<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-07 09:15:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0073O10-5UxcG/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-Pi4Cli/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Pi4Cli/lycopersicum_combined_unigene_seqs" ref_id="SGN-U320948" ref_strand="+" ref_description="SGN-U320948        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr3:2492299-2495756 FORWARD | Aliases: None(evalue: 9e-134, score=474) genbank/nr: gi|15292697|gb|AAK92717.1| putative RNA-binding protein [Arabidopsis thaliana](evalue: 5e-132, score=475)">
      <seq>attaatttaatcatcaaaatcaaaactttttaaaagggttgaatcaatctgttattgttatcatagtgtgtaaaaaatcttgaagaaaaaagataaaatcttgaaaaaagaacagtgggaacagaaaagtaaagagggctaatatagaggaggaagaacatcgccctcggttctagttactgtgcctcctctgtagatcttattgatttgggtgattttgttaaatgggtattgttcaaaagatagattcttgatttgtgtatttgttaattttttttttatgaaaaaagtttgatgaaatcatttttcattgttggggttgttttgatccgtttagtttgattgaatctgataattattggatcagttacagattgttgtgtgtctctgaagctcttcattatacttcacagtaaaaaaggaaaatgcaagttgatcttggtaagttattcgttggtgggatttcatgggacacagacgacgagcgtctgaaggagtattttagtacttatggggaggttgtagaagctgtaattatgaaggataggactactggccgtgctcgtggtttcggttttgtggtctttgctgatcctgctgctgctgagagggtagtaaaggagaaacacaacattgatggcaggatggtagaagcaaagagggcagttccacgggatgaccagagcacgacaagtagaagcagtcctagtattcatggttctcctagtcctggtccaggacgtacaagaaagattttcgttggtggtttagcatccactgtcactgagactgcctttaagcagtattttgagcaatttggaacaatcacagatgcagtagttatgtatgatcataacactcaaaggcctaggggatttggattcatcacttatgattcagaggatgcagtggataaagtcttgctcaagtcttaccatgagctgaatgataaaatggttgaggtcaagcgcgctgttcccaaagagttatccccaggtcctagccaaagtccacttggtcggtacagctatggattaaataggatgaataacttccttgatgggtatgcacagggatactctccaaatacagttggaggatatggagtcggtatggatggtagatttagccccatcactgggggtaggagtgtctttactccatttggttctggttatggtatgggtcttaactttgaaccaggtctgagcccaggatatggtggtagtgcaaatgttaacagtagtttaagctatggacggggactgaatccatattatagctcaagcagacttggtggtggcattgggtttgacggaggaagtgggggaggaaacacttctttcttaaactcagcaaatcgcaatttatggggtgatggaggactgcaccatgggacgacctcgacaagctctagcaactttttagtatctggaagtggtggaaacattggaggaggaagctttagcaacagtggagtttggggttcatcaatttcctctcaaggcgggggaaatgtttctagcaaaaatggaaatctcggatatgtgaatggtgacagcatatatgggatggcaggaggctatggcagaaacgtcacaaaacgtggagccgctatgccatcaggatccaggggtagttatgatgggggccctttagctgatttatatggtagtggtttgggatatgatgatcacacttggcgtccttcaaattctgagcaggatgcaaccggttctcttggttatggactaggcaatggaccttctgacatgtcacctcaaagtacttcaggttatgttggtagttatggagttggcaatagacaaccaaacagaggaatggacggctaggagaatgtctcgaatcaaggctgttatagtacgcgagatctttttccgtctaagttgaatcatgaattttgaatatttccacaaattatataaaacttaagaagagttggacttccttttgtaggggacttggaaatgcctgctttttgaaggtctagagatagaactttgcaagacactttgttttaaaatgataattttttttttttttgagttatgttttagaaatttcctcttttttttcctcttcaagtaaggtgtaaaatcaaattgcagctgcagcaatacatacaaaggaaatagacagtttatttttgcacaaaatttttatattccatgtttttgctgtaaacgcgtcgaatgttatgtaatgctttctctattatttgctacgtcttctgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-5UxcG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6691" stop="13380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6991" g_stop="7411" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7412" i_stop="7763" i_length="352">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7764" g_stop="7989" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="647" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7990" i_stop="8292" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8293" g_stop="9484" g_length="1192"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="1839" r_length="1192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9485" i_stop="12664" i_length="3180">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12665" g_stop="13077" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1840" r_stop="2253" r_length="414" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2256" polyA_stop="2270"/>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-U320948" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2252</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6991" e_stop="7411"/>
          <exon e_start="7764" e_stop="7989"/>
          <exon e_start="8293" e_stop="9484"/>
          <exon e_start="12665" e_stop="13077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTTAATCATCAAAATCAAAACTTTTTAAAAGGGTTGAATCAATCTGTTATTGTTATCATAGTGTGTAAAAAATCTTGAAGAAAAAAGATAAAATCTTGAAAAAAGAACAGTGGGAACAGAAAAGTAAAGAGGGCTAATATAGAGGAGGAAGAACATCGCCCTCGGTTCTAGTTACTGTGCCTCCTCTGTAGATCTTATTGATTTGGGTGATTTTGTTAAATGGGTATTGTTCAAAAGATAGATTCTTGATTTGTGTATTTGTTAATTTTTTTTTTATGAAAAAAGTTTGATGAAATCATTTTTCATTGTTGGGGTTGTTTTGATCCGTTTAGTTTGATTGAATCTGATAATTATTGGATCAGTTACAGATTGTTGTGTGTCTCTGAAGCTCTTCATTATACTTCACAGTAAAAAAGGTATGTTCTTTACTGTTTTGGTTGTTGTTTCCTTAATCTGTATATCTTTTTTTTGTTAAGTAATGGATGTGGAATTTAATATTGTATTTTGGATTGAGTTTGAGGTGTCTCATTTTCTGTAAAATGGGTTTTTTCTTATGATGTTGTAGTAAGAATGCTTTGTCATTTCTTTTTGTTTTGAGCTGAGGTCCTTCCGAGGTAGGGGTAAGGTGCGCGTGTGGTTATGTTGTTGTTGTTGGGTTGTTCCTATGAGCAAATGTTATTTGGTTTTATTTTTTGGCTTGACGTTGCATAATGTTGAATGGAAAGTTTGGAAATGAGTATTTTATGACCATTGATTTTGGTATTGTAGGAAAATGCAAGTTGATCTTGGTAAGTTATTCGTTGGTGGGATTTCATGGGACACAGACGACGAGCGTCTGAAGGAGTATTTTAGTACTTATGGGGAGGTTGTAGAAGCTGTAATTATGAAGGATAGGACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATGGTAAGATCTTTAAGTTTGCTACATTCTTTCCAATTTGGTTTTATTTTGTTATATCACCGCTTAGCATGACAGTGTTACGAAGATATAACCAAAATGATGTAATATTTAACCAAATGCTCTGGGCCTTCATGGTATCGTTGATGTTCTCAAGCAATGCTGCTTGTTAATCTTACTTGAATAGCATTTTGTCATCAAACGTTTCTGGTCTTCTACTTTGATCTGATCTTTGAGTGCCAGAAGTGCACAACTTAAGATCTCTAGTTACTTCATTTACCCGAGATTTCTTACAATCCTCTTTTACAGGTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACTCAAAGGCCTAGGGGATTTGGATTCATCACTTATGATTCAGAGGATGCAGTGGATAAAGTCTTGCTCAAGTCTTACCATGAGCTGAATGATAAAATGGTTGAGGTCAAGCGCGCTGTTCCCAAAGAGTTATCCCCAGGTCCTAGCCAAAGTCCACTTGGTCGGTACAGCTATGGATTAAATAGGATGAATAACTTCCTTGATGGGTATGCACAGGGATACTCTCCAAATACAGTTGGAGGATATGGAGTCGGTATGGATGGTAGATTTAGCCCCATCACTGGGGGTAGGAGTGTCTTTACTCCATTTGGTTCTGGTTATGGTATGGGTCTTAACTTTGAACCAGGTCTGAGCCCAGGATATGGTGGTAGTGCAAATGTTAACAGTAGTTTAAGCTATGGACGGGGACTGAATCCATATTATAGCTCAAGCAGACTTGGTGGTGGCATTGGGTTTGACGGAGGAAGTGGGGGAGGAAACACTTCTTTCTTAAACTCAGCAAATCGCAATTTATGGGGTGATGGAGGACTGCACCATGGGACGACCTCGACAAGCTCTAGCAACTTTTTAGTATCTGGAAGTGGTGGAAACATTGGAGGAGGAAGCTTTAGCAACAGTGGAGTTTGGGGTTCATCAATTTCCTCTCAAGGCGGGGGAAATGTTTCTAGCAAAAATGGAAATCTCGGATATGTGAATGGTGACAGCATATATGGGATGGCAGGAGGCTATGGCAGAAACGTCACAAAACGTGGAGCCGCTATGCCATCAGGATCCAGGGGTAGTTATGATGGGGGCCCTTTAGCTGATTTATATGGTAGTGGTTTGGGATATGATGATCACACTTGGCGTCCTTCAAATTCTGAGCAGGATGCAACCGGTTCTCTTGGTTATGGACTAGGCAATGGACCTTCTGACATGTCACCTCAAAGTACTTCAGGTTATGTTGGTAGTTATGGAGTTGGCAATAGACAACCAAACAGAGGTAAGCTTCACATGGTTAAGCTGTTGTCTTGTTGTCATTCTTATTATCTTGGACAAGTATAACTCTCATATGATCATATTATATAAGCTTCTAGCTATCTGCATCAACGTTAAGTTCTTCGCGTAGAGTAAGATTGTGCTTAAACTTCGTCTTTACGCTCTTTACTTTCCTAGAGAAAAGAGAGTGTATGTTACTGTCAAGTTATCCCGTCATCTTTTTGGCAATTTCCATTTATTTGGCTAAATTTTACTCATTGTTGGATGTACCGTTGTTGTCTTAGAATTCTAGTTATTCCCCTCTTTCTCAATCCATGTCTGGCAGCTAAAGTTTACTAATTTTAGGACTTGGTATTTATGAAATTGGGTTCTCAACACAGTGAACTTTAACACTGTTTATTTGATAATTTGGTTGTTTTCGTTCTTTTCTGTAACTTAAGCCTATGATTTTCTTTGTCTGTCCTAATTGTAATAGCTACATGAGTATAATTTCCACGTGCATCAAAAGATCAAGACTTTCTTGGATCAGAAAATAATAGTGCATACCCTATTATTGAAGTCTAGTTGTATGTAGTCTTGATGGTCTGGAAGTGATGCTTTTGTTCTAAAGTATTTATTTTGAAAGTTTACTTTATCCAGTAAACTGTTCCTACAAAAAGAGGGCCAAATAATTAATGTGCATTAATATCTATATAAATGATATAGCATTGTGGGATCGAAGACCTAAAAGATAGTTTATTTTGTTAAGCATGGTAAAATAGAGTCAAGAAACTTGGAATCAATTTGTGCTATTTAAATATGATATATTGACCAGATCTTAAACAATTTTTTTCATGGGAAAATACAGGAATTTTTTTTGAACTTGTTTTGGTTTGATCGTAATATCTGATATTTCATGTAAGTATGTTTTATTCTGAAACTTCGCCATGATTTGTATACGTTCTCTACTCAAATGGATCGGAAGTCCTTTATATCTGTTGCACCAACTCTTGTAGGAGTAGAGACTATAATTGATGAGCTAAAACAGCCCTCACATAACAGTATAGATAGAATTGATTCATGCGTTCCATAACATCTCTTCTCACCGTCTCAATTGAAAAAATGCAATAACTAAAATTTAACCATAAGCTTGTTGGGGCCTGCTACATAAATTCTCGCTATCTAGTTTGCTCCATTTAGACTTGTCTAATGGTAGCTACCAGTAAGAGTGGTCTTCATCTCAACTAGTTCGTATCACCTATATGGATCGTATTCTATTTTTCACTAAAGTCTGCATGAACTCCAAGAGACTTTAGGTCTTTTAAGACTTCCTTCTTTGTCATTTTAGGTGTACTTTGTCCCTTTTAAACACTTTCAACCATATGTTTGACACGTACTCTTACAAACCAGTGCTTGTGGAGCTCTACGTAGAACATGACTAAACCATTTTAAACAACCTTCTCTTATCTTAATTTTGTATGATTGCAAATGTATCCTATCTCTCGCATCTCTATAACGCCCATATTGTGGATATGTTGGATGTAGAGGCCGAACATTCACTCATCATAGACCATTGCTAACTTTACAGCCGTTCTAATAGGACTTGCCTTTACTTTGATATGGTATCATTCTGTTTGCGTAATACTCTGGTTGTACTTCTCCATTTACCATTCTTTTTCAGTTTTTTTATATCTTCATCTATCATGCGATTCTCATGGAGCATTGAGCCTAGATATCCGAATTGTCCACATTTAAGCATTGCAAACTTGGTCACTTCAATTCAACTCTTTGTATGCTGGATAACTCATATTTCGTTGTGACATCGTTTGGAACTTCTCACTTCTTGTTACATGTCCTTATATACCCTCTCAAGCTCCTCCTCCTTGATGCTAACTTCTGGAAAATAAAATAAGAGAGCATTGCAACTGTTTTTCGTTCATTGGCAAATCTTTCTGTGTGAAGATCTCTGGCAGTTACAAAAAGGGAACTGTCATTTTCATTGGTCCTCGCACAAATCTTTCAACTGGACCTCTGTTTTCTTTTTACACTTCCTGTGAAGTCCTAGAAATTCTTGCTGATGCACTTGAAGCACACAATAAGGACAGTATCATTTGGAATTCCTAATGCACCAGCAGCTCCATTTATTTTTATAATGTTAATTTACTCAGCCTCTCTTTAGAGCCTAGTGAAGGCCAACATCCACTAACTTCCCCGCCTCCTATATATAATCTTATCGAGCAACACTTCTATTTCGGTTTCTTTAAGACAAATGATAGATGACCTCTACCTTTTGTTGCCACTTTTACAACTGTTCTTTGAGACGGGTCCATTAGGCCCTCATATTTCATGTCAATGTGTTCTATTGTATACTGGATGGTTGTCATTCGGGTTTTTGACATCTTTCTCTGATTCCATCAGCTCTTTCCCCCTCTACTTTCATAATTTACTGAGGGTATTAGATTGCTAAGTTCCGACTTGTTCCTCCCAAAGGGCAATTTCTCCATTTCTAAAAGCCTCATAGAAGTGTAAATAATTAGTCTGAGGCACAAAGAATCCTTTGGACCGTGACATGGTTAGGTTTTTCTGCAATTGCCAAATGGCTGCAGATTAGCGCATCCGTGCCTTTTTGTGCTTCCATTTCTGACCGAAAGGTGGTCTACTTTTTTTCTCACTGGCTTCCCGACCTTGAAAATGGTCAGGTAGCCTTCATGGTTTGTTGTCTCTTCCTCTACTGATCGTAAGCACTGAGACAGATACATGTGATGAGAGAATAAAAGGATCCTTGTGCTAGAAACGACACAGCTTTTATTTATCAGATAATATGCGGAGGCAAATTCATGTCTTAGTATTTTTCTTAAAATGAAATTGTCTTCTGTGGGTAGGCTATGGGAAATTGACAAAGCTTTTCGAAGGACAATTTCATTGCTCATGACTGTCATCACTGAAATGCCTGAAAAACTTATCATCTTGAGTTTCTTTACTTAGTTTTCATGTAGATCTTGTTTATATATTTTCGTGCCATGAGGCATGAGCTTCGACCAAATAGTTTTGTCCTTGTACTCTTAGCTTGTTTTATTACACATGATATTTTCCTTAAATTTCCTTCCCATCCTCTCTTCTCATAGATGTATGCACATTTGCAGTTCTTCGAGTTGCGATGTCAGATAATGCTATGTTTTAATCTAATGTTCTTCCATCGATGCAGGAATGGACGGCTAGGAGAATGTCTCGAATCAAGGCTGTTATAGTACGCGAGATCTTTTTCCGTCTAAGTTGAATCATGAATTTTGAATATTTCCACAAATTATATAAAACTTAAGAAGAGTTGGACTTCCTTTTGTAGGGGACTTGGAAATGCCTGCTTTTTGAAGGTCTAGAGATAGAACTTTGCAAGACACTTTGTTTTAAAATGATAA-TTTTTTTTTTTTTGAGTTATGTTTTAGAAATTTCCTCTTTTTTTTCCTCTTCAAGTAAGGTGTAAAATCAAATTGCAGCTGCAGCAATACATACAAAGGAAATAGACAGTTTATTTTTGCACAAAATTTTTATATTCCATGTTTTTGCTGTAAACGCGTCGAATGTTATGTAATGCTTTCTCTATTATTTGCTACGTCTTCT</genome_strand>
