATGTTGCCATGGACCATGAGAAACTAGTAGCCAAATTTTAGCTCAAAATCAATTTAGGTGATTTCTTCATGCATATCTTAACTTTGATAGATGTAGTTACCCGATGCATATGCTGTCAGGAGGTAGTATGCGCCGAAGGAGTAGTTGAGCTGCGTGCAAGTTAGTCCGCATACCACCATTATTATAAATACGGTGTAGAGTATTAACAAAATTGTGTCATCTAGGATCTTTTAGTCTGAAGATCATAAATAACATTGTAGTCAAGAACAATGAGATTCTTATGGTAACAACATGTCCAACAAAACTTTGTTATGTCATGGAATCTCCACAGCAGGCAATATTCTACATATAGAAAAGAAGTAGGAATTAGAAGTATTTCAGTTTGATTCTTTCCCCTGATCTTCATATAAATACAGATAGTATCAAAAATAAATAAAATTCAGATGAATAATAATTTTCCTTCAGCAGTATAATACTTACGGAACTTCTGAAAGCATTTTCTTGATAACTAGCAAAAATAAATGTTAATTTGAAATACTAGAGCAGAGCTTGTCTGTATTTAATAATCCAAATGACCAAATGTATTCTTGTGCCTTTTGTTTCAGCCTATCCAAATTTGTTTAATTTTCTCGAAAAGAAAATACTTGCATACGCTACATGAATACTTCTGCTGGAGAAGGGTATCATGTATATTCAATGTTATAGTGGTATTCTATCTAGCTGTTAGTTCTCTTTTATTGATTAACTAATCTTTTTGGCCATGTTATTACAATATGAGTAGCAATTGACCTTATCAAAACAAAATAGGAAAGAAGAGTTGAATTGATGGGGTCACATTTAGGGTCTACATGCTACTTTTAAGGTACCACGATTATTGAGGTAAACAATATATTCAGGGCCTAGATTATCAAGACGTGAGATAAACAATTCATTGATTAAATATTAGATTAGATGGGGAAATACGAAAGATCACAAGATATTTTCTCAAGTATGAAGAAATAGAAAAAAGTTAGTTCAAAAGTAAGGTGGACAATCAGGTTAAAATATGATGTCATGCAGCTTTCCTTTTTGACGTAATAGAAGAGGACAATTGGAATATGAAGTTGGGGAAATGTGAGATTGAGGAAGTATTGAAAATTCAATGTCATAGAAAAAGTACAAGTTTGTCCAAGTTTGGAAGCCATGTACATTTGCATAGTACAGTTTAAAGTCTTATGTTGATATCGCTGTTCAGTTGAACAGCTTTTGAAATAGGATTGGGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACTTGAAATCGTGTTAGTTTAATGAATAGTACTAACTTGTATAATACTGTTTCTTATAGTGTCAACAGATAAATTTATTCGTCACTTTTTAATTATGTATTTGCTTCAGAGGTCCTTGGCACGT-GGAGTGTGGTTGTTAATGCAACGG-ATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTT</genome_strand>
        <mrna_strand>CGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACC-GGGCTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTGTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTACCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCGTCCGCTCCCCGTGGTGGTGCCACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACCTACCGGAATTTTCATCCTCAGTGGCAGTCTCTTCTTCCTCCACCGCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTAGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTAATGAAG..........................................................................................................CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTCCTTGAGTTTCTAATCTGGCGATTTTCTATTTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAGCGTGCAAGTGAGATTAGAGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGCGACTCTGAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-GGTCCTTGGCACGTGGGAGTGTGGTTGTT-ATGCAACGGNATGGAGGGGATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0kOsnx/sgn_marker_seqs" ref_id="SGN-M3961" ref_strand="+" ref_description="SGN-M3961 C2_At1g52200 [cosii_markers]">
      <seq>atactatttggataacaatgggaagagttgaagcaaacaatgaaggagaaacatctcaggcagagagtggtactgaaccagctgcctcacagcctcaacagttccaaggagtacaaagtgtgtatcagtcaccatcacacttaacaattggagctccttggagtactggcttatttgattgtcatctggaccaaactaatgctgtcatgacggcgttcttaccttgtgtaacatttggacaaatagcagaagtccttgatgcaggacaaatgacatgccctttggggactttcatatacatgctgatgatgcctgctgtctgctctcagtggatcatgggctcaaaatatagaacccaattgagacaaagatataatctagtggaagctccttattcagacatgatttcccatatgttctgtccatgttgctctctttgtcaagaattcagagagcttcgaaacaggggacttgatcccgctctagggtggaatggtatagttgctcagcgacactatgggaaccaacaagtgaatcaagctcctcaagtacaatccatgtcaatgtaaaaattcaagattgtgattctttatttgtttgatttgaggttgtggtgtgttagtaaaaaccagattctgttcatgtttgaagttgtatccttaaaactcaaccatattgttggctgtgttagttgtttgaactatgtttttacaaccccaattcgagttagattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-5640B/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38376" stop="30903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38076" g_stop="37876" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37875" i_stop="37448" i_length="428">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37447" g_stop="37376" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="273" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37375" i_stop="37266" i_length="110">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37265" g_stop="37053" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="486" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37052" i_stop="31458" i_length="5595">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31457" g_stop="31199" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="745" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-M3961" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M3961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38076" e_stop="37876"/>
          <exon e_start="37447" e_stop="37376"/>
          <exon e_start="37265" e_stop="37053"/>
          <exon e_start="31457" e_stop="31199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATGGTAAATTAAGTTTATTACTGTCATTGTTAAGTGTCCTATTTGTGTGGGATGAGTTAGTTGGTCTCTTGTTAAATGTTTTAGGGGAATCTGAGTTAGCTTTTGAGGTTGAGTGAGACTGAATGTTCATTTATCTTTCATGGTATCAAAGATAGACTCAAATCAATTCTTGGTTTACTCGATGTTTGGCCTTTATGTTATGTTGTTCACACTTTAGATGTCCAGTCCTGGTGGCGTGGGGGAATATTGGTCAATCATCACCTCTTGAGCTAGTTTTTAAAATTGATTTAGGCCCAAAAATTCATTGTTTTATCATGGTACCAGAGTTAACTTTGTTGTGTGGGGATATTGGAATCCCAACATCTTCACATTTGTTTGACTTAAAATCCTTGATCCGCTTCTAAAAATTACATTCTTGTTTGTTTGTACAGCTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGAGTAAGTTTCCCAGTCGACCCATCTTACTTGTCGGTATACAGAAGTTAAAACTCTTTGAATAAACCAATACTAAAGTTTGATATTTTTTGTGTGTTTGGTGATTAATGCAGCATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAGGTATGTCATGTCACGCTTGGTTACAATTAATATTCTACTACCTGTCTCGTTCATCTAAAAACTTAAACTAATAGAATGACGATGAGACTCTTTAAGCCACGAATATCTTAACATTGTTACTGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGATGGAGATTAAGGAAGAAGAGAAGAAGAAGTGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTATAATGAATCTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTAACTAACTAATGGAAATATAACTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACACCCCCCCTCAAGTTGGAGGTGTAGCAAGCAGATCCAACTTGCTTAAGATTGCTGAATGCTTCACTCCAGTGAGTGCTTTGGTTAGAATGTCAGCAAATTGTTCACCAGTTCCAATATGATGCAATGAGATTAGTCCTTCTTGAAGCTTAGCTCTCACAAAATGGCAATCGACTTCAATATGCTTAGTTCTTTCATGGAATACAGGATTCTTGGCAATTTGTAATGCTGATTGGCTATCACAGAAAACAGGAAAAGGACTAGCACATGGCACAGTTAGCTCTTCAAACAATCTGCTTAACCATAGCAATTCCCCTACTACTTTCCTAATAGACCTATATTCAGCTTCAGCTGAAGATAGAGATATAGTTTCTTGTTTCTTCGATTTCTAGCTGACAGGACTTGATCCCAACAACACAATATAACCAGTAACAGACTTCCTTGAGTCAGGACAGGATGCCCAGTCTGAGTCACAAAAGGCTTGGACCTGGTAATCATTAGTAGAAGACATGAGTAAACCCAAGGTTGGATCCTTTTTAAGGTACCTAAGTAGATGATATGCAGCCTGCAAAAGAGGTTCTCTAGGCTCTTGCATAAACTGACTCAGATGTTGTACTCCATATGCAATATCTAATCTTGTATTGGTGAGAAAATTTAACTTTCCAATCAACTTTCTATATGACTTAGGATTCTCCAAAAGTTTCCCTTCATTGGCTTTGAGCTTGATGGTAGAATCAAGAGGAGAAGCAAGACTAGAGTATGTAGTGCAGTTATACTCTTTGAGAAGATCAAGCACAAATTTTCTCTGGGAGATAAGCATTCCAGCTTCTGTATATAGTATTTCCAGGCCCAAAAAATAGTGCAGCTTTCCCAAATCCTTGATTTTGAATTGGTTATGAAGATAGTTCTTTAACTGATCAATTTCTTCAGCATCATTTGCAGTAAGTAGAATATCATCTACATATACAGCTATAAACACAGTAGAAGAACCTTGTTTTCTATAGAACAAAAAGTAGTCATTCAAGGAGTTGTTGTATCCCCTAGACTTTAAGGCATCAGACAACTTAGCACACCATTGTCTGCTGGCCTGTTTTAATCCATATAGGGACTTGTTAAGCTTACAAACCATGCCTTTAGTTGTAACATCCAATCCCTGTGGAATATCCATATATACTTCTTCATGCAGCTCTCCATGAAGAAAAGCATTATTAACATCTAACTGGTATATATTCCAGTGCTTCTTTACTGCAGTGGCTATCAAAACTCTCACAGTTGTCATTTTGATGACTGGAGAGAAAGTTTCTATATAATCTACTCCATAATGCTGAGTGTAACCCTTTACAACTAGCCTTGCTTTGTACCTTTCTATACTCCCATCAGCCTTATGTTTTACCTTGTAAACTCATCTACATCCAATAGCCTTTTTACCAGTAGGAAGTGGCATAAGTTCCCAAGTATCATTGTCATGTAATGCAGTCAATTCTTGTGTCATTGCATCTTGCCAGGCAGGATTCATTGCAGCCTCATTAAATGATGATGGTTCACAATCATGTGACACACTCAATATAAGTGATTGATTGTCAGGATACAAGGATGTAGAAGCTATATGATGGTGATGTGAAAAAGAGGCATGTAAAGAGGTCATATAGTCTTTAAGGTAAACTGGAGGTTTATGAGTTCTAGTAGATTTTCTGATGGGAGGATCATATTCTGAGGATGTGAGGTTTGGTGAAGGAGAAGTAGTTAAAATGGGATCACATTGTTCAGGTTCTGGAGAGGTGATACCAATATTATCATTGTCAAAAAAACGTTATCAAATGTAGAACTTGAAGAAGAATTGTTGATAGGAGAATTGATCATACTAGAAAAAGGAAAAACTGTTTCATGGAACACAACATCTCTAGAAATATGTATCTTCTTACTGCTCAAACTTAACACCTTATAACCTTTAACTCCAAAAGGATATCCTAGGAATACATGAGGTGTAGCTCTAGGTTCAAATTTAGTTCTTTGATGTTTAGGTGTAGTAGGAAAACAAAGACAGCCAAAACTTTTCATGTGAGAGTATTGAGGTTCTTGATTATACATTATGGAATAAGGACACTTATTGTGAAGATATGCAGAAGGGAGTCTATTAATTATATATGTGGCTGTAAGTATGCATTCTCCCCAATACTTAGTAGGTAACTTGGAATGGAAAAGAAGAGCTCTAGCTGTTTCTAGTAGATATTTATGCTTTCTCTCTACCACACCATTTTGTTGTGGTGTATAAGGACAAGATTTCTGATGTAATATTCCTTTGGATTGAAAATAAAGGATAGATTCTTGATTCACAAACTCAAGACCATTATCTGATCTTATTTTTTGAATATTTGTCTTAAACTGATTTTCTACCATATTAACAAAGGATTTCACAATGTGTAAAGCATTGCTTTTACAACTCAACAAGTGTGTCCAAGTAGTTCTACTAAAGTCATCAACTAAGGTAATGAAGTATTTAAAATTGTCATGAGTGGGTAAATGATAAGGACCCCATAGGTCTATATGCAGAAGTTCAAAAATTCTTGATGTATTATGAGTCTTAGGTGGAAAAGAAAGCCTAGTTTGTCTGGCCATAGGGCAAATATTGCATGTAAAAGGTTGTTTAGATGAAAAAATCACAGGAATGGATGTAATCCCTTTCATCTTTATAAAAGGCACATGCCTAAGTCTGTAATGCCATAACAAATCATTACAAGAATCATGAGATAAAAGAGGTACAGAATCAGAAAGTACATTATTAGTGTCACTAGGAATTGTGTTCATTACAGTTGATCTAACATTCTGAAAATTGAACAAAGGATTGCAAGAATGATTGATGGTACTACAAGAATGAGAGAAGCATTGACATTGAGAGCCTATCTTATTGTTGTGAGAAGAACAAGACATTGAAGATGAGACTTGTGAAATGAATGGACTGTCTTTTTTCTTTTTTAAACAATCTGAGCAAAGAAAGTATAATCCATCTTGTTCTCTACCAATCTCCAGAGGCCTCTTCATTGAAGGGCCCTGCAAGGTACAAGATGAGTTAGAGAATGATGTAGTACAATTGAGATGTAGAGACAAGGAACTAATAGAAATCAAATTGTATTTAAAAGAAGGGATAAAAAGAACTCTGAACGGTGTGATCATGTCATTTATTCTAACATCTCCAACTTTAGTCACCTTAACTTTGTATCCATTTGGCAATTTAACTAACATAGGATATGGTAAGTTAGTGACATGTGAAAGATGGTTGATATTAAAGGTCATATGATGTGTAGCTCCTGAATCCAGTATCCATAAATCAGTCCTTGATTTGAGACAACCACACGACAGCTTATCAAAATCAATAGATGAGTTGCAAGCTATCATACCTGCAAAGTTTGCAGCTCCACAAGTTACTTGTTCCTCAGAATCAACATCTTCAGGTTGTCCTAATTGAATGTGTTGCAACAGATTAATAAGTTGATCATATTGTTCATTGGTGAGATTAGCACTACAGGCTGTATGAGCATCAACTTTTCCATTTGGTGATTCTGCAAAAACATTAGCTACCACCATTCTTTTACCTCTAGCATACCTACTGCTTGTATTGTAATTGGTTTGTACCCTTTGATTTTGATTAACACCTTGACCATTAGATGAGTTATTTTGATTGGGATAGCCATGTAACTTGTAACATTTATCAATAATATGCCCTGATCTCTTGCAATGCTCACAAAAAGGTCTAGGCTTATTGTTTGCAGGATAATTGCTTGGTGCATAATTTGTTCTAAATCTTCCTCCTGTCGAGTTTGATGAACTAGCATTGGCAGAACTTGATGGATTAGATGAACCACCACGTATGGATGAATTCATTGAACTTCCTTCAGCAAACATTTGACTATGTGGCTTAAATTCCCTTTGTTTCTCTTCTTGTACAAGTAATGCAAAGGCTTGAGCCATAGATGGTAGTGGATTCATCATCAGAATATTACCTCTAATAACAGTATAGACTTCATTAAGCCCCATTAAAAATTGAATCAATCTTCGATCTTGTTCAGCCTTGTGCATAATTTCTTTACCTCCACAGCTACAGGCACAACTACACTGGTTTTTGATACTCAGATTACTCAACTCCTCCCAGAGCTTCTTCATCCTAGTGTAGTATACAGTAACATCAAGAACTCCCTGACTCAGATCATTGATATCCCTTTGAATTTGAAACAATTTGGCACCATTCGTTTGATCATATCGATCTTCTAACTCTTTCCATAGTTCTACTGCATCAGACACATACTCTACACTGTCTGCAATGTCTTTGCTAAGAGAGTTTAGGATCCAAGATATTACCATGTTATCACATCTCTCCCACTGACAATATTGTGGAGATGTTGAAGAAGGGCGTTTGAACTCTCCAGTAATGAATCCTAACTTGTTTTTCACAGATAAAGATCTCATTACGCCTCGTCGCCATGATCGATAACCAATTCCTTCAAAAGCTACTGGAACTAGGGTCAAACTTGGATTATCAGATGTATGTATGTAGAGAGGGTTACTAATATCGATTGTGTTCCCTCCTGTTCCTCCTGTTCCTGATATGGAAGCTTGGCCAGAAACTTCAACCATAATGAATTCAATTCACAGGAACCAAATAATAGAATGCTGAAGAAAATCAACAAGAAGAAGGATTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTCGATTTCTTCGACCTTCAGATGAGTGCAGAAATTGACAAGAAGATGAATTTCGATTTTTCAGAGATGATAAGAACAGTGATCTACACCTGCTTTGATACCATGTTAAACAAAAGAACAGCACATGCTTAGAGGATCTCCATTGAAGGAGATTAAGGAAGAAGAGAAGAAGAAGCGAGAAAGAAGAGATAGAACTCAACTCTTCTGTGATCTGAATTGATAAGAGTTGTGGAAAACACAATACAAAGAAGAAGATTACAATGAATTTGTAGCAGCCATTTATATAGCTAACTAACAGAGTATTAACAACTAACCAACTTCTGACTAACTAATGGAAGCTAATAACTAACTAATGGAAATATAACTAACTAATTGAAAAGCTGTAACTAATAACTAACTAGTTGTTTACATAACATCAACACTAATATCAACAGTTACAATAAATGTTGTGCAGGGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATAAACAATGCC</genome_strand>
        <mrna_strand>ATACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA..............................................................................................................CATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0kOsnx/sgn_marker_seqs" ref_id="SGN-M7117" ref_strand="+" ref_description="SGN-M7117 C2_At1g79820 [cosii_markers]">
      <seq>ttttctaagatttctctccgtcccttttgcattaacacgttttccttttcactttttcttaattaattccttctaaaacttcactaccaatatgcaatagctagccactccattttctgcctcacaaaacgttttttttcaggagatctgggatttgggcacgttggcgtatatgattgggatttttcttacattaccatagatcagatcacacaatatgagaggtggtggtcttgcagatgcttactccatgtacaagcgtgcatcaactaaagaccagttcactgattatgaagatagagaagaaaatctagatcgtgctgaaaatggtgtgtggaaagaaattggaaacccctcatggaagcggccattgccacatatactggtggcaattatttcatcactcttgtttggctaccatcttggggtggttaatgacactctagaaagcatgtctttggaccttgacttcagtggcagcactttggctgaaggtctagttgtgagtacatgtttgggaggtgctcttttgggctctatattcagtggttggatagcagatggggttggtcgtcggagaggctttcaactgtgtgctctaccaatgataataggtgcttctatgagtgctgcaaccagtactcttggagttatgcttcttggaagggtatttgttggaataaggatgggccttggccctgctgttgctgctctctatgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-5640B/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="46656" stop="43946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46312" g_stop="46239" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="0.784"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46238" i_stop="46149" i_length="90">
            <donor d_prob="0.974" d_score="0.74"/>
            <acceptor a_prob="0.844" a_score="0.68"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46148" g_stop="45956" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="314" r_length="192" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45955" i_stop="45517" i_length="439">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45516" g_stop="45405" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="426" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45404" i_stop="45282" i_length="123">
            <donor d_prob="0.655" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45281" g_stop="45214" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="494" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45213" i_stop="44880" i_length="334">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.179" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44879" g_stop="44747" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="627" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44746" i_stop="44342" i_length="405">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44341" g_stop="44246" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="723" r_length="96" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-M7117" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46312" e_stop="46239"/>
          <exon e_start="46148" e_stop="45956"/>
          <exon e_start="45516" e_stop="45405"/>
          <exon e_start="45281" e_stop="45214"/>
          <exon e_start="44879" e_stop="44747"/>
          <exon e_start="44341" e_stop="44246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAATTAATTTCTTTCTAAAACTTCACTACCAATATGCAATAGCTAGTGCCTCACAAAACGTTTCAGGAGGTAATTAACAAGTGTATTATATGTTAATGGCACATAATTAAAGAATGAAATGCAAAAGATTAGATTTTTTATTTATTTTTTTGATTGAAGTATGGAATTTTGCCTTGATATCAGATCTGGCATTTGGGCAGGTTGGCGTATATGATTGGGATTTTTGTTACAGTACCATAGATCAGATCACACAATATGAGAGGTGGTGGTCTTGCAGATGCTTACTCCATGTACAAGCGTGCATCAACTAAAGACCAGTTCACTGATTATGAAGATAGAGAAGAAAATCTAGGTACCCCTTACACTGTTTTCTTCCGGATGGATCTAAGATTTAGAAGCATTGTCTACCAATGCAGTATATTCTAGTACAATTTTTTAAGATATTGTACGAGCAGAAAGGAACATGTTAATTTTGCTGCAAATTCATCTGGGGTTAAAGGGGTGTGCATGAGAATGGTTTTTTTTCTTTCTAATTTTAAATAATGCCTAGATCTATAATCTATTTCTCTATGTTGTTCCAAATTATGAAATCATCAAGTTTCAATTTTTATATCTTTTTGCCAAGAAATAAAAATTTGCCAACTTGGTTGAATGATGTCATCCATTTTCCAATTAATAGTATAATACTCTTCTAGTGTACCATTAGCTTAGAGACAACAATAGGACATAACATAAAAGGATATAATTTTGTGTAAATTGACTTTTGATTCTTCTTCCTTGTGTCTATTTAGATCGTGCCGAAAATGGTGTGTGGAAAGAAATTGGAAACCCCTCATGGAAGCGGCCGTTGCCACATATACTGGTGGCAATTATTTCATCACTCTTGTTTGGCTACCATCTTGGGTATGACTGAACTTTCAAATTTGGTTTCTTGCATAAAGCCTACCTTTTTAGTTGGTTAAACATTGACCTTGTTGACCATTTTCTATTTTTATTTTTAAAACTACTTTGGTTTGGTTTATTCAGGGTGGTTAATGACACTCTAGAAAGCATGTCTTTGGACCTTGACTTCAGTGGCAGCACCTTGGCGGAAGGTATTTTACGCCATTTACCTTAAAGATTCCCCTGCGCCCCAGCTCCTGCCACCTGAACTTCTGTGTGTCCGCCTCTCTAGGAGGATTCTTAATTTTTAGTTGGTGGGGGGAATCCACTACTCATTTGTGACAGAGCATGCTACATTTCAATAACTATAGATGTTATTTTTTATTTTATTTTGTTATATTAATATATACAGTGATCGAGTCCAAGGCAGTGATGTCAATCAAACCTATTGTCTAATACTTGCTTATTCAAAGAAGATTCTCTTCATCTAGTTGCTTAGTTCAATGCCTACAGGGTCCTTCTGATATGATAATTCTATTTTCAAAGGTCTAGTTGTGAGTACATGTTTGGGAGGTGCTCTTTTGGGCTCTATATTCAGTGGTTGGATAGCAGATGGGGTTGGTCGTCGGAGAGGCTTTCAACTGTGTGCTCTACCAATGATTATAGGTGCTTCTATGAGGTAAAACCTTAATAAACTTTTTACTAGCTATATTACGGCCTTTTCAACTTTGAATGCGACCATGAACATTTACTTTGTAATACCGTCTAAATATTGTGTAGTCTTGAATCCTCTTCTGTTCATTGTATAACCTGCCTTGGATGAATGGATGGTTTAAAAGAAAGTGTATAATCCCTTAGGGGATGCTTAGTCTTGCTATATTTTGCATTGGCAAACTCTCCTGCAGACTTATTCTTAAGAGTCTTGTAAAGGTCATTTATATAGCCAGGGGTGTTTGAGTTTTCTTTTCATGTTTAAGTTATTGAATTATATAACCTGGAGCGAATACGGAAATTTTTAATTCAAATCTATTTCTGTACGAGTTTCCGGAAATTAGCTGAAGGTTCTTCAACTTCATAAATGTAGTGCCGCAACCAGTACTCTTGGAGTTATGCTTCTTGGAAGGTTATTTGTTGGAATAGGGATGGGCCTTGGCCCTGCTGTTGCTGCTCTCTATGTTGC</genome_strand>
        <mrna_strand>TTTCTTAATTAATT-CCTTCTAAAACTTCACTACCAATATGCAATAGCTA--G-C-CACTCCA-TTTTCTGCCT..........................................................................................CACAAAACGTT-TTTTTTCAGGAGATCTGGGATTTGGGCACGTTGGCGTATATGATTGGGATTTTTCTTACATTACCATAGATCAGATCACACAATATGAGAGGTGGTGGTCTTGCAGATGCTTACTCCATGTACAAGCGTGCATCAACTAAAGACCAGTTCACTGATTATGAAGATAGAGAAGAAAATCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTGCTGAAAATGGTGTGTGGAAAGAAATTGGAAACCCCTCATGGAAGCGGCCATTGCCACATATACTGGTGGCAATTATTTCATCACTCTTGTTTGGCTACCATCTTGG...........................................................................................................................GGTGGTTAATGACACTCTAGAAAGCATGTCTTTGGACCTTGACTTCAGTGGCAGCACTTTGGCTGAAG..............................................................................................................................................................................................................................................................................................................................................GTCTAGTTGTGAGTACATGTTTGGGAGGTGCTCTTTTGGGCTCTATATTCAGTGGTTGGATAGCAGATGGGGTTGGTCGTCGGAGAGGCTTTCAACTGTGTGCTCTACCAATGATAATAGGTGCTTCTATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCAACCAGTACTCTTGGAGTTATGCTTCTTGGAAGGGTATTTGTTGGAATAAGGATGGGCCTTGGCCCTGCTGTTGCTGCTCTCTATGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0kOsnx/sgn_marker_seqs" ref_id="SGN-M6852-2" ref_strand="+" ref_description="SGN-M6852-2 C2_At1g52220-2 [cosii_markers]">
