<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-25 20:10:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325892" ref_strand="+" ref_description="SGN-U325892        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, identical to hypothetical protein GB:AAD46040 GI:5668814 from (Arabidopsis thaliana) | chr1:17397958-17399693 REVERSE | Aliases: T3F24.12(evalue: 2e-70, score=263) genbank/nr: gi|18401719|ref|NP_564506.1| expressed protein [Arabidopsis thaliana] gi|25091506|sp|Q9SX77|UMP6_ARATH Unknown protein At1g47420, mitochondrial precursor gi|25405206|pir||H96514 hypothetical protein F16N3.26 [imported] - Arabidopsis thaliana gi|5668814|gb|AAD46040.1| ESTs gb|H36253 and gb|AA04251 come from this gene. [Arabidopsis thaliana] gi|12744995|gb|AAK06877.1| unknown protein [Arabidopsis thaliana] gi|14334512|gb|AAK59453.1| unknown protein [Arabidopsis thaliana] gi|15450966|gb|AAK96754.1| Unknown protein [Arabidopsis thaliana] gi|17104551|gb|AAL34164.1| unknown protein [Arabidopsis thaliana] gi|21536627|gb|AAM60959.1| unknown [Arabidopsis thaliana] gi|23198274|gb|AAN15664.1| Unknown protein [Arabidopsis thaliana](evalue: 1e-68, score=263)">
      <seq>ggagcgcaaaacaaaaagggtgggtgtgagtgactacaaaacttgggaggagttgtaaaaagttcattgggactcttgaaaattttcaatctgctcatcaagtaaagcaaaaacttaccataaaatgcagaaattgaagctgatacgatcactctatcgttctgtatatcgcagatcttcagctttctcagtttctaccgccgcagctgccgccgtcaaccaccacttccatcgggaccttcatttttcagcttctcctagaaccccttttcgtgaattgcgacatcctttgacaaaggcaataggaagcacacgttcttttagtgaggatgtgaccgacatgcctgacatagaagatttggagatcaaacgagcttttaaggacttgatggctgcaagctgggatgagctcccaaatgcagttgttggtgatgcagagaatgcattgacaaaaagtactgatgacaaagctggtcaggaagccttgattaatgttttccgtgcagcagaggcagtggaggagttcacaggaattctcacatctctgaaaatggagatggatgacgcgattggtttaagtggtgagaatgtgaagcctatgtcaaaagaattctctgaagcattccaaacaatacttcaacgttacaacacttacttaagtgcttttgggttagaagaggtatacttgaagaagaaagtggagatggaactagggacaaagatgatacacttgaaaatgagatgcagtggccttgattccgaatggggaaaggttacagtacttgggacttcaggactggctggttcctatgttgagcaaagagcataagccttcaatgatggctgaaaagtcagaagtgttttcgccttcaagtcacttacgtaacattttcctggaaaaagaaaaggaagttttagataatacaggatgatattgatgtgatccgttaaattgcactcttctttcgcaagttttataatgtgatagcagcaatatgtagttgatactaatcctaataacttcttcaaggagacagtttcctgagtattcagaatgagagtgttttatgtcaattgattccggtttactgatgaatttggcgctgtgatttaatttttcttgattgattattggcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0012E19.1" temp_strand="-" temp_description="C12HBa0012E19.1  AC232945.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0012E19*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4193" stop="113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3895" g_stop="3621" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3620" i_stop="2696" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.745" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2695" g_stop="2385" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="586" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2384" i_stop="2308" i_length="77">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2307" g_stop="2122" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="772" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2121" i_stop="784" i_length="1338">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="783" g_stop="421" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="1135" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1137" polyA_stop="1155"/>
      <MATCH_line gen_id="C12HBa0012E19.1" gen_strand="-" ref_id="SGN-U325892" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1135</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0012E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3895" e_stop="3621"/>
          <exon e_start="2695" e_stop="2385"/>
          <exon e_start="2307" e_stop="2122"/>
          <exon e_start="783" e_stop="421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCGCAAAACAAAAAGGGTGGGTGTGAGTGACTACAAAACTTGGGAGGAGTTGTAAAAAGTTCATTGGGACTCTTGAAAATTTTCAATCTGCTCATCAAGTAAAGCAAAAACTTACCATAAAATGCAGAAATTGAAGCTGATACGATCACTCTATCGTTCTGTATATCGCAGATCTTCAGCTTTCTCAGTTTCTACCGCCGCAGCTGCCGCCGTCAACCACCACTTCCATCGGGACCTTCATTTTTCAGCTTCTCCTAGAACCCCTTTTCGTGGTACTACCATTTTCATCTGTTTTTCTTATATTTAGTTTGGTTTTGCTTATATTCACATGTTCTTAGACATACCCAATTTGAAAGATTGTATTTTTCAGCTTCTCCTAGAACCCCTTTTCGTGTTACTTGCATTTTTACATGTTTTTCGTATATTTACTGCATATATTCCCATGTTTTTGGACATACCCAATTTGAAAGACCGTGTTTTTATTCTGCTCTAATTGGAAATGTCTTGTTATTTGACAAGTTAGAGTTTATAGTCTGAATGGATTTTGAGGATTTATATAGTAGCTGATCAGACTTGTTTGAGATTGAGACATGTCCAAATGGATGTTGAGGATTCGTACTAGTGGTGGAATCAAGACTTGTTCTGATTGCAGCAGGCATATTCTTGCCTACTACGAGTGCTAATTGAGCTTATAAAGAAGGTAGCTTTTACTAGTTTCTAAGGCAAATGAATTTCTGACAATGGTATTGTCCCACTGCAAAAACCTCAAATGAATTTCGGAGGATGACACTGTCCCACTGCAAAAACATTAGTCTTGGTAGTGTAGTGAGCATGGTTTTGGTAAATGTTTCATTTTACTCACCCTGTCATCGGTATGGGCATGTGTAAATGTACTAATGCTGGCTCCTTGGTTGGATTCTGGAGAACAATCGAACATTACTTAGATTGAGGGCTAAAACAAACTATTTAGGATTTTAATTGAGTAGAAAGGTCCTCAATCATTACGTTTTCCAACAAACTATTTAGGATTTTAATTGAGTAGAAAGGTCCTCAATGATTACGTTTTCCTTAACAAGTTCTGTATCTGCTAATCATGAAGCAGCTTAATGATCATATGTGGAGGTAGATGGTACTGCTTTTAATTTTTTTGGTCTTACTTCAATAATGCGAAACTAAATGGATTTTTCTACACTCTAGAATTGCGACATCCTTTGACAAAGGCAATAGGAAGCACACGTTCTTTTAGTGAGGATGTGACCGACATGCCTGACATAGAAGATTTGGAGATCAAACGAGCTTTTAAGGACTTGATGGCTGCAAGCTGGGATGAGCTCCCAAATGCAGTTGTTGGTGATGCAGAGAATGCATTGACAAAAAGTACTGATGACAAAGCTGGTCAGGAAGCCTTGATTAATGTTTTCCGTGCAGCAGAGGCAGTGGAGGAGTTCACAGGAATTCTCACATCTCTGAAAATGGAGATGGATGACGCGATTGGTTTAAGTGGTGAGGTAAGTGGAGTTTAAAACTAGGGACTTCGTTCATATTTTCTCAAAATCTTGCTGTTAGATTATTTATATTGTTGCAGAATGTGAAGCCTATGTCAAAAGAATTCTCTGAAGCATTCCAAACAATACTTCAACGTTACAACACTTACTTAAGTGCTTTTGGGTTAGAAGAGGTATACTTGAAGAAGAAAGTGGAGATGGAACTAGGGACAAAGATGATACACTTGAAAATGAGATGCAGTGGCCTTGATTCCGAATGGGGAAAGGTACAATCTACATTTCAGCAAAGTTGGTTCCACATATTTCATTTTTTCTATGAATAGGTTATGATTTCATCACAAGCAATACCTGCAACCCAAATTACTTTTCTCTTGTATTAGGGCATTAAAGTGGCAGAGGGAGAGGAGAGGACACTCTGAGTAATTTAAGAAAGTCAAATAATTCTTCTAAATTTGTGGTCAAGTAATCCTTTTCATTTACCTTTTGGTTTGTTTCAAAAAATTGATAGTCAAACTTTTATTCTGTATTAGCCTTTTATGATTCATCCTCTGTGCCTTCAAATTATGTTCTGCGTATGAAGTTACTGTCCAATAATTAGTTTAGAAACCTCTGCCAACTTGAGATTATATTTTGATAGAGTGGGGTTCAGTTTCTTCTGGAAAATTAATTTCTCTATTGTTCTTACGCTTAGTCTATTGACCATTCATTTTTCAAAACCTTCCAAATTTGTGTTGCATTTCACTATTCTAACTAGTTCTGCAATTCCTGAACCCTGGCCAAAAACTTATTTTTATCAGATTATAACTTTTTTTATGTAGAATACATTAAGTATTTTGTTGTGATACAAAATTTACCATTCTGATGGAAATAAACTAATTGAAGGGGAGCCTAGGAGCAATGGTAAAGTTGTTTCCGTGTGACCAATAGGTCACGGGTTTGAGCTGTGGAAGTTCTCATTAATGCTTGCAGTAGGGTAGGGTATCTACATTACATCCCTTGGTGTGCGGTCCATCCTGGCGCCTTGCATGAACGTGGAATGCTTTTTCCACCGGATTACCCTTTTTAAATGGAAATAAACTAATGTGGTTGTAAATTTTGATTTTATTCACTTTCTTGCAATAGATGTTTCAAATACAAACTTCCATCATACGTCCTTGAGTACCACTAATGAAAATGTTTCTACAAAATACAATATACGATATGGGATCTCTTAAAGATATTACTGTTAAGAGTCCCACATCAGTAGGTTTAGGAAATTTGGTTGCTTTTTATGGTCTTGAACAATTCTCATCTTTTGAACGCTTTTGGGATTAAGTTAGGCCCAATGTCCACTTTTTTTGTCATGGTATCAGCGTGCCCATCCCAATTCATTGTTTTACCCATCTTAGGCCTCCATTTTATATTGGTAACGCTCCAGATGTTTAGTCCTGGTCACGCGTCTCATATCAGTGCGTTTTAGGAAGTCGGTCTCTTTATATGGTATTGGGTAATCCTCATCTCTTAAGCTAGCCTTTTGGTTTGAGTTATGTGCAATGTCTATTTCGTTATCAATTACTTTTTATGAGGATTTGTTCTCATAGTGATTTCTGGCTTTCTTACTCCAGGTTACAGTACTTGGGACTTCAGGACTGGCTGGTTCCTATGTTGAGCAAAGAGCATAAGCCTTCAATGATGGCTGAAAAGTCAGAAGTGTTTTCGCCTTCAAGTCACTTACGTAACATTTTCCTGGAAAAAGAAAAGGAAGTTTTAGATAATACAGGATGATATTGATGTGATCCGTTAAATTGCACTCTTCTTTCGCAAGTTTTATAATGTGATAGCAGCAATATGTAGTTGATACTAATCCTAATAACTTCTTCAAGGAGACAGTTTCCTGAGTATTCAGAATGAGAGTGTTTTATGTCAATTGATTCCGGTTTACTGATGAATTTGGCGCTGTGATTTAATTTTTCTTGATTGATTATTGG</genome_strand>
        <mrna_strand>GGAGCGCAAAACAAAAAGGGTGGGTGTGAGTGACTACAAAACTTGGGAGGAGTTGTAAAAAGTTCATTGGGACTCTTGAAAATTTTCAATCTGCTCATCAAGTAAAGCAAAAACTTACCATAAAATGCAGAAATTGAAGCTGATACGATCACTCTATCGTTCTGTATATCGCAGATCTTCAGCTTTCTCAGTTTCTACCGCCGCAGCTGCCGCCGTCAACCACCACTTCCATCGGGACCTTCATTTTTCAGCTTCTCCTAGAACCCCTTTTCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCGACATCCTTTGACAAAGGCAATAGGAAGCACACGTTCTTTTAGTGAGGATGTGACCGACATGCCTGACATAGAAGATTTGGAGATCAAACGAGCTTTTAAGGACTTGATGGCTGCAAGCTGGGATGAGCTCCCAAATGCAGTTGTTGGTGATGCAGAGAATGCATTGACAAAAAGTACTGATGACAAAGCTGGTCAGGAAGCCTTGATTAATGTTTTCCGTGCAGCAGAGGCAGTGGAGGAGTTCACAGGAATTCTCACATCTCTGAAAATGGAGATGGATGACGCGATTGGTTTAAGTGGTGAG.............................................................................AATGTGAAGCCTATGTCAAAAGAATTCTCTGAAGCATTCCAAACAATACTTCAACGTTACAACACTTACTTAAGTGCTTTTGGGTTAGAAGAGGTATACTTGAAGAAGAAAGTGGAGATGGAACTAGGGACAAAGATGATACACTTGAAAATGAGATGCAGTGGCCTTGATTCCGAATGGGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAGTACTTGGGACTTCAGGACTGGCTGGTTCCTATGTTGAGCAAAGAGCATAAGCCTTCAATGATGGCTGAAAAGTCAGAAGTGTTTTCGCCTTCAAGTCACTTACGTAACATTTTCCTGGAAAAAGAAAAGGAAGTTTTAGATAATACAGGATGATATTGATGTGATCCGTTAAATTGCACTCTTCTTTCGCAAGTTTTATAATGTGATAGCAGCAATATGTAGTTGATACTAATCCTAATAACTTCTTCAAGGAGACAGTTTCCTGAGTATTCAGAATGAGAGTGTTTTATGTCAATTGATTCCGGTTTACTGATGAATTTGGCGCTGTGATTTAATTTTTCTTGATTGATTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343214" ref_strand="+" ref_description="SGN-U343214        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to nodulation protein-related [Arabidopsis thaliana] (TAIR:At3g50620.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:XP_479317.1) | chr2:6856637-6859225 FORWARD | Aliases: F9O13.28(evalue: 2e-62, score=235) genbank/nr: gi|45752690|gb|AAS76243.1| At2g15730 [Arabidopsis thaliana] >gi|40823013|gb|AAR92253.1| At2g15730 [Arabidopsis thaliana] (evalue: 1e-60, score=235)">
      <seq>tttctttctccttattttcctctaaaaactcttacaaggtagatgaacaaatattcaaccaaattttttttttaaaaataaataaataaattattctttcatttcatatggagattcctaaaatatggaaacctcaggatttatttgtgattaaatcacctaaacaatctttgagatgggttcttttagtatttgctgtgctttgtggaatttatatattatcaatgtgtataaatcaaacaagtaattattttttacaagctaaatcactaagtattcatgtgattaatagacataattgtcattatcctatttttcaagaagaagatattcattacttgcattttccaaagcctcaaactttttccagggaggaatgtgcttgcaatcctgttcgatttttcgcgattttatcgatgcagagatcagggagtggatggtttgagacattgttaaatagccatatgaatgtgagttctaatggagaaatttttggtgcaaaatcaaggaggaccaatgcttcagtaatattggaaattatggataatgtctttaatcttgattggattagtagttcatcaaagaatgaatgtacagctgcaattggatttaagtggatgcttaatcagggagctttggagtatcatgaggagattgtggattacttcaacagaagaggtgtatctgcaatatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0012E19.1" temp_strand="+" temp_description="C12HBa0012E19.1  AC232945.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0012E19*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="7437" stop="9930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7737" g_stop="7873" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7874" i_stop="7981" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7982" g_stop="8214" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="370" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8215" i_stop="8792" i_length="578">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8793" g_stop="9051" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="629" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9052" i_stop="9562" i_length="511">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9563" g_stop="9630" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="697" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0012E19.1" gen_strand="+" ref_id="SGN-U343214" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0012E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7737" e_stop="7873"/>
          <exon e_start="7982" e_stop="8214"/>
          <exon e_start="8793" e_stop="9051"/>
          <exon e_start="9563" e_stop="9630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCTCCTTATTTTCCTCTAAAAACTCTTACAAGGTAGATGAACAAATATTCAACCAAATTTTTTTTTTAAAAATAAATAAATAAATTATTCTTTCATTTCATATGGAGATTCCTAAAATATGGAAACCTCAGGTTAGTTTCTTAATCTAATTTTTATTAATTATATTGTTTGATTTAATTTTAAGTACTTAAATAACTTGTGTATGATTCTCGTTTTTTTTTTTTTTTTGTGATTTTCAGGATTTATTTGTGATTAAATCACCTAAACAATCTTTGAGATTGGTTCTTTTAGTATTTGCTGTGCTTTGTGGAATTTATATATTATCAATGTGTATAAATCAAACAAGTAATTATTTTTTACAAGCTAAATCACTAAGTATTCATGTGATTAATAGACATAATTGTCATTATCCTATTTTTCAAGAAGAAGATATTCATTACTTGCATTTTCCAAAGCCTCAAACTTTTTCCAGGTACTTCTAAATATATATATATATACTGATCAGACTCTTCAAAAATATCGTTACATTACTTACGTCAGATCCTTCGAAAAAATACTGTACTACTTTTGAAAGATCCGACACGTATTCCATATGACATTTTTGAAGAGTCTGAACAACATAGATTATTCTCCTAGTTTTAGGCTTACGTTGTTCAGACTCTTCAAAATATCGATTCGCGCCATGTTTGACATTTTTGAAGAATCTGAGCAGAAAATATCGATTCGTACCATGTTTGATCTTTTTTGAAGAGTCTGAACGACATAGATTAATCCTCTTTATGGTTTTAGCATTGCGTTGCTCGGACTCTTCAAAATATCGATTCGTACCATGTTTGACATTTTTGAAGAAATCTGAGCAACATAGATTGTTCCTCCTTATGGTTTTAGGATATATTGTTCGGACTCTTCAAAATGTTGATTAGTCTCGATTCTGAAGGATCTGACACGGGTGCGACAATAGTTTTGAAGAGTCGGAAGAGGAGAGGTTTTAGTATAGAGTTAGATGGATTGAATTGGACTAAATGACATGTTTTTTTAATTGAATTGTAGGGAGGAATGTGCTTGCAATCCTGTTCGATTTTTCGCGATTTTATCGATGCAGAGATCAGGGAGTGGATGGTTTGAGACATTGTTAAATAGCCATATGAATGTGAGTTCTAATGGAGAAATTTTTGGTGCAAAATCAAGGAGGACCAATGCTTCAGTAATATTGGAAATTATGGATAATGTCTTTAATCTTGATTGGATTAGTAGTTCATCAAAGAATGAATGTACAGCTGCAATTGGATTTAAGTGGATGCTTAATCAGGTAATTAGTACTAATCCTATTTCAATTGATGATGTTTCGTCTTCGATAATACAGTTTGTGCATACTTCGACTATGTTATTATTAGTCCACCAAAACTAGGGCAGATGGAAAAAATCACCCCAGCTAGCGTTTTTTGCTTTTGCTGAGATTCTAGTGATATATATATATATATAGTTATCAAATTACCCTCCTCTGTTTCATCGAGTTTAACGTCATCAACCACTACATTAGCCTTTCTCGGATGGTAAAAGATGTTCATATCGTAGTCTCAAATTCAACTTTTTCCGTTAAATGAACCTTAGGTCTAATTCAACTCTGAAAGTTAGCTTAAGAAGGGAGGATTGATCAAGTTCGTATAAGCAGATCACCAGTCCGTTAGACATAAAGACATGATTAGGTTCACAAATCTCGCTGATTAACTCTGTTTTTAATCGTATTTTCTTCGTTTAGAGGTGCATTAGTTGACGATTTTTTCGATGTTTTCAACTTGTTGATGTGTATGAACTTGAAGGGAGCTTTGGAGTATCATGAGGAGATTGTGGATTACTTCAACAGAAGAGGTGTATCTGCAATATTTCT</genome_strand>
        <mrna_strand>TTTCTTTCTCCTTATTTTCCTCTAAAAACTCTTACAAGGTAGATGAACAAATATTCAACCAAATTTTTTTTTTAAAAATAAATAAATAAATTATTCTTTCATTTCATATGGAGATTCCTAAAATATGGAAACCTCAG............................................................................................................GATTTATTTGTGATTAAATCACCTAAACAATCTTTGAGATGGGTTCTTTTAGTATTTGCTGTGCTTTGTGGAATTTATATATTATCAATGTGTATAAATCAAACAAGTAATTATTTTTTACAAGCTAAATCACTAAGTATTCATGTGATTAATAGACATAATTGTCATTATCCTATTTTTCAAGAAGAAGATATTCATTACTTGCATTTTCCAAAGCCTCAAACTTTTTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAATGTGCTTGCAATCCTGTTCGATTTTTCGCGATTTTATCGATGCAGAGATCAGGGAGTGGATGGTTTGAGACATTGTTAAATAGCCATATGAATGTGAGTTCTAATGGAGAAATTTTTGGTGCAAAATCAAGGAGGACCAATGCTTCAGTAATATTGGAAATTATGGATAATGTCTTTAATCTTGATTGGATTAGTAGTTCATCAAAGAATGAATGTACAGCTGCAATTGGATTTAAGTGGATGCTTAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTTGGAGTATCATGAGGAGATTGTGGATTACTTCAACAGAAGAGGTGTATCTGCAATATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329714" ref_strand="+" ref_description="SGN-U329714        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to nodulation protein-related [Arabidopsis thaliana] (TAIR:At3g50620.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:XP_479317.1) | chr2:6856637-6859225 FORWARD | Aliases: F9O13.28(evalue: 1e-15, score=78.2) genbank/nr: gi|45752690|gb|AAS76243.1| At2g15730 [Arabidopsis thaliana] >gi|40823013|gb|AAR92253.1| At2g15730 [Arabidopsis thaliana] (evalue: 1e-13, score=78.2)">
      <seq>gcatgtttccttccatcatatcaaacacattgtaaatcgatgtagctttgatcctttcataaacgttggctcatccgtgtcaaccctcgaaaaatgcatatttgacaccatacacacggcaatatttttgaagagtcagagaacgggagaaggaggggacggaaggccttacctcatacggagaatgtgtatgcgatttatgtgttccattcaacggtttagcatctttatcgtacgagttagcgagcatcgagatcaacctgcgtagcagatttcttctaaacagaaatattgcagagacacctcttctgttgaagtaatccgcaatctcctcatgatactccaaagctcccttcaagttcatacacatcaacaagttgaaaacatcgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0012E19.1" temp_strand="-" temp_description="C12HBa0012E19.1  AC232945.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0012E19*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="10214" stop="9220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9914" g_stop="9520" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0012E19.1" gen_strand="-" ref_id="SGN-U329714" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0012E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9914" e_stop="9520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGTTTCCTTCCATCATATCAAACACATTGTAAATCGATGTAGCTTTGATCCTTTCATAAACGTTGGCTCATCCGTGTCAACCCTCGAAAAATGCATATTTGACACCATACACACGACAATATTTTTGAAGAGTCAGAGAACGGGAGAAGGAGGGGACGGAAGGCCTTACCTCATACGGAGAATGTGTATGCGATTTATGTGTTCCATTCAACGGTTTAGCATCTTTATCGTACGAGTTAGCGAGCAACGAGATCAACCTGCGTAGCAGATTTCTTCTAAACAGAAATATTGCAGATACACCTCTTCTGTTGAAGTAATCCACAATCTCCTCATGATACTCCAAAGCTCCCTTCAAGTTCATACACATCAACAAGTTGAAAACATCGAAAAAA</genome_strand>
        <mrna_strand>GCATGTTTCCTTCCATCATATCAAACACATTGTAAATCGATGTAGCTTTGATCCTTTCATAAACGTTGGCTCATCCGTGTCAACCCTCGAAAAATGCATATTTGACACCATACACACGGCAATATTTTTGAAGAGTCAGAGAACGGGAGAAGGAGGGGACGGAAGGCCTTACCTCATACGGAGAATGTGTATGCGATTTATGTGTTCCATTCAACGGTTTAGCATCTTTATCGTACGAGTTAGCGAGCATCGAGATCAACCTGCGTAGCAGATTTCTTCTAAACAGAAATATTGCAGAGACACCTCTTCTGTTGAAGTAATCCGCAATCTCCTCATGATACTCCAAAGCTCCCTTCAAGTTCATACACATCAACAAGTTGAAAACATCGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340643" ref_strand="+" ref_description="SGN-U340643        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase | chr4:7093536-7098468 REVERSE | Aliases: T26M18.10, T26M18_10(evalue: 1e-105, score=372) genbank/nr: gi|15234309|ref|NP_192917.1| calcineurin-like phosphoesterase family [Arabidopsis thaliana] gi|7487451|pir||T09339 hypothetical protein T26M18.10 - Arabidopsis thaliana gi|5002515|emb|CAB44318.1| putative protein [Arabidopsis thaliana] gi|7267880|emb|CAB78223.1| putative protein [Arabidopsis thaliana](evalue: 8e-104, score=372)">
      <seq>tccaaggtgccttggaaaaagaaagtggtaattgggattcttcatgtgtctgcacacctagctgcagctgtgattcttatgctcttgctcgaattaggcattgagacatgtattcgccataaactacttgcaacttctggttatcatactttatatgaatggtacaaatcagtggagagtgaacattttccagacccaacgggtcttaaggaacgaattgaacactggacatttggcctttatccggcatgtattaaatatctcatgtctgcttttgatgttcctgaggtaatggcagttactaggaatactatctgcaagaatgggatggattcactatctcgagggggtgctgtaatttattatgcatccgtcttcctttatttttgggtcttttcaactccggtggtttctttggtattcggaagctacctatacatttgcattaactggcttcatatacatttcgacgaagccttttcatcacttcgtattgctaactacaagtcatttacacggtttcatatcaacaacaaaggcgatcttgaagtttttacccttgcagttgataaggttcccaaagactggaaactagatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0012E19.1" temp_strand="-" temp_description="C12HBa0012E19.1  AC232945.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0012E19*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="13106" stop="11689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12806" g_stop="12668" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12667" i_stop="12501" i_length="167">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.753" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12500" g_stop="12352" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="288" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12351" i_stop="12276" i_length="76">
            <donor d_prob="0.725" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12275" g_stop="11991" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="573" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11990" i_stop="11889" i_length="102">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11888" g_stop="11863" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="599" r_length="26" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0012E19.1" gen_strand="-" ref_id="SGN-U340643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0012E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12806" e_stop="12668"/>
          <exon e_start="12500" e_stop="12352"/>
          <exon e_start="12275" e_stop="11991"/>
          <exon e_start="11888" e_stop="11863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGGTGCCTTGGAAAAAGAAAGTGGTAATTGGGATTCTTCATGTGTCTGCACACCTAGCTGCAGCTGTGATTCTTATGCTCTTGCTCGAATTAGGCATTGAGACATGTATTCGCCATAAACTACTTGCAACTTCTGGTGAGATTTTGCATTTTGTTTCTATTTTGTGATCGTCTTTGAGTGTGTTTTTCCATGTCCGGTTGGTCAAATTTTCGTTACCCGAAATGTTTTTAGCACCGATTTCTTTGTTTCATGTTTTTGCATCTATCTATTTCCTTTGCTAACTACTGAATGCTGCAATCCAGGTTATCATACTTTATATGAATGGTACAAATCAGTGGAGAGTGAACATTTTCCAGACCCAACGGGTCTTAAGGAACGAATTGAACACTGGACATTTGGCCTTTATCCGGCATGTATTAAATATCTCATGTCTGCTTTTGATGTTCCTGAGGTAAGAATTCTGCCCGACGAGAGTATTGCTTTGTGACGACTCAAATCGTTTAATTATATCTTATGCATGTTTTTAGGTAATGGCAGTTACTAGGAATACTATCTGCAAGAATGGGATGGATTCACTATCTCGAGGGGGTGCTGTAATTTATTATGCATCCGTCTTCCTTTATTTTTGGGTCTTTTCAACTCCGGTGGTTTCTTTGGTATTCGGAAGCTACCTATACATTTGCATTAACTGGCTTCATATACATTTCGACGAAGCCTTTTCATCACTTCGTATTGCTAACTACAAGTCATTTACACGGTTTCATATCAACAACAAAGGCGATCTTGAAGTTTTTACCCTTGCAGTTGATAAGGTATTTTGTCGCTTCTCCCCTGTGATACTAAAGGTCAAGTGCATCATCGAAAGTTGGACTCGAGCTGTTTACATTCCTCTAATAATATCTCTCAATTTGTAGGTTCCGAAAGAGTGGAAACTAGATCC</genome_strand>
        <mrna_strand>TCCAAGGTGCCTTGGAAAAAGAAAGTGGTAATTGGGATTCTTCATGTGTCTGCACACCTAGCTGCAGCTGTGATTCTTATGCTCTTGCTCGAATTAGGCATTGAGACATGTATTCGCCATAAACTACTTGCAACTTCTG.......................................................................................................................................................................GTTATCATACTTTATATGAATGGTACAAATCAGTGGAGAGTGAACATTTTCCAGACCCAACGGGTCTTAAGGAACGAATTGAACACTGGACATTTGGCCTTTATCCGGCATGTATTAAATATCTCATGTCTGCTTTTGATGTTCCTGAG............................................................................GTAATGGCAGTTACTAGGAATACTATCTGCAAGAATGGGATGGATTCACTATCTCGAGGGGGTGCTGTAATTTATTATGCATCCGTCTTCCTTTATTTTTGGGTCTTTTCAACTCCGGTGGTTTCTTTGGTATTCGGAAGCTACCTATACATTTGCATTAACTGGCTTCATATACATTTCGACGAAGCCTTTTCATCACTTCGTATTGCTAACTACAAGTCATTTACACGGTTTCATATCAACAACAAAGGCGATCTTGAAGTTTTTACCCTTGCAGTTGATAAG......................................................................................................GTTCCCAAAGACTGGAAACTAGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345114" ref_strand="+" ref_description="SGN-U345114        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase | chr4:12055039-12059619 FORWARD | Aliases: F7H19.181, F7H19_181(evalue: 9e-60, score=227) genbank/nr: gi|15235897|ref|NP_194031.1| calcineurin-like phosphoesterase family [Arabidopsis thaliana] gi|25407588|pir||G85263 hypothetical protein AT4g23000 [imported] - Arabidopsis thaliana gi|5139333|emb|CAB45564.1| hypothetical protein [Arabidopsis thaliana] gi|7269147|emb|CAB79255.1| hypothetical protein [Arabidopsis thaliana](evalue: 7e-58, score=227)">
      <seq>ttccgtgaaaaaaaaggtttcttgcagacatcctcacataataaatgttgctgagtcggttccttaatccaaacatatatttatattccatatttaagcagacccaagttgctgtttttgctgtctgtctttctatttctgtattggcttttgtttcttaaattcagttgtctcttgggatctagaattaatcagctataactcttatcacgtaaagtggcgtgaagccaaggctgcttaatggggatcgataagcagccgagtggtattcttgatactctgaaaatggagacagtcaggacaatatttccctcgtatcgctacccccacgagcattcacgtcattttgtgattgctgtggttgtgggatgcttgtttttcatatcatcagataacatgcactcacttattcagaaattcgatatcaaatggtggtctatgtatgcttgtttgctaggattcttttacttcttttcgtctccatttattgggaaaacaattaaaccaagttactcaaatttcagtcgctggtatattgcctggatattagtggcagctttataccacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0012E19.1" temp_strand="-" temp_description="C12HBa0012E19.1  AC232945.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0012E19*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="22878" stop="20264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22578" g_stop="22412" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22411" i_stop="21048" i_length="1364">
            <donor d_prob="0.805" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21047" g_stop="20685" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="530" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20684" i_stop="20604" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20603" g_stop="20564" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="570" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0012E19.1" gen_strand="-" ref_id="SGN-U345114" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0012E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22578" e_stop="22412"/>
          <exon e_start="21047" e_stop="20685"/>
          <exon e_start="20603" e_stop="20564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTGAAAAAAAAGGTTTCTTGCAGACATCCTCACATAATAAATGTTGCTGAGTCGGTTCCTTAATCCAAACATATATTTATATTCCATATTTAAGCAGACCCAAGTTGCTGTTTTTGCTGTCTGTCTTTCTATTTCTGTATTGGCTTTTGTTTCTTAAATTCAGGTACCATTTTCTTCCTGTTTCTATTTGTAGAATTATGGGCATGTAGCAGTTTATATTGATGTTATTGTTTTGGTTGTTTGGTTGTTTGATTGTTCTTTCCTGTTTCATAAGTTGGAACATTGTAATGTGGAAGTTATATGTTTTTTCAGGGAACCCTAGTTAGTTTTGGATTAAGGATCTTTGAATTTGATTTGGGTGTGGCTTAATAAAGAAAATTGGGGGTTGGATTTGCTTTGAATATCTTTCTTTTTCAGTAAAGTTTGAATCTTTATAATGGGGGTGCTAAATTTTTCTTGTAAGTTATTAGTGGGTTGGTTATCTTTAGGAATAGTTTAATTAATGTGATCTTTGGTGCACCCAAGGATGTGGCATAGTGGTCAATGAGGTTTAGAACCATGAGGTTTTGTGTCCAGTTTCCGGTTTAGAGAAAAGATACTAGGTGATTTTTTCCATCCGTCTGAGCTTCAGTTGATAGAGTTATTTGGGAGTTGGTGGGAGGTAGAGGTTTAGGGTGGGAATTAGTTGAAGTGTGCGTAAGCTAGCCGGGACACTATGGTTGTGAAAAAAAAGGTGATCTTTGGTAGTGCAGCAAATCATTTTTTGGGGGGCAGGGTTAAGGTTATGGTTTATGGAGTAGTTTCTTTTGTTAGTTCATGGAGTACTTTGGTCCTCGTCGAATAATTTGCATTTCTAATGTTTTGAAAAAAGAGCAATACAAAATTTTTAAACCTGTTAGTTTATTTTTGTTGTTAAGTTTACGTTAAGGTTCAGGTGGGAAGGGTAAGTTAAGACTTTAGAGTGCTTCTAATTTTAGAGGAACTGTTATGCCTTAACAGACAAGTTAGTTACCAGTATTGTAATAATTAGAATGGACATGGTAGAGCATGGACATGGTAGAGCTAAACATATAGAGAATTGTTATCACTTTATCCTTCGGGGTGGCCCAATGGTTTGGTCTTGGGATTTCCATGTTGGAGGTCTCAAGTTTGAAACCCCTTGCCAGTGAAAGCAAGGGGTTTGCCTTTGGGGTCGATTTGTCGCACAGGGCCTGCGTAGTGTGATTTACCTGTGCGCCTCCAAAGGCCCTTGTTATAGAAAGAGAGAATTCTTATCACTTTGATGCTACTATTATTGTGATGTGAGCGGTTCAAATTGGTTGAATCTTTCTCAATAAACCTGGCTGAGTATAGCATTTTGTGGTAGATAATATTTTCTTCTCTCTCCTCCCCCCTCCCCCTCCCTCCTTTTCTTGTGACTAATTGATTCGAAATATGGACAATGTATGAATATTGTAAGCTCAATGCATGTTTAGTTGATTATTTGGATTTAAATCCAACATTCAAATATAGTTCTCTGTTTTGCAGTTGTCTCTTGGGATCTAGAATTAATCAGCTATAACTCTTATCACGTAAAGTGGCGTGAAGCCAAGGCTGCTTAATGGGGATCGATAAGCAGCCGAGTGGTATTCTTGATACTCTGAAAATGGAGACAGTCAGGACAATATTTCCCTCGTATCGCTACCCCCACGAGCATTCACGTCATTTTGTGATTGCTGTGGTTGTGGGATGCTTGTTTTTCATATCATCAGATAACATGCACTCACTTATTCAGAAATTCGATATCAAATGGTGGTCTATGTATGCTTGTTTGCTAGGATTCTTTTACTTCTTTTCGTCTCCATTTATTGGGAAAACAATTAAACCAAGTTACTCAAATTTCAGTCGCTGGTAAGTCATCTATTTCTATTTATGTCGTAGTAACTCATTAATCAGTAAAATCTAGCTAACAACAGAAATTCTGTTTTGCAGGTATATTGCCTGGATATTAGTGGCAGCTTTATACCACCTT</genome_strand>
        <mrna_strand>TTCCGTGAAAAAAAAGGTTTCTTGCAGACATCCTCACATAATAAATGTTGCTGAGTCGGTTCCTTAATCCAAACATATATTTATATTCCATATTTAAGCAGACCCAAGTTGCTGTTTTTGCTGTCTGTCTTTCTATTTCTGTATTGGCTTTTGTTTCTTAAATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTCTTGGGATCTAGAATTAATCAGCTATAACTCTTATCACGTAAAGTGGCGTGAAGCCAAGGCTGCTTAATGGGGATCGATAAGCAGCCGAGTGGTATTCTTGATACTCTGAAAATGGAGACAGTCAGGACAATATTTCCCTCGTATCGCTACCCCCACGAGCATTCACGTCATTTTGTGATTGCTGTGGTTGTGGGATGCTTGTTTTTCATATCATCAGATAACATGCACTCACTTATTCAGAAATTCGATATCAAATGGTGGTCTATGTATGCTTGTTTGCTAGGATTCTTTTACTTCTTTTCGTCTCCATTTATTGGGAAAACAATTAAACCAAGTTACTCAAATTTCAGTCGCTG.................................................................................GTATATTGCCTGGATATTAGTGGCAGCTTTATACCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321192" ref_strand="+" ref_description="SGN-U321192        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to seven transmembrane domain protein GI:3550427 from (Homo sapiens) | chr1:17520652-17522524 REVERSE | Aliases: F16N3.6, F16N3_6(evalue: 7e-110, score=394) genbank/nr: gi|18401831|ref|NP_564509.1| expressed protein [Arabidopsis thaliana] gi|25405234|pir||D96517 hypothetical protein F16N3.6 [imported] - Arabidopsis thaliana gi|5668795|gb|AAD46021.1| EST gb|AA605495 comes from this gene. [Arabidopsis thaliana] gi|15450709|gb|AAK96626.1| At1g47640/F16N3_6 [Arabidopsis thaliana] gi|28416473|gb|AAO42767.1| At1g47640/F16N3_6 [Arabidopsis thaliana](evalue: 6e-108, score=394)">
      <seq>tgaatgaaaaagcccatattaagcccaaaaaaaacacctgaaagacaaaaacacacacaaaaaactttgccttgagatctcctctactgatccaaacaaggaagaagaagaagaagaagatgacggttttccacttcttcaactgtgcaatccttacattcggacctcatgctgtctattactcagcaacccctttgtctgagtatgacacactgtggacttcaataaaatctgcggttgtttacctttttaccgcactagttaagctagtttgtctagcaacatttcttaatgtatctgaaagtgaaagcgacaattttgatccatatcaggaattgttgaaggctttatttggctttatcgaagttgcaggcctatattttgcattgacacagttgacccacagaaatatttcccagaatcataagtttcaagctgttggactagggtgggcttttgctgattctgttctgcatagactggtacctctttggtttggtgctagaggattggagtttacatgggactacatcttgcaaggcctagaagcaaatgcaaatttggttttcagtatatcactagcagcattgggttctcttatgtggcttcggaaaaacaaacccaagactttgatacctatcatatatgcatgtgctgggattgtggcaacaatgccaaccataaccagttatctgaggcgaggcttggggtggcaccttccaaaagtagttggctttgagcttttcagctcattgctgattgcttttatcagttggcaattgtttgttgcatgccagagaccgtctaactgagttgattacccattggctcttcctcatggaagtttgcgtatggttcttcagcaatgagtatgttctatccggtatttggactaaagctttttatgtcctcctttaccattcactttgcaagtcaggcttcataaccttaaaatattttacgaacaaatttgacgtggagggatttcattggttagcaattttgacatgtactggtttatgaaagattagaatatattgatgaatcatttggcgtttacatgtttgaatatttattacatttttgagtttcaccaatgatccgggggtgttcctgcacaaaagtgctttgtatgaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0012E19.1" temp_strand="-" temp_description="C12HBa0012E19.1  AC232945.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0012E19*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="52059" stop="7655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51759" g_stop="51564" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51563" i_stop="49180" i_length="2384">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49179" g_stop="49110" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="266" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49109" i_stop="48867" i_length="243">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48866" g_stop="48801" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="332" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48800" i_stop="47953" i_length="848">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.689" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47952" g_stop="47838" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="447" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47837" i_stop="46576" i_length="1262">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46575" g_stop="46460" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="563" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46459" i_stop="46240" i_length="220">