        <mrna_strand>ATTAATTTAATCATCAAAATCAAAACTTTTTAAAAGGGTTGAATCAATCTGTTATTGTTATCATAGTGTGTAAAAAATCTTGAAGAAAAAAGATAAAATCTTGAAAAAAGAACAGTGGGAACAGAAAAGTAAAGAGGGCTAATATAGAGGAGGAAGAACATCGCCCTCGGTTCTAGTTACTGTGCCTCCTCTGTAGATCTTATTGATTTGGGTGATTTTGTTAAATGGGTATTGTTCAAAAGATAGATTCTTGATTTGTGTATTTGTTAATTTTTTTTTTATGAAAAAAGTTTGATGAAATCATTTTTCATTGTTGGGGTTGTTTTGATCCGTTTAGTTTGATTGAATCTGATAATTATTGGATCAGTTACAGATTGTTGTGTGTCTCTGAAGCTCTTCATTATACTTCACAGTAAAAAAG................................................................................................................................................................................................................................................................................................................................................................GAAAATGCAAGTTGATCTTGGTAAGTTATTCGTTGGTGGGATTTCATGGGACACAGACGACGAGCGTCTGAAGGAGTATTTTAGTACTTATGGGGAGGTTGTAGAAGCTGTAATTATGAAGGATAGGACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATG...............................................................................................................................................................................................................................................................................................................GTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACTCAAAGGCCTAGGGGATTTGGATTCATCACTTATGATTCAGAGGATGCAGTGGATAAAGTCTTGCTCAAGTCTTACCATGAGCTGAATGATAAAATGGTTGAGGTCAAGCGCGCTGTTCCCAAAGAGTTATCCCCAGGTCCTAGCCAAAGTCCACTTGGTCGGTACAGCTATGGATTAAATAGGATGAATAACTTCCTTGATGGGTATGCACAGGGATACTCTCCAAATACAGTTGGAGGATATGGAGTCGGTATGGATGGTAGATTTAGCCCCATCACTGGGGGTAGGAGTGTCTTTACTCCATTTGGTTCTGGTTATGGTATGGGTCTTAACTTTGAACCAGGTCTGAGCCCAGGATATGGTGGTAGTGCAAATGTTAACAGTAGTTTAAGCTATGGACGGGGACTGAATCCATATTATAGCTCAAGCAGACTTGGTGGTGGCATTGGGTTTGACGGAGGAAGTGGGGGAGGAAACACTTCTTTCTTAAACTCAGCAAATCGCAATTTATGGGGTGATGGAGGACTGCACCATGGGACGACCTCGACAAGCTCTAGCAACTTTTTAGTATCTGGAAGTGGTGGAAACATTGGAGGAGGAAGCTTTAGCAACAGTGGAGTTTGGGGTTCATCAATTTCCTCTCAAGGCGGGGGAAATGTTTCTAGCAAAAATGGAAATCTCGGATATGTGAATGGTGACAGCATATATGGGATGGCAGGAGGCTATGGCAGAAACGTCACAAAACGTGGAGCCGCTATGCCATCAGGATCCAGGGGTAGTTATGATGGGGGCCCTTTAGCTGATTTATATGGTAGTGGTTTGGGATATGATGATCACACTTGGCGTCCTTCAAATTCTGAGCAGGATGCAACCGGTTCTCTTGGTTATGGACTAGGCAATGGACCTTCTGACATGTCACCTCAAAGTACTTCAGGTTATGTTGGTAGTTATGGAGTTGGCAATAGACAACCAAACAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGACGGCTAGGAGAATGTCTCGAATCAAGGCTGTTATAGTACGCGAGATCTTTTTCCGTCTAAGTTGAATCATGAATTTTGAATATTTCCACAAATTATATAAAACTTAAGAAGAGTTGGACTTCCTTTTGTAGGGGACTTGGAAATGCCTGCTTTTTGAAGGTCTAGAGATAGAACTTTGCAAGACACTTTGTTTTAAAATGATAATTTTTTTTTTTTTTGAGTTATGTTTTAGAAATTTCCTCTTTTTTTTCCTCTTCAAGTAAGGTGTAAAATCAAATTGCAGCTGCAGCAATACATACAAAGGAAATAGACAGTTTATTTTTGCACAAAATTTTTATATTCCATGTTTTTGCTGTAAACGCGTCGAATGTTATGTAATGCTTTCTCTATTATTTGCTACGTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Pi4Cli/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344675" ref_strand="+" ref_description="SGN-U344675        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:7482463-7484402 REVERSE | Aliases: T20K18.50, T20K18_50(evalue: 4e-84, score=165) genbank/nr: gi|15235454|ref|NP_193006.1| expressed protein [Arabidopsis thaliana] gi|7487274|pir||T06628 hypothetical protein T20K18.50 - Arabidopsis thaliana gi|4586246|emb|CAB40987.1| putative protein [Arabidopsis thaliana] gi|7267971|emb|CAB78312.1| putative protein [Arabidopsis thaliana] gi|34098853|gb|AAQ56809.1| At4g12700 [Arabidopsis thaliana](evalue: 3e-82, score=165)">
      <seq>gtataatccattttgagctaaaaggggttcataatcaagattcaagattcatgaggccttggagatttctgtgaatttcttgtggtggtagtgattggaaggagtaggaacaatggtgggtcgatcgccaagtttgctgtcccggaatggaagttttaggccagaaaatctggggcaaaatgcattggcaattatagggaatctctgtttcactatatttgttgttggagttttgatttttactataatggctgcaacttatgagcctgaagatcctttattccatccttcgacgaaaatcactaatttccttacgtctaaatctgacgccacgtttaaagctgatgacactgttatgaagactggtgaggactttattggtgcaaatcagaaagcattttctaccttcataaacctaactgatgtcgacgtttcgctgtcagctacagacagtggcactgagagtgatcctgattgtcatgggaaaactgatgaaccaattgattgtaatgatccagatgtgttcatttgttgatgagagtagctattgagaagttcaaggatatacatttttacaggtttgggaagtcagtccgtggatcgaatgatagttcgtgccacatggcttggcggtttaggcctaaggatggaaagactgctgctttttacaaggattaccgcgagtttgtggtttctaggtcggagaactgtacgcttagtgtggtgagcattggagagtatcatactggtggaaatgctcggaaaaggaagagaaagagcaaggacagaatttctggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-5UxcG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="23174" stop="25727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23474" g_stop="23528" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23529" i_stop="24681" i_length="1153">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24682" g_stop="25427" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="800" r_length="745" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-U344675" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23474" e_stop="23528"/>
          <exon e_start="24682" e_stop="25427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAATCCATTTTGAGCTAAAAGGGGTTCATAATCAAGATTCAAGATTCATGAGGTAATTAAAAAAAAAGTTTTTGAATGTATAAATTTTCCATCAATTCACCATTAACAAAACTGACCCTTCATTCAGATCTGTGAATTTTTAGCTTTATTTTGTTAAATGAAACATTTTTCAAACACCCTTTGCTTCTGTTTGTGGAGTTCTGTTAATACTTCTTAAAAAAATTGTGTCTTTGTGTTCTAGGATTTGGAGGTTTGTGTGAATTGCTTGTGGTGATAGTGATTGGAGAATGGTTGGCTTTATTTTGTCAAATGTGGCATTTTTGGAGCACCATTTGCTTCTGTTTGATGAGTTCTACTCTCATGTGTTACATTTTTTTTTAAAAAAATTGTGTCTTTGTGCTTTAGGATTTAGAGTTTTTATTTTTTATTTTTGTGAATTGCTTGTGGTGATAGTGATTGGAATTTTTGGCTTTGTTTTATCAACTATAACATTTTCTGAGCACCCTTTGCTTGCGTTTGTTGAGTTCTACTTACATATGTTACATATTTTGAAGATATTTATGTGTTTGTGTTACAGGATTTAGAGGTTTTGTGAATTTCTTGAGGTTATAGTGATTGGGATTATTGGCTTTATTTTGTCAAATGTGGCAGTTTTCGAGCACCCTTTGCTTCTGTTTGTTGAGTTCTACTCTCATATGTTAAATGTATATATTTTTATAATTGTGTCTTTGTGTTTTAGGATTTAGAGTTTTTTCTTGAATTGCTTGTGGTGATAGTGATGGAGAATGGTTGGCTTTGTTTATCAACTATAACATTTTTTGAGCGCCCTTTGCTTGCGTTTGTTGGGTTTTACTCTCATATGTGTACATATTTTAATGATTTTTGTGTTGTACGATTTAGAGGTTTTTGTGGATTTCTTGTGGGGATAGTGATTGAAATTATTGGCTTTATTTTGTCAAATGAGACATATTTCGAGCACCCTTTGCTTCTGTTTCTGGACTTCTATCTCATATGTTAAAGATTTTTATGTGTTCGTGTTTTAAGATTTAGAGATTTTTGTGAATTTCTTGTGGTGATCATAGTGATCGAAATGTTGGCATTATTTTGCTAAAGGTAACATCTTTCAAGCACCCTTTACTTCTCTCTCTGGAGTTCTGTCCTTATATGTTACATATTTTGAAGATTTTTGGGTCTTTCTGTTTCAGGCCTTGGAGATTTCTGTGAATTTCTTGTGGTGGTAGTGATTGGAAGGAGTAGGAACAATGGTGGGTCGATCGCCAAGTTTGCTGTCCCGGAATGGAAGTTTTAGGCCAGAAAATCTGGGGCAAAATACATTGGCAATTATAGGGAATCTCTGTTTCACTATATTTGTTGTTGGAGTTTTGATTTTTACTATAATGGCTGCAACTTATGAGCCTGAAGATCCTTTATTCCATCCTTCGACGAAAATCACTAATTTCCTTACGTCTAAATCTGACGCCACGTTTAAAGCTGATGACACTGTTATGAAGACTGGTGAGGACTTTATTGGTGCAAATCAGAAAGCATTTTCTACCTTCATAAACCTAACTGATGTCGACGTTTCGCTGTCAGCTACAGACAGTGGCACTGAGAGTGATCCTGATTGTCATGGGAAAACTGATGAACCAATTGATTGTAATGATCCAGATGTGTTTCATTTGTTGATGAGAGTAGCTATTGAGAAGTTCAAGGATATACATTTTTACAGATTTGGGAAGTCAGTCCGTGGATCGAATGATAGTTCGTGCCACATGGCTTGGCGGTTTAGGCCTAAGGATGGAAAGACTGCTGCTTTTTACAAGGATTACCGCGAGTTTGTGGTTTCTAGGTCGGAGAACTGTACGCTTAGTGTGGTGAGCATTGGAGAGTATCATACTGGTGGAAATGCTCGGAAAAGGAAGAGAAAGAGCAAGGACAGAATTTCTGGTAA</genome_strand>
        <mrna_strand>GTATAATCCATTTTGAGCTAAAAGGGGTTCATAATCAAGATTCAAGATTCATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAGATTTCTGTGAATTTCTTGTGGTGGTAGTGATTGGAAGGAGTAGGAACAATGGTGGGTCGATCGCCAAGTTTGCTGTCCCGGAATGGAAGTTTTAGGCCAGAAAATCTGGGGCAAAATGCATTGGCAATTATAGGGAATCTCTGTTTCACTATATTTGTTGTTGGAGTTTTGATTTTTACTATAATGGCTGCAACTTATGAGCCTGAAGATCCTTTATTCCATCCTTCGACGAAAATCACTAATTTCCTTACGTCTAAATCTGACGCCACGTTTAAAGCTGATGACACTGTTATGAAGACTGGTGAGGACTTTATTGGTGCAAATCAGAAAGCATTTTCTACCTTCATAAACCTAACTGATGTCGACGTTTCGCTGTCAGCTACAGACAGTGGCACTGAGAGTGATCCTGATTGTCATGGGAAAACTGATGAACCAATTGATTGTAATGATCCAGATGTG-TTCATTTGTTGATGAGAGTAGCTATTGAGAAGTTCAAGGATATACATTTTTACAGGTTTGGGAAGTCAGTCCGTGGATCGAATGATAGTTCGTGCCACATGGCTTGGCGGTTTAGGCCTAAGGATGGAAAGACTGCTGCTTTTTACAAGGATTACCGCGAGTTTGTGGTTTCTAGGTCGGAGAACTGTACGCTTAGTGTGGTGAGCATTGGAGAGTATCATACTGGTGGAAATGCTCGGAAAAGGAAGAGAAAGAGCAAGGACAGAATTTCTGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Pi4Cli/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319584" ref_strand="+" ref_description="SGN-U319584        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | reticulon family protein, weak similarity to Nogo-C protein (Rattus norvegicus) GI:6822251; contains Pfam profile PF02453: Reticulon; identical to cDNA GI:32331854 | chr3:3171231-3172908 REVERSE | Aliases: None(evalue: 9e-78, score=287) genbank/nr: gi|30681227|ref|NP_850552.1| expressed protein [Arabidopsis thaliana](evalue: 7e-76, score=287)">