      <seq>tggctgcgtgttcttcactgcccaatctgctcccaatagcttcaactttctatatcctccatcactgcttaattgttgtttccatttgacaaaatacaaagttcaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcacgggcagacaaacccttttcggaactgttaacacttctacacttttcgtccccaccacaagacaaggtcacctggccatcacagcaaaggctactagtgaaagttctgaatccttatcctccccaagtgttgttaaatcagtaaagaatatttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggctgcttcaaattttgtggcggcaatcgacagcctgcctctcattccaggtgtgtttgaatttatcgggatattgttttctacttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttagggcagtgatctgaaaatattaggatgatacagttcatgttgtacttctgtatccaagcatcaccaaaatgctgaatcattttacagatgaaatgatatcttcagaaatgagccaacattttttttcctcatatactgcttcttacatctataatttgttaatatgccttttgccaactggaagtagagtgctttcaccatccctctctcaatttcctatggttttctactgtctgccatagtcagactgatccaacgaaaactctttagcaagtttgagttcacgtatataaaccaaaagtgggtaccctaatttgtttatgatttgatatttagtatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-5640B/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66915" stop="63508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66615" g_stop="66396" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="315" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="402" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64769" g_stop="64707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="465" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="503" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64195" g_stop="63798" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="901" r_length="398" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-M6852-2" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6852-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66615" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="63798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTT</genome_strand>
        <mrna_strand>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0kOsnx/sgn_marker_seqs" ref_id="SGN-M6852-3" ref_strand="+" ref_description="SGN-M6852-3 C2_At1g52220-3 [cosii_markers]">
      <seq>ttccatttaacaaaaaacgaagttgaaaatttgaaattctcagatggcttcaatcgtagtagctaagctgcatcctcctccgcccgccatcactggtagacaaacccttttcggaactgttcacacttctactcttttcgtccccaccaaaagacaaggtcacctggccatcacagcaaaggctaccagtgaaagttctgaatccttatcctccccaagtgtagttaagtcagtaaagaatgtttgggacaaccctgaagaccggattgctgtaattgggttgggaattgctgctattgttggtttctgggcttcttcgaattttgtcgcggcaatcgacagcctgcctctcattccaggtgtgtttgaattcatcgggatattgttttcttcttggttcgtatacagatacctcttattcaagcccaacaggcaagaattgtttcaagggatcaataaatcaatatcagatatcttggggcagtgatctgaaaataataggatgatacaattcatgttgtacttctgtatccaagcattaccaaaatgctgaatcattttatagatgaaatgatatcttcagaaatgagcaacattttttttcctcaaaaaaaagaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-5640B/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66827" stop="63715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66514" g_stop="66396" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="149" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65674" g_stop="65580" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="244" r_length="95" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363">
            <donor d_prob="0.204" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65216" g_stop="65130" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="331" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360">
            <donor d_prob="0.964" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64769" g_stop="64707" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="394" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167">
            <donor d_prob="0.935" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64539" g_stop="64502" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="432" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64195" g_stop="64020" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="607" r_length="175" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="608" polyA_stop="625"/>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-M6852-3" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6852-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66514" e_stop="66396"/>
          <exon e_start="65674" e_stop="65580"/>
          <exon e_start="65216" e_stop="65130"/>
          <exon e_start="64769" e_stop="64707"/>
          <exon e_start="64539" e_stop="64502"/>
          <exon e_start="64195" e_stop="64020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCAGTAAGTTTTCTTCTGCAACATTCACAATAACAGTTTCAGTCTGCAATTAGTCTTATTGAGGTATAATTTTGAGGTATTGTGTTGCAATTTCATAGGTGAAAATCCGATCAGTAGTAATACCGGGCTTGTAACATCGATGATGCTACTTTTCACTAGTTTTTTTTTTTAAATGACTGTAGTGTCTGGGCCTCGATTAAATTACCTGTTGTTTTTGCTACATTTCACTAGATAGTTTAAAGACTAGTATGGATGTTTCTCGTTATGTAGTGTGTTTAGTCCATAGAGAGGACTTAACAAGAAGAGTTGGAGATACTCAATGAACATTCATCATTTACTAGCAAAAGAAATGTTTCTATTCCGTATTTGTTACTATAGATAGAAAGTAAATGAGCCTGTGAGCGAGGCTATCCTGAATTTGTTATTGACTTTTGGCTACTATGGAATGGAGGTGGATGAACCTGTAAATAGAACATTCATGAAGGTTCGTTTGATATGCGGTTACAGAACAATTAATACTGCTAAACCAGGTAAAATTGACTTTGAAAGCTTGTTGAAGATGCCAAGTCATATTCAGATTCTGGCTTCTGATAAATCACCTTGACAGTTATGAAATTTCTGCTGCTCAATTTATGTCTCGTCTCCTCCTTGGTTTGTTTTTTTCATATATAATAAGGGGTACTGATATTTTACAGATTCCTTCTAATTGTTACTGTTTCTGTAGCAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATTGTGAGTGCCCCTTCTTTCCCTTTTCGGCACTCATATCTTGATTCCAAGAGTTCATTTTAGTGACACTTATACGAGAAACAGAATTAACCCACTGCTCATTTCTCTTGGCAAAAGACACCACGTGGAGTTGTAGATTAATGTTCAGTCTGTTTCATTCATTGTTTGCACTTTTGCATAGTTGCATTTTCTGTTGATTGTACAAGGGCAAAGATTCCATGCTACACTCCCCTTTGGCCTTCAGCCCCAGACAAAAAAAAAAGAAAAAAGTCTGGAAGTTGACACTGTAAAGCAACATAGATCTTCTGACCTTACTTTTTTATGATTATATTGGTTGAATTGCATCTTGTTTGATTGTTGAAACAGTGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCGGTAAACTTTGTTGCTTTATTATATATAGATGCTGGAGTTATTATATGTCCATACCACATTGAGAAGTCTACGATATGGCCTCTTTGGTGGTTGACAATATCTTTATGACCATTTATTGACAATACCTACCTATCCAAGAACATATTGAGCTCCAATAACCCTTGCTGGAAACATGACTAGTGCAACATATGACCTCATACTAGCAGTCTTACATCATTTTTGGCCCATAATGACCGTTATTTTTTCCAGTGTATTAGCGACAGGATGCAGTGTTGCTTTAAATTATACTGTTGAGAGATTCAAAGATTTTTTTGTTTTTAAGAATTGTGAATGTACTGATGTTCTTTAAGTTTTGAATAGGCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACTGTAAGTATTGAAGTACACTTATTTCCTCCTGTATTTATTGTGGAACAATAGAAAGAATTCTGTCTCCTTTATTGTTTCAGGTGTCAAATAGTGAGTTTAATATGTTGTTATTCTGATTCCTCGGCAATCATTGATTTAATGCATTTCCTGTTCTCTCTCTTTTGTAGTGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAGGTAAAAACTCTGTCAAAGGTTGCCTTCTCTTATCTAGTGTCTCCAATCTTACCCCCTCCCGTCTTCTGCTTCATGTCTTTAGCTGTTATATCTGTTTTGCACATATAATAAAGTGAAAAATACCACTAACTTGCTTTATTCACATGCCCACATTTTGTTTCTCAAGCTTCTACAAATCCTTCATGCAAATGTTTGAATTGTTGGTCCAACCATACACTTTGAATTGTTTGCTTCACTTCAGTCATTGTTGATGACTTCATACCACTGCGCTCCACCTGACATGTTCTTTTATTTTTCCAATAACAGGCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTC</genome_strand>
        <mrna_strand>TTGAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACTGGTAGACAAACCCTTTTCGGAACTGTTCACACTTCTACTCTTTTCGTCCCCACCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACCAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTAGTTAAGTCAGTAAAGAATGTT...........................................................................................................................................................................................................................................................................................................................................................................TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTTCTTCGAATTTTGTCGCG........................................................................................................................................................................................................................................................................................................................................................................GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTCATCGGGATATTGTTTTCTTCT.......................................................................................................................................................................TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG..................................................................................................................................................................................................................................................................................................................GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTGGGGCAGTGATCTGAAAATAATAGGATGATACAATTCATGTTGTACTTCTGTATCCAAGCATTACCAAAATGCTGAATCATTTTATAGATGAAATGATATCTTCAGAAATGAG-CAACATTTTTTTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0kOsnx/sgn_marker_seqs" ref_id="SGN-M574-F" ref_strand="+" ref_description="SGN-M574-F TG406-F [rflp_markers_forward]">