            <donor d_prob="0.481" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46239" g_stop="46115" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="688" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46114" i_stop="44518" i_length="1597">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44517" g_stop="44065" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="1141" r_length="453" r_score="0.980"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44064" i_stop="42917" i_length="1148">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="42916" g_stop="42897" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1142" r_stop="1161" r_length="20" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0012E19.1" gen_strand="-" ref_id="SGN-U321192" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1161</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0012E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51759" e_stop="51564"/>
          <exon e_start="49179" e_stop="49110"/>
          <exon e_start="48866" e_stop="48801"/>
          <exon e_start="47952" e_stop="47838"/>
          <exon e_start="46575" e_stop="46460"/>
          <exon e_start="46239" e_stop="46115"/>
          <exon e_start="44517" e_stop="44065"/>
          <exon e_start="42916" e_stop="42897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGAAAAAGCCCATATTAAGCCCAAAAAAAACACCTGAAAGACAAAAACACACACAAAAAACTTTGCCTTGAGATCTCCTCTACTGATCCAAACAAGGAAGAAGAAGAAGAAGAAGATGACGGTTTTCCACTTCTTCAACTGTGCAATCCTTACATTCGGACCTCATGCTGTCTATTACTCAGCAACCCCTTTGTAAGTTTTTTGCTAAAAACTTAGTTTTTTCAATGATATTTTATCTACAATTTGGTCTTTTTTTTTGTTTTCAATTCCCATGTTTTTGATTTTGGGGTTTCATGTTAAGCAATTTAATGACCTGTATTAACTTTTGTATGGTTTTCTGGCTTCTGGGTATGCATTGTATTTAGTATTTCTTGCTTCTATGAGTTGATTTGATTTTTTTTTCAAGAATCGATTTTGATCTCCTTATATGAAATTTTGGTGTTTTTTTTCCATTCCCATGTTTTTGATTGGGTGATTTTGTTTGGGGTCTCATGTTTTGTGTTTATAGGCAATTTAATGAACTCTTGTATGATTTACTGGTGTATTGAATTTAGTATTTTTTAATTATAGGAGTTAATGTTTAAGTATAAGTCAAATTATTAGATGTTATCTTTTATAGGTTATGATTAAACATTGTTATTGGTTATGAGTTAAAATTAATTGTGAGCAGCTGTTATCGATTCTTAAGTGTTTTATCATGATATCTGAAGTTTTAAGTTTATTTTTAGTCTGATGTTTAGTGTTAATTGGCAATTTAATGATCTGTGTTGACTCTTATTTGATTTTCTGGTTACTGGGTATGCATTGAATTTTTAGTACTCCCTCTTGTTTCGATTTGTTTGTTTGGTTTGGACTTCGTGCGAAATTTAAGAAAGTAAAGTCGGTTTTTGAATCTTGTGGTTTTAAACTAATAGATACGTAGAATGTATCAAAATGTCCTTTAATCGTGTGGTCTTGAATATGTCACGTGGAGACTTACAATTAAAGAGTTGCCAAAAAGAGAGAATAGACATTCCTTTTTTGAAACGGAGGGAGTATCTTTTAGTTCTAGGAGTTAATGTTAAGCAGTGAGAAGATTTTTTGATTGATAGTATTAGTCAAATTATTCAAAAGATGTTGTCTTTATAGGTTATGATTAAAACATTGTTATTAGTTATGGCTTAAAATTCATTCTTTTACTTTAATCATGAGCCCCTGTTATCAATTCTTAGGTGTTTTATCATGATATCTGAAGTTTCAAGTGTATTTTTTTTTATCAGGGTAGGATGCAGGGCTTTGGGTGGGGGTTCCTTGGAACCCAGTAAATTTTTACGTAGGTTCAGAAATTCAGTATCTTTATTGAAAAATTTATGTTGGAAACCCGTTAACAAATTAGCCTCTTGGTCCAGTGGTAGAATTGAAACCGGCTTATGCTTTGATGCCCTCCTTATCGAGGGTTCAAATCCCTTTGGGCACTAATCATAACTTTAGATGTCAGGAACCCATAACTTTTAAATCCATATCCACCTCTACTTTTTATCATGCTTAAGTAGCAAAAGTTTGTGCAAAAAAATGATGTATTTATTTGTTAAGTGCATGAGCTAGGTAAGGTTTTTCAATACTATGATTTTGTCTGTTATGAATGATTTTTTTTTTTTGAAAAGGCAAGTAGTATTGATAACAAATCTAGCACAAAGAAAGTACAGTAAATATATCAGAAAAAGTCAACCATGGCTATCTACACTAAAGATTCTATGAATCGTAACAGTGTATCTGCATCATTACTAAGTCCATTTTACACCAAACAGAGACCAAAAGAATACAGTAAGACTTGATTTTCCTGATTTAGTTCCTCTGTCCATGGAAGCATCTTCTATTTCTCTCCTCCCAAATGCTCCATCATATTGCAGCAGGTGTAGAATTCCAGTGTCTCCTCAAAATATTTAGGCAATCCTTTTCTATTCCAGCACAGGAGAGTCTGTTGTGAATGATATCGTGGTGGATCAGCTTTATTTTGTTCTAATAGTTCAAGCAGGTGACTGTAGCCATCGGTTTATCTGATTAATGTTTGGTCAAGCTTATAAATATACACACACATCTATGTTGCCTGGTTTCTTTAGAAATGTTTACAGGTGCGTGTGGGATTCTCCAAAAGTAAAGCATTTTTGGAGAATCCAACACGGGCGCGACAACATTTTTGGAGAGTCCAAGCAAACATAGATCTACAGATATACTTATGCTGCTAGGCTTGTTTAATCTTCTTCCCTATATTATCTTGTTTAGACTTAAATATCTGAAACTGATACTTGATAAAATTATATTTCCTCATTTGTTTTCTTGTTATGGATTCAAAAGTTAGTCAAATTGGACTGTTGTTATGTATAATATAATTCTCTGTCCTCCTTGAGTGAGTTGTTCTAGTATGTTCCTTTTTCTATTTAATCTATGATTTTAGAATCAAGTCAATCTAATCATTTGTGACACATTCCATGACATGGAAGGGAGGTCTCTATAAACCAATACCGTATTTTTAACAGAAGTTTTCTGTTTTTTAAGGAAATTTGAACAGAAGTTGAAACTATGATGTTTTTATGCAGGTCTGAGTATGACACACTGTGGACTTCAATAAAATCTGCGGTTGTTTACCTTTTTACCGCACTAGTTAAGGTAACTGATTATGCCATTAGTCCATGACCATTGATCAAACTAGTTTTACTTGATGGAATTAGCTTTTCCCAATAAAAATATGAAGAAAAAGAAGCTGAGAGATGAATTAAGTTTTACCTCCGTATACCAATTTAACCAGAAAAAATGCCTAAGAATATAAACTTAATTTCCTGGTTGTTACTTTTGTTAGTTTTATTCCTTAATATATCCCATCGTGCTCATTTAGATTCTTTTCCTTTTCAGCTAGTTTGTCTAGCAACATTTCTTAATGTATCTGAAAGTGAAAGCGACAATTTTGATCCATATCAGGTATTTCATTATCCCTCTTCTAATATGTTTCTTTTATCATAGTGACCATCATGGTCACTATCATCTTATTTTTGGCATTTTAGCTGTTGTTTTGCTGTCAAGGACGGGTTTTTTTTTGAAACTGCTCTCGTACAATCATAATTGAATTTAACTGTCTTTAGAGTTTAGACGACACATCTTTCAAGGTTTGGTGAAGTGTAGGTTTGCAGTATAGACTGAGCTTGAAGTACTTTTGAATCTTCTTTTTCTTAAACCATCCTTTTCCCAACCATTTGATTTTATCCATGTAGGATCTACCAGTCTCTCCTCTTTTTTTTTTTGATTCCTTCAAAGACCAGATATATGTCCTGTCGAGCAATCACTTGAAAACCCCTCAGAGTTGGATGACATGAGAAACTGGTACTTGGTGAGAAACACTCAACTGGAACCCACAAAGCTACCCATTCCAATTCTCTTTTCGTTGCTTCAACATGAAAGGAGGAATGTTTGTTTTGGTTTCCTTGCCTAGGAATTGAATCTGCGCTGATCACAATGATAAACCAAAACAAAGAGGAACTCAAAGCATTAAGGCTGATTCTGTTGAAACTAATGAGAGGACAATGTTTTTACATTGTACCATTTTACAAAAATTCGGCTCAATGATGAATCAAATGGTCAATGTGTGTTTTTTTCATGTGGTCCATACACTAATAACTTTTCAATGGAGGTTGATCTTTGGTGTAATTTCTTGATGTATAGAAAAAAAAAATTCAAACTTTTTTGCAATTTAATATGGTTTTGCGTTAGTATATTATTAAGAGCAAAATTTGCTAATAGCTGATCATAAGCTGCTCCTTCCCTTTTTATAGGAATTGTTGAAGGCTTTATTTGGCTTTATCGAAGTTGCAGGCCTATATTTTGCATTGACACAGTTGACCCACAGAAATATTTCCCAGAATCATAAGTTTCAAGCTGTTGGACTAGGTGAGTATGATTTATTTCTTCCTGAAATAACATGCCTTGGTCAAATTTTGATTACTGGGTTAGTAAACCTATTTAGCATGACAAGTCAGTTGGAAATCCAGCAATTGAGAATTAGTTGTTTCAAAATGCTGGCAGACATAATTTGGCGAATACCTGTTTTAATTGGTTCACTGGATAAGGTAAAAGAGTATTTATAAAATGGAAGGCAGATGATAATGGGGTATCATCGCCTGAAGTAACACTTTAACTGTGCTAACTTTCGATAACCGTTTGCGTGCTTGAAGCTTTTGGCTATATGAGAAGATAGTATGTTATTAAGTTATGGTCAGTATCAGTGGCGGATCCAGAATTTTTTTAGTAATGGGTGCTAAATTATTTGTAATTTGAAGTTGGTACTAAAATGGGTGTTCAATTTACATATTCATACAAATTCCTAGGTTATTTTTATAATAATACTGTTGTTGTCTAAGTTACCATTTTCAAAAAACATAATACTGTTGTTGTCTCCCAAATGTAATGGGTGCTCAAGCACCCATACACTTGAATGTGCATCCACCACTGGCCAGTATGACTACCTAAATCATGAACTATACTTTGTTCCAACTTCCAAGACATGAGTTGTTTAACCTGAGACCATGGGAAAACGAGTATCTTGTCTTGTACCATTGTTAGGATTACAATGCCCACCTAACAGCTTTCCTACATGTTTTGCCAGTGAGACAGAAAACCATGTCATGATTGTTTAGCAAAGTTGTGAATTGTGAATTGAACTGAGTTGCTACCAAATATATTCGACTTAATAGAAATTGGATTACTGTCTTTCTCATTGACAGCACTTCTTGTGAAAGTTTGTTAAAGCACAAACTTGAATAGGTAAAGTCATGTTGCCTCATTTCAAATATTATTAAAGGTGCAGGCATTAGTGGTCAAAAGAGTCGTACGATTGAGAATGAGAGTTCCAATGGCAGTATTTGCAGCTTAAGAAGTGGAGACATGGCAATAGTATTTTCTCGTTTGTTGGACATAATTCTTAGTTGCATCATGGTGATCTTATTGTGGTACACTGATTCTCATAAAAATGAAATTCTAGATGAGAGACATAGATCTTCCAACATTGTGACCCTTTAAAATATTTTTGTGAAGTTAAACCAAGGAGTAGCAATTGAAACAAATGTACATATCAAAAAGAAAAAGAAAGAATAGTTTCCTTTGAAATTGCTGCAACTTTCTTGCTTCTAACGTCATTGTTTTTGTATTCACAGGGTGGGCTTTTGCTGATTCTGTTCTGCATAGACTGGTACCTCTTTGGTTTGGTGCTAGAGGATTGGAGTTTACATGGGACTACATCTTGCAAGGCCTAGAAGCAAATGCAAATTTGGTAGAATTTTATTCTTCATGGTCAATTTATTAGCTTTTGCAGTGTAGCACCTCCTTCCCCTCAAAATGCCCAACCCTGTTATCCCATCTCCCACACCCAAAAGAAAAGAAGGAAGAGGGAAGAGAGAACATCACCGTTATTTAGTATAACGTATTACTATGCAGCATGGAGTTGAGATGAAGACTTTTTGACCAACATTTGGTCTTATTTCTTTGTTCAGGTTTTCAGTATATCACTAGCAGCATTGGGTTCTCTTATGTGGCTTCGGAAAAACAAACCCAAGACTTTGATACCTATCATATATGCATGTGCTGGGATTGTGGCAACAATGCCAACCATAACCAGGTCTGTTTTTCTTATTATAGTAAATTAATCCAGAATGAATGCAAATATCAATTAGCTGCTTCACTGAGTGGAGAAGGGTAGAGGGGTAGGCCCATTGTCCCCGAGTTTGAAATGGTGTAGTCGGTTCTAAGGGGTGTGACCCACATAGGTCTCTCTAAAAAATTTGAAACAATTTAGTAGCTGTTTCACATGAATGAAGCAGTGTAACTTTTGGATTGTAATAGTAAATCCTTCTACTGCCCGAGCAGATGCTTTAGAAGTAGAAAAATTGTGTACAATAATAGTGGATATGGCCGGACACTAAGTTGCTTGGACTCTTCTCTTTTGGTGCCACACCAGTGTTGACACGATGGGTGTGGGAACCATACCGGATCTGGTCAACCAATTTTGGGCACTTTGACCAAAAACGATGGAGAAATTCGGGACTGATTAAAACTAAAGCTGAAGTGAAATTGAAGAAAATGGAATACCTTGTATATAGCAATTTATGTCAGTCCTTTTCCTTTTATCTTCGGGATTCTCCTCTTGATCAATATTTTCTCCTTAGAATATCTAGTAAGTTTTCCATAGAATGTCTCTCACGATTTAGACATTATTGTAACTTTAATTTTAAGTATTTGAATTGTTTTTAGCCGAATTCCCGCACCTGGATCCGTAACCCCGAATCTTAGAATGTGAATCATGAAGGATCTGATCTCTAGATCCGCACCCAAATCTGAGCTGCTTAGGCTGGGAATAAAGAAAATAACAATTATCAAAATGCATTCTGTACAGACCAAGTTAAAAAGAAGTCCATTTTGATCTACATTAGTTGTCTTTATAATAGAAACCAATTCTAGTGTAGGAAATTTCATGTTGTCTTTTCGAACCGTATAAACTTATTAATAGTCTCCAGTGTCTAGTAAGTGCTCCAGTGGCATATTTTTCAATTTTTATATCATATACGAAATTGTATCAATCTTTTTCGTCCCATTTAATTGATCCTCCTGTTTAACAGTCCAAATGGACCACCATCACATTTAGTTGCCCCCACTTTTGATAGTCCTTTCACCCTGTGTGGCCCTTTGCTCATAAATTGCAAAATTATGGCAATTTTAGTCTTAAAACATCAGAAATTGTCCAAGATATTTGTGGATAAACATTTTTTTATGCCCGAGAAACTAAAAAAGAAACTAAATGACATAAAGCCCCCAGGGTTAGCTCAGAGGCAAAGGTTGAGGACTTGTGTCTTGGGTCACAAGTTTGAGCCATGCGTCAAAGCAAACTAATTCCAATTGTTAAGTGGAGAAGGGTAGAAGGGTGGACCCATCATCCCGAGTTTCCAAGGTTGCGGTTGGTCCAAAGGGTTGGCTCCATACGGGTTTCTGAGTCACTAAAAATAAAAAATAACATAAAATGGGATGGACATGGGGTCAGTTTGCATTGCTAAGTTAGCAATTATTTGTCCAGTTCTAATTTGACATGAATATGTAAGCTGAGAACCTGATCCTGGAGCACTAACTTCTCTTTGAAGAAAATAATTGCTTCTATTTTAGTCGTCTTTTTCATGTCTGATTCAAAAAACAATCTTGCTAAGCTACTGCTGTGGTGTTTGCAGTTATCTGAGGCGAGGCTTGGGGTGGCACCTTCCAAAAGTAGTTGGCTTTGAGCTTTTCAGCTCATTGCTGATTGCTTTTATCAGTTGGCAATTGTTTGTTGCATGCCAGAGACCGTCTAACTGAGTTGATTACCCATTGGCTCTTCCTCATGGAAGTTTGCGTATGGTTCTTCAGCAATGAGTATGTTCTATCCGGTATTTGGACTAAAGCTTTTTATGTCCTCCTTTACCATTCACTCTGCAAGTCAGGCTTCATAACCTTAAAATATCTTACGAACAAATTTGACGTGGAGGGATTTCATTGGTTAGCAATTTTGACATGTACTGGTTTATGAAAGATTAGAATATATTGATGAATCATTTGGCGTTTACATGTCTGAATATTTATTACATTTCTGAGTTTCACCAATGATCCGGGAGTGTTCCTGCACAAAAGTGCTTTGTATTGATAGAGTTATTGATTCATTTTTCGCAACGTGTACTGTAGTTTTTTGTGGCTTGGATAGTTACAGCCTACGTGCGTTTGATTGACACAAATTCCATGAGATTATGTTTCAGTAATTTAGAAAGGCAGATTTGGGGATACTCCCCCCCTCCCCCCGAGCGAGGCCACGAGGCTTATGCCCCAGGCTCCCGGACATATGCCTAGAATGCACCCTACGCCCTACACGCGAAACTCGCCCCATGGTTCTTGTGTTCTTATGTTATTCGTGTGTAATTAGCCTTGTAAGTCCTCTTCATAAGTTAATAATATTATGGGTAATTTAAATATTCATGGGCCTTACGCCTCGTCTAGACCTATGTGAAACGCCTCCATCTCTCTTTTCTTTTTTGGGGTTACCCACCCGCTGTTTGGTACCCACATTGGAGCATGACTAGATTCGGATTCGCATCGGAAAGTCCAATATTGGAGGGTAAAGCGTTCCCTAACAAAGGCGACTCTATACCCAAAGAAACTCGAACACGAGATCTCTTGGTTAAGGATGAAGGAGTACTTACTACTCTACCACAACCATGTTGGTCTTCCACCTTTTAAACCCCTGATGTCCCATACGTACATATACGAGTAAACATTTGGAAAACATATATTGATTGTTAATTATCGTCAATGCATCTACAAAAATGTATATTCCCTTTGTCCCAGTTTATATGACTTACTTCCTTTTTTAGTAAATCTCAAAGAGAATGACACATTTCTAAAATCAAGTAACCGTTCAATTTTAAAAAGATCATTTTACCCTTAATGAAATGATTTATAGCCACATCAATATCTATCACTTATTTTAGACCACAATTTTTAAAAGTTCTCATTTTTTTCTTAAATTCTGTGTCAAGTCAAACTAACTCATATAAAATGGGGACAGAAGGAGTATAAAGTTTATAAATTTTTAAATCTCCCTACTTGTTTGTAAAATGATCCATTCATTTTGTTTGTTGTTTATATTGTGAGTAATGAGTTGAGAGCAATTTAAGGTTTACCTTTGTTTCCTCTATTATTCTGTGGTGAAATTTATTGTATGATTCATTACCATTGCCCTACTGACTCAATTCATACACTGCATTGACATAATTTGACCTCATACAACAACTATATCTCCCACAAAAAAAGTGAAAAAATCAA</genome_strand>
        <mrna_strand>TGAATGAAAAAGCCCATATTAAGCCCAAAAAAAACACCTGAAAGACAAAAACACACACAAAAAACTTTGCCTTGAGATCTCCTCTACTGATCCAAACAAGGAAGAAGAAGAAGAAGAAGATGACGGTTTTCCACTTCTTCAACTGTGCAATCCTTACATTCGGACCTCATGCTGTCTATTACTCAGCAACCCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAGTATGACACACTGTGGACTTCAATAAAATCTGCGGTTGTTTACCTTTTTACCGCACTAGTTAAG...................................................................................................................................................................................................................................................CTAGTTTGTCTAGCAACATTTCTTAATGTATCTGAAAGTGAAAGCGACAATTTTGATCCATATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGTTGAAGGCTTTATTTGGCTTTATCGAAGTTGCAGGCCTATATTTTGCATTGACACAGTTGACCCACAGAAATATTTCCCAGAATCATAAGTTTCAAGCTGTTGGACTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGGCTTTTGCTGATTCTGTTCTGCATAGACTGGTACCTCTTTGGTTTGGTGCTAGAGGATTGGAGTTTACATGGGACTACATCTTGCAAGGCCTAGAAGCAAATGCAAATTTG............................................................................................................................................................................................................................GTTTTCAGTATATCACTAGCAGCATTGGGTTCTCTTATGTGGCTTCGGAAAAACAAACCCAAGACTTTGATACCTATCATATATGCATGTGCTGGGATTGTGGCAACAATGCCAACCATAACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTGAGGCGAGGCTTGGGGTGGCACCTTCCAAAAGTAGTTGGCTTTGAGCTTTTCAGCTCATTGCTGATTGCTTTTATCAGTTGGCAATTGTTTGTTGCATGCCAGAGACCGTCTAACTGAGTTGATTACCCATTGGCTCTTCCTCATGGAAGTTTGCGTATGGTTCTTCAGCAATGAGTATGTTCTATCCGGTATTTGGACTAAAGCTTTTTATGTCCTCCTTTACCATTCACTTTGCAAGTCAGGCTTCATAACCTTAAAATATTTTACGAACAAATTTGACGTGGAGGGATTTCATTGGTTAGCAATTTTGACATGTACTGGTTTATGAAAGATTAGAATATATTGATGAATCATTTGGCGTTTACATGTTTGAATATTTATTACATTTTTGAGTTTCACCAATGATCCGGGGGTGTTCCTGCACAAAAGTGCTTTGTATGAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328093" ref_strand="+" ref_description="SGN-U328093        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:17459611-17466336 FORWARD | Aliases: F16N3.18, F16N3_18(evalue: 1e-94, score=342) genbank/nr: gi|42562587|ref|NP_175186.2| expressed protein [Arabidopsis thaliana] >gi|25405218|pir||H96515 hypothetical protein F16N3.18 [imported] - Arabidopsis thaliana >gi|5668806|gb|AAD46032.1| Strong similarity to F16N3.17 from Arabidopsis thalian BAC gb|AC007519. [Arabidopsis thaliana] (evalue: 9e-93, score=342)">
      <seq>ggagcagtatatccaaggacaatcaagggatttggttgaccaggcgtacgctaagtttgtcactacaatgttccttactttggataaaattgctaaagcagacccaaaatatgaagacattatgcttttagaaaactatgcagcattccagaatagtctttatgacctggctaatatggtgccaacattagcaaaattctatcatgaagccagtgaatcttatgaacaagcttgcacacgccatatcaatgtgattatattctatcaatttgagcgactttttcagtttgttcgaagaatcgaggatttgatgtacacaatcccgcctgaagagattcccttccaacttgggctgtcaaagatggatcttcggaaggtggtaaaatccagtttatctggggcggataagtccatcagtgcaatgtataagagattgcagaaaaacttgacctcagaggagttgctgccttcattatgggataaatgcaagaaagagttcttggacaagtacgaaagttttgctcagcttgtagccaagatataccccagcgagaacgtcccatctgtttcagaaatgcgcgatcttttggcagccatgtaaagaagctttttgtgagttcgattctagttttagttgttaggaaaagtgtgttgtagagtatgtcttctgttgtctatttgttttctgtagagcatttgcctgtatcgtcctcgcgccttttttgttttcttttaaagctattgtatgagttgtctaagttcttattttcaagtgtaactgtggaggaagaagtttttatgttactacatatcaattcatctgttagttattaaagaagtgttttcnctanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0012E19.1" temp_strand="-" temp_description="C12HBa0012E19.1  AC232945.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0012E19*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="63154" stop="60247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62854" g_stop="62797" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62796" i_stop="62436" i_length="361">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62435" g_stop="62338" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="156" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62337" i_stop="62251" i_length="87">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62250" g_stop="62142" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="265" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62141" i_stop="62017" i_length="125">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62016" g_stop="61948" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="334" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61947" i_stop="61503" i_length="445">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61502" g_stop="61437" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="400" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61436" i_stop="61337" i_length="100">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61336" g_stop="61247" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="490" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61246" i_stop="60907" i_length="340">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="60906" g_stop="60547" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="850" r_length="360" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="852" polyA_stop="867"/>
      <MATCH_line gen_id="C12HBa0012E19.1" gen_strand="-" ref_id="SGN-U328093" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0012E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62854" e_stop="62797"/>