      <seq>ttttattttctttgctagtttctccagttttgagtactttgggtttataattcttgataaagaaaaaaagaaagaacaaaatgccggaaggaataacagctgagaatcttttgaacaacatcatggactctatttctgagggtgagctgaaacacaaagctacgtcattttttcaagacgaaagtgaaagctctgttagtgctcaattcaataggctatttggacgtcaaaaaccaatccaccactgtttaggtggaggcaaatcggctgatagcatgttgtggagaaacaagaaaatttcagccggcgttttaatcagtgctactgccatctgggtgctattcgagtggcttaactacaattttctttcacttctgtgctttggtctgtcctttggtctgatcgcgcagtttctgttgaaaaatgcttctggggtaataaacaggtctcctacggttcctcgtcttgtcttacctgaagacctcttcatcaatattgccaagagaattggcactgaaataaaccatggtttgggcttccttcaagatgctgccttgggcggtaatctgaaacaattcgtagtggttatactgagcttgtgggctgctggtatgatcggaacctggtgcaacttcttgactgttctgtatattggtttcatcgctgctcacactctaccagtgctatacgaaagatatgaagatgaagttgatggtttcgttcacagtgccctcgataagcttcaaggccattacaagaagctggattctggtgtcctcagcagactaccgcgaggcagcttcaggggaaagaaggttgaataaatcttcaatttactgaaggtaaactcgtggagaaaaaacattagcctgtatgcagagatcaaatatgaaactcgttttcgtgcttaggcaacacattgctgtatgtatgcttaggattaatcgacgaggtattgaactgtaggtcatctcgtcgtgtaaatgttgcaggtacttcgattgaagtttggtatttgaaaataaattgaattttgcagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-5UxcG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="31831" stop="26866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31531" g_stop="31470" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31469" i_stop="30244" i_length="1226">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.400" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30243" g_stop="30042" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="264" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30041" i_stop="29962" i_length="80">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29961" g_stop="29781" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="445" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29780" i_stop="28735" i_length="1046">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28734" g_stop="28596" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="584" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28595" i_stop="28027" i_length="569">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28026" g_stop="27957" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="654" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27956" i_stop="27559" i_length="398">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27558" g_stop="27171" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="1042" r_length="388" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1043" polyA_stop="1078"/>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-U319584" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1042</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31531" e_stop="31470"/>
          <exon e_start="30243" e_stop="30042"/>
          <exon e_start="29961" e_stop="29781"/>
          <exon e_start="28734" e_stop="28596"/>
          <exon e_start="28026" e_stop="27957"/>
          <exon e_start="27558" e_stop="27171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTTCTTTGCTAGTTTCTCCAGTTTTGAGTACTTTGGGTTTATAATTCTTGATAAAGGTTAGTCTTTTTCATTTACTCTTCATTTTTCCCTTTTGGGTTTTTGATTTTATGGTTCCATTGTTGTGATTTGTTCTTTACATTTTGTGTGTTTTAGAAAATTGTGGAAAAAATAATTAGTGGGGTACCATCATGATTCTTTGAAAAGTTTTAACTTTTGTAATGGAAATTGGTTAATTATGTTGGATAGTCAAGAAAGATTAGATCTTTTTGATCTGTCCCCTAGGAAAAACTAGGATTAGGTGAGAATTGCCTAAGAAAAAGGTTTACGTTATGAAGAAAATTGAACCAATATAAGTAGATTGGGGGTTGCAAACTAGGGTGTGGTGTAGTGGTTAATGAATTGGGTTGAGTACCATGAGGTCTCGGGTTTAAATCCTAACCGAGATGAAATACTAGGTGATTTGTTCCAATTTGGGGTATCTGTTGTTGTTGTTGTTAGTCGAGGTGCGCGCAAGCTGGCTTGAACACCATGGTTGGGGGTTGAGTGATAATTTGTCGTTCTTTATCTCGTTGCCTTTTGATAAATTTTAGTGTACATATGAGGTTTTTGGTTCTATTGATATTTATATCAATACCAAATCAGATTTTCCGCGTTCTGTTTCAGATGGAGGAGTACCATTTATCATAGCAAATAAAGAATTTATGCTGTCTAAGCTAAGCTATAGAAACTGATAAGTGCTTTTGGAATGTGACTAGTCGTGTGATTTCGTACAGTCAGTAGATTTCCTGTGTTATGTTTGGGGATTAATCCTGTATGACTTGTTGCTTCTCTGGAAGACACGGATTTTCTGATGAGTTTTAGGCTTCTCTTCTTGCTGTGTGTGTGTGTATTCATGTTTGCAAACTTCTTAGTTTCCTTTCGGATTGCTCCGTTCTTTAATATTATGAGCCTATTCTCCATTATTTCTTCTGAGGTACCTTTTTATTTTGTAATGCTAATATATGATTTGTGTTCTTGTTCAGTATTCTACTACTTTGATATATTACTTACCAAAAGCTTATTTTCTTTGGTTGTTGACGATGTTGCTTGGACTCTTCAAAAAATATTGACAAGTGTGCATTAGATCCTCCAAAAGTAGTGTATTTTGGGACAACATTTTTGGAGAGTCCGAGCAACATGATTTACCAGTATTTGGTCTACATGAATCTTGCAGATTTCCATAATGACTTTGTGCTGTGTGTTATTCTTCTGATGACTGACTTAGCTTCGTATGTGTCCAAAGAAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAATGTACGGTATTTTTATACATTATCGTCTTTATCTCGTTGTGGCTGTATACCAATACTGAATACATTTCCTCGGATTTGTAGCGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAGGTACCTTTATTATCTGTCACCATCTGTTGCTTATTATATTTCAGTAATCACACTATTTTGTTGATGTTATTGTCCCTTGCGTCTATGTTGTACACTATGTCCTATTAGTTTCCATGTTTTCTTCACTGCCACTTTTTCCTTTTCATTACTACTTTGATTTGCTTCACTTGAGCTGAGGGTCTTTCGAAAATAGTCTTTCTACCTTCACGAGGTAGAGGTAGGGGTAAGGTCTGCGTACACTTTACCCTCCCCAGATTGCACTTCGTGGAATTTCATTGGGTATGTTGTTGTTGGTAATAATAATGTCTGACATTGTCACATTGCATATAAAGGCCTCCGTTTGGTTTTAATTTTAAAGCTACAATATATCGTGTTACTTAACTCATTCGGTCAAGGTTTAGGTTGAATATTCACATTCTTTCATATAGGATATTTCCTCCATGTTTGTTGTTCTTTTTTCGTTTTTTCTTCGATGATCCTTTTAAGGGAGAAAATAACCAGAGTTATTTATGTAATATTTCAGGTGCTATAAGCCTTTGACAATACAGTCTGCTTACATTGTATCACAAAATAAGAAGTCATTTCTATAAACTATAAAGTACTAGGCATTATTTTTCTCCTAACACGCAGAAGTGTTGAATATTTAAGGATATCAAAATGCAAAGTTGCGAACAAATAAGTGTTGAATGATGTCTCCCAAAGACTGTCCATTTTTTAGCAGCTAGTTGCTGATACTTTAACATTTTTCTACCTAATAGATCCCTGAACTTTATAAATATTATATCCAAGTACTATTAAATGTGACTCCCAACGTACCCTAGGGTGTGGCCTAGTGGTTAATGAGGTGGGTTGAGAACCATAAGGTCTCAGTCATGGTCCATTTGGTAATACCTAATTCGGAATTTATCTGGCGTAAAAGACTGACCTGTAGTGGAGATTGTATATTTTCTAAAGCAATGTTCTCTTTTTGTACTTTGTTGTTCTAATTTGTGTGCTATATCACATTCTTGAATCAAATTAACGGCAGTTACATTCTATGGCAACAGGTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTGGTATGCTTAAAGTCATTAACCATACATATATATCATCAATTCTATTAAAAAGGATATGCTTACCGCAAAATGATAGAAAGTATGAAGTATTTAATTTGAATTATGTGGTCCTATTCCAAGTTACCTTTTTTTTTTTTATTGCGGGCATTAATCTTGCAGCCTTTCTTTGTATGTCGTAAGCTTTATTTGATTATCGTTTCTCTAGGTGAGGTGTGACATAAGTATGAACTGTTTCCGATCATAGACCACCAGGCAATAGAAAGCAAAGTGAGTTAGGTCTGCCTTCATAGGCTAATCGAGATAGGTTTCCCTTCTAAACTCAATTACGAGATCCCAAGTCTTCTACATTGTTTGTTCAATATACTCGCTAACTTATTTTCACAATCCCTAGTGATATTTTTGGACTAAGATCCATATCTTAGGCGAAAATTCTATGCTCCGATCACTAAATTTTCTTGCAGCTGTTTGACATCCCCCCACCCCCCCCTCATAAAAGACTCTTGCGGGTTGCCTGTCTCCCTGAAATCTCTTGCTCTTCGTTTTTTTTTATGTCTTCGGGTTTGTCATAGGTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTGGTAAGCGATCTCTCATTTTCATGATAGCGTACTACAGTTTATTCTTTCAGTATCAAACCGGGAGATGATTTCATTTCCAGATAGCAATTTCATACTGTTATGAAGCTGTCTAATATACGAATATAAACTCGTTATCTGGAACGTTTAAGACGGTGATAAGTAGAATATAGAGTCCTTTGACAAACAAGATCAGATGTTTTAAAAGTAGTACTAGTTAGTGTTGGAAATATAAGGCGGATCCTTGATAATATCATATGAAACAAAGGCTACGGAAGAGGGAGAAAGACAGTAAGTTTAATCATACCATTAGAAAAAATTCCGCTCTTACATTGCTGTTTTCATTACAACTATTAAAGGACGTTGTCTTGACTATACTTTGAATTTTGACTGTTTATAAGGTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTTACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTGGTGTCCTCAGCAGACTACCGCGAGGCAGCTTCAGGGGAAAGAAGGTTGAATAAATCTTCAATTTACTGAAGGTAAACTCGTGGAGAAAAAACATTAGCCTGTATGCAGAGATCAAATATGAAACTCGTTTTCGTGCTTAGGCAACACATTGCTGTATGTATGCTTAGGATTAATCGACGAGGTATTGAACTGTAGGTCATCTCGTCGTGTAAATGTTGCAGGTACTTCGATTGAAGTTTGGCATTTGAAAATAAATTGAATTTTGCAGAAA</genome_strand>
        <mrna_strand>TTTTATTTTCTTTGCTAGTTTCTCCAGTTTTGAGTACTTTGGGTTTATAATTCTTGATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAAT................................................................................CGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAAATAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTG..............................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTCACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTGGTGTCCTCAGCAGACTACCGCGAGGCAGCTTCAGGGGAAAGAAGGTTGAATAAATCTTCAATTTACTGAAGGTAAACTCGTGGAGAAAAAACATTAGCCTGTATGCAGAGATCAAATATGAAACTCGTTTTCGTGCTTAGGCAACACATTGCTGTATGTATGCTTAGGATTAATCGACGAGGTATTGAACTGTAGGTCATCTCGTCGTGTAAATGTTGCAGGTACTTCGATTGAAGTTTGGTATTTGAAAATAAATTGAATTTTGCAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Pi4Cli/lycopersicum_combined_unigene_seqs" ref_id="SGN-U340779" ref_strand="+" ref_description="SGN-U340779        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G08560.1 | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 7 WD-40 repeats (PF00400); similar to will die slowly protein (WDS) (SP:Q9V3J8) (Drosophila melanogaster) | chr5:2770875-2774673 REVERSE | Aliases: MAH20.12, MAH20_12 (evalue: 2e-75, score=279) genbank/nr: gi|15242311|ref|NP_196473.1| transducin / WD-40 repeat protein family [Arabidopsis thaliana] gi|9759350|dbj|BAB10005.1| WD-repeat protein-like [Arabidopsis thaliana] gi|15450910|gb|AAK96726.1| WD-repeat protein-like [Arabidopsis thaliana] gi|17978717|gb|AAL47352.1| WD-repeat protein-like [Arabidopsis thaliana](evalue: 1e-73, score=279)">