      <seq>gcccaccaatagtgtcaagggcctagctggaagctccattgctggaactaagctgaatgttaaatcatctcgcctcaatgtgaagcaatctaaatccaggtaaggtactggatggccgatgtctcagattttagtagcccgtttgatcaatatctgcttatttcaattttaggaagtcttattgttttagcaatttgtgtttgacgaatcaacttgcaaagcaatttgtcaatattagaaaaaacagttgtgattgactgattaacgctccaaaacttcaatttctgaaaaacaacttctattactgctcacaactacttatttattcctaaaatgtttagccaagcaacttggactttagtttggttagtggtgaagttaaagattgaattagtttttttcttaataaccatggtgtgtgttcgactacctgttacctcccaccaatatcggtttatctgaggatgttaagaaatgttattatatacatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-5640B/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="+" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="75337" stop="76430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75637" g_stop="76130" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="+" ref_id="SGN-M574-F" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M574-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75637" e_stop="76130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGA</genome_strand>
        <mrna_strand>GCCCACCAATAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCAGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGATTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0kOsnx/sgn_marker_seqs" ref_id="SGN-M574-R" ref_strand="+" ref_description="SGN-M574-R TG406-R [rflp_markers_reverse]">
      <seq>ctcctatagggagacagcttgcatgcctgcagaattttagtttacctcacgaggactgccatcagaattcacggaattctggaagctcgtcctcaaatgtacatattcagatggatctcacccatataggattcaactaagccattccttttgtaagtagggaaaatttagtagacctatcgagtctgtggcacttcttttgaagtgatttactgtgtacaagatgtcaccttgttgaaaaaacaaagtgaattttttgattttttgcaaatagtactatgttattttgtatggcctttggtctttagattttattggaaaggaagtatgtaagagagatttgttgtccttatcagtctaccttttctttcatgttcttttcagagtattgtttacaatatcacaaaggcatgatgaaccacgaagatgaaaaaaaatatcataagctacaaacttcgaaagcaatgctttgaactttccagaagatttatcttgttgtaacagaggtctgaggtaagctttaatgtacacttacaagctgttatatagatgatacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-5640B/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="77591" stop="76449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77275" g_stop="76749" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="559" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-M574-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M574-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77275" e_stop="76749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTAGTTTACCTCACGAGGACTGCCATCAGAATTCACGGAATTCTGGAAGCTCGTCCTCAAATGTACATATTCAGATGGATCTCACCCATATAGGATTCAACTAAGCCATTCCTTTTGTAAGTAGGGAAAATTTAGTAGACCTATCGAGTCTGTGGCACTTCTTTTGAAGTGATTTACTGTGTACAAGATGTCACCTTGTTGAAAAAACAAAGTGAATTTTTTGATTTTTTGCAAATAGTACTATGTTATTTTGTATGGCCTTTGGTCTTTAGATTTTATTGGAAAGGAAGTATGTAAGAGAGATTTGTTGTCCTTATCAGTCTACCTTTTCTTTCATGTTCTTTTCAGAGTATTGTTTACAATATCACAAAGGCATGATGAACCACGAAGATGAAAAAAAATATCATAAGCTACAAACTTCGAAAGCAATGCTTTGAACTTTCCAGAAGATTTATCTTGTTGTAACAGAGGTCTGAGGTAAGCTTTAATGTACACTTACAAGCTGTTATATAGATGATACATC</genome_strand>
        <mrna_strand>AATTTTAGTTTACCTCACGAGGACTGCCATCAGAATTCACGGAATTCTGGAAGCTCGTCCTCAAATGTACATATTCAGATGGATCTCACCCATATAGGATTCAACTAAGCCATTCCTTTTGTAAGTAGGGAAAATTTAGTAGACCTATCGAGTCTGTGGCACTTCTTTTGAAGTGATTTACTGTGTACAAGATGTCACCTTGTTGAAAAAACAAAGTGAATTTTTTGATTTTTTGCAAATAGTACTATGTTATTTTGTATGGCCTTTGGTCTTTAGATTTTATTGGAAAGGAAGTATGTAAGAGAGATTTGTTGTCCTTATCAGTCTACCTTTTCTTTCATGTTCTTTTCAGAGTATTGTTTACAATATCACAAAGGCATGATGAACCACGAAGATGAAAAAAAATATCATAAGCTACAAACTTCGAAAGCAATGCTTTGAACTTTCCAGAAGATTTATCTTGTTGTAACAGAGGTCTGAGGTAAGCTTTAATGTACACTTACAAGCTGTTATATAGATGATACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-0kOsnx/sgn_marker_seqs" ref_id="SGN-M1786" ref_strand="+" ref_description="SGN-M1786 T1135 [cos_markers]">
      <seq>gaggtcgctagggtttctgcaactgtatcgtaatgggtaagggaacaggaagcttcggtaagaggaggaacaagacccacacactatgtgtgaggtgtggaagacggagcttccatctccagaagagccgttgctctgcttgtgcttaccctgctgcccgtaaaaggacatacaactggagtgtgaaggctatccgcagaaagacaactggaactggccgcatgaggtatcttcgtaacgtccctcgctggttcaagaccaatttcagagaaggtactgaagcagctccaaggaagaagggagtagcttctgcttgaggccttcgagacaggtacttgagaggctattagtggtagcttcatttcgatatttcaagtgctagagcaagttaaagtttgggaccttctatcttagttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0081D06-5640B/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0081D06.1" temp_strand="-" temp_description="C12HBa0081D06.1  AC218144.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0081D06*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="84234" stop="81714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83934" g_stop="83900" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83651" g_stop="83516" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="171" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83401" g_stop="83300" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="273" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82160" g_stop="82014" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="420" r_length="147" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0081D06.1" gen_strand="-" ref_id="SGN-M1786" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0081D06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83934" e_stop="83900"/>
          <exon e_start="83651" e_stop="83516"/>
          <exon e_start="83401" e_stop="83300"/>
          <exon e_start="82160" e_stop="82014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATGGTAAGTGAAGCTAACTCTTTCATCCTTTTTCCTGTTAACGTATACCTTTTCGTTTTCCTCATCGAATTGGTAGAAATCACAAATCACGAAATGGTTCGAAAACTAAAATTGAATGGAACTACAGTGAATATTGAAGAATGACCTGCACAGATAAAAAAAATGGTTCTGATTATAGAAAAGTAGTGCATATGTTTTTGTAAGTTCGCTAAAGGTGATCTGTAATTGAACGTGTGGATTTTACTATATAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACATGTAATACTTATAATCCTAACACTTGTAATATTATACATTATATCAGAATATCAATCCTCTGATAGGAGTTGTACTCTCTTTTTTTACATGCTTTTCTGAATGAATGATTTGCAGACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAGGTACACATATTATAGTGTTTCTGCATTTTAAGATTTGCTAATTTACTTTTTATTTAGGATTGAGTGTGCCTTTGGTATGGATAACATTGTTTATAGAATTTATGAAATCATTTTCGAGTGATTGCTTACTTCTAAAATGGGAAACCTTATTTCCTCTAGTTATAGACAAAAGTCATTTTACTTTACAGATATCCCATATACTTGCCTAGACAAATATTTAGATATTGTTTTCAACCTTCATTGCTAATATGACTACTACCTCTTTCTCATCTGTTAAGTTGTTCAACTGGGCACAATGTTTAAGAAGTTTAAAAAATAATGTGTTTTTAAAGATAGAAAGTTGTCGATTCCTTTCCTTTTTAGAAAGAAAGTGTCACATAACCAGGGGTTGATGAGAGTAATAAATGCTATTGATGTACATTGTCTTCCACTTTGTATGAGTGAGGTACCATGCAGTTATAGTACACGCTGTGACTACCCTTTTACCTTGACTGATGTTGCATATTGCACCCTTGGTCTATAGTAAATTGAGGGGTTGTTGGGTAGTTGGGTAGAGTTATGCAGTTATTCCAATGCAATAATTAGTGGTGAAGGAATTTATGTGTTATTTTATATAGGTATTTATTTATGTCTTTTAATTACACCTTTTATCTAGCATATTATAGTACTTAGATTCCTTCATAACTTGTGCATATATTTTTTATCTGGTTTTCTAAAATGGAAACCAGACACAATATTAGTTTTTAACATGAATACCTTACCTTCTAACCAGTTACCAAACATACTATTACTTGCACATATCTGTATATCTAACCTCCAAACCAGCTATCAAGCAAGTCCAAGTGTTTATAATTAGTTCCAAGAAACCAGAACTGAATACCTAAAATAGTTTTAGTAAATTAATTTCAAGATAAAGCTGTTTTCACTCAGTATTTCCCCCCTAACCAATGTACCTATTGGTGTTTTAAGTTGACTACATATTAGTTGAGCTTAAAAGATGCACACCTATAATTCCGTGTGATTGTTCCTTTGTTTAGCTTGTCTGAGTTTGTGTAGTAGACATTGCCAATTGGTCATCAAGAATATCTGGTAATAACAAGTATGAGATAATAATAAAATTCGTACGCTTGTTCGTCCAGGTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTA</genome_strand>
        <mrna_strand>GAGGTCGCTAGGGTTTCTGCAACTGTATCGTAATG........................................................................................................................................................................................................................................................GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT..................................................................................................................ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCTGGTTCAAGACCAATTTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGGTACTTGAGAGGCTATTAGTGGTAGCTTCATTTCGATATTTCAAGTGCTAGAGCAAGTTAAAGTTTGGGACCTTCTATCTTAGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12753" PGL_stop="19700"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12753" e_stop="13050"/>
            <exon e_start="13852" e_stop="13965"/>
            <exon e_start="14072" e_stop="14225"/>
            <exon e_start="15071" e_stop="15207"/>
            <exon e_start="16989" e_stop="17089"/>
            <exon e_start="17889" e_stop="18006"/>
            <exon e_start="18278" e_stop="18444"/>
            <exon e_start="18999" e_stop="19354"/>
            <exon e_start="19683" e_stop="19700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.230" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.361" e_score="1.000"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12753" e_stop="13050" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13051" i_stop="13851" i_length="801"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13852" e_stop="13965" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.964">
            <gDNA_intron_boundary i_start="13966" i_stop="14071" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14072" e_stop="14225" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14226" i_stop="15070" i_length="845"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15071" e_stop="15207" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.993">