          <exon e_start="62435" e_stop="62338"/>
          <exon e_start="62250" e_stop="62142"/>
          <exon e_start="62016" e_stop="61948"/>
          <exon e_start="61502" e_stop="61437"/>
          <exon e_start="61336" e_stop="61247"/>
          <exon e_start="60906" e_stop="60547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCAGTATATCCAAGGACAATCAAGGGATTTGGTTGACCAGGCGTACGCTAAGTTTGTGAGTGTTTTTATCTCTGACGCGTTTCTTAATAAACGAGTGTGAAGAACTATTAATATGTGAAATTACGACTGCTAAAGATTTTAAAATGGCTCAATATTGATTGGTTTTGTTTTCCTTTTTTGTTTTCTTGGTGTTAGTATAGCAGTTGATAATTCTATTATTTGCTCTTTTGATATTCTATAACTCACATCATGCAAAAGTGGATATAGAGGGAAAAAGCAAAATAAAAATTAGGAAATACCTATACAATTCTTTTCTCCTCTCTGTGTGATGATTTTAATACACTTTGTTGTCGTCAGATAATACTTTTCTCCTTATGTAATGTTGTGGCGTGGCTGTTTCTGACATTGTTTGGCAGGTCACTACAATGTTCCTTACTTTGGATAAAATTGCTAAAGCAGACCCAAAATATGAAGACATTATGCTTTTAGAAAACTATGCAGCATTCCAGAATAGGTATTGTTCTAATGTTACTTCCAGAGCTCTATAACATATTCTATTCCGTCAAATCAGTTTGAGTGCTGATGGGAAGCAGTTGTGCAGTCTTTATGACCTGGCTAATATGGTGCCAACATTAGCAAAATTCTATCATGAAGCCAGTGAATCTTATGAACAAGCTTGCACACGCCATATCAATGTGATTATATTCTATGTAAGCTTCCCTATATCTTGCTTCTTTATTTTGTAATGGTTTCTTTGTTGCTTTTATTGTTACTAGTACTTCTTAAGGTCCAAATCTTTCTGATGATATACCTTTAAAACCTGTACTTCCGACAGCAATTTGAGCGACTTTTTCAGTTTGTTCGAAGAATCGAGGATTTGATGTACACAATCCCGCCTGAAGAGGTTAGGTTATATTTTTTTTTTCATCTAAGCTTCTCCTCTGTTACAGCATTTATTGTCGGCTCTCCTCTTAAGGATATCTTAATTTTCCTTGTATGAGGACAATATTGCTTGTTAATTAGTTTCCTGCTTTGTTATTAAGTTGATGCAAATTTGAACCACTACATGACATTAAATTACTAACACTGGAATAAAGTTGTAATCTCTTTGGCAGATGGAACTTTAGGTTTGCATTACCGACATTTTAAGTTGACACTGAGCAAAAATTTGGTTCCCTTATTTGTAGCTCAGTTGTTCCCTTTCCTCTTTTTGAAGTAACAAAAAATTGTTTTGTCCCATAATTTGTACTTGCTTGAGGTTTCTGTCAACTTAAATGCAAATGTTTCTTATTTGACTGCTTCAATAGATCATCAGCTGCTAATGATCTATGTCATTTTAAATATTTTAGATTCCCTTCCAACTTGGGCTGTCAAAGATGGATCTTCGGAAGGTGGTAAAATCCAGTTTATCTGGGGTAAGTCTGTCAATGTCCTCAATTGATCTTCTATTTTTTTTAAACCTAAAAATGTCTTACATTTCTGGGTCTGATAAATATTCAAACTTTGCTTCTTTAGGCGGATAAGTCCATCAGTGCAATGTATAAGAGATTGCAGAAAAACTTGACCTCAGAGGAGTTGCTGCCTTCATTATGGGATAAATGCAAGGTATATCTAGCAAAATAGGGTATTGAAAGTAATCACTTGAAAATCTCAATAAGAAATAAATTATACGTTGCCTAGTCGGACCACGTTGTAAAACTGTTGAGACAATTCCGGGAAATTCTGTGGCCATTGCCTTGTCCAAGTTCTCTTATTAAAGAACTCAGTCCTCGCTATGTGATGAGATGGACAGTGAACTGGACAATGGATAGAATAGCGCCATTTTGAGTTGCTTTAAAATTTCTTTGTGCCTAGACTTTTGTTGGTCCCTTCGAATATTGATCTCATCTTCCCTTGGTTCATTTTTCGTATAGCAAATTTACCTACAACATTCATATTCTTGCAGAAAGAGTTCTTGGACAAGTACGAAAGTTTTGCTCAGCTTGTAGCCAAGATATACCCCAGCGAGAACGTCCCATCTGTTTCAGAAATGCGCGATCTTTTGGCAGCCATGTAAAGAAGCTTTTTGTGAGTTCGATTCTAGTTTTAGTTGTTAGGAAAAGTGTGTTGTAGAGTATGTCTTCTGTTGTCTATTTGTTTTCTGTAGAGCATTTGCCTGTATCGTCCTCGCGCCTTTTTTGTTTTCTTTTAAAGCTATTGTATGAGTTGTCTAAGTTCTTATTTTCAAGTGTAACTGTGGAGGAAGAAGTTTTTATGTTACTACATATCAATTCATCTGTTAGTTATTAAAGAAGTGTTTTCACTA</genome_strand>
        <mrna_strand>GGAGCAGTATATCCAAGGACAATCAAGGGATTTGGTTGACCAGGCGTACGCTAAGTTT.........................................................................................................................................................................................................................................................................................................................................................................GTCACTACAATGTTCCTTACTTTGGATAAAATTGCTAAAGCAGACCCAAAATATGAAGACATTATGCTTTTAGAAAACTATGCAGCATTCCAGAATAG.......................................................................................TCTTTATGACCTGGCTAATATGGTGCCAACATTAGCAAAATTCTATCATGAAGCCAGTGAATCTTATGAACAAGCTTGCACACGCCATATCAATGTGATTATATTCTAT.............................................................................................................................CAATTTGAGCGACTTTTTCAGTTTGTTCGAAGAATCGAGGATTTGATGTACACAATCCCGCCTGAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCTTCCAACTTGGGCTGTCAAAGATGGATCTTCGGAAGGTGGTAAAATCCAGTTTATCTGGG....................................................................................................GCGGATAAGTCCATCAGTGCAATGTATAAGAGATTGCAGAAAAACTTGACCTCAGAGGAGTTGCTGCCTTCATTATGGGATAAATGCAAG....................................................................................................................................................................................................................................................................................................................................................AAAGAGTTCTTGGACAAGTACGAAAGTTTTGCTCAGCTTGTAGCCAAGATATACCCCAGCGAGAACGTCCCATCTGTTTCAGAAATGCGCGATCTTTTGGCAGCCATGTAAAGAAGCTTTTTGTGAGTTCGATTCTAGTTTTAGTTGTTAGGAAAAGTGTGTTGTAGAGTATGTCTTCTGTTGTCTATTTGTTTTCTGTAGAGCATTTGCCTGTATCGTCCTCGCGCCTTTTTTGTTTTCTTTTAAAGCTATTGTATGAGTTGTCTAAGTTCTTATTTTCAAGTGTAACTGTGGAGGAAGAAGTTTTTATGTTACTACATATCAATTCATCTGTTAGTTATTAAAGAAGTGTTTTCNCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321528" ref_strand="+" ref_description="SGN-U321528        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger protein-related, contains similarity to zinc finger proteins and Pfam domain, PF01485: IBR domain | chr2:6993916-6997130 REVERSE | Aliases: F7H1.11, F7H1_11(evalue: 0, score=630) genbank/nr: gi|22325707|ref|NP_179206.2| expressed protein [Arabidopsis thaliana] gi|29125020|emb|CAD52884.1| ARIADNE-like protein ARI2 [Arabidopsis thaliana](evalue: 8e-179, score=630)">
      <seq>tttcactccgatcaaaactctccaaaaaaaaatccaaaaatcttccttccccacgaaggaatttcaagaatcgacaaacctagggatcatcaaagcgtaaaattgctaacttttttggggtttttcgatttttctctgtggggggttttagtgtatgtgaaaaattatggaggattatagctatgggagcagcgatgatgatgaatgggacaatcaacagtgcaataatgacgatgaagacgatgatgatggtgaatttcttgatgggtttacggaaattgaacaagagagaaacggaatctctggaaagggtccttcatgcaaggtaatcaggaaagagactcttttagctgcacagaaagaagacttgcaaagagtgatggacttgctatctctgaaggaacatcatgctcgaagcttgcttattcattaccgatgggaagttgacaaggtctttgcggttcttgttgagagagggacagaaatgttatatgctgaagcgggtgtgacactggaagggaaagaggaacatacttccactctgtcgacatctgaagtgacgtgtcaaatttgcttcgaagatgcccctgttgagaagaccactgtaatggactgcaaccatatattttgcaatgaatgttggacaactcatttcattgtaaaaataaatgagggtcagagtaaacaagtaacttgcatggcccaaaagtgcaatgtgatctgtgatgaaggaaagattagggatctcgtcactgcaagagatcctgctttagcagagaaatttgatcgttttctgttagagtcatatattgatgataacaagagggttaaatggtgccctagtgttcctcattgtggaaatgcaattcgtattgaggatgatgattactgctgtgaagttgaatgtgcatgtggtgtacagttctgttttaattgtttatcagaagcgcactcaccttgttcatgtctgatgtggaaactttggatgaagaagtgcaagaacgatgggaagacagtaacgtggataagtgaaaatgccaaacattgcccaaactgtcacaatgccgtggagaagaatgggggatgcaaccttgtaagatgtagatgtggacagccgttttgttggttgtgcggtggagctactggcttagaccacacatggagtagcattcgaggtcacacttgtggcatttataaggaaggggaagaggataagtcgacgactgtcagaaatgatctcttgcgctatactcattattatgagcgctatatggttcatcgtgattcgttggaggctgaagcaaacatgaagcaaaaactaaagtttgaagtgttgaaactcgaagcaagggaattgctatcaaaggacttcagctgggtagaaaatggatgtaatagactccttgaattgaggcgaattctctcctgttcctatccagtttcattttacgtttttgatcagacgctgttcaaggatgaaatgacacaaaaagatagggaaataaagaagaacctttttgaaaacctgcagcagcaacttgaaataaacgttgagagactttcgatgttcttggaagaaccatttgctaaatatcctgaagataaacttttggagactagaacgaagatcatcactctctccgtactaacagacaacctctgcaaagagttgtacgattgcattgacaacgatttactgcttcctctacagcaggcgaatcataccatagctcattatagatccgagggagtggcgaaagcatcagaacttcctaattgacattccaccaacactaggcatgtgagcactctcaatcagaggcaagaaaagatgcacattccttttctcatgagctgatctacaattttatgctagagggtttgattactacagcatctaatattcttttgctacacttgatatgaatttagtctagattcttaactacatatagtttgagttgaagacaatgtatgaacattggttttcgtttggccatatcatatcatatattattataagtgggaagattcaaactgcaaagttgaattatcattttgtccctctacagttaataaatgagtacattgatattgcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0012E19.1" temp_strand="-" temp_description="C12HBa0012E19.1  AC232945.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0012E19*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="83385" stop="78109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83085" g_stop="82761" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82760" i_stop="81785" i_length="976">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81784" g_stop="81752" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="358" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81751" i_stop="81669" i_length="83">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81668" g_stop="81389" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="638" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81388" i_stop="80947" i_length="442">
            <donor d_prob="0.506" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80946" g_stop="80463" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="1122" r_length="484" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80462" i_stop="79693" i_length="770">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79692" g_stop="79144" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1123" r_stop="1671" r_length="549" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79143" i_stop="78842" i_length="302">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78841" g_stop="78401" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1672" r_stop="2112" r_length="441" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0012E19.1" gen_strand="-" ref_id="SGN-U321528" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2112</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0012E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83085" e_stop="82761"/>
          <exon e_start="81784" e_stop="81752"/>
          <exon e_start="81668" e_stop="81389"/>
          <exon e_start="80946" e_stop="80463"/>
          <exon e_start="79692" e_stop="79144"/>
          <exon e_start="78841" e_stop="78401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTCCGATCAAAACTCTCCAAAAAAAAATCCAAAAATCTTCCTTCCCCACGAAGGAATTTCAAGAATCGACAAACCTAGGGATCATCAAAGCGTAAAATTGCTAACTTTTTTGGGGTTTTTCGATTTTTCTCTGTGGGGGGTTTTAGTGTATGTGAAAAATTATGGAGGATTATAGCTATGGGAGCAGCGATGATGATGAATGGGACAATCAACAGTGCAATAATGACGATGAAGACGATGATGATGGTGAATTTCTTGATGGGTTTACGGAAATTGAACAAGAGAGAAACGGAATCTCTGGAAAGGGTCCTTCATGCAAGGTAGTATGATAAAAGTAAAATTTTTACGGGTTTAAACGAATTCAGTAAGCTTTATATTTCGAAACCGATAAAGGATTTTGAGAAATTAACCTATAAAGTTTAAATCTTCGATACACCCCTTGTAACCCTTTTCATGCAAATGCTTAATTTTATTGTTTTCGAAAAAAAAGGTGTCTCTTTTGAGACTTGATTAGGTTTTCCTTCATATTTTGTTCTGGTTTTGGTTGTAGTTCTTTCATACACAAAATATATGCTTCGTATCAGAAATGTCAGTTTCTAATACATTAGAACTCTAGAATGACTGTTTAATACTGTTTCAGTTGAAAGATTGGTACTAGTAGATTTTATGCATGTTCAGTGATTAAATATTGGGTAAGACACTGGATGGTGTAGTGATTTGTCTCGCTATCCGTTCAGACTAGGAGTCGTAGTATTGCTAATGTAGTTTCTTGCCTTCGATTTCTGTTGTTTCTCGTAAGTATATTTTGTTATACTTTCACTTCCGTTGTTTGTTTTGGACTGTTTTTTCTTGAGCTGAGGGTCTGCAGGAAGCAGCCTCTCTACCTCTTAAGGTAAAGGTAAGGGCGGCGTACAAGTACCCTCCCTAGACCTCACTTTACGGGACTATGATGGGTATGTTGTTGTATACTGGATGGTGTTTTCTTTAACAAAAAAAGAGTTTTAATGATTTTAAATATTTTGATATTATGCTAGAAATTCTTTAAATGAGATTAGCTTCTGGCTAGCAGCGTAACTTTTTGAGTTTCTGCCACATACAATCATTTTCTAAGTCCTGTGAAGCAATGAATACCCTGTGCCAAGTGAGTGCATGAGGCACAGTACATGATATATAATTACTTATCAGGGAAAGTATAGGAAGGAAAAAATCACCCTGAATTGTGAAGTTGTCTGCTATTTTCATTTTTATGATTTATGAATTTCTTCAGTTCTTCATGCCTACTGTTGGGTTTTGTAGGTAATCAGGAAAGAGACTCTTTTAGCTGCACAGGTGAGCAACTTTTCCCAAAATTTTGACTTTTCCATATGGATATATGTTAACTGACATGAGAAATAATGGTATTTAACTTGCAGAAAGAAGACTTGCAAAGAGTGATGGACTTGCTATCTCTGAAGGAACATCATGCTCGAAGCTTGCTTATTCATTACCGATGGGAAGTTGACAAGGTCTTTGCGGTTCTTGTTGAGAGAGGGACAGAAATGTTATATGCTGAAGCGGGTGTGACACTGGAAGGGAAAGAGGAACATACTTCCACTCTGTCGACATCTGAAGTGACGTGTCAAATTTGCTTCGAAGATGCCCCTGTTGAGAAGACCACTGTAATGGACTGCAACCATATATTTTGCAATGAATGTGAGCATCTCCCATCCCTTCCCTGAGCCTCTATCTCTGTACGAGTAAAATGTTTCTCTTATCTCTTATCCCCATTTAATCATTATACTAGTGACATGTCACTTTTGACACATGATCTGGAGTTTGTTGTCCCAACAGTTGAAGTCTCTGTTTGTATGCCTCACATAAGTGGGAAAGCTGTTGGGATCCTTTTCGTAACTACCTAACTTCGAAATACTGATGATTTCACTACATCTTTAATGGCATCAATAGCATTTAGAATCTTTTTCTGTAGCAAACCTATGTCTTTGTTAATTTTCTTTAATGTCAAAGTGATTAGTGCAGCTTGAAAAGTTGATGAGCTAGATTCACTTTTTGTATTTATTGTTGGTGCTTTCTCTTTTCTGGTCACTCGAACAAACGATGGTGTAGGCTTAAGGTTGCCAATAATTGTTCTATGCAGGTTGGACAACTCATTTCATTGTAAAAATAAATGAGGGTCAGAGTAAACAAGTAACTTGCATGGCCCAAAAGTGCAATGTGATCTGTGATGAAGGAAAGATTAGGGATCTCGTCACTGCAAGAGATCCTGCTTTAGCAGAGAAATTTGATCGTTTTCTGTTAGAGTCATATATTGATGATAACAAGAGGGTTAAATGGTGCCCTAGTGTTCCTCATTGTGGAAATGCAATTCGTATTGAGGATGATGATTACTGCTGTGAAGTTGAATGTGCATGTGGTGTACAGTTCTGTTTTAATTGTTTATCAGAAGCGCACTCACCTTGTTCATGTCTGATGTGGAAACTTTGGATGAAGAAGTGCAAGAACGATGGGAAGACAGTAACGTGGATAAGTGAAAATGCCAAACATTGCCCAAACTGTCACAATGCCGTGGAGAAGAATGGGGGATGCAACCTTGTAAGATGTAGATGTGGACAGCCGTTTTGGTGAGACTTTATCCATGTCTGCAGTCTTTATTTTTTTTCAAATTTTCTAATTTATATGTTCTATTCTTATTCCATTTATTTGCTATACCATTTTCATTTTATATATATTTTTCTATTGAAGTCTTTTAACAATATATTCTGTTCCTTCTCTTTTCTTTGGTCTCCCGGGAGTTTTCTTGGGGTGGGGGTGGGGGGTGATTAGTCTTGTGATGCATGAATTGCATATGATGCAAACAAGGACTTCCAAGGAGTAGAGATTGATGACTTTTAAAGCAGGAAACTGTAAAATAAAAGAAAGAGGGGGAAAGGAGAGCAAATGCTAAGAGAGTTGAACAGATAAAACGGATAATCCGTCCTTATTCCAAGAATGAAAACTTGACCAAGAATTAGAAGGACAAAGAGAAGCAGCAATATTTGTGGTTGTAGTATAAGCGGGCAAAGGAAAAGGAAGCATAACCTCAGTTGTTAAGAGCGGGAAGAGAAAGAGAAAAAGAGCATTTTCAAGGTTATAGAAGTTAAGATCCTAAGGTTATCCATCCCTTGCTAGAGATGTAGCTAGTTATTCTTTGAGTGTAGGGTAACAGTTAAATACACATTTCTCCTTTTTCTTACCTACAAGCTCAAAGTATGGCATAGTAGTTTCTCCTTTTTTTTCCTTGCACGTATTGGTTAATTTATTGAAAACATGTTGGCCAAGCCAAATTATCCCAGTACTTTCTCTTTCTCCATCACTTATATTTGTGTATGCAATTTTATTTTATACTTTGTAGTTGGTTGTGCGGTGGAGCTACTGGCTTAGACCACACATGGAGTAGCATTCGAGGTCACACTTGTGGCATTTATAAGGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGCTATACTCATTATTATGAGCGCTATATGGTTCATCGTGATTCGTTGGAGGCTGAAGCAAACATGAAGCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAGGACTTCAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCCTGTTCCTATCCAGTTTCATTTTACGTTTTTGATCAGACGCTGTTCAAGGATGAAATGACACAAAAAGATAGGGAAATAAAGAAGAACCTTTTTGAAAACCTGCAGCAGCAACTTGAAATAAACGTTGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAAGAGTTGTAAGTGTGCATCACATCTAATAAACTAGCTATGCATTATTTATATTTGCGTTAGGTTCTTCAAGTACATTGATATGTTAAAGAAGTCATCTACAGAAGGTCCTTTATATAACAATTCAGTTTCAAGGGAAACGAAACTCATGCTTTTCTAAACGAGTATCAACCATAATGCCCTTTGGTTAGAATCACAAGAAAGGCAAAAACAGTGATCTTTACTTGTGTTCTGTAGAAACTGACTGATCTGGATATTGCTAATGTGTCTACCAAGTGAGGCTTCATTCCTGGATTTTTTGTTTTTGCAGGTACGATTGCATTGACAACGATTTACTGCTTCCTCTACAGCAGGCGAATCATACCATAGCTCATTATAGATCCGAGGGAGTGGCGAAAGCATCAGAACTTCCTAATTGACATTCCACCAACACTAGGCATGTGAGCACTCTCAATCAGAGGCAAGAAAAGATGCACATTCCTTTTCTCATGAGCTGATCTACAATTTTATGCTAGAGGGTTTGATTACTACAGCATCTAATATTCTTTTGCTACACTTGATATGAATTTAGTCTAGATTCTTAACTACATATAGTTTGAGTTGAAGACAATGTATGAACATTGGTTTTCGTTTGGCCATATCATATCATATATTATTATAAGTGGGAAGATTCAAACTGCAAAGTTGAATTATCATTTTGTCCCTCTACAGTTAATAAATGAGTACATTGATATTGCTTTTAATCGTAATC</genome_strand>