      <seq>tttcattctgtattatatcaccttcacaacaggttgtctcaggggagtcaggtccagaaataatgaaaataaaattaaggacaaagctactagaagaattgcagggactgtttcccacaacagtcatgcctcccgaaaaaagattgatccatctggttgaacaggggcttgaatttcaactgggatcttgttctcttcacaactcattaagcaatgacatgtcattgctcactgatcaccattgtggaatagataagattccatctcagactttgcagatattagaaggacacaaagatgaagtctggtttttggagttctctcataacgggaagtgtttggcctcgtcatctgctgattgttcagtaattatatgggaggtgaagttggatggaaggttatgcttgaagcacaaagttattggtcatgaggagcctgtgtgctttgtatcatggagccctgatgatagtcagcttctcacctgtggcctggaagaggtcgttagactgtgggatgtagactccggtgagtgtatacgtctttatgagaaaaatggtcttggttttatttcgtgtggatgggctccagatggggaaaggatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-5UxcG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="-" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51131" stop="48217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50831" g_stop="50554" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50553" i_stop="49620" i_length="934">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49619" g_stop="49518" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="380" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49517" i_stop="48741" i_length="777">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48740" g_stop="48517" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="604" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="-" ref_id="SGN-U340779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50831" e_stop="50554"/>
          <exon e_start="49619" e_stop="49518"/>
          <exon e_start="48740" e_stop="48517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTCTGTATTATATCACCTTCACAACAGGTTGTCTCAGGGGAGTCAGGTCCAGAAATAATGAAAATAAAATTAAGGACAAAGCTACTAGAAGAATTGCAGGGACTGTTTCCCACAACAGTCATGCCTCCCGAAAAAAGATTGATCCATCTGGTTGAACAGGGGCTTGAATTTCAACTGGGATCTTGTTCTCTTCACAACTCATTAAGCAATGACATGTCATTGCTCACTGATCACCATTGTGGAATAGATAAGATTCCATCTCAGACTTTGCAGGTTAGATCATATTTGAGTCTTGATACTTGTTTAACCTGCAAGCATTATCATTCCAGGATTGGTTGTCTGTCAATTGCATTATTAATCACCTTATAACTTATTCCATCTGTGTTTAAGTTTATATATCAGTGATATGTCTGAGGTGATGTGTTGATGAAGTGTTGAGTTTGTGCTTTCTATTGTGTAAAATTTTGGTTATTCCATATTTGGTTATGCTGTCATTGTGTCGATTGTGTTTTTCCTATATTTTATTCAGCAAAAGTACAAGTATGTGTATAAGGAATAAGTAGAATTTATCAAATTTTATCTACTCTAGACCTCTTTTGTGTCTGTGATAGAAGTCTAGGCATATTGCTGTCTACTCAACGATAATCCTTCTACGATACTGTAATATTCCTTCCTTGCCTTTGCTGGAATGGAGGGAAAATGTGAAGTCCAAGATTCATATAGTAAACTACGTGTACAGTGCCGATAGATGAGAACTACACAGTTATTCCACTTTATTGTTCTTTTCCTTCATTCTTTCATATTGGATTCATGGTTTAGATGTTCTAGATTTGAATGAGACCTGTCGAAGTGGGTTGTTGATTATCTTCCGTAGATATCAAAAAGGATGTATGCCCATGTATTTCCCCGTCCTTGCAGATTATGCAGAAAAGTTTGATATGTGACGACTTGGTTTGAGTTTTTCTTGTAGTGTCCTTGTATAGAGCTTGATTGCATGTATTCCTCATACACAGGCTTTTTTTCCTTCTTCCAACAATAATATCATTGAATTTGACTATGATTGGTAGAAGGGCTTAGATCATTTTTTTGGTTTTTGAGAATGAAGGGGTTTAGTCAATTATTGAAAGCTGAGAGTAAAAGAAATAAGAGAGGGGTTTATTGATCACGCTGAGCTCTAATCCTTTCTTCATTGTTTGTCGTGCACCAGATATTAGAAGGACACAAAGATGAAGTCTGGTTTTTGGAGTTCTCTCATAACGGGAAGTGTTTGGCCTCGTCATCTGCTGATTGTTCAGTAATTATATGGGAGGTAAGTTTAATTGCTCTTAAGTATTGCTCAACAGATTTTTGCTTTATCAAAGGTCCTCTTGACTAATGCTTGTTATATCCTTTATTATTTATTTTAATTAAACTTTTCTCCATTGAATTTCTTCTCTCTTTGCACCCGGTGCCATAATTTTCTTGCATGATCTTTATCCTTTAACTAATAATTTCAGAAAAAAGTTGCACTATTTTTGCTTCACTTTTCCATGCTGTGCCACAAATGAAATGTTTCTTTTTTGTAGATTCCACTGATGTATCTTTAGTATGACAGTAGAAAGTCCTTTGTCCATTTCTATTACTGATAAACCTTTAGTGAGAGTAGCTCCTCTTCCGCTCTAGAACTCTAACAATACCAACTTCTTTCTTTTTCGTCATCACACTAGCTATCTTTCCTTATTCCTTTCTGATTGTGTTCTTTCCCATGTTAGTCTTAACGAGATAACCATATCCTCAGCTATTTTTACCAATACATCTTTATGATCAAGTCTTGCTTCCCAAATGATTCTCAATTTATTCATATTTTATCCTACAATACCATTTAAACATTGTGTAACATTCATTCTCCGACCTAAAGAATCCTGCTATAGGTGTATATGATTTTGGTAAAAGATCTAAACAGATGGGTTTTCTGGTTCTCTTTCCCAGGGGTAGGTAGTTCAGAGAACAAGGGAAAAGTGAGCTGTTATTGCTGAAAAACTAAATTTTAATGGTAGATTTGACTGACGATTTATGTTGACCTCTCAATTATTTTGCCCTTCTGCAGGTGAAGTTGGATGGAAGGTTATGCTTGAAGCACAAAGTTATTGGTCATGAGGAGCCTGTGTGCTTTGTATCATGGAGCCCTGATGATAGTCAGCTTCTCACCTGTGGCCTGGAAGAGGTCGTTAGACTGTGGGATGTAGACTCCGGTGAGTGTATACGTCTTTATGAGAAAAATGGTCTTGGTTTTATTTCGTGTGGATGGGCTCCAGATGGGGAAAGGATATT</genome_strand>
        <mrna_strand>TTTCATTCTGTATTATATCACCTTCACAACAGGTTGTCTCAGGGGAGTCAGGTCCAGAAATAATGAAAATAAAATTAAGGACAAAGCTACTAGAAGAATTGCAGGGACTGTTTCCCACAACAGTCATGCCTCCCGAAAAAAGATTGATCCATCTGGTTGAACAGGGGCTTGAATTTCAACTGGGATCTTGTTCTCTTCACAACTCATTAAGCAATGACATGTCATTGCTCACTGATCACCATTGTGGAATAGATAAGATTCCATCTCAGACTTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGAAGGACACAAAGATGAAGTCTGGTTTTTGGAGTTCTCTCATAACGGGAAGTGTTTGGCCTCGTCATCTGCTGATTGTTCAGTAATTATATGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGTTGGATGGAAGGTTATGCTTGAAGCACAAAGTTATTGGTCATGAGGAGCCTGTGTGCTTTGTATCATGGAGCCCTGATGATAGTCAGCTTCTCACCTGTGGCCTGGAAGAGGTCGTTAGACTGTGGGATGTAGACTCCGGTGAGTGTATACGTCTTTATGAGAAAAATGGTCTTGGTTTTATTTCGTGTGGATGGGCTCCAGATGGGGAAAGGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Pi4Cli/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326973" ref_strand="+" ref_description="SGN-U326973        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:7881672-7885549 FORWARD | Aliases: MCB17.1, AT3G22280(evalue: 9e-28, score=121) genbank/nr: gi|30686584|ref|NP_188868.2| expressed protein [Arabidopsis thaliana] gi|13877821|gb|AAK43988.1| unknown protein [Arabidopsis thaliana](evalue: 7e-26, score=121)">
      <seq>tttaacttggtattagcaggcttgaacttctggaagtcttaaatcttacaaatctgaataggtgtaccttggcatcgacaccttcccagtttcattctgttaggctagtgaatttatccctgcaagctttgtaacactgaagcaaattatgaagatatttgttatttgtcttctatttcatttttaaagtgtttgcaattttctttctctacaaattcgcatttattttcagattcagtctatactctatagtggattcatgcccaagcatattcttttttcatgcctttttcggtaattaaggttgagagtttttgcagcttcgcttgaacagtgatggccatatcactggcactgagtatttgtcagaccttgttgagaaggaacgtgaagctcataaacatgatgtgcacaaagaacatcatgaagattcagacaagatccatctacagggcattgatgaagaatctcagaatatgatcaagaaggttaagcaagcattggctgatggggaaggatgcagggtgtatggagtattagatgtccagcgggttgctgggaatttccatttatccgttcatgggttgaacatttttgttgctcaaatggtcagctctgttggtattttatatttatagatttgatgggaatacatataactgttggaaagcatgcactattgcattgaactctgtcctattgtaagatatctatcaggtcaaattgtgtaagcagttgtgatccttaaaattagggcggtatagttggaagatgcttaaaagagtttgtttaagaaactagatcaataaccctcccgatggtgggagaggtagacagttctttccgtcagcttccggtgttctatcaagtaatatattggtggttcaagtaaagtgaaagctctgattcaatcaaacttgctacttattttgagcttatgcatgacaaaaggttgattgctctaaagctacttttctgattttgccttgtattttgatctatgatagtttgtgaaaaaaagtacagagaaattagcaataccatactaaagtaagttgtacagtacgtttctagatagtttgtgaaacaagtttagagaaattagtaataccatagttcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0073O10-5UxcG/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0073O10.1" temp_strand="+" temp_description="C12HBa0073O10.1  AC216291.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0073O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59130" stop="61393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59430" g_stop="59834" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59835" i_stop="60206" i_length="372">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60207" g_stop="60325" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="524" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60326" i_stop="60496" i_length="171">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60497" g_stop="61093" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="1123" r_length="599" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0073O10.1" gen_strand="+" ref_id="SGN-U326973" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1121</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0073O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59430" e_stop="59834"/>
          <exon e_start="60207" e_stop="60325"/>
          <exon e_start="60497" e_stop="61093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACTTGGTATTAGCAGGCTTGAACTTCTGGAAGTCTTAAATCTTACAAATCTGAATAGGTGTACCTTGGCATCGACACCTTCCCAGTTTCATTCTGTTAGGCTAGTGAATTTATCCCTGCAAGCTTTGTAACACTGAAGCAAATTATGAAGATATTTGTTATTTGTCTTCTATTTCATTTTTAAAGTGTTTGCAATTTTCTTTCTCTACAAATTCGCATTTATTTTCAGATTCAGTCTATACTCTATAGTGGATTCATGCCCAAGCATATTCTTTTTTCATGCCTTTTTCGGTAATTAAGGTTGAGAGTTTTTGCAGCTTCGCTTGAACAGTGATGGCCATATCACTGGCACTGAGTATTTGTCAGACCTTGTTGAGAAGGAACGTGAAGCTCATAAACATGGTAATGCTTTTGGTTCTTCTGCATTTGGGTAGTAGCATTAGTTTAACTCTCTGCTGCTCTTTATCCAAGTCCAAGTTGTATGCTGGTATGCTTTTGCCTTAACCTGCTTAGTGTGGCCTTTGCCGTTGATCATGTTAATGTTAATTTCTTGACAAATATAAAGAGCTTTGGTTAAACCTTAGCGACTTTTATCAAAATCCTGTCTTTCTGGAATCGGATAAATGGATTTAACTTACAAAGCGCAAATAACTTGAGAAATTCCATTTGTATGGATATATCAGTTGATTAGTTTGTGATCTAGCTTGCATAACACAACTGAGTATTAGTCTCCTACAAATTGATAACATGGTTTTAAGTAACAATTTTTACCAGATGTGCACAAAGAACATCATGAAGATTCAGACAAGATCCATCTACAGGGCATTGATGAAGAATCTCAGAATATGATCAAGAAGGTTAAGCAAGCATTGGCTGATGGGGAAGGATGCAGGGTATTTGTTTTGGTTGCTTTGTATTATGTTTGTTCTCATACCTGTGATTCCATTCCCCCTGCCCCCACCCCCGGTATCCTTTTCACTTTGGGCCTAAAATATGCTGCCACTTTGGCTAACTATACGCTATAGCAGTGTCGCACCAACTGATACCTACATTGTTGCGTGCAGGTGTATGGAGTATTAGATGTCCAGCGGGTTGCTGGGAATTTCCATTTATCCGTTCATGGGTTGAACATTTTTGTTGCTCAAATGGTCAGCTCTGTTGATATTTTATATTTATAGATTTGATGAGAATACATATAACTGTTGGAAAGCATGCACTATTGCATTGAACTCTGTCCTATTGTAAGATATCTATCAGGTCAAATTGTGTAAGCAGTTGTGATCCTTAAAATTAGGGCGGTATAGTTGGAAGATGCTTAAAAGAGTTTGTTTAAGAAACTAGATCAATAACCCTCCCGATAGTGGGAGAGGTAGACAGTTCTTTCCGTCAGCTTCCAGTGTTCTATCAAGTAATATATTGGTGGTTCAAGTAAAGTGAAAGCTCTGATTCAATCAAACTTGCTACTTATTTTGAGCTTATGCATGACAAAAGGTTGATTGCTCTAAAGCTACTTTTCTGATTTTG-CTTGTATTTTGATCTATGATAGTTTGTGAAAAAAAGTAGAGAGAAATTAGCAATACCATAGT-AAGTAAGTTGTACAGTAAGTTTCTAGATAGTTTGTGAAACAAGTTTAGAGAAATTAGCAATACCATAGTTCCTAA</genome_strand>