            <gDNA_intron_boundary i_start="15208" i_stop="16988" i_length="1781"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16989" e_stop="17089" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.984">
            <gDNA_intron_boundary i_start="17090" i_stop="17888" i_length="799"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17889" e_stop="18006" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.230" acc_prob="0.857">
            <gDNA_intron_boundary i_start="18007" i_stop="18277" i_length="271"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18278" e_stop="18444" e_length="167"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.967">
            <gDNA_intron_boundary i_start="18445" i_stop="18998" i_length="554"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18999" e_stop="19354" e_length="356"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.361">
            <gDNA_intron_boundary i_start="19355" i_stop="19682" i_length="328"/>
          </intron>
          <exon e_serial="9" e_score="0.722">
            <gDNA_exon_boundary e_start="19683" e_stop="19700" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12753" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15207"/>
              <exon start="16989" stop="17089"/>
              <exon start="17889" stop="18006"/>
              <exon start="18278" stop="18444"/>
              <exon start="18999" stop="19354"/>
              <exon start="19683" stop="19700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12773" stop="13050"/>
              <exon start="13852" stop="13965"/>
              <exon start="14072" stop="14225"/>
              <exon start="15071" stop="15207"/>
              <exon start="16989" stop="17074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7116-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTGTCTCAAATTTGTCTGCGTGGTCAAGTCAGTGCTGAACTGAAAAGATTGCTCACCGGGGTTCCGGTACGCAATCGCCGCCGGCGACCACCAATTTCTTCATCGCATATCCCACTATAGTTAAAATTCATTGAATTATCTAGTACGGCCGAGATATGGACAGACAAAACCTAGCTTCATCCTCCGCTCCCCGTGGTGGTGCGACTGTCCATCCTCCCCCACAACACGATGCTTGGATCAATACTTACCGGAATTTGCATCCTCAATGGCAATCTCTTCTTCCTCCACCGCAACAG : TCAGCCATTCCAATATCAATATCCAGAGTTAATCAGGTAGATGCTGGAAGACTGGACATTGAAATGTCAGCCATGCTAAAAGAGCAGTTGGTTAAGGTCTTTTCTTTGATGAAG : CCAGGAATGTTATTTCAATATGAACCAGAACTTGATGCTTTTCTTGAGTTTCTAATCTGGCGATTTTCTATCTGGGTTGATAAGCCTACTCCTGGTAATGCTCTCATGAATCTGAGATACAGAGATGAACGTGCAAGTGAGATTAGAGGAAAAG : TGAGGACTGGATTAGAGGGACCAGGACTTACTGTTGCTCAAAAGATATGGTACTGTGTTGCAACAGTTGGTGGTCAATATATATGGGCTCGTCTACAATCATTTTCTGCTTTTCGGAGATGGGGTGACTCTGAGCAG : AGGTCCTTGGCACGTGGAGTGTGGTTGTTAATGCAACGGATGGAGGGTATCTATAAAGCAGCATCTTTTAGCAATTTACTTCTCTTTCTTTACACAGGAAG : GTTCAGGAATCTCATTGAAAGAGCTTTAAGAGCTAGACTTGTTTATGGGAGCCCAAATATGAACAGAGCTGTGAGCTTTGAGTACATGAATCGTCAGTTGGTCTGGAATGAATTCTCG : GAACTGCTGCTCTTGCTTCTTCCCCTTCTCAATTCAGCATCTGTCAAGAGTTTCCTTCGTCCATTCTCAAAGGACAAATCTTCAGATTCTTCAGTAGATGAAACTTTATGCCCCATCTGCCAGGGAACCCCATCAATTCCATTTGTAGCTATCCCTTGTCAGCATAG : GTACTGTTACTACTGTCTTCAAACAAGGTGCTCTGCATCTTCATCGTTTCGTTGCCCCAGATGTGGTGAACCAGTTGCTGCTATGCAACGGCATGGTGGTTTAGTCAGCAACATTCCTCAGAAACAATGATTGTTCTGCAAAGTGATTGAAATGATAAAAAAAAGGGAAGCTAAGTTAAACTATAGATCAAAAGTTGCTCAAAAGACAACTTGACAATGAAACTAGGTATCTAGATTCCTTAATAAAGCTTATTGTTCTGCTTTATTGAGTGCTTTAATTTTTTAATAGTGTGGTTGTCCCTTTTCCTGTATTTTACATCTCATTTGTTTATTTAATTGAAAGATAATTTTCTCAA : ACTAAAAAAAATAGGATC</gDNA_template>
            <first_frame> L  C  L  K  F  V  C  V  V  K  S  V  L  N  *  K  D  C  S  P  G  F  R  Y  A  I  A  A  G  D  H  Q  F  L  H  R  I  S  H  Y  S  *  N  S  L  N  Y  L  V  R  P  R  Y  G  Q  T  K  P  S  F  I  L  R  S  P  W  W  C  D  C  P  S  S  P  T  T  R  C  L  D  Q  Y  L  P  E  F  A  S  S  M  A  I  S  S  S  S  T  A  T   : V  S  H  S  N  I  N  I  Q  S  *  S  G  R  C  W  K  T  G  H  *  N  V  S  H  A  K  R  A  V  G  *  G  L  F  F  D  E   : A  R  N  V  I  S  I  *  T  R  T  *  C  F  S  *  V  S  N  L  A  I  F  Y  L  G  *  *  A  Y  S  W  *  C  S  H  E  S  E  I  Q  R  *  T  C  K  *  D  *  R  K  S :   E  D  W  I  R  G  T  R  T  Y  C  C  S  K  D  M  V  L  C  C  N  S  W  W  S  I  Y  M  G  S  S  T  I  I  F  C  F  S  E  M  G  *  L  *  A   : E  V  L  G  T  W  S  V  V  V  N  A  T  D  G  G  Y  L  *  S  S  I  F  *  Q  F  T  S  L  S  L  H  R  K  :  V  Q  E  S  H  *  K  S  F  K  S  *  T  C  L  W  E  P  K  Y  E  Q  S  C  E  L  *  V  H  E  S  S  V  G  L  E  *  I  L   : G  T  A  A  L  A  S  S  P  S  Q  F  S  I  C  Q  E  F  P  S  S  I  L  K  G  Q  I  F  R  F  F  S  R  *  N  F  M  P  H  L  P  G  N  P  I  N  S  I  C  S  Y  P  L  S  A  *  :  V  L  L  L  L  S  S  N  K  V  L  C  I  F  I  V  S  L  P  Q  M  W  *  T  S  C  C  Y  A  T  A  W  W  F  S  Q  Q  H  S  S  E  T  M  I  V  L  Q  S  D  *  N  D  K  K  K  G  S  *  V  K  L  *  I  K  S  C  S  K  D  N  L  T  M  K  L  G  I  *  I  P  *  *  S  L  L  F  C  F  I  E  C  F  N  F  L  I  V  W  L  S  L  F  L  Y  F  T  S  H  L  F  I  *  L  K  D  N  F  L  K :   L  K  K  I  G   </first_frame>
            <second_frame>  C  V  S  N  L  S  A  W  S  S  Q  C  *  T  E  K  I  A  H  R  G  S  G  T  Q  S  P  P  A  T  T  N  F  F  I  A  Y  P  T  I  V  K  I  H  *  I  I  *  Y  G  R  D  M  D  R  Q  N  L  A  S  S  S  A  P  R  G  G  A  T  V  H  P  P  P  Q  H  D  A  W  I  N  T  Y  R  N  L  H  P  Q  W  Q  S  L  L  P  P  P  Q  Q  :  S  A  I  P  I  S  I  S  R  V  N  Q  V  D  A  G  R  L  D  I  E  M  S  A  M  L  K  E  Q  L  V  K  V  F  S  L  M  K  :  P  G  M  L  F  Q  Y  E  P  E  L  D  A  F  L  E  F  L  I  W  R  F  S  I  W  V  D  K  P  T  P  G  N  A  L  M  N  L  R  Y  R  D  E  R  A  S  E  I  R  G  K   : V  R  T  G  L  E  G  P  G  L  T  V  A  Q  K  I  W  Y  C  V  A  T  V  G  G  Q  Y  I  W  A  R  L  Q  S  F  S  A  F  R  R  W  G  D  S  E  Q  :  R  S  L  A  R  G  V  W  L  L  M  Q  R  M  E  G  I  Y  K  A  A  S  F  S  N  L  L  L  F  L  Y  T  G  R :   F  R  N  L  I  E  R  A  L  R  A  R  L  V  Y  G  S  P  N  M  N  R  A  V  S  F  E  Y  M  N  R  Q  L  V  W  N  E  F  S  :  E  L  L  L  L  L  L  P  L  L  N  S  A  S  V  K  S  F  L  R  P  F  S  K  D  K  S  S  D  S  S  V  D  E  T  L  C  P  I  C  Q  G  T  P  S  I  P  F  V  A  I  P  C  Q  H  R :   Y  C  Y  Y  C  L  Q  T  R  C  S  A  S  S  S  F  R  C  P  R  C  G  E  P  V  A  A  M  Q  R  H  G  G  L  V  S  N  I  P  Q  K  Q  *  L  F  C  K  V  I  E  M  I  K  K  R  E  A  K  L  N  Y  R  S  K  V  A  Q  K  T  T  *  Q  *  N  *  V  S  R  F  L  N  K  A  Y  C  S  A  L  L  S  A  L  I  F  *  *  C  G  C  P  F  S  C  I  L  H  L  I  C  L  F  N  *  K  I  I  F  S   : N  *  K  K  *  D  </second_frame>
            <third_frame>   V  S  Q  I  C  L  R  G  Q  V  S  A  E  L  K  R  L  L  T  G  V  P  V  R  N  R  R  R  R  P  P  I  S  S  S  H  I  P  L  *  L  K  F  I  E  L  S  S  T  A  E  I  W  T  D  K  T  *  L  H  P  P  L  P  V  V  V  R  L  S  I  L  P  H  N  T  M  L  G  S  I  L  T  G  I  C  I  L  N  G  N  L  F  F  L  H  R  N  S :   Q  P  F  Q  Y  Q  Y  P  E  L  I  R  *  M  L  E  D  W  T  L  K  C  Q  P  C  *  K  S  S  W  L  R  S  F  L  *  *  S :   Q  E  C  Y  F  N  M  N  Q  N  L  M  L  F  L  S  F  *  S  G  D  F  L  S  G  L  I  S  L  L  L  V  M  L  S  *  I  *  D  T  E  M  N  V  Q  V  R  L  E  E  K  :  *  G  L  D  *  R  D  Q  D  L  L  L  L  K  R  Y  G  T  V  L  Q  Q  L  V  V  N  I  Y  G  L  V  Y  N  H  F  L  L  F  G  D  G  V  T  L  S  R :   G  P  W  H  V  E  C  G  C  *  C  N  G  W  R  V  S  I  K  Q  H  L  L  A  I  Y  F  S  F  F  T  Q  E   : G  S  G  I  S  L  K  E  L  *  E  L  D  L  F  M  G  A  Q  I  *  T  E  L  *  A  L  S  T  *  I  V  S  W  S  G  M  N  S  R :   N  C  C  S  C  F  F  P  F  S  I  Q  H  L  S  R  V  S  F  V  H  S  Q  R  T  N  L  Q  I  L  Q  *  M  K  L  Y  A  P  S  A  R  E  P  H  Q  F  H  L  *  L  S  L  V  S  I   : G  T  V  T  T  V  F  K  Q  G  A  L  H  L  H  R  F  V  A  P  D  V  V  N  Q  L  L  L  C  N  G  M  V  V  *  S  A  T  F  L  R  N  N  D  C  S  A  K  *  L  K  *  *  K  K  G  K  L  S  *  T  I  D  Q  K  L  L  K  R  Q  L  D  N  E  T  R  Y  L  D  S  L  I  K  L  I  V  L  L  Y  *  V  L  *  F  F  N  S  V  V  V  P  F  P  V  F  Y  I  S  F  V  Y  L  I  E  R  *  F  S  Q  :  T  K  K  N  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12898" stop="13050"/>
                    <exon start="13852" stop="13965"/>
                    <exon start="14072" stop="14225"/>
                    <exon start="15071" stop="15207"/>
                    <exon start="16989" stop="17089"/>
                    <exon start="17889" stop="18006"/>
                    <exon start="18278" stop="18444"/>
                    <exon start="18999" stop="19128"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGRDMDRQNLASSSAPRGGATVHPPPQHDAWINTYRNLHPQWQSLLPPPQQSAIPISISRVNQVDAGRLDIEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERASEIRGKVRTGLEGPGLTVAQKIWYCVATVGGQYIWARLQSFSAFRRWGDSEQRSLARGVWLLMQRMEGIYKAASFSNLLLFLYTGRFRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSELLLLLLPLLNSASVKSFLRPFSKDKSSDSSVDETLCPICQGTPSIPFVAIPCQHRYCYYCLQTRCSASSSFRCPRCGEPVAAMQRHGGLVSNIPQKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="38076" PGL_stop="31199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38076" e_stop="37876"/>