        <mrna_strand>TTTCACTCCGATCAAAACTCTCCAAAAAAAAATCCAAAAATCTTCCTTCCCCACGAAGGAATTTCAAGAATCGACAAACCTAGGGATCATCAAAGCGTAAAATTGCTAACTTTTTTGGGGTTTTTCGATTTTTCTCTGTGGGGGGTTTTAGTGTATGTGAAAAATTATGGAGGATTATAGCTATGGGAGCAGCGATGATGATGAATGGGACAATCAACAGTGCAATAATGACGATGAAGACGATGATGATGGTGAATTTCTTGATGGGTTTACGGAAATTGAACAAGAGAGAAACGGAATCTCTGGAAAGGGTCCTTCATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCAGGAAAGAGACTCTTTTAGCTGCACAG...................................................................................AAAGAAGACTTGCAAAGAGTGATGGACTTGCTATCTCTGAAGGAACATCATGCTCGAAGCTTGCTTATTCATTACCGATGGGAAGTTGACAAGGTCTTTGCGGTTCTTGTTGAGAGAGGGACAGAAATGTTATATGCTGAAGCGGGTGTGACACTGGAAGGGAAAGAGGAACATACTTCCACTCTGTCGACATCTGAAGTGACGTGTCAAATTTGCTTCGAAGATGCCCCTGTTGAGAAGACCACTGTAATGGACTGCAACCATATATTTTGCAATGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACAACTCATTTCATTGTAAAAATAAATGAGGGTCAGAGTAAACAAGTAACTTGCATGGCCCAAAAGTGCAATGTGATCTGTGATGAAGGAAAGATTAGGGATCTCGTCACTGCAAGAGATCCTGCTTTAGCAGAGAAATTTGATCGTTTTCTGTTAGAGTCATATATTGATGATAACAAGAGGGTTAAATGGTGCCCTAGTGTTCCTCATTGTGGAAATGCAATTCGTATTGAGGATGATGATTACTGCTGTGAAGTTGAATGTGCATGTGGTGTACAGTTCTGTTTTAATTGTTTATCAGAAGCGCACTCACCTTGTTCATGTCTGATGTGGAAACTTTGGATGAAGAAGTGCAAGAACGATGGGAAGACAGTAACGTGGATAAGTGAAAATGCCAAACATTGCCCAAACTGTCACAATGCCGTGGAGAAGAATGGGGGATGCAACCTTGTAAGATGTAGATGTGGACAGCCGTTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTGTGCGGTGGAGCTACTGGCTTAGACCACACATGGAGTAGCATTCGAGGTCACACTTGTGGCATTTATAAGGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGCTATACTCATTATTATGAGCGCTATATGGTTCATCGTGATTCGTTGGAGGCTGAAGCAAACATGAAGCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAGGACTTCAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCCTGTTCCTATCCAGTTTCATTTTACGTTTTTGATCAGACGCTGTTCAAGGATGAAATGACACAAAAAGATAGGGAAATAAAGAAGAACCTTTTTGAAAACCTGCAGCAGCAACTTGAAATAAACGTTGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAAGAGTT..............................................................................................................................................................................................................................................................................................................GTACGATTGCATTGACAACGATTTACTGCTTCCTCTACAGCAGGCGAATCATACCATAGCTCATTATAGATCCGAGGGAGTGGCGAAAGCATCAGAACTTCCTAATTGACATTCCACCAACACTAGGCATGTGAGCACTCTCAATCAGAGGCAAGAAAAGATGCACATTCCTTTTCTCATGAGCTGATCTACAATTTTATGCTAGAGGGTTTGATTACTACAGCATCTAATATTCTTTTGCTACACTTGATATGAATTTAGTCTAGATTCTTAACTACATATAGTTTGAGTTGAAGACAATGTATGAACATTGGTTTTCGTTTGGCCATATCATATCATATATTATTATAAGTGGGAAGATTCAAACTGCAAAGTTGAATTATCATTTTGTCCCTCTACAGTTAATAAATGAGTACATTGATATTGCTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332544" ref_strand="-" ref_description="SGN-U332544        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tttttttttttgccgttttcttttgattatcctgattgcattatgtcaatgtttaagctttgtatcacacatgtattaatgtacttttaatacatttttgaacaatgtattggaaggggagcaaatgttgatgtacacactgaatgaggcatcgaggaacgtcatggcatcgatgataaagttgatgctctgaagagcataatcaagatcagcgtcagtagttcaataggtatcacatggtggtcgagggctcatcaacagtcaatagaacttaatatacagtaaacatgatactgtctcttccatgcttggacgatttgttggttctcgagttttcctttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0012E19.1" temp_strand="+" temp_description="C12HBa0012E19.1  AC232945.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0012E19*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="88098" stop="89177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88399" g_stop="88680" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88681" i_stop="88826" i_length="146">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88827" g_stop="88875" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="331" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0012E19.1" gen_strand="+" ref_id="SGN-U332544" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0012E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332544" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88399" e_stop="88680"/>
          <exon e_start="88827" e_stop="88875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTATTTTTGCCGTTTTCTTTTGATTATCCTGATTGCATTATGTCAATGTTTAAGCTTTGTATCACACATGTATTAATGTACTTTTAATACATTTTTGAACAATGTATTGGAAGGGGAGCAAATGTTGATGTACACACTGAATGAGGCATCGAGGAACGTCATGGCATCGATGATAAAGTTGATGCTCTGAAGAGCATAATCAAGATCAGCGTCAGTAGTTCAATAGGTATCACATGGTGGTCGAGGGCTCATCAACAGTCAATAGAACTTAATATACAGGTGTGTATTCGGAATTTAGACGTCTGAATCTTAAAAAATACAAATGAGGCCTTAGTCTAGGCCCTAGAAGAAATGCAAAAAAAATGCCCATATTCTTAATTCTAACTGGTTTATTCTGCCTTATGTACATTTACTTGAATCTTCAGTAAACATGATACTGTCTCTTCCATGCTTGGACGATTTGTTGGTTCTCGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTGCCGTTTTCTTTTGATTATCCTGATTGCATTATGTCAATGTTTAAGCTTTGTATCACACATGTATTAATGTACTTTTAATACATTTTTGAACAATGTATTGGAAGGGGAGCAAATGTTGATGTACACACTGAATGAGGCATCGAGGAACGTCATGGCATCGATGATAAAGTTGATGCTCTGAAGAGCATAATCAAGATCAGCGTCAGTAGTTCAATAGGTATCACATGGTGGTCGAGGGCTCATCAACAGTCAATAGAACTTAATATACAG..................................................................................................................................................TAAACATGATACTGTCTCTTCCATGCTTGGACGATTTGTTGGTTCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328681" ref_strand="+" ref_description="SGN-U328681        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein, contains Pfam domains, PF00069: Protein kinase domain and PF01476: LysM domain | chr2:10127322-10129160 REVERSE | Aliases: F27L4.5, F27L4_5(evalue: 2e-31, score=132) genbank/nr: gi|15224061|ref|NP_179957.1| protein kinase -related [Arabidopsis thaliana] gi|7488257|pir||T02414 probable protein kinase [imported] - Arabidopsis thaliana gi|3152607|gb|AAC17086.1| putative protein kinase [Arabidopsis thaliana](evalue: 1e-29, score=132)">
      <seq>cttgagacttggttctgatcagccattccctgagagagccattttgcatgtattcaaagacaagaaagaagcaacctttatgttcacaatagccacaaagctttattagattgaagtgattgatcttatgtagtatgttcacttctctagatacatccatgatcgccattttgactgctaaggtttcccctttaaaccctccccagtatacagatccctttatccggttcttggagtcaaagttttgcgtagcatgcttcaattctttaaacttaaaaaccttagggacatgatctatgttcgcgatctccacgaggatatcttcatgacttgaagacctcctcggaaatttgctatctcttttcttaaacaaagcaagaaggatgacccaagaaaccacaaagcctgttgcaactccactacctatgtaaagatttctctttgattttccctttgaagcattagctgcagatggaggtgaaaacgacctaataggttttctataattctcatttccggtatctaaatttgatggttcagaaggcaggggaattagaatggttgtaaaaggatacaaaacagaattttcatccaagaatccatttgcttcgattatgttccttccattaactttaaatcttttgccgactgtaaggatgtcatcgccaacgtttattgaataagtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0012E19.1" temp_strand="+" temp_description="C12HBa0012E19.1  AC232945.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0012E19*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="89066" stop="90354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89366" g_stop="90054" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0012E19.1" gen_strand="+" ref_id="SGN-U328681" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0012E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89366" e_stop="90054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGACTTGGTTCTGATCAGCCATTCCCTGAGAGAGCCATTTTGCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGTAGTATGTTCACTTCTCTAGATACATCCATGATCGCCATTTTGACTGCTAAGGTTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTTGCGTAGCATGCTTCAATTCTTTAAACTTAAAAACCTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCCTCGGAAATTTGCTATCTCTTTTCTTAAACAAAGCAAGAAGGATGACCCAAGAAACCACAAAGCCTGTTGCAACTCCACTACCTATGTAAAGATTTCTCTTTGATTTTCCCTTTGAAGCATTAGCTGCAGATGGAGGTGAAAACGACCTAATAGGTTTTCTATAATTCTCATTTCCGGTATCTAAATTTGATGGTTCAGAAGGCAGGGGAATTAGAATGGTTGTAAAAGGATACAAAACAGAATTTTCATCCAAGAATCCATTTGCTTCGATTATGTTCCTTCCATTAACTTTAAATCTTTTGCCGACTGTAAGGATGTCATCGCCAACGTTTATTGAATAAGTCATC</genome_strand>
        <mrna_strand>CTTGAGACTTGGTTCTGATCAGCCATTCCCTGAGAGAGCCATTTTGCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGTAGTATGTTCACTTCTCTAGATACATCCATGATCGCCATTTTGACTGCTAAGGTTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTTGCGTAGCATGCTTCAATTCTTTAAACTTAAAAACCTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCCTCGGAAATTTGCTATCTCTTTTCTTAAACAAAGCAAGAAGGATGACCCAAGAAACCACAAAGCCTGTTGCAACTCCACTACCTATGTAAAGATTTCTCTTTGATTTTCCCTTTGAAGCATTAGCTGCAGATGGAGGTGAAAACGACCTAATAGGTTTTCTATAATTCTCATTTCCGGTATCTAAATTTGATGGTTCAGAAGGCAGGGGAATTAGAATGGTTGTAAAAGGATACAAAACAGAATTTTCATCCAAGAATCCATTTGCTTCGATTATGTTCCTTCCATTAACTTTAAATCTTTTGCCGACTGTAAGGATGTCATCGCCAACGTTTATTGAATAAGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312365" ref_strand="+" ref_description="SGN-U312365        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | RUB1-conjugating enzyme, putative, strong similarity to gi:6635457 RUB1 conjugating enzyme (Arabidopsis thaliana); contains Pfam profile PF00179: Ubiquitin-conjugating enzyme | chr2:8080282-8082030 REVERSE | Aliases: F24H14.5, F24H14_5(evalue: 7e-86, score=313) genbank/nr: gi|76573335|gb|ABA46772.1| RUB1-conjugating enzyme-like protein [Solanum tuberosum] (evalue: 3e-97, score=357)">
      <seq>agaggatacctttctattaaaattctcatttcagcagcagcaggaggaggttcacataattttgggaaccatgattaagttgtttaaagtgaaggagaaacagagagagcttgctgaaaatgcaaatggaaagccaccaattaagaaacaaagtgcaggagagctgcgtcttcataaagatatcagtgaactaaatctacctgaaacgtgtagcatatcattccctaacggaaaagatgacctcatgaactttgaagtcaccattcggcctgatgaaggatattatgtgggtggaacttttgtcttctctttcagcatttcttctatttatcctcatgaggctccaaaggtcaagtgcaagacaaaggtttaccacccgaatattgacttggaaggtaatgtgtgtctcaacattcttcgagaagactggaaacctgtgctcaacatcaacacaataatctatggcttgtatcatttgttcacggaacccaatcacgaggatcccctcaatcatgaagcagctgctgtgttgagtgacaaccccagcttgttcgagtccaatgtcagaagggcaatgtctggaggatatgtaggagaaacgttcttccaacgctgcatataaacgtctcagatgcagaatcgattagttgatgatgcttacaccagaagttgaaggctctgaaagtctgtgaagttgggaccaggaagaaccatttttacatgtgaaaaagatttgagtgcaaaaatgttattagatatttgcaaaacttaaaacctgcagaacgttttctgtatgtaagtgttaaaactgaagctgttaagagaccctttgcctggatgaatttatgtacaatctgaacttatgttttcgcgatcttgcgcttcaattatcgtattatttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0012E19.1" temp_strand="+" temp_description="C12HBa0012E19.1  AC232945.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0012E19*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="93837" stop="99374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94137" g_stop="94157" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94158" i_stop="94271" i_length="114">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94272" g_stop="94314" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="64" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94315" i_stop="96751" i_length="2437">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96752" g_stop="96866" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="179" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96867" i_stop="97988" i_length="1122">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97989" g_stop="98097" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="288" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98098" i_stop="98269" i_length="172">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98270" g_stop="98348" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="367" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98349" i_stop="98458" i_length="110">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98459" g_stop="98575" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="484" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98576" i_stop="98654" i_length="79">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98655" g_stop="99073" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="903" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0012E19.1" gen_strand="+" ref_id="SGN-U312365" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0012E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94137" e_stop="94157"/>
          <exon e_start="94272" e_stop="94314"/>
          <exon e_start="96752" e_stop="96866"/>
          <exon e_start="97989" e_stop="98097"/>
          <exon e_start="98270" e_stop="98348"/>
          <exon e_start="98459" e_stop="98575"/>
          <exon e_start="98655" e_stop="99073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGATACCTTTCTATTAAAGTAAAAAAATAAATTATAATACATTAGTGTCCTTTTTTTTCTCAGATTCTCTTCTACTATTTTTCTCTATAAATATAGAGACTCCATCACTATTCTTCAATCTTCTTTTTGCAGATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTGGTATTTTCTTGAGCTATTTGCTATTACTTTTATCAGATTCAGCGATAAAAAGGGTTCTTTTACGTGTTTTTCTTTTTTGTTTTCAAGTTTTGTTCTTACCCAGATCGTGAAATCGACTGAATTATCGATGGTTGCTCTTTAATTTAAACCCCTTTTGATAAATTTGTTGATTTTGAAGAATTTTGTCCAGAAATTATGCTTCTTGGCGGCGTGTTTGATCTTAGTTGATATCAGTCTGTCTTGTTTGCTTTTAGTTGGGATTGACTGAATTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGTTAACGTTTTAAGTTTGGGTAGTGGAAAGTGCTAGTATAGAGAACCTCTTAAAAAAAAGATGATTTTTTTTAGCATTATTAGATGTTGGTTGCTTGTTGATATGTTGTTCGGATTTTTCAAAAATGGCGCCTCGAATTCTCAAAAACAGCGCATTTTTGCTGGATTGTGATATGGGTGTGGCGTTGATTGCTCTAGTTTTGTTAAAGCTCAAGCCTTTCTTGTGTCTTCCCGAAATGATGGCACACCTGTGGGAAGCTACAATTGTGACATTATTTTTGGAGAGCCTGAGCACTATAGCCAGTTTGTGATCTTAACTTTTGAGCCTGAATAAGTGTTTGAAGCTACAATTGTTGCTTCCTAGTTTAATTGCTCTAGTTTTGTTAAAGCTCATGTATTTTCTTGTGTCTTTCCAAAATAATGGCACCTTCGTGGGAAGCTACAATTTCGGCATTATTTTTGGAGAGCCCGAGCAACATAGCCATTTGTGATCTTATTTTTGAGCCTGAATTAGTGTTTGAAGCTACAATTGTTGTTCCTAGTTTAATTGCTCTAGCCTCTGTTAAAGCTCAAGTATTTTCTTGTGTCTTTAACAGAAAAGGTGTAGCTTGATTGATGCTGAATTTTACTTTTGATTAGCAGAATTGTCCCAAGCTAGAGTTTGGTGCTGGGTCGTTCTATGCATGTCTGTTAAGATCTTTGTGTTTAGTTCTGGCCGAGAATAGATTCAGTGATAGTACCCGCAGTTGGAAAAATTAGTGGTATCCCAGAAGGTAATATTCATTATTGATCTACTCTTAATGTCCATAACCAGAAGTGAATTTATAACCTAAAACTGGGGCACATGAACTCGTGCTCTTTCCGTAGAACTAGGTATTTTATCTATACATTTTCTAAGGTCACGAGAAGGCTAAATGGTGCACTTGGTTGACTGTTGAGTTATTTATCTAGTGGACTGGGGATCAATCCTACTTGATGCAAATTTTCGTTCTTCCTTTTAGCAGTGCACCATGTTCTAGAAATCCTAGATTCGCCTCTGTCCATAACATACAACTTGAATTGTTTTATGTTAATTGATTTTTGGCCAGTGAATGGATATTATGAGATGATAATATCTCTAGTTAATCCTCTTTCATATTCCATCTATCAAAGTCCTTGAATAGCCTTCAATTGACTTGAATGACATTTACAATATTCAAATGGTTACACTTTCCAAAACTGAGCCATTGCCCATTATATTTTGTTGTCAGATGTTAGCATCTTTTCCCTTCTTTACTCCTATATATTCTCTATGTGTTTCCACTTTGTTAAGTGTGAAAAATCAAGAATCAATACTAAGAAACAAAGTCTCTTCTTCTCCATTTCTTGAGTGCTGGGTTTTCTTCTAAATAAATCTTTATAGTTTCTGTGTTTCTAGTTCTATACTAGAAGAGCTTATTGAATCATAGGGGACAGTGTCTTTGACATGCCTCAAGCTTTCAAGAGTTCTCGACAGGTTTCGTGATCAAGTATTTTCCATAAGAATCCAACACCAATTTCAAAGCTTAACTGGTAGTGAAAAAGAAATACAAAAAGTTAAAGTTCTATTTTTCTGCTTTAAAGCTCAGAAGAGTTATTGGAACATTACGCAGAAACATTGGCTATTTTAAAAGAAATGATTTTTATATTCTTTATTCATATTAGCACAGGAGGTTAGTTGATTCAGATGACTTACAAGCTCTAGATTGCAGATTTTGCAAGCGCATCCAAATATGTTAGAAGTAAAAGATCCATCCAAGTGATACCAACTAGCTGAGAATAATATATTAGTGTGTGTGAGGAATCCTTTTCATCTTGATTAGAGACTTGTATATCTCTATAAGAATAAATGTGAGATTTGAAGAACCTTTAGTTCAAGAGAACTTCTAATTTGCTTTATTATTCAATATTAAATGAACTTGAGTAGCATGTAATGATACATAGATTCATATTTTCGAACCCAAATACTTTGGGGCGGAGGCTTAGTTAACTGCTGGAATTTTTACGTACTTACTGTTCTGATTTGTACTTATAAATGAAAAAGATGGAGAAGATTTATTTTTCATGTATTTCATCTCTTAGTTCTTATTGTGGTTCAACGTATGCATTTTGCTTTTGCAGGGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAGGTATTTCCTTTTCAATTTCTTTGTAAAATCTTTTTTAATCAAATTAGTACTTTAAGCATTTCGTTTCATGCAAGGTAATTTGTTATATCTTTTAGCATGCCAAATTGGTCAATTTAGGTTTGATTAGCTAGGGTTTCATTTCAGTTGTTTGTTTACCTTCCTTAGAGATCTTCCATGTAAAGTTTCAGATGAAATAGTGCACTCTGATTATAATTTGAGACATGAGAAGTTGTGGTTGTCATGAACCAGTTTTCTCCTCTTTGGTATCATGGGAGCATGTGGAGTGTGTAGTAAATGTAGAAATGGCAAGAGAGAATGCAGTGCTTCCTGATAAAAAAAAAGTAATTGTTTTTAGAAAATGTAGTACTTTACTTGGAGGGGGTGGGTGTTGTTGATCTCAGGTATTTCACAAACAGTCTGTCCACCTGCTACAACTACAAGTTTACAGGCCCATGCTGTGTATTGCTAGAATCCAACGTGTGTGTTGAAGTGGATCCCTCGTGAAGTGGTTTTTTGTACAGTGAAGGTAAGAAGTGGAGGTTGGACTGTTGGAGGAGGGTAAGTGTAAATGGAGGCCAGAAGGCAGTGAAACTTTGAGTGCCCCCCAAATTCATATTACATCATTCACGGGTTTCCTCAAATCTCCCATGTATGCTGTAGAGATTTGACGTATACATTGTCATTTCTTTGTTGACTCCTTTTACTCGTATATAGGCGAAAATTTGTGTTATGTTTGACCATCCACTGTTGAAGATTGATGTTGCTTGAACCTCTATATGTGACAGCTAACTGCATATGACTCTCACATATATTGAAAGTTAAAAGTGAAGATTATTGTTGCTTGATGCAAAGCACTTTCTAGTGAAGGGGTTCTCTTCGTCTTTCTTTTGATTGATGAACTTTCTGATGGAAGTTCATGAATAATTGTGTCAGTTCCTTCCTTCATTGACTCATTCTCCGATTCATTATAGAATGTTTCCTCTTATAATAAAGAATCTATACAAAAGGGATTCATTTATATTTCTTTGTTCCAGGTGGTTCTTTTCTCCGACTATTTATTTGTCTTCTATTTTTTTCCACACCAATGAAGATGGCCTTAACGTTTTTTTAATTTCCCTGTAGATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGTGTAAGTAGTTCTGCTGAAATTATTCTCTCTTTAATGAAGTATATTCCTGAAAAAAGTTTACTTCGACTTGGATATACCTTTCTGCTTTCGTATTTTTATGGAAAATTGGTGCACTTCAAGTTAGCTTTCCTCGGTGCTGATAACGTACATTGTATTATTTGTTCGTATTCAGGGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAGGTGGGTAATGGTTTATAGCTTTTTTTCTTTCGATTCTCTTTTAATTTCTTGAAGAATGAATTTAGATTCCAATTGTTTTATCCATAGCTCTGGAAACTCGGATTTTGCAGGTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACGGTACTTTAACTTCCTTCTAGTTTGATGTACTTTATGCTACTCTTAAGTAGTTGTTAGTTTATAACTTCCGCTTCTGCAGGAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAGCTTGTTCGAGTCCAATGTCAGAAGGGCAATGTCTGGAGGATATGTAGGAGAAACGTTCTTCCAACGCTGCATATAAACGTCTCAGATGCAGAATCGATTAGTTGATGATGCTTACACCAGAAGTTGAAGGCTCTGAAAGTCTGTGAAGTTGGGACCAGGAAGAACCATTTTTACATGTGAAAAAGATTTGAGTGCAAAAATGTTATTAGATATTTGCAAAACTTAAAACCTGCAGAACGTTTTCTGTATGTAAGTGTTAAAACTGAAGCTGTTAAGAGACCCTTTGCCTGGATGAATTTATGTACAATCTGAACTTATGTTTTCGCGATCTTGCGCTTCAATTATCGTATTATTTAT</genome_strand>