        <mrna_strand>TTTAACTTGGTATTAGCAGGCTTGAACTTCTGGAAGTCTTAAATCTTACAAATCTGAATAGGTGTACCTTGGCATCGACACCTTCCCAGTTTCATTCTGTTAGGCTAGTGAATTTATCCCTGCAAGCTTTGTAACACTGAAGCAAATTATGAAGATATTTGTTATTTGTCTTCTATTTCATTTTTAAAGTGTTTGCAATTTTCTTTCTCTACAAATTCGCATTTATTTTCAGATTCAGTCTATACTCTATAGTGGATTCATGCCCAAGCATATTCTTTTTTCATGCCTTTTTCGGTAATTAAGGTTGAGAGTTTTTGCAGCTTCGCTTGAACAGTGATGGCCATATCACTGGCACTGAGTATTTGTCAGACCTTGTTGAGAAGGAACGTGAAGCTCATAAACATG....................................................................................................................................................................................................................................................................................................................................................................................ATGTGCACAAAGAACATCATGAAGATTCAGACAAGATCCATCTACAGGGCATTGATGAAGAATCTCAGAATATGATCAAGAAGGTTAAGCAAGCATTGGCTGATGGGGAAGGATGCAGG...........................................................................................................................................................................GTGTATGGAGTATTAGATGTCCAGCGGGTTGCTGGGAATTTCCATTTATCCGTTCATGGGTTGAACATTTTTGTTGCTCAAATGGTCAGCTCTGTTGGTATTTTATATTTATAGATTTGATGGGAATACATATAACTGTTGGAAAGCATGCACTATTGCATTGAACTCTGTCCTATTGTAAGATATCTATCAGGTCAAATTGTGTAAGCAGTTGTGATCCTTAAAATTAGGGCGGTATAGTTGGAAGATGCTTAAAAGAGTTTGTTTAAGAAACTAGATCAATAACCCTCCCGATGGTGGGAGAGGTAGACAGTTCTTTCCGTCAGCTTCCGGTGTTCTATCAAGTAATATATTGGTGGTTCAAGTAAAGTGAAAGCTCTGATTCAATCAAACTTGCTACTTATTTTGAGCTTATGCATGACAAAAGGTTGATTGCTCTAAAGCTACTTTTCTGATTTTGCCTTGTATTTTGATCTATGATAGTTTGTGAAAAAAAGTACAGAGAAATTAGCAATACCATACTAAAGTAAGTTGTACAGTACGTTTCTAGATAGTTTGTGAAACAAGTTTAGAGAAATTAGTAATACCATAGTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6991" PGL_stop="13077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6991" e_stop="7411"/>
            <exon e_start="7764" e_stop="7989"/>
            <exon e_start="8293" e_stop="9484"/>
            <exon e_start="12665" e_stop="13077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.910" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6991" e_stop="7411" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.969">
            <gDNA_intron_boundary i_start="7412" i_stop="7763" i_length="352"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7764" e_stop="7989" e_length="226"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="7990" i_stop="8292" i_length="303"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8293" e_stop="9484" e_length="1192"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.910">
            <gDNA_intron_boundary i_start="9485" i_stop="12664" i_length="3180"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="12665" e_stop="13077" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6991" stop="7411"/>
              <exon start="7764" stop="7989"/>
              <exon start="8293" stop="9484"/>
              <exon start="12665" stop="13077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAATTTAATCATCAAAATCAAAACTTTTTAAAAGGGTTGAATCAATCTGTTATTGTTATCATAGTGTGTAAAAAATCTTGAAGAAAAAAGATAAAATCTTGAAAAAAGAACAGTGGGAACAGAAAAGTAAAGAGGGCTAATATAGAGGAGGAAGAACATCGCCCTCGGTTCTAGTTACTGTGCCTCCTCTGTAGATCTTATTGATTTGGGTGATTTTGTTAAATGGGTATTGTTCAAAAGATAGATTCTTGATTTGTGTATTTGTTAATTTTTTTTTTATGAAAAAAGTTTGATGAAATCATTTTTCATTGTTGGGGTTGTTTTGATCCGTTTAGTTTGATTGAATCTGATAATTATTGGATCAGTTACAGATTGTTGTGTGTCTCTGAAGCTCTTCATTATACTTCACAGTAAAAAAG : GAAAATGCAAGTTGATCTTGGTAAGTTATTCGTTGGTGGGATTTCATGGGACACAGACGACGAGCGTCTGAAGGAGTATTTTAGTACTTATGGGGAGGTTGTAGAAGCTGTAATTATGAAGGATAGGACTACTGGCCGTGCTCGTGGTTTCGGTTTTGTGGTCTTTGCTGATCCTGCTGCTGCTGAGAGGGTAGTAAAGGAGAAACACAACATTGATGGCAGGATG : GTAGAAGCAAAGAGGGCAGTTCCACGGGATGACCAGAGCACGACAAGTAGAAGCAGTCCTAGTATTCATGGTTCTCCTAGTCCTGGTCCAGGACGTACAAGAAAGATTTTCGTTGGTGGTTTAGCATCCACTGTCACTGAGACTGCCTTTAAGCAGTATTTTGAGCAATTTGGAACAATCACAGATGCAGTAGTTATGTATGATCATAACACTCAAAGGCCTAGGGGATTTGGATTCATCACTTATGATTCAGAGGATGCAGTGGATAAAGTCTTGCTCAAGTCTTACCATGAGCTGAATGATAAAATGGTTGAGGTCAAGCGCGCTGTTCCCAAAGAGTTATCCCCAGGTCCTAGCCAAAGTCCACTTGGTCGGTACAGCTATGGATTAAATAGGATGAATAACTTCCTTGATGGGTATGCACAGGGATACTCTCCAAATACAGTTGGAGGATATGGAGTCGGTATGGATGGTAGATTTAGCCCCATCACTGGGGGTAGGAGTGTCTTTACTCCATTTGGTTCTGGTTATGGTATGGGTCTTAACTTTGAACCAGGTCTGAGCCCAGGATATGGTGGTAGTGCAAATGTTAACAGTAGTTTAAGCTATGGACGGGGACTGAATCCATATTATAGCTCAAGCAGACTTGGTGGTGGCATTGGGTTTGACGGAGGAAGTGGGGGAGGAAACACTTCTTTCTTAAACTCAGCAAATCGCAATTTATGGGGTGATGGAGGACTGCACCATGGGACGACCTCGACAAGCTCTAGCAACTTTTTAGTATCTGGAAGTGGTGGAAACATTGGAGGAGGAAGCTTTAGCAACAGTGGAGTTTGGGGTTCATCAATTTCCTCTCAAGGCGGGGGAAATGTTTCTAGCAAAAATGGAAATCTCGGATATGTGAATGGTGACAGCATATATGGGATGGCAGGAGGCTATGGCAGAAACGTCACAAAACGTGGAGCCGCTATGCCATCAGGATCCAGGGGTAGTTATGATGGGGGCCCTTTAGCTGATTTATATGGTAGTGGTTTGGGATATGATGATCACACTTGGCGTCCTTCAAATTCTGAGCAGGATGCAACCGGTTCTCTTGGTTATGGACTAGGCAATGGACCTTCTGACATGTCACCTCAAAGTACTTCAGGTTATGTTGGTAGTTATGGAGTTGGCAATAGACAACCAAACAGAG : GAATGGACGGCTAGGAGAATGTCTCGAATCAAGGCTGTTATAGTACGCGAGATCTTTTTCCGTCTAAGTTGAATCATGAATTTTGAATATTTCCACAAATTATATAAAACTTAAGAAGAGTTGGACTTCCTTTTGTAGGGGACTTGGAAATGCCTGCTTTTTGAAGGTCTAGAGATAGAACTTTGCAAGACACTTTGTTTTAAAATGATAATTTTTTTTTTTTTGAGTTATGTTTTAGAAATTTCCTCTTTTTTTTCCTCTTCAAGTAAGGTGTAAAATCAAATTGCAGCTGCAGCAATACATACAAAGGAAATAGACAGTTTATTTTTGCACAAAATTTTTATATTCCATGTTTTTGCTGTAAACGCGTCGAATGTTATGTAATGCTTTCTCTATTATTTGCTACGTCTTCT</gDNA_template>
            <first_frame> I  N  L  I  I  K  I  K  T  F  *  K  G  *  I  N  L  L  L  L  S  *  C  V  K  N  L  E  E  K  R  *  N  L  E  K  R  T  V  G  T  E  K  *  R  G  L  I  *  R  R  K  N  I  A  L  G  S  S  Y  C  A  S  S  V  D  L  I  D  L  G  D  F  V  K  W  V  L  F  K  R  *  I  L  D  L  C  I  C  *  F  F  F  Y  E  K  S  L  M  K  S  F  F  I  V  G  V  V  L  I  R  L  V  *  L  N  L  I  I  I  G  S  V  T  D  C  C  V  S  L  K  L  F  I  I  L  H  S  K  K   : G  K  C  K  L  I  L  V  S  Y  S  L  V  G  F  H  G  T  Q  T  T  S  V  *  R  S  I  L  V  L  M  G  R  L  *  K  L  *  L  *  R  I  G  L  L  A  V  L  V  V  S  V  L  W  S  L  L  I  L  L  L  L  R  G  *  *  R  R  N  T  T  L  M  A  G  W :   *  K  Q  R  G  Q  F  H  G  M  T  R  A  R  Q  V  E  A  V  L  V  F  M  V  L  L  V  L  V  Q  D  V  Q  E  R  F  S  L  V  V  *  H  P  L  S  L  R  L  P  L  S  S  I  L  S  N  L  E  Q  S  Q  M  Q  *  L  C  M  I  I  T  L  K  G  L  G  D  L  D  S  S  L  M  I  Q  R  M  Q  W  I  K  S  C  S  S  L  T  M  S  *  M  I  K  W  L  R  S  S  A  L  F  P  K  S  Y  P  Q  V  L  A  K  V  H  L  V  G  T  A  M  D  *  I  G  *  I  T  S  L  M  G  M  H  R  D  T  L  Q  I  Q  L  E  D  M  E  S  V  W  M  V  D  L  A  P  S  L  G  V  G  V  S  L  L  H  L  V  L  V  M  V  W  V  L  T  L  N  Q  V  *  A  Q  D  M  V  V  V  Q  M  L  T  V  V  *  A  M  D  G  D  *  I  H  I  I  A  Q  A  D  L  V  V  A  L  G  L  T  E  E  V  G  E  E  T  L  L  S  *  T  Q  Q  I  A  I  Y  G  V  M  E  D  C  T  M  G  R  P  R  Q  A  L  A  T  F  *  Y  L  E  V  V  E  T  L  E  E  E  A  L  A  T  V  E  F  G  V  H  Q  F  P  L  K  A  G  E  M  F  L  A  K  M  E  I  S  D  M  *  M  V  T  A  Y  M  G  W  Q  E  A  M  A  E  T  S  Q  N  V  E  P  L  C  H  Q  D  P  G  V  V  M  M  G  A  L  *  L  I  Y  M  V  V  V  W  D  M  M  I  T  L  G  V  L  Q  I  L  S  R  M  Q  P  V  L  L  V  M  D  *  A  M  D  L  L  T  C  H  L  K  V  L  Q  V  M  L  V  V  M  E  L  A  I  D  N  Q  T  E  :  E  W  T  A  R  R  M  S  R  I  K  A  V  I  V  R  E  I  F  F  R  L  S  *  I  M  N  F  E  Y  F  H  K  L  Y  K  T  *  E  E  L  D  F  L  L  *  G  T  W  K  C  L  L  F  E  G  L  E  I  E  L  C  K  T  L  C  F  K  M  I  I  F  F  F  L  S  Y  V  L  E  I  S  S  F  F  S  S  S  S  K  V  *  N  Q  I  A  A  A  A  I  H  T  K  E  I  D  S  L  F  L  H  K  I  F  I  F  H  V  F  A  V  N  A  S  N  V  M  *  C  F  L  Y  Y  L  L  R  L   </first_frame>