            <exon e_start="37447" e_stop="37376"/>
            <exon e_start="37265" e_stop="37053"/>
            <exon e_start="31457" e_stop="31199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.894" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.610" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38076" e_stop="37876" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.894" acc_prob="0.993">
            <gDNA_intron_boundary i_start="37875" i_stop="37448" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37447" e_stop="37376" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.610" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37375" i_stop="37266" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37265" e_stop="37053" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37052" i_stop="31458" i_length="5595"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="31457" e_stop="31199" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38076" stop="37876"/>
              <exon start="37447" stop="37376"/>
              <exon start="37265" stop="37053"/>
              <exon start="31457" stop="31199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3961" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACTATTTGGATAACAATGGGAAGAGTTGAAGCAAACAATGAAGGAGAAACATCTCAGGCAGAGAGTGGTACTGAACCAGCTGCCTCACAGCCTCAACAGTTCCAAGGAGTACAAAGTGTGTATCAGTCACCATCACACTTAACAATTGGAGCTCCTTGGAGTACTGGCTTATTTGATTGTCATCTGGACCAAACTAATG : CTGTCATGACGGCGTTCTTACCTTGTGTAACATTTGGACAAATAGCAGAAGTCCTTGATGCAGGACAAATGA : CATGCCCTTTGGGGACTTTCATATACATGCTGATGATGCCTGCTGTCTGCTCTCAGTGGATCATGGGCTCAAAATATAGAACCCAATTGAGACAAAGATATAATCTAGTGGAAGCTCCTTATTCAGACATGATTTCCCATATGTTCTGTCCATGTTGCTCTCTTTGTCAAGAATTCAGAGAGCTTCGAAACAGGGGACTTGATCCCGCTCTAG : GGTGGAATGGTATAGTTGCTCAGCGACACTATGGGAACCAACAAGTGAATCAAGCTCCTCAAGTACAATCCATGTCAATGTAAAAATTCAAGATTGTGATTCTTTATTTGTTTGATTTGAGGTTGTGGTGTGTTAGTAAAAACCAGATTCTGTTCATGTTTGAAGTTGTATCCTTAAAACTCAACCATATTGTTGGCTGTGTTAGTTGTTTGAACTATGTTTTTACAACCCCAATTCGAGTTAGATTATAAACAATGCC</gDNA_template>
            <first_frame> I  L  F  G  *  Q  W  E  E  L  K  Q  T  M  K  E  K  H  L  R  Q  R  V  V  L  N  Q  L  P  H  S  L  N  S  S  K  E  Y  K  V  C  I  S  H  H  H  T  *  Q  L  E  L  L  G  V  L  A  Y  L  I  V  I  W  T  K  L  M  :  L  S  *  R  R  S  Y  L  V  *  H  L  D  K  *  Q  K  S  L  M  Q  D  K  *  :  H  A  L  W  G  L  S  Y  T  C  *  *  C  L  L  S  A  L  S  G  S  W  A  Q  N  I  E  P  N  *  D  K  D  I  I  *  W  K  L  L  I  Q  T  *  F  P  I  C  S  V  H  V  A  L  F  V  K  N  S  E  S  F  E  T  G  D  L  I  P  L  *  :  G  G  M  V  *  L  L  S  D  T  M  G  T  N  K  *  I  K  L  L  K  Y  N  P  C  Q  C  K  N  S  R  L  *  F  F  I  C  L  I  *  G  C  G  V  L  V  K  T  R  F  C  S  C  L  K  L  Y  P  *  N  S  T  I  L  L  A  V  L  V  V  *  T  M  F  L  Q  P  Q  F  E  L  D  Y  K  Q  C  </first_frame>
            <second_frame>  Y  Y  L  D  N  N  G  K  S  *  S  K  Q  *  R  R  N  I  S  G  R  E  W  Y  *  T  S  C  L  T  A  S  T  V  P  R  S  T  K  C  V  S  V  T  I  T  L  N  N  W  S  S  L  E  Y  W  L  I  *  L  S  S  G  P  N  *  C :   C  H  D  G  V  L  T  L  C  N  I  W  T  N  S  R  S  P  *  C  R  T  N  D :   M  P  F  G  D  F  H  I  H  A  D  D  A  C  C  L  L  S  V  D  H  G  L  K  I  *  N  P  I  E  T  K  I  *  S  S  G  S  S  L  F  R  H  D  F  P  Y  V  L  S  M  L  L  S  L  S  R  I  Q  R  A  S  K  Q  G  T  *  S  R  S  R :   V  E  W  Y  S  C  S  A  T  L  W  E  P  T  S  E  S  S  S  S  S  T  I  H  V  N  V  K  I  Q  D  C  D  S  L  F  V  *  F  E  V  V  V  C  *  *  K  P  D  S  V  H  V  *  S  C  I  L  K  T  Q  P  Y  C  W  L  C  *  L  F  E  L  C  F  Y  N  P  N  S  S  *  I  I  N  N  A </second_frame>
            <third_frame>   T  I  W  I  T  M  G  R  V  E  A  N  N  E  G  E  T  S  Q  A  E  S  G  T  E  P  A  A  S  Q  P  Q  Q  F  Q  G  V  Q  S  V  Y  Q  S  P  S  H  L  T  I  G  A  P  W  S  T  G  L  F  D  C  H  L  D  Q  T  N   : A  V  M  T  A  F  L  P  C  V  T  F  G  Q  I  A  E  V  L  D  A  G  Q  M   : T  C  P  L  G  T  F  I  Y  M  L  M  M  P  A  V  C  S  Q  W  I  M  G  S  K  Y  R  T  Q  L  R  Q  R  Y  N  L  V  E  A  P  Y  S  D  M  I  S  H  M  F  C  P  C  C  S  L  C  Q  E  F  R  E  L  R  N  R  G  L  D  P  A  L   : G  W  N  G  I  V  A  Q  R  H  Y  G  N  Q  Q  V  N  Q  A  P  Q  V  Q  S  M  S  M  *  K  F  K  I  V  I  L  Y  L  F  D  L  R  L  W  C  V  S  K  N  Q  I  L  F  M  F  E  V  V  S  L  K  L  N  H  I  V  G  C  V  S  C  L  N  Y  V  F  T  T  P  I  R  V  R  L  *  T  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38074" stop="37876"/>
                    <exon start="37447" stop="37376"/>
                    <exon start="37265" stop="37053"/>
                    <exon start="31457" stop="31375"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIWITMGRVEANNEGETSQAESGTEPAASQPQQFQGVQSVYQSPSHLTIGAPWSTGLFDCHLDQTNAVMTAFLPCVTFGQIAEVLDAGQMTCPLGTFIYMLMMPAVCSQWIMGSKYRTQLRQRYNLVEAPYSDMISHMFCPCCSLCQEFRELRNRGLDPALGWNGIVAQRHYGNQQVNQAPQVQSMSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="46312" PGL_stop="44246"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46312" e_stop="46239"/>
            <exon e_start="46148" e_stop="45956"/>
            <exon e_start="45516" e_stop="45405"/>
            <exon e_start="45281" e_stop="45214"/>
            <exon e_start="44879" e_stop="44747"/>
            <exon e_start="44341" e_stop="44246"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.844" e_score="0.784"/>
          <exon-intron don_prob="0.799" acc_prob="0.999" e_score="0.907"/>
          <exon-intron don_prob="0.655" acc_prob="1.000" e_score="0.982"/>
          <exon-intron don_prob="0.000" acc_prob="0.179" e_score="0.971"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.992"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.784">
            <gDNA_exon_boundary e_start="46312" e_stop="46239" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.844">
            <gDNA_intron_boundary i_start="46238" i_stop="46149" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="46148" e_stop="45956" e_length="193"/>
          </exon>
          <intron i_serial="2" don_prob="0.799" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45955" i_stop="45517" i_length="439"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="45516" e_stop="45405" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.655" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45404" i_stop="45282" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="45281" e_stop="45214" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.179">
            <gDNA_intron_boundary i_start="45213" i_stop="44880" i_length="334"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="44879" e_stop="44747" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44746" i_stop="44342" i_length="405"/>
          </intron>
          <exon e_serial="6" e_score="0.969">
            <gDNA_exon_boundary e_start="44341" e_stop="44246" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46312" stop="46239"/>
              <exon start="46148" stop="45956"/>
              <exon start="45516" stop="45405"/>
              <exon start="45281" stop="45214"/>
              <exon start="44879" stop="44747"/>
              <exon start="44341" stop="44246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTAATTAATTTCTTTCTAAAACTTCACTACCAATATGCAATAGCTAGTGCCTCACAAAACGTTTCAGGAG : TATGGAATTTTGCCTTGATATCAGATCTGGCATTTGGGCAGGTTGGCGTATATGATTGGGATTTTTGTTACAGTACCATAGATCAGATCACACAATATGAGAGGTGGTGGTCTTGCAGATGCTTACTCCATGTACAAGCGTGCATCAACTAAAGACCAGTTCACTGATTATGAAGATAGAGAAGAAAATCTAG : ATCGTGCCGAAAATGGTGTGTGGAAAGAAATTGGAAACCCCTCATGGAAGCGGCCGTTGCCACATATACTGGTGGCAATTATTTCATCACTCTTGTTTGGCTACCATCTTGG : GGTGGTTAATGACACTCTAGAAAGCATGTCTTTGGACCTTGACTTCAGTGGCAGCACCTTGGCGGAAG : GTCTAGTTGTGAGTACATGTTTGGGAGGTGCTCTTTTGGGCTCTATATTCAGTGGTTGGATAGCAGATGGGGTTGGTCGTCGGAGAGGCTTTCAACTGTGTGCTCTACCAATGATTATAGGTGCTTCTATGAG : TGCCGCAACCAGTACTCTTGGAGTTATGCTTCTTGGAAGGTTATTTGTTGGAATAGGGATGGGCCTTGGCCCTGCTGTTGCTGCTCTCTATGTTGC</gDNA_template>
            <first_frame> F  F  N  *  F  L  S  K  T  S  L  P  I  C  N  S  *  C  L  T  K  R  F  R  S :   M  E  F  C  L  D  I  R  S  G  I  W  A  G  W  R  I  *  L  G  F  L  L  Q  Y  H  R  S  D  H  T  I  *  E  V  V  V  L  Q  M  L  T  P  C  T  S  V  H  Q  L  K  T  S  S  L  I  M  K  I  E  K  K  I  *  :  I  V  P  K  M  V  C  G  K  K  L  E  T  P  H  G  S  G  R  C  H  I  Y  W  W  Q  L  F  H  H  S  C  L  A  T  I  L   : G  W  L  M  T  L  *  K  A  C  L  W  T  L  T  S  V  A  A  P  W  R  K  :  V  *  L  *  V  H  V  W  E  V  L  F  W  A  L  Y  S  V  V  G  *  Q  M  G  L  V  V  G  E  A  F  N  C  V  L  Y  Q  *  L  *  V  L  L  *   : V  P  Q  P  V  L  L  E  L  C  F  L  E  G  Y  L  L  E  *  G  W  A  L  A  L  L  L  L  L  S  M  L  </first_frame>