        <mrna_strand>AGAGGATACCTTTCTATTAAA..................................................................................................................ATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGT............................................................................................................................................................................GGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAG..............................................................................................................GTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACG...............................................................................GAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAGCTTGTTCGAGTCCAATGTCAGAAGGGCAATGTCTGGAGGATATGTAGGAGAAACGTTCTTCCAACGCTGCATATAAACGTCTCAGATGCAGAATCGATTAGTTGATGATGCTTACACCAGAAGTTGAAGGCTCTGAAAGTCTGTGAAGTTGGGACCAGGAAGAACCATTTTTACATGTGAAAAAGATTTGAGTGCAAAAATGTTATTAGATATTTGCAAAACTTAAAACCTGCAGAACGTTTTCTGTATGTAAGTGTTAAAACTGAAGCTGTTAAGAGACCCTTTGCCTGGATGAATTTATGTACAATCTGAACTTATGTTTTCGCGATCTTGCGCTTCAATTATCGTATTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326500" ref_strand="+" ref_description="SGN-U326500        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT1G75080.1 | Symbol: None | brassinosteroid signalling positive regulator (BZR1), identical to to BZR1 protein (Arabidopsis thaliana) gi:20270971:gb:AAM18490 | chr1:28189165-28191071 FORWARD | Aliases: F9E10.7, F9E10_7 (evalue: 4e-80, score=295) genbank/nr: gi|14626761|gb|AAK71662.1| mature anther-specific protein LAT61 [Lycopersicon esculentum](evalue: 8e-134, score=480)">
      <seq>aagcgagaaacaacaacaacaaaatcatgatgtgggaagctggagaatcaccagcatcttcttcggccggtgccggagctggtggaagtggaggtgccggagttggtttaccggaaagtggtggtggtggtggtggtgggagaaggaaaccatcatggagagaaagagagaataacaggagaagagagaggaggaggagagctgtagctgctaagatttatactggtttaagagctcaaggaaactataatcttccgaagcactgtgataacaatgaagttcttaaagctctttgtactgaagctggttggatcgttgaacctgatggtaccacttatcgcaagggatgcaagccaaccccgatggagattggaggcacttcaacaaacatcacgccaagttcttcacggcatccaagtcccccatcatcatactttgctagcccaattccatcttatcagccaagtccaacttcctcttctttccccagtccatctcgtgctgatgccaacatgttatcacatccatattcttttctccaaaatgtcgttccttcatcccttcctccattacgaatatcaaacagtgcccctgtaactccacctctttcatcaccaactaggcatcctaagcaaactttcaatttagaaactttggccaaagaatcaatgtttgctttaaacatccctttctttgctgcttcagccccagcaagcccaactagggttcagcgttttactcctccaactatacccgagtgtgatgaatctgactcatctaccattgattcaggccagtggatcaactttcaaaagtatgcgtcaaatgttccaccttctccaacatttaatcttgtaaaacctgtgcctcagccgcttcgtcctaatgatatgatcacagacaagggtaagagcatagacttcgactttgaaaatgtatcagtcaaggcatgggaaggtgaaaggattcacgatgtaggattcgatgatctggaactcacacttggaagtggcaatgctcgcatatgattgagattctctgatttagttagctgatgaagcactttgcattccagtggattattccagcctcgtctggtgagatattgcccaaacgtagagcttgcatgaatctctgttgctacttaccttatgtataacattccttccccccttatttgaaaagcccccttcaaaatttatacaggtcttatcacaagcatttcgtgtagatatatgcttgcttctatggtcgagaatcaatttcttcattgtagactagatgaagcttcttcacaactatgaactatccatatttgtctattagaactcgttttcttttctttctgttggaactagctacagttgaagtcgatgatgtaccttgtagtctctctgatgtttttcgtgcacatcatgaaagacatgaaacgcgttacagtttatacattggagattttgtgttgtgtttggttgaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0012E19.1" temp_strand="+" temp_description="C12HBa0012E19.1  AC232945.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0012E19*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="100557" stop="103800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100857" g_stop="101200" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101201" i_stop="102364" i_length="1164">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102365" g_stop="103497" g_length="1133"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="1478" r_length="1134" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1479" polyA_stop="1502"/>
      <MATCH_line gen_id="C12HBa0012E19.1" gen_strand="+" ref_id="SGN-U326500" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1477</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0012E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100857" e_stop="101200"/>
          <exon e_start="102365" e_stop="103497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGAGAAACAACAACAACAAAATCATGATGTGGGAAGCTGGAGAATCACCAGCATCTTCTTCGGCCGGTGCCGGAGCTGGTGGAAGTGGAGGTGCCGGAGTTGGTTTACCGGAAAGTGGTGGTGGTGGTGGTGGTGGGAGAAGGAAACCATCATGGAGAGAAAGAGAGAATAACAGGAGAAGAGAGAGGAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCGAAGCACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAGGTTTTTCAATTTTTTTCCCTCTTCAATTTGCTTGATTCTTAGGTTAATTTCTATGTTTTTGGTGAACCCCATTACTGGGTTTTGCTTGGATTTGCTTAGATCTACAGGTTTGACAAATAGGTTTGCTTTTTTTTGGATCTAGATTGTATGGATTTTAGCATATATGAGCATCAATTTTTAAGTTGCTAAGCTTCTGGATTTGCTGAATTTCTTTGTTTTGCCTGTTTATTGTTCTTGTATGTTGGTTATTTTGAGAAATTAGAGTGATCTAGTGTATAGTTTTGTTAGAAACTGGAAGTGGTTTTTAGGGGGAAATGATTCAACTTTCCAGTTCAATTGTTGTTAATTTGGTAGTGCAAAAAGGGTGTCTTTGTTTGGAGCTTCTGGGGGTGGAGTTGGATGCCTTCGAGTTTCGCCTTAGGCTATGTTGCTTCGACTCTTCAAAATACCGATGGGTGTGTGTCGGATCCTCCAAGATTAGTGCATTGTTGTAGGATCTGCACAGGTATGAAATTGGAGAGACCGAGCAAGATAGGCTAAGGCGATAGTATCCAGCTTCACCCCAAAAGCTCCAAATAAAAGGACCTGTTTTTCATTACCAAATTAACAACAATTGAACTGGAAAGTTCAATCATTTTCCGTCCCGATGAGTGTGTGTCGAATCCTCCAAGATTAGTGCATTTTTGAAGGATCCGCATAGGTACGATATTGGTAAGTTTGAGCATCATGACCTTAGGTGTTTTTTTTTTCTGTAGTGAATGCTTGCCGAGATTCCAAATTTGTTTTTTGTTGAGGTTTCTTTTATTAGCTCAATTGCCGCGCTTTTCTCTCTGAAATCTCAAATTTCATGAGAACATTCGTGTTAGTGTTTTCTGAGTTTGTCCATATTAATTGCGTGGTTTGGGATTTAGAACTTAACCAATAAGCAATATTTGAGGTGAAGACATTTGCTGCTAGAATAATATGATCTCCCCGTTGGGTTGAGCGTTGGATCAATTTTCTGTGTTGTTATGTTATCCTGCAAATTATCTCTCTGAAACTCAAATATTACTAAACTAAAGTGTGTGGCTTGGTTAACTTAACAATATGCAAAACTTGGGATCTGTTTTAGGTAAATTATAATCTCTTTGATACTGACTTTGTTTCAACTATTATGTGATTCAGGGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCATCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCTCGTGCTGATGCCAACATGTTATCACATCCATATTCTTTTCTCCAAAATGTCGTTCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTAAGCAAACTTTCAATTTAGAAACTTTGGCCAAAGAATCAATGTTTGCTTTAAACATCCCTTTCTTTGCTGCTTCAGCCCCAGCAAGCCCAACTAGGGTTCAGCGTTTTACTCCTCCAACTATACCCGAGTGTGATGAATCTGACTCATCTACCATTGATTCAGGCCAGTGGATCAACTTTCAAAAGTATGCGTCAAATGTTCCACCTTCTCCAACATTTAATCTTGTAAAACCTGTGCCTCAGCCGCTTCGTCCTAATGATATGATCACAGACAAGGGTAAGAGCATAGACTTCGACTTTGAAAATGTATCAGTCAAGGCATGGGAAGGTGAAAGGATTCACGATGTAGGATTCGATGATCTGGAACTCACACTTGGAAGTGGCAATGCTCGCATATGATTGAGATTCTCTGATTTAGTTAGCTGATGAAGCACTTTGCATTCCAGTGGATTATTCCAGCCTCGTCTGGTGAGATATTGCCCAAACGTAGAGCTTGCATGAATCTCTGTTGCTACTTACCTTATGTATAACATTCCTTCCCCCCTTATTTGAAAAGCCCCCTTCAAAATTTATACAGGTCTTATCACAAGCATTTCGTGTAGATATATGCTTGCTTCTATGGTCGAGAATCAATTTCTTCATTGTAGACTAGATGAAGCTTCTTCACAACTATGAACTATCCATATTTGTCTATTAGAACTCGTTTTCTTTTCTTTCTGTTGGAACTAGCTACAGTTGAAGTCGATGATGTACCTTGTAGTCTCTCTGATGTTTTTCGTGCACATCATG-AAGACATGAAACGCGTTACAGTTTATACATTGGAGATTTTGTGTTGTGTTTGGTTGAAG</genome_strand>
        <mrna_strand>AAGCGAGAAACAACAACAACAAAATCATGATGTGGGAAGCTGGAGAATCACCAGCATCTTCTTCGGCCGGTGCCGGAGCTGGTGGAAGTGGAGGTGCCGGAGTTGGTTTACCGGAAAGTGGTGGTGGTGGTGGTGGTGGGAGAAGGAAACCATCATGGAGAGAAAGAGAGAATAACAGGAGAAGAGAGAGGAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCGAAGCACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCATCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCTCGTGCTGATGCCAACATGTTATCACATCCATATTCTTTTCTCCAAAATGTCGTTCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTAAGCAAACTTTCAATTTAGAAACTTTGGCCAAAGAATCAATGTTTGCTTTAAACATCCCTTTCTTTGCTGCTTCAGCCCCAGCAAGCCCAACTAGGGTTCAGCGTTTTACTCCTCCAACTATACCCGAGTGTGATGAATCTGACTCATCTACCATTGATTCAGGCCAGTGGATCAACTTTCAAAAGTATGCGTCAAATGTTCCACCTTCTCCAACATTTAATCTTGTAAAACCTGTGCCTCAGCCGCTTCGTCCTAATGATATGATCACAGACAAGGGTAAGAGCATAGACTTCGACTTTGAAAATGTATCAGTCAAGGCATGGGAAGGTGAAAGGATTCACGATGTAGGATTCGATGATCTGGAACTCACACTTGGAAGTGGCAATGCTCGCATATGATTGAGATTCTCTGATTTAGTTAGCTGATGAAGCACTTTGCATTCCAGTGGATTATTCCAGCCTCGTCTGGTGAGATATTGCCCAAACGTAGAGCTTGCATGAATCTCTGTTGCTACTTACCTTATGTATAACATTCCTTCCCCCCTTATTTGAAAAGCCCCCTTCAAAATTTATACAGGTCTTATCACAAGCATTTCGTGTAGATATATGCTTGCTTCTATGGTCGAGAATCAATTTCTTCATTGTAGACTAGATGAAGCTTCTTCACAACTATGAACTATCCATATTTGTCTATTAGAACTCGTTTTCTTTTCTTTCTGTTGGAACTAGCTACAGTTGAAGTCGATGATGTACCTTGTAGTCTCTCTGATGTTTTTCGTGCACATCATGAAAGACATGAAACGCGTTACAGTTTATACATTGGAGATTTTGTGTTGTGTTTGGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344511" ref_strand="+" ref_description="SGN-U344511        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:17569005-17572599 FORWARD | Aliases: T2E6.19, T2E6_19(evalue: 4e-87, score=318) genbank/nr: unknown(evalue: 3e-85, score=318)">
      <seq>ttcacagaagaattgtttgtgtatacatgctcaaagaaagctaaaaagctgctgtctttgcaatccttttttactaatgtctatatagatcaagaggccggtgggccttgagtgaaccttaatttcagtagtgaaaggaaaatgaccacaaaaccaaagaaaggatggaaatcaatttcgtctctcaatttgaagaccaaatcagcagcacatttttgtttgctccccaaatcaaagtcggatcgatatggtcctggcgacacacctgtttatctcaacgtgtatgacttgactcctatgaacggctatgtatattgggttggccttggtatttttcattctggtgtggaagttcatggtgtagaatatgcatttggagctcatgactattcaagcagtggtgtctttgaagttgaaccacgacaatgcccggggttcaagtttaggaagtccatattcattggggttacaaagttggatccctgtcaggttagagagtttatcgaacgtcaagctgctagctataatggtgacacatatcatttgatttcgaagaactgcaaccatttttgcaacgatacatgctacaagctcaccgggaaaaagattccaaagtgggtaaaccgacttgcaaaattaggttcatcattcaactgcatgctacccgaggctctaaaagttgccgcggtggaacatgacccctatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0012E19-R8EyC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0012E19.1" temp_strand="-" temp_description="C12HBa0012E19.1  AC232945.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0012E19*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="112034" stop="106894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111734" g_stop="111649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111648" i_stop="109030" i_length="2619">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109029" g_stop="108764" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="352" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108763" i_stop="108001" i_length="763">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108000" g_stop="107713" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="640" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107712" i_stop="107263" i_length="450">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107262" g_stop="107194" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="709" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0012E19.1" gen_strand="-" ref_id="SGN-U344511" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0012E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111734" e_stop="111649"/>
          <exon e_start="109029" e_stop="108764"/>
          <exon e_start="108000" e_stop="107713"/>
          <exon e_start="107262" e_stop="107194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAGAAGAATTGTTTGTGTATACATGCTCAAAGAAAGCTAAAAAGCTGCTGTCTTTGCAATCCTTTTTTACTAATGTCTATATGTAAGTCTTTCTTCTTCTTGAATTTTTGTTGTTGTTTCTTGAAAAAGCTTTCCCTTTGTTGTTGTTGTTGTGTGTAAAGATTGGATCTTTTTCACTTAATTCTTGGCTAAAGTTTGTGTTTGTTCAAGAATTGCTTTAAAATTTCAATCTTGCTGCAAGATCTGATAGTATAACTGGTATTTTCACAAGTTTTGATATGCTAATTTAGCCTGATTGCTTTGGTTTCCTTTTTTTCTTTCATTAGGTTTTCCATAAATATGCAAATTGTGTGTTGAATGAGAAATTTTTGGTGGTTTCCTTATGTGTGTATGGGGAAAATAGCATTTTAAGACATGGGTTTTGGATGAAAAGTTTGAAAGAATGAGTTTTTGTTGTAAAACCTTTGAATTTAAGTAGTTGAGTTAGAGAAATAGGTTGTGCTTTGAGGGGTAAAGTAGGAAATGTAATTAGCTTCGACGTGGCGGCGATTACATGTCTTTAGAGAGGTAGTAGTTGGTTTTTGTTGAATTAGTAGTAATTGATTCTGCTTGGCACATCTGGAGCAAAATAGAGTTATGTGTTTCGATGGATGTTGACAATTGCGTAATGATTGATATTTGATTCAATCTGTTTACGTTCCTTGCTTTTGACTTGGACTTCGAATCCTCTACCCCGAGGTGAGGTAAGGATGTTATTTAACTCTTTTTTGTTGGAAATAAGTAGGTAAGAGATGTTGTTATTAGTCTTTTGATGTCCTTTGTGAACGATCATTACTTTTTTGTTTTCGCATTTTCTATTTGACATCTATATTTAGCAGTTTGTTTGGTTTCTTGAATTTATATTCATCTTTTGAACCAGGATTTGTTCGCTATCCAAGAATGGATGTGAGCTTAAGGTTTCTTATAAAATTTACGTAGATCCTAAGCGTAAAGCATGTACATTTATGAGAAATGATTAATTAGGAAGTTAACATATTTTCTATTGGAACCATTAGCGAGATCGTTAGAGCTGAAGAAGAGTCAACTTAGTTTCCTTTTCACAACTGAGTTGAATTTGACTTTATGGTTCAAGGTAGTAATGGTTTGACAAGGGAATACGCAACCGCTATCCTTTGGGTGTGCGCATAGGAAAGTGTTTTCTTATGCGTATCTCTTCGTATTTATTGCTGCTAGATATTCAATTGTGCATATATGTTTCTAAATTAGCAAATTTATCCCTTATATTGGCCGATGAATAGATATTGTATTTATCCCTTGAAATGAACTTTGACTTTTTTTTAAAACTACAAGTAGATTAAAGAAAAAGACAATACTGGATGCACGCGACAGATTATAGTATACATTAGTGGTTCCCCACTCATACATATAGTAGACTTCTCTTTGAAGTTGAAAGAGACAGATATCCTATTTCTATTCTTTTCGTCCCTTTCATCATCTTTCTCCCTTCTGAAGATTCATTCTTATATTCCTTCTAGGAAATTTCCTTGGCATTGATTACCGACATTTTCCCCCTTCTGCCGAACACTTAATCTATTGTTGAACATTTTAAGGTTCGTTGAATACCGACATTTACCCCCTTCGGTCGAGCACTTAATCGATTATTGAAGATTTCAAGGTTGAGAAGTTAGAGTAGGGGCTATTTCACTAGGAAAGCTGCACAAGCAGATTACTCTATATTCTCAAAGGGTCAAACGGGGTATCATGGACCAGCTAACTTGATAAGTGAAATACGCTGTTATCAAAAGAACACTTCTATACCTTACTGCAAAAAGGAAATTGAGTTTCCATATTTCATGATCTAGTGTGAAGTTGGATAGAGAACGTAGTTTGGAAAGCAAGGCATATAATGCGGATGATGATCTCATGTTCATCAAAGTTTTTTTTTTGGAGGGACGGAGTAAAATGTCATCGAGCAAACGGTTTATCGTTTAGATCATCTCTCTGGTTCTTTACCTTCTTATTGAATGTATCAATAAATCTCTCATAAGCCTTATTCAGTTATAGTGCTAATCAACAACGCGTGCTCCATTGGGTTTTGCTGATGATCACGCTTCTTCTCAAGTCTCCCTACATTGTACTCAAAGTTGTTTAGATCAGGAAAGAAATATCACGTCAGTACAATGTCAGTGTAAGGCCAAAACTTTACCTGAATAGTTTAAAATTTTGTTTCCTCGCTATCGGTGCTAAGGCACGTGATATAGCTTAGTACAATAAACCAATTATGGTATAAAATGAGAACTCTAACTTGTAAAATCTGTAGGAAGCTAGTAATCCAATGGTCAACTAGTATGAGTTTTATTAGGTGACGGAAGTCATTTTTTTTGGGCTTGTTTTAGTGAAATGATATGTCTATAGTTGCGGAGATAAAGCACAGGTGTTGTAAAGCATTTCACCGATATTATTACATGCCTAACATTATCTAGTGCAGGATTTTCACATTCAGTAATACGATCATATTGAAATATTGCGATCAAACAGCCATGATATTGATCTTTCTGTGGTTCACTTCCTTATTTTCTCGTTCTCTGTTCGTTCTTTACTTTATTTTATTCTGAGTTTTCATTTTTTTACGAGTTTCATTCTTCGGGTTTCTGGATTCTTAAAGTTCCTGAAGTTTCCTTATGCTGCTTGGTTCATGCAGAGATCAAGAGGCCGGTGGGCCTTGAGTGAACCTTAATTTCAGTAGTGAAAGGAAAATGACCACAAAACCAAAGAAAGGATGGAAATCAATTTCGTCTCTCAATTTGAAGACCAAATCAGCAGCACATTTTTGTTTGCTCCCCAAATCAAAGTCGGATCGATATGGTCCTGGCGACACACCTGTTTATCTCAACGTGTATGACTTGACTCCTATGAACGGCTATGTATATTGGGTTGGCCTTGGTATTTTTCATTCTGGTGTGGAAGGTACAGTCTTGTTAGATTTTCCATCTTACCTTTTTTGTTATTCACGGCTAGTTGTTTGTCGATGTACACATGCGATATCCATTTTTTGATATCGATATGTTGCTTATATATTGCTTTTCCTAGTTCTGTTTGATCTAATATACTGCAGTATGTTTCATTACCCGATGAATTAGTTTGTCTATCTTGACTTTTGTTTTAGCTAATTAGCTGAAGTCTTGCGTTCAGATTCAGAACCGAAACTTGTTGGATATATCCATGTAGAATCCAACCTGTAAATGTGATTTATTTCATTCAAGAACAGATAGACGCATTTAATTAGTATCGATAGGCTAGCTTATAGTGGGAAATCTAATTCAAGTTTGAAGTTAATCGAACATAAGTCAACTTTGCTTTCCGTTCTTCGGTCTTAAACATGTAGACAACAGTCTTATATTTGAGGGATTGGAAAGTTATGGAGTGTGTAACAAATATATTAGTTTTCCACATTTTGGTTATTCCAAATTCGTTCATTTACGGAATATCATACAGAAGTCTTTTCTGCATCTATTTTTTACTTCTATTTTGGTTAATCCCCTTAAGAAAGCCTTATGTGGGACATTCCGACAGGGGAATCCCGAAGAAGTGTTAACGGTTGACCATTGCATGTTATAGTTTTATGAGGAAGTAGGAAGCCATATGTGAAACTTAACGTGGAGATTAGTTGTATTACTATTTGGCGCCTCATATTTTTGTACGTTCGGTGAAACTGACCCATATTTTACAGTTCATGGTGTAGAATATGCATTTGGAGCTCATGACTATTCAAGCAGTGGTGTCTTTGAAGTTGAACCACGACAATGCCCGGGGTTCAAGTTTAGGAAGTCCATATTCATTGGGGTTACAAAGTTGGATCCCTGTCAGGTTAGAGAGTTTATCGAACGTCAAGCTGCTAGCTATAATGGTGACACATATCATTTGATTTCGAAGAACTGCAACCATTTTTGCAACGATACATGCTACAAGCTCACCGGGAAAAAGATTCCAAAGTGGGTAAACCGACTTGCAAAATTAGGTAATCCTCTGTCATTTCACCTCTCTTTAGTTAACAATAACTACAACTAATAGTGCCTACAAGCATCTTTCTCTAGATTTATCTATGGACTCGGTCTCGGAGAACTAACCTCATAAATTAATGTGCTTCATAATGACAATCTGATTATGTTTGGTATGAAGGAGATCATTATATGGAAAATGTTTTTCTATTTTTCTATGTTTGGTTGGTCAAAATATTTCCAAAATCATTTTCTTCTGGAAAACAAGTTTCTTACAAATCATGATCTCTTCGTTGGAATAGGAATACAAGTTCCATAAATGACATTCCACGTTGATTGTCTTCTTCCTACCCCCGATCCCCCATCACGCCTCCTCCACCTGCATAAAAGTTCTGAAAAGGAAAATTTTGTCTAGTTATCTCATGGTGTTTTCGAACTTATTAAGGATTTTGTATGATATGCCTCCGTAGGTTCATCATTCAACTGCATGCTACCCGAGGCTCTAAAAGTTGCCGCGGTGGAACATGACCCTAATGGAC</genome_strand>