            <second_frame>  L  I  *  S  S  K  S  K  L  F  K  R  V  E  S  I  C  Y  C  Y  H  S  V  *  K  I  L  K  K  K  D  K  I  L  K  K  E  Q  W  E  Q  K  S  K  E  G  *  Y  R  G  G  R  T  S  P  S  V  L  V  T  V  P  P  L  *  I  L  L  I  W  V  I  L  L  N  G  Y  C  S  K  D  R  F  L  I  C  V  F  V  N  F  F  F  M  K  K  V  *  *  N  H  F  S  L  L  G  L  F  *  S  V  *  F  D  *  I  *  *  L  L  D  Q  L  Q  I  V  V  C  L  *  S  S  S  L  Y  F  T  V  K  K  :  E  N  A  S  *  S  W  *  V  I  R  W  W  D  F  M  G  H  R  R  R  A  S  E  G  V  F  *  Y  L  W  G  G  C  R  S  C  N  Y  E  G  *  D  Y  W  P  C  S  W  F  R  F  C  G  L  C  *  S  C  C  C  *  E  G  S  K  G  E  T  Q  H  *  W  Q  D   : G  R  S  K  E  G  S  S  T  G  *  P  E  H  D  K  *  K  Q  S  *  Y  S  W  F  S  *  S  W  S  R  T  Y  K  K  D  F  R  W  W  F  S  I  H  C  H  *  D  C  L  *  A  V  F  *  A  I  W  N  N  H  R  C  S  S  Y  V  *  S  *  H  S  K  A  *  G  I  W  I  H  H  L  *  F  R  G  C  S  G  *  S  L  A  Q  V  L  P  *  A  E  *  *  N  G  *  G  Q  A  R  C  S  Q  R  V  I  P  R  S  *  P  K  S  T  W  S  V  Q  L  W  I  K  *  D  E  *  L  P  *  W  V  C  T  G  I  L  S  K  Y  S  W  R  I  W  S  R  Y  G  W  *  I  *  P  H  H  W  G  *  E  C  L  Y  S  I  W  F  W  L  W  Y  G  S  *  L  *  T  R  S  E  P  R  I  W  W  *  C  K  C  *  Q  *  F  K  L  W  T  G  T  E  S  I  L  *  L  K  Q  T  W  W  W  H  W  V  *  R  R  K  W  G  R  K  H  F  F  L  K  L  S  K  S  Q  F  M  G  *  W  R  T  A  P  W  D  D  L  D  K  L  *  Q  L  F  S  I  W  K  W  W  K  H  W  R  R  K  L  *  Q  Q  W  S  L  G  F  I  N  F  L  S  R  R  G  K  C  F  *  Q  K  W  K  S  R  I  C  E  W  *  Q  H  I  W  D  G  R  R  L  W  Q  K  R  H  K  T  W  S  R  Y  A  I  R  I  Q  G  *  L  *  W  G  P  F  S  *  F  I  W  *  W  F  G  I  *  *  S  H  L  A  S  F  K  F  *  A  G  C  N  R  F  S  W  L  W  T  R  Q  W  T  F  *  H  V  T  S  K  Y  F  R  L  C  W  *  L  W  S  W  Q  *  T  T  K  Q  R :   N  G  R  L  G  E  C  L  E  S  R  L  L  *  Y  A  R  S  F  S  V  *  V  E  S  *  I  L  N  I  S  T  N  Y  I  K  L  K  K  S  W  T  S  F  C  R  G  L  G  N  A  C  F  L  K  V  *  R  *  N  F  A  R  H  F  V  L  K  *  *  F  F  F  F  *  V  M  F  *  K  F  P  L  F  F  P  L  Q  V  R  C  K  I  K  L  Q  L  Q  Q  Y  I  Q  R  K  *  T  V  Y  F  C  T  K  F  L  Y  S  M  F  L  L  *  T  R  R  M  L  C  N  A  F  S  I  I  C  Y  V  F  </second_frame>
            <third_frame>   *  F  N  H  Q  N  Q  N  F  L  K  G  L  N  Q  S  V  I  V  I  I  V  C  K  K  S  *  R  K  K  I  K  S  *  K  K  N  S  G  N  R  K  V  K  R  A  N  I  E  E  E  E  H  R  P  R  F  *  L  L  C  L  L  C  R  S  Y  *  F  G  *  F  C  *  M  G  I  V  Q  K  I  D  S  *  F  V  Y  L  L  I  F  F  L  *  K  K  F  D  E  I  I  F  H  C  W  G  C  F  D  P  F  S  L  I  E  S  D  N  Y  W  I  S  Y  R  L  L  C  V  S  E  A  L  H  Y  T  S  Q  *  K  R :   K  M  Q  V  D  L  G  K  L  F  V  G  G  I  S  W  D  T  D  D  E  R  L  K  E  Y  F  S  T  Y  G  E  V  V  E  A  V  I  M  K  D  R  T  T  G  R  A  R  G  F  G  F  V  V  F  A  D  P  A  A  A  E  R  V  V  K  E  K  H  N  I  D  G  R  M  :  V  E  A  K  R  A  V  P  R  D  D  Q  S  T  T  S  R  S  S  P  S  I  H  G  S  P  S  P  G  P  G  R  T  R  K  I  F  V  G  G  L  A  S  T  V  T  E  T  A  F  K  Q  Y  F  E  Q  F  G  T  I  T  D  A  V  V  M  Y  D  H  N  T  Q  R  P  R  G  F  G  F  I  T  Y  D  S  E  D  A  V  D  K  V  L  L  K  S  Y  H  E  L  N  D  K  M  V  E  V  K  R  A  V  P  K  E  L  S  P  G  P  S  Q  S  P  L  G  R  Y  S  Y  G  L  N  R  M  N  N  F  L  D  G  Y  A  Q  G  Y  S  P  N  T  V  G  G  Y  G  V  G  M  D  G  R  F  S  P  I  T  G  G  R  S  V  F  T  P  F  G  S  G  Y  G  M  G  L  N  F  E  P  G  L  S  P  G  Y  G  G  S  A  N  V  N  S  S  L  S  Y  G  R  G  L  N  P  Y  Y  S  S  S  R  L  G  G  G  I  G  F  D  G  G  S  G  G  G  N  T  S  F  L  N  S  A  N  R  N  L  W  G  D  G  G  L  H  H  G  T  T  S  T  S  S  S  N  F  L  V  S  G  S  G  G  N  I  G  G  G  S  F  S  N  S  G  V  W  G  S  S  I  S  S  Q  G  G  G  N  V  S  S  K  N  G  N  L  G  Y  V  N  G  D  S  I  Y  G  M  A  G  G  Y  G  R  N  V  T  K  R  G  A  A  M  P  S  G  S  R  G  S  Y  D  G  G  P  L  A  D  L  Y  G  S  G  L  G  Y  D  D  H  T  W  R  P  S  N  S  E  Q  D  A  T  G  S  L  G  Y  G  L  G  N  G  P  S  D  M  S  P  Q  S  T  S  G  Y  V  G  S  Y  G  V  G  N  R  Q  P  N  R   : G  M  D  G  *  E  N  V  S  N  Q  G  C  Y  S  T  R  D  L  F  P  S  K  L  N  H  E  F  *  I  F  P  Q  I  I  *  N  L  R  R  V  G  L  P  F  V  G  D  L  E  M  P  A  F  *  R  S  R  D  R  T  L  Q  D  T  L  F  *  N  D  N  F  F  F  F  E  L  C  F  R  N  F  L  F  F  F  L  F  K  *  G  V  K  S  N  C  S  C  S  N  T  Y  K  G  N  R  Q  F  I  F  A  Q  N  F  Y  I  P  C  F  C  C  K  R  V  E  C  Y  V  M  L  S  L  L  F  A  T  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7407" stop="7411"/>
                    <exon start="7764" stop="7989"/>
                    <exon start="8293" stop="9484"/>
                    <exon start="12665" stop="12678"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1434</number_coding_nucleotides>
                  <number_encoded_amino_acids>478</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRKMQVDLGKLFVGGISWDTDDERLKEYFSTYGEVVEAVIMKDRTTGRARGFGFVVFADPAAAERVVKEKHNIDGRMVEAKRAVPRDDQSTTSRSSPSIHGSPSPGPGRTRKIFVGGLASTVTETAFKQYFEQFGTITDAVVMYDHNTQRPRGFGFITYDSEDAVDKVLLKSYHELNDKMVEVKRAVPKELSPGPSQSPLGRYSYGLNRMNNFLDGYAQGYSPNTVGGYGVGMDGRFSPITGGRSVFTPFGSGYGMGLNFEPGLSPGYGGSANVNSSLSYGRGLNPYYSSSRLGGGIGFDGGSGGGNTSFLNSANRNLWGDGGLHHGTTSTSSSNFLVSGSGGNIGGGSFSNSGVWGSSISSQGGGNVSSKNGNLGYVNGDSIYGMAGGYGRNVTKRGAAMPSGSRGSYDGGPLADLYGSGLGYDDHTWRPSNSEQDATGSLGYGLGNGPSDMSPQSTSGYVGSYGVGNRQPNRGMDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="23474" PGL_stop="25427"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23474" e_stop="23528"/>
            <exon e_start="24682" e_stop="25427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="0.982"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="23474" e_stop="23528" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="23529" i_stop="24681" i_length="1153"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="24682" e_stop="25427" e_length="746"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23474" stop="23528"/>
              <exon start="24682" stop="25427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344675" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGAATCCATTTTGAGCTAAAAGGGGTTCATAATCAAGATTCAAGATTCATGAG : GCCTTGGAGATTTCTGTGAATTTCTTGTGGTGGTAGTGATTGGAAGGAGTAGGAACAATGGTGGGTCGATCGCCAAGTTTGCTGTCCCGGAATGGAAGTTTTAGGCCAGAAAATCTGGGGCAAAATACATTGGCAATTATAGGGAATCTCTGTTTCACTATATTTGTTGTTGGAGTTTTGATTTTTACTATAATGGCTGCAACTTATGAGCCTGAAGATCCTTTATTCCATCCTTCGACGAAAATCACTAATTTCCTTACGTCTAAATCTGACGCCACGTTTAAAGCTGATGACACTGTTATGAAGACTGGTGAGGACTTTATTGGTGCAAATCAGAAAGCATTTTCTACCTTCATAAACCTAACTGATGTCGACGTTTCGCTGTCAGCTACAGACAGTGGCACTGAGAGTGATCCTGATTGTCATGGGAAAACTGATGAACCAATTGATTGTAATGATCCAGATGTGTTTCATTTGTTGATGAGAGTAGCTATTGAGAAGTTCAAGGATATACATTTTTACAGATTTGGGAAGTCAGTCCGTGGATCGAATGATAGTTCGTGCCACATGGCTTGGCGGTTTAGGCCTAAGGATGGAAAGACTGCTGCTTTTTACAAGGATTACCGCGAGTTTGTGGTTTCTAGGTCGGAGAACTGTACGCTTAGTGTGGTGAGCATTGGAGAGTATCATACTGGTGGAAATGCTCGGAAAAGGAAGAGAAAGAGCAAGGACAGAATTTCTGGTAA</gDNA_template>
            <first_frame> V  E  S  I  L  S  *  K  G  F  I  I  K  I  Q  D  S  *   : G  L  G  D  F  C  E  F  L  V  V  V  V  I  G  R  S  R  N  N  G  G  S  I  A  K  F  A  V  P  E  W  K  F  *  A  R  K  S  G  A  K  Y  I  G  N  Y  R  E  S  L  F  H  Y  I  C  C  W  S  F  D  F  Y  Y  N  G  C  N  L  *  A  *  R  S  F  I  P  S  F  D  E  N  H  *  F  P  Y  V  *  I  *  R  H  V  *  S  *  *  H  C  Y  E  D  W  *  G  L  Y  W  C  K  S  E  S  I  F  Y  L  H  K  P  N  *  C  R  R  F  A  V  S  Y  R  Q  W  H  *  E  *  S  *  L  S  W  E  N  *  *  T  N  *  L  *  *  S  R  C  V  S  F  V  D  E  S  S  Y  *  E  V  Q  G  Y  T  F  L  Q  I  W  E  V  S  P  W  I  E  *  *  F  V  P  H  G  L  A  V  *  A  *  G  W  K  D  C  C  F  L  Q  G  L  P  R  V  C  G  F  *  V  G  E  L  Y  A  *  C  G  E  H  W  R  V  S  Y  W  W  K  C  S  E  K  E  E  K  E  Q  G  Q  N  F  W  * </first_frame>
            <second_frame>  *  N  P  F  *  A  K  R  G  S  *  S  R  F  K  I  H  E  :  A  L  E  I  S  V  N  F  L  W  W  *  *  L  E  G  V  G  T  M  V  G  R  S  P  S  L  L  S  R  N  G  S  F  R  P  E  N  L  G  Q  N  T  L  A  I  I  G  N  L  C  F  T  I  F  V  V  G  V  L  I  F  T  I  M  A  A  T  Y  E  P  E  D  P  L  F  H  P  S  T  K  I  T  N  F  L  T  S  K  S  D  A  T  F  K  A  D  D  T  V  M  K  T  G  E  D  F  I  G  A  N  Q  K  A  F  S  T  F  I  N  L  T  D  V  D  V  S  L  S  A  T  D  S  G  T  E  S  D  P  D  C  H  G  K  T  D  E  P  I  D  C  N  D  P  D  V  F  H  L  L  M  R  V  A  I  E  K  F  K  D  I  H  F  Y  R  F  G  K  S  V  R  G  S  N  D  S  S  C  H  M  A  W  R  F  R  P  K  D  G  K  T  A  A  F  Y  K  D  Y  R  E  F  V  V  S  R  S  E  N  C  T  L  S  V  V  S  I  G  E  Y  H  T  G  G  N  A  R  K  R  K  R  K  S  K  D  R  I  S  G   </second_frame>
            <third_frame>   R  I  H  F  E  L  K  G  V  H  N  Q  D  S  R  F  M  R :   P  W  R  F  L  *  I  S  C  G  G  S  D  W  K  E  *  E  Q  W  W  V  D  R  Q  V  C  C  P  G  M  E  V  L  G  Q  K  I  W  G  K  I  H  W  Q  L  *  G  I  S  V  S  L  Y  L  L  L  E  F  *  F  L  L  *  W  L  Q  L  M  S  L  K  I  L  Y  S  I  L  R  R  K  S  L  I  S  L  R  L  N  L  T  P  R  L  K  L  M  T  L  L  *  R  L  V  R  T  L  L  V  Q  I  R  K  H  F  L  P  S  *  T  *  L  M  S  T  F  R  C  Q  L  Q  T  V  A  L  R  V  I  L  I  V  M  G  K  L  M  N  Q  L  I  V  M  I  Q  M  C  F  I  C  *  *  E  *  L  L  R  S  S  R  I  Y  I  F  T  D  L  G  S  Q  S  V  D  R  M  I  V  R  A  T  W  L  G  G  L  G  L  R  M  E  R  L  L  L  F  T  R  I  T  A  S  L  W  F  L  G  R  R  T  V  R  L  V  W  *  A  L  E  S  I  I  L  V  E  M  L  G  K  G  R  E  R  A  R  T  E  F  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24721" stop="25425"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEGVGTMVGRSPSLLSRNGSFRPENLGQNTLAIIGNLCFTIFVVGVLIFTIMAATYEPEDPLFHPSTKITNFLTSKSDATFKADDTVMKTGEDFIGANQKAFSTFINLTDVDVSLSATDSGTESDPDCHGKTDEPIDCNDPDVFHLLMRVAIEKFKDIHFYRFGKSVRGSNDSSCHMAWRFRPKDGKTAAFYKDYREFVVSRSENCTLSVVSIGEYHTGGNARKRKRKSKDRISG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="31531" PGL_stop="27171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31531" e_stop="31470"/>