            <second_frame>  F  L  I  N  F  F  L  K  L  H  Y  Q  Y  A  I  A  S  A  S  Q  N  V  S  G   : V  W  N  F  A  L  I  S  D  L  A  F  G  Q  V  G  V  Y  D  W  D  F  C  Y  S  T  I  D  Q  I  T  Q  Y  E  R  W  W  S  C  R  C  L  L  H  V  Q  A  C  I  N  *  R  P  V  H  *  L  *  R  *  R  R  K  S  R :   S  C  R  K  W  C  V  E  R  N  W  K  P  L  M  E  A  A  V  A  T  Y  T  G  G  N  Y  F  I  T  L  V  W  L  P  S  W  :  G  G  *  *  H  S  R  K  H  V  F  G  P  *  L  Q  W  Q  H  L  G  G  R :   S  S  C  E  Y  M  F  G  R  C  S  F  G  L  Y  I  Q  W  L  D  S  R  W  G  W  S  S  E  R  L  S  T  V  C  S  T  N  D  Y  R  C  F  Y  E  :  C  R  N  Q  Y  S  W  S  Y  A  S  W  K  V  I  C  W  N  R  D  G  P  W  P  C  C  C  C  S  L  C  C </second_frame>
            <third_frame>   F  *  L  I  S  F  *  N  F  T  T  N  M  Q  *  L  V  P  H  K  T  F  Q  E  :  Y  G  I  L  P  *  Y  Q  I  W  H  L  G  R  L  A  Y  M  I  G  I  F  V  T  V  P  *  I  R  S  H  N  M  R  G  G  G  L  A  D  A  Y  S  M  Y  K  R  A  S  T  K  D  Q  F  T  D  Y  E  D  R  E  E  N  L   : D  R  A  E  N  G  V  W  K  E  I  G  N  P  S  W  K  R  P  L  P  H  I  L  V  A  I  I  S  S  L  L  F  G  Y  H  L  G :   V  V  N  D  T  L  E  S  M  S  L  D  L  D  F  S  G  S  T  L  A  E   : G  L  V  V  S  T  C  L  G  G  A  L  L  G  S  I  F  S  G  W  I  A  D  G  V  G  R  R  R  G  F  Q  L  C  A  L  P  M  I  I  G  A  S  M  S :   A  A  T  S  T  L  G  V  M  L  L  G  R  L  F  V  G  I  G  M  G  L  G  P  A  V  A  A  L  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46067" stop="45956"/>
                    <exon start="45516" stop="45405"/>
                    <exon start="45281" stop="45214"/>
                    <exon start="44879" stop="44747"/>
                    <exon start="44341" stop="44248"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRSHNMRGGGLADAYSMYKRASTKDQFTDYEDREENLDRAENGVWKEIGNPSWKRPLPHILVAIISSLLFGYHLGVVNDTLESMSLDLDFSGSTLAEGLVVSTCLGGALLGSIFSGWIADGVGRRRGFQLCALPMIIGASMSAATSTLGVMLLGRLFVGIGMGLGPAVAALYV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="66615" PGL_stop="63798"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66615" e_stop="66396"/>
            <exon e_start="65674" e_stop="65580"/>
            <exon e_start="65216" e_stop="65130"/>
            <exon e_start="64769" e_stop="64707"/>
            <exon e_start="64539" e_stop="64502"/>
            <exon e_start="64195" e_stop="63798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.204" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66615" e_stop="66396" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="66395" i_stop="65675" i_length="721"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65674" e_stop="65580" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.204" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65579" i_stop="65217" i_length="363"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65216" e_stop="65130" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65129" i_stop="64770" i_length="360"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64769" e_stop="64707" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="0.966">
            <gDNA_intron_boundary i_start="64706" i_stop="64540" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64539" e_stop="64502" e_length="38"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="64501" i_stop="64196" i_length="306"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="64195" e_stop="63798" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66615" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="63798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6852-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66514" stop="66396"/>
              <exon start="65674" stop="65580"/>
              <exon start="65216" stop="65130"/>
              <exon start="64769" stop="64707"/>
              <exon start="64539" stop="64502"/>
              <exon start="64195" stop="64020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6852-3" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCTGCGTGTTCTTCACTGCCCAATCTGCTCCCAATAGCTTCAACTTTCTATATCCTCCATCACTGCTTAATTGTTGTTTCCATTTGACAAAATACAAAGTTCAAATTCTCAGATGGCTTCAATCGTAGTAGCTAAGCTGCATCCTCCTCCGCCCGCCATCACGGGCAGACAAACCCTTTTCGGAACTGTTAACACTTCTACACTTTTCGTCCCCACCA : CAAGACAAGGTCACCTGGCCATCACAGCAAAGGCTACTAGTGAAAGTTCTGAATCCTTATCCTCCCCAAGTGTTGTTAAATCAGTAAAGAATATT : TGGGACAACCCTGAAGACCGGATTGCTGTAATTGGGTTGGGAATTGCTGCTATTGTTGGTTTCTGGGCTGCTTCAAATTTTGTGGCG : GCAATCGACAGCCTGCCTCTCATTCCAGGTGTGTTTGAATTTATCGGGATATTGTTTTCTACT : TGGTTCGTATACAGATACCTCTTATTCAAGCCCAACAG : GCAAGAATTGTTTCAAGGGATCAATAAATCAATATCAGATATCTTAGGGCAGTGATCTGAAAATATTAGGATGATACAGTTCATGTTGTACTTCTGTATCCAAGCATCACCAAAATGCTGAATCATTTTACAGATGAAATGATATCTTCAGAAATGAGCCAACATTTTTTTTCCTCATATACTGCTTCTTACATCTATAATTTGTTAATATGCCTTTTGCCAACTGGAAGTAGAGTGCTTTCACCATCCCTCTCTCAATTTCCTATGGTTTTCTACTGTCTGCCATAGTCAGACTGATCCAACGAAAACTCTTTAGCAAGTTTGAGTTCACGTATATAAACCAAAAGTGGGTACCCTAATTTGTTTATGATTTGATATTTAGTATTTATTTAAAATTT</gDNA_template>
            <first_frame> W  L  R  V  L  H  C  P  I  C  S  Q  *  L  Q  L  S  I  S  S  I  T  A  *  L  L  F  P  F  D  K  I  Q  S  S  N  S  Q  M  A  S  I  V  V  A  K  L  H  P  P  P  P  A  I  T  G  R  Q  T  L  F  G  T  V  N  T  S  T  L  F  V  P  T   : T  R  Q  G  H  L  A  I  T  A  K  A  T  S  E  S  S  E  S  L  S  S  P  S  V  V  K  S  V  K  N  I  :  W  D  N  P  E  D  R  I  A  V  I  G  L  G  I  A  A  I  V  G  F  W  A  A  S  N  F  V  A  :  A  I  D  S  L  P  L  I  P  G  V  F  E  F  I  G  I  L  F  S  T  :  W  F  V  Y  R  Y  L  L  F  K  P  N  R :   Q  E  L  F  Q  G  I  N  K  S  I  S  D  I  L  G  Q  *  S  E  N  I  R  M  I  Q  F  M  L  Y  F  C  I  Q  A  S  P  K  C  *  I  I  L  Q  M  K  *  Y  L  Q  K  *  A  N  I  F  F  P  H  I  L  L  L  T  S  I  I  C  *  Y  A  F  C  Q  L  E  V  E  C  F  H  H  P  S  L  N  F  L  W  F  S  T  V  C  H  S  Q  T  D  P  T  K  T  L  *  Q  V  *  V  H  V  Y  K  P  K  V  G  T  L  I  C  L  *  F  D  I  *  Y  L  F  K  I  </first_frame>
            <second_frame>  G  C  V  F  F  T  A  Q  S  A  P  N  S  F  N  F  L  Y  P  P  S  L  L  N  C  C  F  H  L  T  K  Y  K  V  Q  I  L  R  W  L  Q  S  *  *  L  S  C  I  L  L  R  P  P  S  R  A  D  K  P  F  S  E  L  L  T  L  L  H  F  S  S  P  P  :  Q  D  K  V  T  W  P  S  Q  Q  R  L  L  V  K  V  L  N  P  Y  P  P  Q  V  L  L  N  Q  *  R  I  F :   G  T  T  L  K  T  G  L  L  *  L  G  W  E  L  L  L  L  L  V  S  G  L  L  Q  I  L  W  R :   Q  S  T  A  C  L  S  F  Q  V  C  L  N  L  S  G  Y  C  F  L  L :   G  S  Y  T  D  T  S  Y  S  S  P  T   : G  K  N  C  F  K  G  S  I  N  Q  Y  Q  I  S  *  G  S  D  L  K  I  L  G  *  Y  S  S  C  C  T  S  V  S  K  H  H  Q  N  A  E  S  F  Y  R  *  N  D  I  F  R  N  E  P  T  F  F  F  L  I  Y  C  F  L  H  L  *  F  V  N  M  P  F  A  N  W  K  *  S  A  F  T  I  P  L  S  I  S  Y  G  F  L  L  S  A  I  V  R  L  I  Q  R  K  L  F  S  K  F  E  F  T  Y  I  N  Q  K  W  V  P  *  F  V  Y  D  L  I  F  S  I  Y  L  K  F </second_frame>
            <third_frame>   A  A  C  S  S  L  P  N  L  L  P  I  A  S  T  F  Y  I  L  H  H  C  L  I  V  V  S  I  *  Q  N  T  K  F  K  F  S  D  G  F  N  R  S  S  *  A  A  S  S  S  A  R  H  H  G  Q  T  N  P  F  R  N  C  *  H  F  Y  T  F  R  P  H  H :   K  T  R  S  P  G  H  H  S  K  G  Y  *  *  K  F  *  I  L  I  L  P  K  C  C  *  I  S  K  E  Y   : L  G  Q  P  *  R  P  D  C  C  N  W  V  G  N  C  C  Y  C  W  F  L  G  C  F  K  F  C  G   : G  N  R  Q  P  A  S  H  S  R  C  V  *  I  Y  R  D  I  V  F  Y   : L  V  R  I  Q  I  P  L  I  Q  A  Q  Q  :  A  R  I  V  S  R  D  Q  *  I  N  I  R  Y  L  R  A  V  I  *  K  Y  *  D  D  T  V  H  V  V  L  L  Y  P  S  I  T  K  M  L  N  H  F  T  D  E  M  I  S  S  E  M  S  Q  H  F  F  S  S  Y  T  A  S  Y  I  Y  N  L  L  I  C  L  L  P  T  G  S  R  V  L  S  P  S  L  S  Q  F  P  M  V  F  Y  C  L  P  *  S  D  *  S  N  E  N  S  L  A  S  L  S  S  R  I  *  T  K  S  G  Y  P  N  L  F  M  I  *  Y  L  V  F  I  *  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66543" stop="66396"/>
                    <exon start="65674" stop="65580"/>
                    <exon start="65216" stop="65130"/>
                    <exon start="64769" stop="64707"/>
                    <exon start="64539" stop="64502"/>
                    <exon start="64195" stop="64141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFPFDKIQSSNSQMASIVVAKLHPPPPAITGRQTLFGTVNTSTLFVPTTRQGHLAITAKATSESSESLSSPSVVKSVKNIWDNPEDRIAVIGLGIAAIVGFWAASNFVAAIDSLPLIPGVFEFIGILFSTWFVYRYLLFKPNRQELFQGINKSISDILGQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64126" stop="63908"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDTVHVVLLYPSITKMLNHFTDEMISSEMSQHFFSSYTASYIYNLLICLLPTGSRVLSPSLSQFPMVFYCLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="75637" PGL_stop="76130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75637" e_stop="76130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="75637" e_stop="76130" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75637" stop="76130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M574-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCCACCAGTAGTGTCAAGGGCCTAGCTGGAAGCTCCATTGCTGGAACTAAGCTGAATGTTAAATCATCTCGCCTCAATGTGAAGCAATCTAAATCCAGGTAAGGTACTGGATGGCCGATGTCTCGGATTTTAGTAGCCCGTTTGATCAATATCTGCTTATTTCAATTTTAGGAAGTCTTATTGTTTTAGCAATTTGTGTTTGACGAATCAACTTGCAAAGCAATTTGTCAATATTAGAAAAAACAGTTGTGTTTGACTGATTAACGCTCCAAAACTTCAATTTCTGAAAAACAACTTCTATTACTGCTCACAACTACTTATTTATTCCTAAAATGTTTAGCCAAGCAACTTGGACTTTAGTTTGGTTAGTGGTGAAGTTAAAGATTGAATTAGTTTTTTTCTTAATAACCATGGTGTGTGTTCGACTACCTGTTACCTCCCACCAATATCGGTTTATCTGAGGATGTTAAGAAATGTTATTATATACATTTGA</gDNA_template>