        <mrna_strand>TTCACAGAAGAATTGTTTGTGTATACATGCTCAAAGAAAGCTAAAAAGCTGCTGTCTTTGCAATCCTTTTTTACTAATGTCTATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAAGAGGCCGGTGGGCCTTGAGTGAACCTTAATTTCAGTAGTGAAAGGAAAATGACCACAAAACCAAAGAAAGGATGGAAATCAATTTCGTCTCTCAATTTGAAGACCAAATCAGCAGCACATTTTTGTTTGCTCCCCAAATCAAAGTCGGATCGATATGGTCCTGGCGACACACCTGTTTATCTCAACGTGTATGACTTGACTCCTATGAACGGCTATGTATATTGGGTTGGCCTTGGTATTTTTCATTCTGGTGTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGGTGTAGAATATGCATTTGGAGCTCATGACTATTCAAGCAGTGGTGTCTTTGAAGTTGAACCACGACAATGCCCGGGGTTCAAGTTTAGGAAGTCCATATTCATTGGGGTTACAAAGTTGGATCCCTGTCAGGTTAGAGAGTTTATCGAACGTCAAGCTGCTAGCTATAATGGTGACACATATCATTTGATTTCGAAGAACTGCAACCATTTTTGCAACGATACATGCTACAAGCTCACCGGGAAAAAGATTCCAAAGTGGGTAAACCGACTTGCAAAATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCATTCAACTGCATGCTACCCGAGGCTCTAAAAGTTGCCGCGGTGGAACATGACCCCTATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>13</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3895" PGL_stop="421"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3895" e_stop="3621"/>
            <exon e_start="2695" e_stop="2385"/>
            <exon e_start="2307" e_stop="2122"/>
            <exon e_start="783" e_stop="421"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.745" e_score="0.993"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="3895" e_stop="3621" e_length="275"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.745">
            <gDNA_intron_boundary i_start="3620" i_stop="2696" i_length="925"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2695" e_stop="2385" e_length="311"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2384" i_stop="2308" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2307" e_stop="2122" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="2121" i_stop="784" i_length="1338"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="783" e_stop="421" e_length="363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3895" stop="3621"/>
              <exon start="2695" stop="2385"/>
              <exon start="2307" stop="2122"/>
              <exon start="783" stop="421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325892" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGCGCAAAACAAAAAGGGTGGGTGTGAGTGACTACAAAACTTGGGAGGAGTTGTAAAAAGTTCATTGGGACTCTTGAAAATTTTCAATCTGCTCATCAAGTAAAGCAAAAACTTACCATAAAATGCAGAAATTGAAGCTGATACGATCACTCTATCGTTCTGTATATCGCAGATCTTCAGCTTTCTCAGTTTCTACCGCCGCAGCTGCCGCCGTCAACCACCACTTCCATCGGGACCTTCATTTTTCAGCTTCTCCTAGAACCCCTTTTCGTG : AATTGCGACATCCTTTGACAAAGGCAATAGGAAGCACACGTTCTTTTAGTGAGGATGTGACCGACATGCCTGACATAGAAGATTTGGAGATCAAACGAGCTTTTAAGGACTTGATGGCTGCAAGCTGGGATGAGCTCCCAAATGCAGTTGTTGGTGATGCAGAGAATGCATTGACAAAAAGTACTGATGACAAAGCTGGTCAGGAAGCCTTGATTAATGTTTTCCGTGCAGCAGAGGCAGTGGAGGAGTTCACAGGAATTCTCACATCTCTGAAAATGGAGATGGATGACGCGATTGGTTTAAGTGGTGAG : AATGTGAAGCCTATGTCAAAAGAATTCTCTGAAGCATTCCAAACAATACTTCAACGTTACAACACTTACTTAAGTGCTTTTGGGTTAGAAGAGGTATACTTGAAGAAGAAAGTGGAGATGGAACTAGGGACAAAGATGATACACTTGAAAATGAGATGCAGTGGCCTTGATTCCGAATGGGGAAAG : GTTACAGTACTTGGGACTTCAGGACTGGCTGGTTCCTATGTTGAGCAAAGAGCATAAGCCTTCAATGATGGCTGAAAAGTCAGAAGTGTTTTCGCCTTCAAGTCACTTACGTAACATTTTCCTGGAAAAAGAAAAGGAAGTTTTAGATAATACAGGATGATATTGATGTGATCCGTTAAATTGCACTCTTCTTTCGCAAGTTTTATAATGTGATAGCAGCAATATGTAGTTGATACTAATCCTAATAACTTCTTCAAGGAGACAGTTTCCTGAGTATTCAGAATGAGAGTGTTTTATGTCAATTGATTCCGGTTTACTGATGAATTTGGCGCTGTGATTTAATTTTTCTTGATTGATTATTGG</gDNA_template>
            <first_frame> L  A  Q  N  K  K  G  G  C  E  *  L  Q  N  L  G  G  V  V  K  S  S  L  G  L  L  K  I  F  N  L  L  I  K  *  S  K  N  L  P  *  N  A  E  I  E  A  D  T  I  T  L  S  F  C  I  S  Q  I  F  S  F  L  S  F  Y  R  R  S  C  R  R  Q  P  P  L  P  S  G  P  S  F  F  S  F  S  *  N  P  F  S  * :   I  A  T  S  F  D  K  G  N  R  K  H  T  F  F  *  *  G  C  D  R  H  A  *  H  R  R  F  G  D  Q  T  S  F  *  G  L  D  G  C  K  L  G  *  A  P  K  C  S  C  W  *  C  R  E  C  I  D  K  K  Y  *  *  Q  S  W  S  G  S  L  D  *  C  F  P  C  S  R  G  S  G  G  V  H  R  N  S  H  I  S  E  N  G  D  G  *  R  D  W  F  K  W  *   : E  C  E  A  Y  V  K  R  I  L  *  S  I  P  N  N  T  S  T  L  Q  H  L  L  K  C  F  W  V  R  R  G  I  L  E  E  E  S  G  D  G  T  R  D  K  D  D  T  L  E  N  E  M  Q  W  P  *  F  R  M  G  K   : G  Y  S  T  W  D  F  R  T  G  W  F  L  C  *  A  K  S  I  S  L  Q  *  W  L  K  S  Q  K  C  F  R  L  Q  V  T  Y  V  T  F  S  W  K  K  K  R  K  F  *  I  I  Q  D  D  I  D  V  I  R  *  I  A  L  F  F  R  K  F  Y  N  V  I  A  A  I  C  S  *  Y  *  S  *  *  L  L  Q  G  D  S  F  L  S  I  Q  N  E  S  V  L  C  Q  L  I  P  V  Y  *  *  I  W  R  C  D  L  I  F  L  D  *  L  L  </first_frame>
            <second_frame>  *  R  K  T  K  R  V  G  V  S  D  Y  K  T  W  E  E  L  *  K  V  H  W  D  S  *  K  F  S  I  C  S  S  S  K  A  K  T  Y  H  K  M  Q  K  L  K  L  I  R  S  L  Y  R  S  V  Y  R  R  S  S  A  F  S  V  S  T  A  A  A  A  A  V  N  H  H  F  H  R  D  L  H  F  S  A  S  P  R  T  P  F  R   : E  L  R  H  P  L  T  K  A  I  G  S  T  R  S  F  S  E  D  V  T  D  M  P  D  I  E  D  L  E  I  K  R  A  F  K  D  L  M  A  A  S  W  D  E  L  P  N  A  V  V  G  D  A  E  N  A  L  T  K  S  T  D  D  K  A  G  Q  E  A  L  I  N  V  F  R  A  A  E  A  V  E  E  F  T  G  I  L  T  S  L  K  M  E  M  D  D  A  I  G  L  S  G  E  :  N  V  K  P  M  S  K  E  F  S  E  A  F  Q  T  I  L  Q  R  Y  N  T  Y  L  S  A  F  G  L  E  E  V  Y  L  K  K  K  V  E  M  E  L  G  T  K  M  I  H  L  K  M  R  C  S  G  L  D  S  E  W  G  K  :  V  T  V  L  G  T  S  G  L  A  G  S  Y  V  E  Q  R  A  *  A  F  N  D  G  *  K  V  R  S  V  F  A  F  K  S  L  T  *  H  F  P  G  K  R  K  G  S  F  R  *  Y  R  M  I  L  M  *  S  V  K  L  H  S  S  F  A  S  F  I  M  *  *  Q  Q  Y  V  V  D  T  N  P  N  N  F  F  K  E  T  V  S  *  V  F  R  M  R  V  F  Y  V  N  *  F  R  F  T  D  E  F  G  A  V  I  *  F  F  L  I  D  Y  W </second_frame>
            <third_frame>   S  A  K  Q  K  G  W  V  *  V  T  T  K  L  G  R  S  C  K  K  F  I  G  T  L  E  N  F  Q  S  A  H  Q  V  K  Q  K  L  T  I  K  C  R  N  *  S  *  Y  D  H  S  I  V  L  Y  I  A  D  L  Q  L  S  Q  F  L  P  P  Q  L  P  P  S  T  T  T  S  I  G  T  F  I  F  Q  L  L  L  E  P  L  F  V  :  N  C  D  I  L  *  Q  R  Q  *  E  A  H  V  L  L  V  R  M  *  P  T  C  L  T  *  K  I  W  R  S  N  E  L  L  R  T  *  W  L  Q  A  G  M  S  S  Q  M  Q  L  L  V  M  Q  R  M  H  *  Q  K  V  L  M  T  K  L  V  R  K  P  *  L  M  F  S  V  Q  Q  R  Q  W  R  S  S  Q  E  F  S  H  L  *  K  W  R  W  M  T  R  L  V  *  V  V  R :   M  *  S  L  C  Q  K  N  S  L  K  H  S  K  Q  Y  F  N  V  T  T  L  T  *  V  L  L  G  *  K  R  Y  T  *  R  R  K  W  R  W  N  *  G  Q  R  *  Y  T  *  K  *  D  A  V  A  L  I  P  N  G  E  R :   L  Q  Y  L  G  L  Q  D  W  L  V  P  M  L  S  K  E  H  K  P  S  M  M  A  E  K  S  E  V  F  S  P  S  S  H  L  R  N  I  F  L  E  K  E  K  E  V  L  D  N  T  G  *  Y  *  C  D  P  L  N  C  T  L  L  S  Q  V  L  *  C  D  S  S  N  M  *  L  I  L  I  L  I  T  S  S  R  R  Q  F  P  E  Y  S  E  *  E  C  F  M  S  I  D  S  G  L  L  M  N  L  A  L  *  F  N  F  S  *  L  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0012E19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3816" stop="3621"/>
                    <exon start="2695" stop="2385"/>
                    <exon start="2307" stop="2122"/>
                    <exon start="783" stop="727"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFSICSSSKAKTYHKMQKLKLIRSLYRSVYRRSSAFSVSTAAAAAVNHHFHRDLHFSASPRTPFRELRHPLTKAIGSTRSFSEDVTDMPDIEDLEIKRAFKDLMAASWDELPNAVVGDAENALTKSTDDKAGQEALINVFRAAEAVEEFTGILTSLKMEMDDAIGLSGENVKPMSKEFSEAFQTILQRYNTYLSAFGLEEVYLKKKVEMELGTKMIHLKMRCSGLDSEWGKVTVLGTSGLAGSYVEQRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7737" PGL_stop="9630"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7737" e_stop="7873"/>
            <exon e_start="7982" e_stop="8214"/>
            <exon e_start="8793" e_stop="9051"/>
            <exon e_start="9563" e_stop="9630"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="0.996"/>
          <exon-intron don_prob="0.994" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7737" e_stop="7873" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.964">
            <gDNA_intron_boundary i_start="7874" i_stop="7981" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="7982" e_stop="8214" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="8215" i_stop="8792" i_length="578"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8793" e_stop="9051" e_length="259"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.955">
            <gDNA_intron_boundary i_start="9052" i_stop="9562" i_length="511"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9563" e_stop="9630" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7737" stop="7873"/>
              <exon start="7982" stop="8214"/>
              <exon start="8793" stop="9051"/>
              <exon start="9563" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343214" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTTCTCCTTATTTTCCTCTAAAAACTCTTACAAGGTAGATGAACAAATATTCAACCAAATTTTTTTTTTAAAAATAAATAAATAAATTATTCTTTCATTTCATATGGAGATTCCTAAAATATGGAAACCTCAG : GATTTATTTGTGATTAAATCACCTAAACAATCTTTGAGATTGGTTCTTTTAGTATTTGCTGTGCTTTGTGGAATTTATATATTATCAATGTGTATAAATCAAACAAGTAATTATTTTTTACAAGCTAAATCACTAAGTATTCATGTGATTAATAGACATAATTGTCATTATCCTATTTTTCAAGAAGAAGATATTCATTACTTGCATTTTCCAAAGCCTCAAACTTTTTCCAG : GGAGGAATGTGCTTGCAATCCTGTTCGATTTTTCGCGATTTTATCGATGCAGAGATCAGGGAGTGGATGGTTTGAGACATTGTTAAATAGCCATATGAATGTGAGTTCTAATGGAGAAATTTTTGGTGCAAAATCAAGGAGGACCAATGCTTCAGTAATATTGGAAATTATGGATAATGTCTTTAATCTTGATTGGATTAGTAGTTCATCAAAGAATGAATGTACAGCTGCAATTGGATTTAAGTGGATGCTTAATCAG : GGAGCTTTGGAGTATCATGAGGAGATTGTGGATTACTTCAACAGAAGAGGTGTATCTGCAATATTTCT</gDNA_template>
            <first_frame> F  L  S  P  Y  F  P  L  K  T  L  T  R  *  M  N  K  Y  S  T  K  F  F  F  *  K  *  I  N  K  L  F  F  H  F  I  W  R  F  L  K  Y  G  N  L  R :   I  Y  L  *  L  N  H  L  N  N  L  *  D  W  F  F  *  Y  L  L  C  F  V  E  F  I  Y  Y  Q  C  V  *  I  K  Q  V  I  I  F  Y  K  L  N  H  *  V  F  M  *  L  I  D  I  I  V  I  I  L  F  F  K  K  K  I  F  I  T  C  I  F  Q  S  L  K  L  F  P   : G  R  N  V  L  A  I  L  F  D  F  S  R  F  Y  R  C  R  D  Q  G  V  D  G  L  R  H  C  *  I  A  I  *  M  *  V  L  M  E  K  F  L  V  Q  N  Q  G  G  P  M  L  Q  *  Y  W  K  L  W  I  M  S  L  I  L  I  G  L  V  V  H  Q  R  M  N  V  Q  L  Q  L  D  L  S  G  C  L  I  R :   E  L  W  S  I  M  R  R  L  W  I  T  S  T  E  E  V  Y  L  Q  Y  F  </first_frame>
            <second_frame>  F  F  L  L  I  F  L  *  K  L  L  Q  G  R  *  T  N  I  Q  P  N  F  F  F  K  N  K  *  I  N  Y  S  F  I  S  Y  G  D  S  *  N  M  E  T  S   : G  F  I  C  D  *  I  T  *  T  I  F  E  I  G  S  F  S  I  C  C  A  L  W  N  L  Y  I  I  N  V  Y  K  S  N  K  *  L  F  F  T  S  *  I  T  K  Y  S  C  D  *  *  T  *  L  S  L  S  Y  F  S  R  R  R  Y  S  L  L  A  F  S  K  A  S  N  F  F  Q  :  G  G  M  C  L  Q  S  C  S  I  F  R  D  F  I  D  A  E  I  R  E  W  M  V  *  D  I  V  K  *  P  Y  E  C  E  F  *  W  R  N  F  W  C  K  I  K  E  D  Q  C  F  S  N  I  G  N  Y  G  *  C  L  *  S  *  L  D  *  *  F  I  K  E  *  M  Y  S  C  N  W  I  *  V  D  A  *  S   : G  S  F  G  V  S  *  G  D  C  G  L  L  Q  Q  K  R  C  I  C  N  I  S </second_frame>
            <third_frame>   S  F  S  L  F  S  S  K  N  S  Y  K  V  D  E  Q  I  F  N  Q  I  F  F  L  K  I  N  K  *  I  I  L  S  F  H  M  E  I  P  K  I  W  K  P  Q  :  D  L  F  V  I  K  S  P  K  Q  S  L  R  L  V  L  L  V  F  A  V  L  C  G  I  Y  I  L  S  M  C  I  N  Q  T  S  N  Y  F  L  Q  A  K  S  L  S  I  H  V  I  N  R  H  N  C  H  Y  P  I  F  Q  E  E  D  I  H  Y  L  H  F  P  K  P  Q  T  F  S  R :   E  E  C  A  C  N  P  V  R  F  F  A  I  L  S  M  Q  R  S  G  S  G  W  F  E  T  L  L  N  S  H  M  N  V  S  S  N  G  E  I  F  G  A  K  S  R  R  T  N  A  S  V  I  L  E  I  M  D  N  V  F  N  L  D  W  I  S  S  S  S  K  N  E  C  T  A  A  I  G  F  K  W  M  L  N  Q  :  G  A  L  E  Y  H  E  E  I  V  D  Y  F  N  R  R  G  V  S  A  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0012E19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7826" stop="7873"/>
                    <exon start="7982" stop="8214"/>
                    <exon start="8793" stop="9051"/>
                    <exon start="9563" stop="9628"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IILSFHMEIPKIWKPQDLFVIKSPKQSLRLVLLVFAVLCGIYILSMCINQTSNYFLQAKSLSIHVINRHNCHYPIFQEEDIHYLHFPKPQTFSREECACNPVRFFAILSMQRSGSGWFETLLNSHMNVSSNGEIFGAKSRRTNASVILEIMDNVFNLDWISSSSKNECTAAIGFKWMLNQGALEYHEEIVDYFNRRGVSAIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="9914" PGL_stop="9520"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9914" e_stop="9520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="9914" e_stop="9520" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9914" stop="9520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATGTTTCCTTCCATCATATCAAACACATTGTAAATCGATGTAGCTTTGATCCTTTCATAAACGTTGGCTCATCCGTGTCAACCCTCGAAAAATGCATATTTGACACCATACACACGACAATATTTTTGAAGAGTCAGAGAACGGGAGAAGGAGGGGACGGAAGGCCTTACCTCATACGGAGAATGTGTATGCGATTTATGTGTTCCATTCAACGGTTTAGCATCTTTATCGTACGAGTTAGCGAGCAACGAGATCAACCTGCGTAGCAGATTTCTTCTAAACAGAAATATTGCAGATACACCTCTTCTGTTGAAGTAATCCACAATCTCCTCATGATACTCCAAAGCTCCCTTCAAGTTCATACACATCAACAAGTTGAAAACATCGAAAAAA</gDNA_template>
            <first_frame> A  C  F  L  P  S  Y  Q  T  H  C  K  S  M  *  L  *  S  F  H  K  R  W  L  I  R  V  N  P  R  K  M  H  I  *  H  H  T  H  D  N  I  F  E  E  S  E  N  G  R  R  R  G  R  K  A  L  P  H  T  E  N  V  Y  A  I  Y  V  F  H  S  T  V  *  H  L  Y  R  T  S  *  R  A  T  R  S  T  C  V  A  D  F  F  *  T  E  I  L  Q  I  H  L  F  C  *  S  N  P  Q  S  P  H  D  T  P  K  L  P  S  S  S  Y  T  S  T  S  *  K  H  R  K   </first_frame>
            <second_frame>  H  V  S  F  H  H  I  K  H  I  V  N  R  C  S  F  D  P  F  I  N  V  G  S  S  V  S  T  L  E  K  C  I  F  D  T  I  H  T  T  I  F  L  K  S  Q  R  T  G  E  G  G  D  G  R  P  Y  L  I  R  R  M  C  M  R  F  M  C  S  I  Q  R  F  S  I  F  I  V  R  V  S  E  Q  R  D  Q  P  A  *  Q  I  S  S  K  Q  K  Y  C  R  Y  T  S  S  V  E  V  I  H  N  L  L  M  I  L  Q  S  S  L  Q  V  H  T  H  Q  Q  V  E  N  I  E  K  </second_frame>