            <exon e_start="30243" e_stop="30042"/>
            <exon e_start="29961" e_stop="29781"/>
            <exon e_start="28734" e_stop="28596"/>
            <exon e_start="28026" e_stop="27957"/>
            <exon e_start="27558" e_stop="27171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.400" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.486" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.982" e_score="0.993"/>
          <exon-intron don_prob="0.982" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31531" e_stop="31470" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.400">
            <gDNA_intron_boundary i_start="31469" i_stop="30244" i_length="1226"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30243" e_stop="30042" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="0.916" acc_prob="0.982">
            <gDNA_intron_boundary i_start="30041" i_stop="29962" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29961" e_stop="29781" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.486">
            <gDNA_intron_boundary i_start="29780" i_stop="28735" i_length="1046"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="28734" e_stop="28596" e_length="139"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.982">
            <gDNA_intron_boundary i_start="28595" i_stop="28027" i_length="569"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28026" e_stop="27957" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.945">
            <gDNA_intron_boundary i_start="27956" i_stop="27559" i_length="398"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="27558" e_stop="27171" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31531" stop="31470"/>
              <exon start="30243" stop="30042"/>
              <exon start="29961" stop="29781"/>
              <exon start="28734" stop="28596"/>
              <exon start="28026" stop="27957"/>
              <exon start="27558" stop="27171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319584" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATTTTCTTTGCTAGTTTCTCCAGTTTTGAGTACTTTGGGTTTATAATTCTTGATAAAG : AAAAAAAGAAAGAACAAAATGCCGGAAGGAATAACAGCTGAGAATCTTTTGAACAACATCATGGACTCTATTTCTGAGGGTGAGCTGAAACACAAAGCTACGTCATTTTTTCAAGACGAAAGTGAAAGCTCTGTTAGTGCTCAATTCAATAGGCTATTTGGACGTCAAAAACCAATCCACCACTGTTTAGGTGGAGGCAAAT : CGGCTGATAGCATGTTGTGGAGAAACAAGAAAATTTCAGCCGGCGTTTTAATCAGTGCTACTGCCATCTGGGTGCTATTCGAGTGGCTTAACTACAATTTTCTTTCACTTCTGTGCTTTGGTCTGTCCTTTGGTCTGATCGCGCAGTTTCTGTTGAAAAATGCTTCTGGGGTAATAAACAG : GTCTCCTACGGTTCCTCGTCTTGTCTTACCTGAAGACCTCTTCATCAATATTGCCAAGAGAATTGGCACTGAATTAAACCATGGTTTGGGCTTCCTTCAAGATGCTGCCTTGGGCGGTAATCTGAAACAATTCGTAGTG : GTTATACTGAGCTTGTGGGCTGCTGGTATGATCGGAACCTGGTGCAACTTCTTGACTGTTCTGTATATTG : GTTTCATCGCTGCTCACACTCTACCAGTGCTATACGAAAGATATGAAGATGAAGTTGATGGTTTCGTTTACAGTGCCCTCGATAAGCTTCAAGGCCATTACAAGAAGCTGGATTCTGGTGTCCTCAGCAGACTACCGCGAGGCAGCTTCAGGGGAAAGAAGGTTGAATAAATCTTCAATTTACTGAAGGTAAACTCGTGGAGAAAAAACATTAGCCTGTATGCAGAGATCAAATATGAAACTCGTTTTCGTGCTTAGGCAACACATTGCTGTATGTATGCTTAGGATTAATCGACGAGGTATTGAACTGTAGGTCATCTCGTCGTGTAAATGTTGCAGGTACTTCGATTGAAGTTTGGCATTTGAAAATAAATTGAATTTTGCAGAAA</gDNA_template>
            <first_frame> F  Y  F  L  C  *  F  L  Q  F  *  V  L  W  V  Y  N  S  *  *  R :   K  K  E  R  T  K  C  R  K  E  *  Q  L  R  I  F  *  T  T  S  W  T  L  F  L  R  V  S  *  N  T  K  L  R  H  F  F  K  T  K  V  K  A  L  L  V  L  N  S  I  G  Y  L  D  V  K  N  Q  S  T  T  V  *  V  E  A  N  :  R  L  I  A  C  C  G  E  T  R  K  F  Q  P  A  F  *  S  V  L  L  P  S  G  C  Y  S  S  G  L  T  T  I  F  F  H  F  C  A  L  V  C  P  L  V  *  S  R  S  F  C  *  K  M  L  L  G  *  *  T   : G  L  L  R  F  L  V  L  S  Y  L  K  T  S  S  S  I  L  P  R  E  L  A  L  N  *  T  M  V  W  A  S  F  K  M  L  P  W  A  V  I  *  N  N  S  *  W :   L  Y  *  A  C  G  L  L  V  *  S  E  P  G  A  T  S  *  L  F  C  I  L  :  V  S  S  L  L  T  L  Y  Q  C  Y  T  K  D  M  K  M  K  L  M  V  S  F  T  V  P  S  I  S  F  K  A  I  T  R  S  W  I  L  V  S  S  A  D  Y  R  E  A  A  S  G  E  R  R  L  N  K  S  S  I  Y  *  R  *  T  R  G  E  K  T  L  A  C  M  Q  R  S  N  M  K  L  V  F  V  L  R  Q  H  I  A  V  C  M  L  R  I  N  R  R  G  I  E  L  *  V  I  S  S  C  K  C  C  R  Y  F  D  *  S  L  A  F  E  N  K  L  N  F  A  E  </first_frame>
            <second_frame>  F  I  F  F  A  S  F  S  S  F  E  Y  F  G  F  I  I  L  D  K   : E  K  K  K  E  Q  N  A  G  R  N  N  S  *  E  S  F  E  Q  H  H  G  L  Y  F  *  G  *  A  E  T  Q  S  Y  V  I  F  S  R  R  K  *  K  L  C  *  C  S  I  Q  *  A  I  W  T  S  K  T  N  P  P  L  F  R  W  R  Q  I :   G  *  *  H  V  V  E  K  Q  E  N  F  S  R  R  F  N  Q  C  Y  C  H  L  G  A  I  R  V  A  *  L  Q  F  S  F  T  S  V  L  W  S  V  L  W  S  D  R  A  V  S  V  E  K  C  F  W  G  N  K  Q  :  V  S  Y  G  S  S  S  C  L  T  *  R  P  L  H  Q  Y  C  Q  E  N  W  H  *  I  K  P  W  F  G  L  P  S  R  C  C  L  G  R  *  S  E  T  I  R  S   : G  Y  T  E  L  V  G  C  W  Y  D  R  N  L  V  Q  L  L  D  C  S  V  Y  W :   F  H  R  C  S  H  S  T  S  A  I  R  K  I  *  R  *  S  *  W  F  R  L  Q  C  P  R  *  A  S  R  P  L  Q  E  A  G  F  W  C  P  Q  Q  T  T  A  R  Q  L  Q  G  K  E  G  *  I  N  L  Q  F  T  E  G  K  L  V  E  K  K  H  *  P  V  C  R  D  Q  I  *  N  S  F  S  C  L  G  N  T  L  L  Y  V  C  L  G  L  I  D  E  V  L  N  C  R  S  S  R  R  V  N  V  A  G  T  S  I  E  V  W  H  L  K  I  N  *  I  L  Q  K </second_frame>
            <third_frame>   L  F  S  L  L  V  S  P  V  L  S  T  L  G  L  *  F  L  I  K  :  K  K  R  K  N  K  M  P  E  G  I  T  A  E  N  L  L  N  N  I  M  D  S  I  S  E  G  E  L  K  H  K  A  T  S  F  F  Q  D  E  S  E  S  S  V  S  A  Q  F  N  R  L  F  G  R  Q  K  P  I  H  H  C  L  G  G  G  K   : S  A  D  S  M  L  W  R  N  K  K  I  S  A  G  V  L  I  S  A  T  A  I  W  V  L  F  E  W  L  N  Y  N  F  L  S  L  L  C  F  G  L  S  F  G  L  I  A  Q  F  L  L  K  N  A  S  G  V  I  N  R :   S  P  T  V  P  R  L  V  L  P  E  D  L  F  I  N  I  A  K  R  I  G  T  E  L  N  H  G  L  G  F  L  Q  D  A  A  L  G  G  N  L  K  Q  F  V  V  :  V  I  L  S  L  W  A  A  G  M  I  G  T  W  C  N  F  L  T  V  L  Y  I   : G  F  I  A  A  H  T  L  P  V  L  Y  E  R  Y  E  D  E  V  D  G  F  V  Y  S  A  L  D  K  L  Q  G  H  Y  K  K  L  D  S  G  V  L  S  R  L  P  R  G  S  F  R  G  K  K  V  E  *  I  F  N  L  L  K  V  N  S  W  R  K  N  I  S  L  Y  A  E  I  K  Y  E  T  R  F  R  A  *  A  T  H  C  C  M  Y  A  *  D  *  S  T  R  Y  *  T  V  G  H  L  V  V  *  M  L  Q  V  L  R  L  K  F  G  I  *  K  *  I  E  F  C  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31481" stop="31470"/>
                    <exon start="30243" stop="30042"/>
                    <exon start="29961" stop="29781"/>
                    <exon start="28734" stop="28596"/>
                    <exon start="28026" stop="27957"/>
                    <exon start="27558" stop="27389"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLIKKKRKNKMPEGITAENLLNNIMDSISEGELKHKATSFFQDESESSVSAQFNRLFGRQKPIHHCLGGGKSADSMLWRNKKISAGVLISATAIWVLFEWLNYNFLSLLCFGLSFGLIAQFLLKNASGVINRSPTVPRLVLPEDLFINIAKRIGTELNHGLGFLQDAALGGNLKQFVVVILSLWAAGMIGTWCNFLTVLYIGFIAAHTLPVLYERYEDEVDGFVYSALDKLQGHYKKLDSGVLSRLPRGSFRGKKVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="50831" PGL_stop="48517"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50831" e_stop="50554"/>
            <exon e_start="49619" e_stop="49518"/>
            <exon e_start="48740" e_stop="48517"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50831" e_stop="50554" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.923">
            <gDNA_intron_boundary i_start="50553" i_stop="49620" i_length="934"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49619" e_stop="49518" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49517" i_stop="48741" i_length="777"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48740" e_stop="48517" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50831" stop="50554"/>
              <exon start="49619" stop="49518"/>
              <exon start="48740" stop="48517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCATTCTGTATTATATCACCTTCACAACAGGTTGTCTCAGGGGAGTCAGGTCCAGAAATAATGAAAATAAAATTAAGGACAAAGCTACTAGAAGAATTGCAGGGACTGTTTCCCACAACAGTCATGCCTCCCGAAAAAAGATTGATCCATCTGGTTGAACAGGGGCTTGAATTTCAACTGGGATCTTGTTCTCTTCACAACTCATTAAGCAATGACATGTCATTGCTCACTGATCACCATTGTGGAATAGATAAGATTCCATCTCAGACTTTGCAG : ATATTAGAAGGACACAAAGATGAAGTCTGGTTTTTGGAGTTCTCTCATAACGGGAAGTGTTTGGCCTCGTCATCTGCTGATTGTTCAGTAATTATATGGGAG : GTGAAGTTGGATGGAAGGTTATGCTTGAAGCACAAAGTTATTGGTCATGAGGAGCCTGTGTGCTTTGTATCATGGAGCCCTGATGATAGTCAGCTTCTCACCTGTGGCCTGGAAGAGGTCGTTAGACTGTGGGATGTAGACTCCGGTGAGTGTATACGTCTTTATGAGAAAAATGGTCTTGGTTTTATTTCGTGTGGATGGGCTCCAGATGGGGAAAGGATATT</gDNA_template>