            <first_frame> A  H  Q  *  C  Q  G  P  S  W  K  L  H  C  W  N  *  A  E  C  *  I  I  S  P  Q  C  E  A  I  *  I  Q  V  R  Y  W  M  A  D  V  S  D  F  S  S  P  F  D  Q  Y  L  L  I  S  I  L  G  S  L  I  V  L  A  I  C  V  *  R  I  N  L  Q  S  N  L  S  I  L  E  K  T  V  V  F  D  *  L  T  L  Q  N  F  N  F  *  K  T  T  S  I  T  A  H  N  Y  L  F  I  P  K  M  F  S  Q  A  T  W  T  L  V  W  L  V  V  K  L  K  I  E  L  V  F  F  L  I  T  M  V  C  V  R  L  P  V  T  S  H  Q  Y  R  F  I  *  G  C  *  E  M  L  L  Y  T  F   </first_frame>
            <second_frame>  P  T  S  S  V  K  G  L  A  G  S  S  I  A  G  T  K  L  N  V  K  S  S  R  L  N  V  K  Q  S  K  S  R  *  G  T  G  W  P  M  S  R  I  L  V  A  R  L  I  N  I  C  L  F  Q  F  *  E  V  L  L  F  *  Q  F  V  F  D  E  S  T  C  K  A  I  C  Q  Y  *  K  K  Q  L  C  L  T  D  *  R  S  K  T  S  I  S  E  K  Q  L  L  L  L  L  T  T  T  Y  L  F  L  K  C  L  A  K  Q  L  G  L  *  F  G  *  W  *  S  *  R  L  N  *  F  F  S  *  *  P  W  C  V  F  D  Y  L  L  P  P  T  N  I  G  L  S  E  D  V  K  K  C  Y  Y  I  H  L  </second_frame>
            <third_frame>   P  P  V  V  S  R  A  *  L  E  A  P  L  L  E  L  S  *  M  L  N  H  L  A  S  M  *  S  N  L  N  P  G  K  V  L  D  G  R  C  L  G  F  *  *  P  V  *  S  I  S  A  Y  F  N  F  R  K  S  Y  C  F  S  N  L  C  L  T  N  Q  L  A  K  Q  F  V  N  I  R  K  N  S  C  V  *  L  I  N  A  P  K  L  Q  F  L  K  N  N  F  Y  Y  C  S  Q  L  L  I  Y  S  *  N  V  *  P  S  N  L  D  F  S  L  V  S  G  E  V  K  D  *  I  S  F  F  L  N  N  H  G  V  C  S  T  T  C  Y  L  P  P  I  S  V  Y  L  R  M  L  R  N  V  I  I  Y  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0081D06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="77275" PGL_stop="76749"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77275" e_stop="76749"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77275" e_stop="76749" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77275" stop="76749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M574-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTAGTTTACCTCACGAGGACTGCCATCAGAATTCACGGAATTCTGGAAGCTCGTCCTCAAATGTACATATTCAGATGGATCTCACCCATATAGGATTCAACTAAGCCATTCCTTTTGTAAGTAGGGAAAATTTAGTAGACCTATCGAGTCTGTGGCACTTCTTTTGAAGTGATTTACTGTGTACAAGATGTCACCTTGTTGAAAAAACAAAGTGAATTTTTTGATTTTTTGCAAATAGTACTATGTTATTTTGTATGGCCTTTGGTCTTTAGATTTTATTGGAAAGGAAGTATGTAAGAGAGATTTGTTGTCCTTATCAGTCTACCTTTTCTTTCATGTTCTTTTCAGAGTATTGTTTACAATATCACAAAGGCATGATGAACCACGAAGATGAAAAAAAATATCATAAGCTACAAACTTCGAAAGCAATGCTTTGAACTTTCCAGAAGATTTATCTTGTTGTAACAGAGGTCTGAGGTAAGCTTTAATGTACACTTACAAGCTGTTATATAGATGATACATC</gDNA_template>
            <first_frame> N  F  S  L  P  H  E  D  C  H  Q  N  S  R  N  S  G  S  S  S  S  N  V  H  I  Q  M  D  L  T  H  I  G  F  N  *  A  I  P  F  V  S  R  E  N  L  V  D  L  S  S  L  W  H  F  F  *  S  D  L  L  C  T  R  C  H  L  V  E  K  T  K  *  I  F  *  F  F  A  N  S  T  M  L  F  C  M  A  F  G  L  *  I  L  L  E  R  K  Y  V  R  E  I  C  C  P  Y  Q  S  T  F  S  F  M  F  F  S  E  Y  C  L  Q  Y  H  K  G  M  M  N  H  E  D  E  K  K  Y  H  K  L  Q  T  S  K  A  M  L  *  T  F  Q  K  I  Y  L  V  V  T  E  V  *  G  K  L  *  C  T  L  T  S  C  Y  I  D  D  T   </first_frame>
            <second_frame>  I  L  V  Y  L  T  R  T  A  I  R  I  H  G  I  L  E  A  R  P  Q  M  Y  I  F  R  W  I  S  P  I  *  D  S  T  K  P  F  L  L  *  V  G  K  I  *  *  T  Y  R  V  C  G  T  S  F  E  V  I  Y  C  V  Q  D  V  T  L  L  K  K  Q  S  E  F  F  D  F  L  Q  I  V  L  C  Y  F  V  W  P  L  V  F  R  F  Y  W  K  G  S  M  *  E  R  F  V  V  L  I  S  L  P  F  L  S  C  S  F  Q  S  I  V  Y  N  I  T  K  A  *  *  T  T  K  M  K  K  N  I  I  S  Y  K  L  R  K  Q  C  F  E  L  S  R  R  F  I  L  L  *  Q  R  S  E  V  S  F  N  V  H  L  Q  A  V  I  *  M  I  H  </second_frame>
            <third_frame>   F  *  F  T  S  R  G  L  P  S  E  F  T  E  F  W  K  L  V  L  K  C  T  Y  S  D  G  S  H  P  Y  R  I  Q  L  S  H  S  F  C  K  *  G  K  F  S  R  P  I  E  S  V  A  L  L  L  K  *  F  T  V  Y  K  M  S  P  C  *  K  N  K  V  N  F  L  I  F  C  K  *  Y  Y  V  I  L  Y  G  L  W  S  L  D  F  I  G  K  E  V  C  K  R  D  L  L  S  L  S  V  Y  L  F  F  H  V  L  F  R  V  L  F  T  I  S  Q  R  H  D  E  P  R  R  *  K  K  I  S  *  A  T  N  F  E  S  N  A  L  N  F  P  E  D  L  S  C  C  N  R  G  L  R  *  A  L  M  Y  T  Y  K  L  L  Y  R  *  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0081D06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="83934" PGL_stop="82014"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83934" e_stop="83900"/>
            <exon e_start="83651" e_stop="83516"/>
            <exon e_start="83401" e_stop="83300"/>
            <exon e_start="82160" e_stop="82014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.971"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="0.990"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="83934" e_stop="83900" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83899" i_stop="83652" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83651" e_stop="83516" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83515" i_stop="83402" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="83401" e_stop="83300" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="83299" i_stop="82161" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="82160" e_stop="82014" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83934" stop="83900"/>
              <exon start="83651" stop="83516"/>
              <exon start="83401" stop="83300"/>
              <exon start="82160" stop="82014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGTCGCTAGGGTTTCTGCAACTGTAGCGTAATG : GGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACACTATGTGTGAGGTGTGGAAGACGGAGCTTCCATCTCCAGAAGAGCCGTTGCTCTGCTTGTGCTTACCCTGCTGCCCGTAAAAGGACAT : ACAACTGGAGTGTGAAGGCTATCCGCAGAAAGACAACTGGAACTGGCCGCATGAGGTATCTTCGTAACGTCCCTCGCAGGTTCAAGACCAATTTCAGAGAAG : GTACTGAAGCAGCTCCAAGGAAGAAGGGAGTAGCTTCTGCTTGAGGCCTTCGAGACAGTTACTTGAGAGGCTATTAGTGGTAGCTTCATTTTGATATTTCAAGTGTTAGAGCAAGTAAAATTTTGGGACCTTCTATCTTAGTTTTTA</gDNA_template>
            <first_frame> E  V  A  R  V  S  A  T  V  A  *  W :   V  R  E  Q  E  A  S  V  R  G  G  T  R  P  T  H  Y  V  *  G  V  E  D  G  A  S  I  S  R  R  A  V  A  L  L  V  L  T  L  L  P  V  K  G  H  :  T  T  G  V  *  R  L  S  A  E  R  Q  L  E  L  A  A  *  G  I  F  V  T  S  L  A  G  S  R  P  I  S  E  K  :  V  L  K  Q  L  Q  G  R  R  E  *  L  L  L  E  A  F  E  T  V  T  *  E  A  I  S  G  S  F  I  L  I  F  Q  V  L  E  Q  V  K  F  W  D  L  L  S  *  F  L </first_frame>
            <second_frame>  R  S  L  G  F  L  Q  L  *  R  N   : G  *  G  N  R  K  L  R  *  E  E  E  Q  D  P  H  T  M  C  E  V  W  K  T  E  L  P  S  P  E  E  P  L  L  C  L  C  L  P  C  C  P  *  K  D  I :   Q  L  E  C  E  G  Y  P  Q  K  D  N  W  N  W  P  H  E  V  S  S  *  R  P  S  Q  V  Q  D  Q  F  Q  R  R :   Y  *  S  S  S  K  E  E  G  S  S  F  C  L  R  P  S  R  Q  L  L  E  R  L  L  V  V  A  S  F  *  Y  F  K  C  *  S  K  *  N  F  G  T  F  Y  L  S  F   </second_frame>
            <third_frame>   G  R  *  G  F  C  N  C  S  V  M  :  G  K  G  T  G  S  F  G  K  R  R  N  K  T  H  T  L  C  V  R  C  G  R  R  S  F  H  L  Q  K  S  R  C  S  A  C  A  Y  P  A  A  R  K  R  T   : Y  N  W  S  V  K  A  I  R  R  K  T  T  G  T  G  R  M  R  Y  L  R  N  V  P  R  R  F  K  T  N  F  R  E   : G  T  E  A  A  P  R  K  K  G  V  A  S  A  *  G  L  R  D  S  Y  L  R  G  Y  *  W  *  L  H  F  D  I  S  S  V  R  A  S  K  I  L  G  P  S  I  L  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0081D06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83923" stop="83900"/>
                    <exon start="83651" stop="83516"/>
                    <exon start="83401" stop="83300"/>
                    <exon start="82160" stop="82117"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFCNCSVMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGVASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 63 chains have been computed
$ 
$ memory statistics:
$ 216392 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 24043 bytes was the average size of a spliced alignment
$ 13352 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1907 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 64 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-17 14:27:20
-->