            <first_frame> F  H  S  V  L  Y  H  L  H  N  R  L  S  Q  G  S  Q  V  Q  K  *  *  K  *  N  *  G  Q  S  Y  *  K  N  C  R  D  C  F  P  Q  Q  S  C  L  P  K  K  D  *  S  I  W  L  N  R  G  L  N  F  N  W  D  L  V  L  F  T  T  H  *  A  M  T  C  H  C  S  L  I  T  I  V  E  *  I  R  F  H  L  R  L  C  R :   Y  *  K  D  T  K  M  K  S  G  F  W  S  S  L  I  T  G  S  V  W  P  R  H  L  L  I  V  Q  *  L  Y  G  R :   *  S  W  M  E  G  Y  A  *  S  T  K  L  L  V  M  R  S  L  C  A  L  Y  H  G  A  L  M  I  V  S  F  S  P  V  A  W  K  R  S  L  D  C  G  M  *  T  P  V  S  V  Y  V  F  M  R  K  M  V  L  V  L  F  R  V  D  G  L  Q  M  G  K  G  Y  </first_frame>
            <second_frame>  F  I  L  Y  Y  I  T  F  T  T  G  C  L  R  G  V  R  S  R  N  N  E  N  K  I  K  D  K  A  T  R  R  I  A  G  T  V  S  H  N  S  H  A  S  R  K  K  I  D  P  S  G  *  T  G  A  *  I  S  T  G  I  L  F  S  S  Q  L  I  K  Q  *  H  V  I  A  H  *  S  P  L  W  N  R  *  D  S  I  S  D  F  A   : D  I  R  R  T  Q  R  *  S  L  V  F  G  V  L  S  *  R  E  V  F  G  L  V  I  C  *  L  F  S  N  Y  M  G   : G  E  V  G  W  K  V  M  L  E  A  Q  S  Y  W  S  *  G  A  C  V  L  C  I  M  E  P  *  *  *  S  A  S  H  L  W  P  G  R  G  R  *  T  V  G  C  R  L  R  *  V  Y  T  S  L  *  E  K  W  S  W  F  Y  F  V  W  M  G  S  R  W  G  K  D  I </second_frame>
            <third_frame>   S  F  C  I  I  S  P  S  Q  Q  V  V  S  G  E  S  G  P  E  I  M  K  I  K  L  R  T  K  L  L  E  E  L  Q  G  L  F  P  T  T  V  M  P  P  E  K  R  L  I  H  L  V  E  Q  G  L  E  F  Q  L  G  S  C  S  L  H  N  S  L  S  N  D  M  S  L  L  T  D  H  H  C  G  I  D  K  I  P  S  Q  T  L  Q  :  I  L  E  G  H  K  D  E  V  W  F  L  E  F  S  H  N  G  K  C  L  A  S  S  S  A  D  C  S  V  I  I  W  E  :  V  K  L  D  G  R  L  C  L  K  H  K  V  I  G  H  E  E  P  V  C  F  V  S  W  S  P  D  D  S  Q  L  L  T  C  G  L  E  E  V  V  R  L  W  D  V  D  S  G  E  C  I  R  L  Y  E  K  N  G  L  G  F  I  S  C  G  W  A  P  D  G  E  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50829" stop="50554"/>
                    <exon start="49619" stop="49518"/>
                    <exon start="48740" stop="48519"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFCIISPSQQVVSGESGPEIMKIKLRTKLLEELQGLFPTTVMPPEKRLIHLVEQGLEFQLGSCSLHNSLSNDMSLLTDHHCGIDKIPSQTLQILEGHKDEVWFLEFSHNGKCLASSSADCSVIIWEVKLDGRLCLKHKVIGHEEPVCFVSWSPDDSQLLTCGLEEVVRLWDVDSGECIRLYEKNGLGFISCGWAPDGERI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="59430" PGL_stop="61093"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59430" e_stop="59834"/>
            <exon e_start="60207" e_stop="60325"/>
            <exon e_start="60497" e_stop="61093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.901" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59430" e_stop="59834" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.901" acc_prob="0.964">
            <gDNA_intron_boundary i_start="59835" i_stop="60206" i_length="372"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60207" e_stop="60325" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.980">
            <gDNA_intron_boundary i_start="60326" i_stop="60496" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="60497" e_stop="61093" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59430" stop="59834"/>
              <exon start="60207" stop="60325"/>
              <exon start="60497" stop="61093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326973" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAACTTGGTATTAGCAGGCTTGAACTTCTGGAAGTCTTAAATCTTACAAATCTGAATAGGTGTACCTTGGCATCGACACCTTCCCAGTTTCATTCTGTTAGGCTAGTGAATTTATCCCTGCAAGCTTTGTAACACTGAAGCAAATTATGAAGATATTTGTTATTTGTCTTCTATTTCATTTTTAAAGTGTTTGCAATTTTCTTTCTCTACAAATTCGCATTTATTTTCAGATTCAGTCTATACTCTATAGTGGATTCATGCCCAAGCATATTCTTTTTTCATGCCTTTTTCGGTAATTAAGGTTGAGAGTTTTTGCAGCTTCGCTTGAACAGTGATGGCCATATCACTGGCACTGAGTATTTGTCAGACCTTGTTGAGAAGGAACGTGAAGCTCATAAACATG : ATGTGCACAAAGAACATCATGAAGATTCAGACAAGATCCATCTACAGGGCATTGATGAAGAATCTCAGAATATGATCAAGAAGGTTAAGCAAGCATTGGCTGATGGGGAAGGATGCAGG : GTGTATGGAGTATTAGATGTCCAGCGGGTTGCTGGGAATTTCCATTTATCCGTTCATGGGTTGAACATTTTTGTTGCTCAAATGGTCAGCTCTGTTGATATTTTATATTTATAGATTTGATGAGAATACATATAACTGTTGGAAAGCATGCACTATTGCATTGAACTCTGTCCTATTGTAAGATATCTATCAGGTCAAATTGTGTAAGCAGTTGTGATCCTTAAAATTAGGGCGGTATAGTTGGAAGATGCTTAAAAGAGTTTGTTTAAGAAACTAGATCAATAACCCTCCCGATAGTGGGAGAGGTAGACAGTTCTTTCCGTCAGCTTCCAGTGTTCTATCAAGTAATATATTGGTGGTTCAAGTAAAGTGAAAGCTCTGATTCAATCAAACTTGCTACTTATTTTGAGCTTATGCATGACAAAAGGTTGATTGCTCTAAAGCTACTTTTCTGATTTTGCTTGTATTTTGATCTATGATAGTTTGTGAAAAAAAGTAGAGAGAAATTAGCAATACCATAGTAAGTAAGTTGTACAGTAAGTTTCTAGATAGTTTGTGAAACAAGTTTAGAGAAATTAGCAATACCATAGTTCCTAA</gDNA_template>
            <first_frame> F  N  L  V  L  A  G  L  N  F  W  K  S  *  I  L  Q  I  *  I  G  V  P  W  H  R  H  L  P  S  F  I  L  L  G  *  *  I  Y  P  C  K  L  C  N  T  E  A  N  Y  E  D  I  C  Y  L  S  S  I  S  F  L  K  C  L  Q  F  S  F  S  T  N  S  H  L  F  S  D  S  V  Y  T  L  *  W  I  H  A  Q  A  Y  S  F  F  M  P  F  S  V  I  K  V  E  S  F  C  S  F  A  *  T  V  M  A  I  S  L  A  L  S  I  C  Q  T  L  L  R  R  N  V  K  L  I  N  M  :  M  C  T  K  N  I  M  K  I  Q  T  R  S  I  Y  R  A  L  M  K  N  L  R  I  *  S  R  R  L  S  K  H  W  L  M  G  K  D  A  G :   C  M  E  Y  *  M  S  S  G  L  L  G  I  S  I  Y  P  F  M  G  *  T  F  L  L  L  K  W  S  A  L  L  I  F  Y  I  Y  R  F  D  E  N  T  Y  N  C  W  K  A  C  T  I  A  L  N  S  V  L  L  *  D  I  Y  Q  V  K  L  C  K  Q  L  *  S  L  K  L  G  R  Y  S  W  K  M  L  K  R  V  C  L  R  N  *  I  N  N  P  P  D  S  G  R  G  R  Q  F  F  P  S  A  S  S  V  L  S  S  N  I  L  V  V  Q  V  K  *  K  L  *  F  N  Q  T  C  Y  L  F  *  A  Y  A  *  Q  K  V  D  C  S  K  A  T  F  L  I  L  L  V  F  *  S  M  I  V  C  E  K  K  *  R  E  I  S  N  T  I  V  S  K  L  Y  S  K  F  L  D  S  L  *  N  K  F  R  E  I  S  N  T  I  V  P   </first_frame>
            <second_frame>  L  T  W  Y  *  Q  A  *  T  S  G  S  L  K  S  Y  K  S  E  *  V  Y  L  G  I  D  T  F  P  V  S  F  C  *  A  S  E  F  I  P  A  S  F  V  T  L  K  Q  I  M  K  I  F  V  I  C  L  L  F  H  F  *  S  V  C  N  F  L  S  L  Q  I  R  I  Y  F  Q  I  Q  S  I  L  Y  S  G  F  M  P  K  H  I  L  F  S  C  L  F  R  *  L  R  L  R  V  F  A  A  S  L  E  Q  *  W  P  Y  H  W  H  *  V  F  V  R  P  C  *  E  G  T  *  S  S  *  T  * :   C  A  Q  R  T  S  *  R  F  R  Q  D  P  S  T  G  H  *  *  R  I  S  E  Y  D  Q  E  G  *  A  S  I  G  *  W  G  R  M  Q   : G  V  W  S  I  R  C  P  A  G  C  W  E  F  P  F  I  R  S  W  V  E  H  F  C  C  S  N  G  Q  L  C  *  Y  F  I  F  I  D  L  M  R  I  H  I  T  V  G  K  H  A  L  L  H  *  T  L  S  Y  C  K  I  S  I  R  S  N  C  V  S  S  C  D  P  *  N  *  G  G  I  V  G  R  C  L  K  E  F  V  *  E  T  R  S  I  T  L  P  I  V  G  E  V  D  S  S  F  R  Q  L  P  V  F  Y  Q  V  I  Y  W  W  F  K  *  S  E  S  S  D  S  I  K  L  A  T  Y  F  E  L  M  H  D  K  R  L  I  A  L  K  L  L  F  *  F  C  L  Y  F  D  L  *  *  F  V  K  K  S  R  E  K  L  A  I  P  *  *  V  S  C  T  V  S  F  *  I  V  C  E  T  S  L  E  K  L  A  I  P  *  F  L  </second_frame>
            <third_frame>   *  L  G  I  S  R  L  E  L  L  E  V  L  N  L  T  N  L  N  R  C  T  L  A  S  T  P  S  Q  F  H  S  V  R  L  V  N  L  S  L  Q  A  L  *  H  *  S  K  L  *  R  Y  L  L  F  V  F  Y  F  I  F  K  V  F  A  I  F  F  L  Y  K  F  A  F  I  F  R  F  S  L  Y  S  I  V  D  S  C  P  S  I  F  F  F  H  A  F  F  G  N  *  G  *  E  F  L  Q  L  R  L  N  S  D  G  H  I  T  G  T  E  Y  L  S  D  L  V  E  K  E  R  E  A  H  K  H   : D  V  H  K  E  H  H  E  D  S  D  K  I  H  L  Q  G  I  D  E  E  S  Q  N  M  I  K  K  V  K  Q  A  L  A  D  G  E  G  C  R  :  V  Y  G  V  L  D  V  Q  R  V  A  G  N  F  H  L  S  V  H  G  L  N  I  F  V  A  Q  M  V  S  S  V  D  I  L  Y  L  *  I  *  *  E  Y  I  *  L  L  E  S  M  H  Y  C  I  E  L  C  P  I  V  R  Y  L  S  G  Q  I  V  *  A  V  V  I  L  K  I  R  A  V  *  L  E  D  A  *  K  S  L  F  K  K  L  D  Q  *  P  S  R  *  W  E  R  *  T  V  L  S  V  S  F  Q  C  S  I  K  *  Y  I  G  G  S  S  K  V  K  A  L  I  Q  S  N  L  L  L  I  L  S  L  C  M  T  K  G  *  L  L  *  S  Y  F  S  D  F  A  C  I  L  I  Y  D  S  L  *  K  K  V  E  R  N  *  Q  Y  H  S  K  *  V  V  Q  *  V  S  R  *  F  V  K  Q  V  *  R  N  *  Q  Y  H  S  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0073O10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59738" stop="59834"/>
                    <exon start="60207" stop="60325"/>
                    <exon start="60497" stop="60610"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFLQLRLNSDGHITGTEYLSDLVEKEREAHKHDVHKEHHEDSDKIHLQGIDEESQNMIKKVKQALADGEGCRVYGVLDVQRVAGNFHLSVHGLNIFVAQMVSSVDILYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 16 chains have been computed
$ 
$ memory statistics:
$ 10376 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2075 bytes was the average size of a spliced alignment
$ 10648 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2129 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 17 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-07 09:16:05
-->