            <third_frame>   M  F  P  S  I  I  S  N  T  L  *  I  D  V  A  L  I  L  S  *  T  L  A  H  P  C  Q  P  S  K  N  A  Y  L  T  P  Y  T  R  Q  Y  F  *  R  V  R  E  R  E  K  E  G  T  E  G  L  T  S  Y  G  E  C  V  C  D  L  C  V  P  F  N  G  L  A  S  L  S  Y  E  L  A  S  N  E  I  N  L  R  S  R  F  L  L  N  R  N  I  A  D  T  P  L  L  L  K  *  S  T  I  S  S  *  Y  S  K  A  P  F  K  F  I  H  I  N  K  L  K  T  S  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0012E19.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9913" stop="9647"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVSFHHIKHIVNRCSFDPFINVGSSVSTLEKCIFDTIHTTIFLKSQRTGEGGDGRPYLIRRMCMRFMCSIQRFSIFIVRVSEQRDQPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="12806" PGL_stop="11863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12806" e_stop="12668"/>
            <exon e_start="12500" e_stop="12352"/>
            <exon e_start="12275" e_stop="11991"/>
            <exon e_start="11888" e_stop="11863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.753" e_score="1.000"/>
          <exon-intron don_prob="0.725" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12806" e_stop="12668" e_length="139"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.753">
            <gDNA_intron_boundary i_start="12667" i_stop="12501" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12500" e_stop="12352" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.725" acc_prob="0.987">
            <gDNA_intron_boundary i_start="12351" i_stop="12276" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12275" e_stop="11991" e_length="285"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11990" i_stop="11889" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.923">
            <gDNA_exon_boundary e_start="11888" e_stop="11863" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12806" stop="12668"/>
              <exon start="12500" stop="12352"/>
              <exon start="12275" stop="11991"/>
              <exon start="11888" stop="11863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAAGGTGCCTTGGAAAAAGAAAGTGGTAATTGGGATTCTTCATGTGTCTGCACACCTAGCTGCAGCTGTGATTCTTATGCTCTTGCTCGAATTAGGCATTGAGACATGTATTCGCCATAAACTACTTGCAACTTCTG : GTTATCATACTTTATATGAATGGTACAAATCAGTGGAGAGTGAACATTTTCCAGACCCAACGGGTCTTAAGGAACGAATTGAACACTGGACATTTGGCCTTTATCCGGCATGTATTAAATATCTCATGTCTGCTTTTGATGTTCCTGAG : GTAATGGCAGTTACTAGGAATACTATCTGCAAGAATGGGATGGATTCACTATCTCGAGGGGGTGCTGTAATTTATTATGCATCCGTCTTCCTTTATTTTTGGGTCTTTTCAACTCCGGTGGTTTCTTTGGTATTCGGAAGCTACCTATACATTTGCATTAACTGGCTTCATATACATTTCGACGAAGCCTTTTCATCACTTCGTATTGCTAACTACAAGTCATTTACACGGTTTCATATCAACAACAAAGGCGATCTTGAAGTTTTTACCCTTGCAGTTGATAAG : GTTCCGAAAGAGTGGAAACTAGATCC</gDNA_template>
            <first_frame> S  K  V  P  W  K  K  K  V  V  I  G  I  L  H  V  S  A  H  L  A  A  A  V  I  L  M  L  L  L  E  L  G  I  E  T  C  I  R  H  K  L  L  A  T  S   : G  Y  H  T  L  Y  E  W  Y  K  S  V  E  S  E  H  F  P  D  P  T  G  L  K  E  R  I  E  H  W  T  F  G  L  Y  P  A  C  I  K  Y  L  M  S  A  F  D  V  P  E  :  V  M  A  V  T  R  N  T  I  C  K  N  G  M  D  S  L  S  R  G  G  A  V  I  Y  Y  A  S  V  F  L  Y  F  W  V  F  S  T  P  V  V  S  L  V  F  G  S  Y  L  Y  I  C  I  N  W  L  H  I  H  F  D  E  A  F  S  S  L  R  I  A  N  Y  K  S  F  T  R  F  H  I  N  N  K  G  D  L  E  V  F  T  L  A  V  D  K  :  V  P  K  E  W  K  L  D   </first_frame>
            <second_frame>  P  R  C  L  G  K  R  K  W  *  L  G  F  F  M  C  L  H  T  *  L  Q  L  *  F  L  C  S  C  S  N  *  A  L  R  H  V  F  A  I  N  Y  L  Q  L  L  :  V  I  I  L  Y  M  N  G  T  N  Q  W  R  V  N  I  F  Q  T  Q  R  V  L  R  N  E  L  N  T  G  H  L  A  F  I  R  H  V  L  N  I  S  C  L  L  L  M  F  L  R :   *  W  Q  L  L  G  I  L  S  A  R  M  G  W  I  H  Y  L  E  G  V  L  *  F  I  M  H  P  S  S  F  I  F  G  S  F  Q  L  R  W  F  L  W  Y  S  E  A  T  Y  T  F  A  L  T  G  F  I  Y  I  S  T  K  P  F  H  H  F  V  L  L  T  T  S  H  L  H  G  F  I  S  T  T  K  A  I  L  K  F  L  P  L  Q  L  I  R :   F  R  K  S  G  N  *  I  </second_frame>
            <third_frame>   Q  G  A  L  E  K  E  S  G  N  W  D  S  S  C  V  C  T  P  S  C  S  C  D  S  Y  A  L  A  R  I  R  H  *  D  M  Y  S  P  *  T  T  C  N  F  W :   L  S  Y  F  I  *  M  V  Q  I  S  G  E  *  T  F  S  R  P  N  G  S  *  G  T  N  *  T  L  D  I  W  P  L  S  G  M  Y  *  I  S  H  V  C  F  *  C  S  *   : G  N  G  S  Y  *  E  Y  Y  L  Q  E  W  D  G  F  T  I  S  R  G  C  C  N  L  L  C  I  R  L  P  L  F  L  G  L  F  N  S  G  G  F  F  G  I  R  K  L  P  I  H  L  H  *  L  A  S  Y  T  F  R  R  S  L  F  I  T  S  Y  C  *  L  Q  V  I  Y  T  V  S  Y  Q  Q  Q  R  R  S  *  S  F  Y  P  C  S  *  *   : G  S  E  R  V  E  T  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0012E19.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12806" stop="12668"/>
                    <exon start="12500" stop="12352"/>
                    <exon start="12275" stop="11991"/>
                    <exon start="11888" stop="11865"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKVPWKKKVVIGILHVSAHLAAAVILMLLLELGIETCIRHKLLATSGYHTLYEWYKSVESEHFPDPTGLKERIEHWTFGLYPACIKYLMSAFDVPEVMAVTRNTICKNGMDSLSRGGAVIYYASVFLYFWVFSTPVVSLVFGSYLYICINWLHIHFDEAFSSLRIANYKSFTRFHINNKGDLEVFTLAVDKVPKEWKLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="22578" PGL_stop="20564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22578" e_stop="22412"/>
            <exon e_start="21047" e_stop="20685"/>
            <exon e_start="20603" e_stop="20564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.805" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22578" e_stop="22412" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.805" acc_prob="0.859">
            <gDNA_intron_boundary i_start="22411" i_stop="21048" i_length="1364"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21047" e_stop="20685" e_length="363"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.975">
            <gDNA_intron_boundary i_start="20684" i_stop="20604" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20603" e_stop="20564" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22578" stop="22412"/>
              <exon start="21047" stop="20685"/>
              <exon start="20603" stop="20564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCGTGAAAAAAAAGGTTTCTTGCAGACATCCTCACATAATAAATGTTGCTGAGTCGGTTCCTTAATCCAAACATATATTTATATTCCATATTTAAGCAGACCCAAGTTGCTGTTTTTGCTGTCTGTCTTTCTATTTCTGTATTGGCTTTTGTTTCTTAAATTCAG : TTGTCTCTTGGGATCTAGAATTAATCAGCTATAACTCTTATCACGTAAAGTGGCGTGAAGCCAAGGCTGCTTAATGGGGATCGATAAGCAGCCGAGTGGTATTCTTGATACTCTGAAAATGGAGACAGTCAGGACAATATTTCCCTCGTATCGCTACCCCCACGAGCATTCACGTCATTTTGTGATTGCTGTGGTTGTGGGATGCTTGTTTTTCATATCATCAGATAACATGCACTCACTTATTCAGAAATTCGATATCAAATGGTGGTCTATGTATGCTTGTTTGCTAGGATTCTTTTACTTCTTTTCGTCTCCATTTATTGGGAAAACAATTAAACCAAGTTACTCAAATTTCAGTCGCTG : GTATATTGCCTGGATATTAGTGGCAGCTTTATACCACCTT</gDNA_template>
            <first_frame> F  R  E  K  K  G  F  L  Q  T  S  S  H  N  K  C  C  *  V  G  S  L  I  Q  T  Y  I  Y  I  P  Y  L  S  R  P  K  L  L  F  L  L  S  V  F  L  F  L  Y  W  L  L  F  L  K  F  S :   C  L  L  G  S  R  I  N  Q  L  *  L  L  S  R  K  V  A  *  S  Q  G  C  L  M  G  I  D  K  Q  P  S  G  I  L  D  T  L  K  M  E  T  V  R  T  I  F  P  S  Y  R  Y  P  H  E  H  S  R  H  F  V  I  A  V  V  V  G  C  L  F  F  I  S  S  D  N  M  H  S  L  I  Q  K  F  D  I  K  W  W  S  M  Y  A  C  L  L  G  F  F  Y  F  F  S  S  P  F  I  G  K  T  I  K  P  S  Y  S  N  F  S  R  W :   Y  I  A  W  I  L  V  A  A  L  Y  H  L </first_frame>
            <second_frame>  S  V  K  K  K  V  S  C  R  H  P  H  I  I  N  V  A  E  S  V  P  *  S  K  H  I  F  I  F  H  I  *  A  D  P  S  C  C  F  C  C  L  S  F  Y  F  C  I  G  F  C  F  L  N  S   : V  V  S  W  D  L  E  L  I  S  Y  N  S  Y  H  V  K  W  R  E  A  K  A  A  *  W  G  S  I  S  S  R  V  V  F  L  I  L  *  K  W  R  Q  S  G  Q  Y  F  P  R  I  A  T  P  T  S  I  H  V  I  L  *  L  L  W  L  W  D  A  C  F  S  Y  H  Q  I  T  C  T  H  L  F  R  N  S  I  S  N  G  G  L  C  M  L  V  C  *  D  S  F  T  S  F  R  L  H  L  L  G  K  Q  L  N  Q  V  T  Q  I  S  V  A   : G  I  L  P  G  Y  *  W  Q  L  Y  T  T   </second_frame>
            <third_frame>   P  *  K  K  R  F  L  A  D  I  L  T  *  *  M  L  L  S  R  F  L  N  P  N  I  Y  L  Y  S  I  F  K  Q  T  Q  V  A  V  F  A  V  C  L  S  I  S  V  L  A  F  V  S  *  I  Q  :  L  S  L  G  I  *  N  *  S  A  I  T  L  I  T  *  S  G  V  K  P  R  L  L  N  G  D  R  *  A  A  E  W  Y  S  *  Y  S  E  N  G  D  S  Q  D  N  I  S  L  V  S  L  P  P  R  A  F  T  S  F  C  D  C  C  G  C  G  M  L  V  F  H  I  I  R  *  H  A  L  T  Y  S  E  I  R  Y  Q  M  V  V  Y  V  C  L  F  A  R  I  L  L  L  L  F  V  S  I  Y  W  E  N  N  *  T  K  L  L  K  F  Q  S  L  :  V  Y  C  L  D  I  S  G  S  F  I  P  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0012E19.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20989" stop="20685"/>
                    <exon start="20603" stop="20564"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQGCLMGIDKQPSGILDTLKMETVRTIFPSYRYPHEHSRHFVIAVVVGCLFFISSDNMHSLIQKFDIKWWSMYACLLGFFYFFSSPFIGKTIKPSYSNFSRWYIAWILVAALYHL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="51759" PGL_stop="42897"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51759" e_stop="51564"/>
            <exon e_start="49179" e_stop="49110"/>
            <exon e_start="48866" e_stop="48801"/>
            <exon e_start="47952" e_stop="47838"/>
            <exon e_start="46575" e_stop="46460"/>
            <exon e_start="46239" e_stop="46115"/>
            <exon e_start="44517" e_stop="44065"/>
            <exon e_start="42916" e_stop="42897"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.739" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.689" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.481" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.980"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51759" e_stop="51564" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51563" i_stop="49180" i_length="2384"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49179" e_stop="49110" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.930" acc_prob="0.739">
            <gDNA_intron_boundary i_start="49109" i_stop="48867" i_length="243"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48866" e_stop="48801" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.689">
            <gDNA_intron_boundary i_start="48800" i_stop="47953" i_length="848"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47952" e_stop="47838" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="47837" i_stop="46576" i_length="1262"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46575" e_stop="46460" e_length="116"/>
          </exon>
          <intron i_serial="5" don_prob="0.481" acc_prob="0.982">
            <gDNA_intron_boundary i_start="46459" i_stop="46240" i_length="220"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46239" e_stop="46115" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46114" i_stop="44518" i_length="1597"/>
          </intron>
          <exon e_serial="7" e_score="0.980">
            <gDNA_exon_boundary e_start="44517" e_stop="44065" e_length="453"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44064" i_stop="42917" i_length="1148"/>
          </intron>
          <exon e_serial="8" e_score="0.750">
            <gDNA_exon_boundary e_start="42916" e_stop="42897" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51759" stop="51564"/>
              <exon start="49179" stop="49110"/>
              <exon start="48866" stop="48801"/>
              <exon start="47952" stop="47838"/>
              <exon start="46575" stop="46460"/>
              <exon start="46239" stop="46115"/>
              <exon start="44517" stop="44065"/>
              <exon start="42916" stop="42897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321192" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATGAAAAAGCCCATATTAAGCCCAAAAAAAACACCTGAAAGACAAAAACACACACAAAAAACTTTGCCTTGAGATCTCCTCTACTGATCCAAACAAGGAAGAAGAAGAAGAAGAAGATGACGGTTTTCCACTTCTTCAACTGTGCAATCCTTACATTCGGACCTCATGCTGTCTATTACTCAGCAACCCCTTT : GTCTGAGTATGACACACTGTGGACTTCAATAAAATCTGCGGTTGTTTACCTTTTTACCGCACTAGTTAAG : CTAGTTTGTCTAGCAACATTTCTTAATGTATCTGAAAGTGAAAGCGACAATTTTGATCCATATCAG : GAATTGTTGAAGGCTTTATTTGGCTTTATCGAAGTTGCAGGCCTATATTTTGCATTGACACAGTTGACCCACAGAAATATTTCCCAGAATCATAAGTTTCAAGCTGTTGGACTAG : GGTGGGCTTTTGCTGATTCTGTTCTGCATAGACTGGTACCTCTTTGGTTTGGTGCTAGAGGATTGGAGTTTACATGGGACTACATCTTGCAAGGCCTAGAAGCAAATGCAAATTTG : GTTTTCAGTATATCACTAGCAGCATTGGGTTCTCTTATGTGGCTTCGGAAAAACAAACCCAAGACTTTGATACCTATCATATATGCATGTGCTGGGATTGTGGCAACAATGCCAACCATAACCAG : TTATCTGAGGCGAGGCTTGGGGTGGCACCTTCCAAAAGTAGTTGGCTTTGAGCTTTTCAGCTCATTGCTGATTGCTTTTATCAGTTGGCAATTGTTTGTTGCATGCCAGAGACCGTCTAACTGAGTTGATTACCCATTGGCTCTTCCTCATGGAAGTTTGCGTATGGTTCTTCAGCAATGAGTATGTTCTATCCGGTATTTGGACTAAAGCTTTTTATGTCCTCCTTTACCATTCACTCTGCAAGTCAGGCTTCATAACCTTAAAATATCTTACGAACAAATTTGACGTGGAGGGATTTCATTGGTTAGCAATTTTGACATGTACTGGTTTATGAAAGATTAGAATATATTGATGAATCATTTGGCGTTTACATGTCTGAATATTTATTACATTTCTGAGTTTCACCAATGATCCGGGAGTGTTCCTGCACAAAAGTGCTTTGTATTGATAGA : AAAAAAAGTGAAAAAATCAA</gDNA_template>
            <first_frame> *  M  K  K  P  I  L  S  P  K  K  T  P  E  R  Q  K  H  T  Q  K  T  L  P  *  D  L  L  Y  *  S  K  Q  G  R  R  R  R  R  R  *  R  F  S  T  S  S  T  V  Q  S  L  H  S  D  L  M  L  S  I  T  Q  Q  P  L   : C  L  S  M  T  H  C  G  L  Q  *  N  L  R  L  F  T  F  L  P  H  *  L  S :   *  F  V  *  Q  H  F  L  M  Y  L  K  V  K  A  T  I  L  I  H  I  R :   N  C  *  R  L  Y  L  A  L  S  K  L  Q  A  Y  I  L  H  *  H  S  *  P  T  E  I  F  P  R  I  I  S  F  K  L  L  D  *  :  G  G  L  L  L  I  L  F  C  I  D  W  Y  L  F  G  L  V  L  E  D  W  S  L  H  G  T  T  S  C  K  A  *  K  Q  M  Q  I  W :   F  S  V  Y  H  *  Q  H  W  V  L  L  C  G  F  G  K  T  N  P  R  L  *  Y  L  S  Y  M  H  V  L  G  L  W  Q  Q  C  Q  P  *  P   : V  I  *  G  E  A  W  G  G  T  F  Q  K  *  L  A  L  S  F  S  A  H  C  *  L  L  L  S  V  G  N  C  L  L  H  A  R  D  R  L  T  E  L  I  T  H  W  L  F  L  M  E  V  C  V  W  F  F  S  N  E  Y  V  L  S  G  I  W  T  K  A  F  Y  V  L  L  Y  H  S  L  C  K  S  G  F  I  T  L  K  Y  L  T  N  K  F  D  V  E  G  F  H  W  L  A  I  L  T  C  T  G  L  *  K  I  R  I  Y  *  *  I  I  W  R  L  H  V  *  I  F  I  T  F  L  S  F  T  N  D  P  G  V  F  L  H  K  S  A  L  Y  *  *   : K  K  K  *  K  N  Q </first_frame>
            <second_frame>  E  *  K  S  P  Y  *  A  Q  K  K  H  L  K  D  K  N  T  H  K  K  L  C  L  E  I  S  S  T  D  P  N  K  E  E  E  E  E  E  D  D  G  F  P  L  L  Q  L  C  N  P  Y  I  R  T  S  C  C  L  L  L  S  N  P  F  :  V  *  V  *  H  T  V  D  F  N  K  I  C  G  C  L  P  F  Y  R  T  S  *   : A  S  L  S  S  N  I  S  *  C  I  *  K  *  K  R  Q  F  *  S  I  S   : G  I  V  E  G  F  I  W  L  Y  R  S  C  R  P  I  F  C  I  D  T  V  D  P  Q  K  Y  F  P  E  S  *  V  S  S  C  W  T  R :   V  G  F  C  *  F  C  S  A  *  T  G  T  S  L  V  W  C  *  R  I  G  V  Y  M  G  L  H  L  A  R  P  R  S  K  C  K  F   : G  F  Q  Y  I  T  S  S  I  G  F  S  Y  V  A  S  E  K  Q  T  Q  D  F  D  T  Y  H  I  C  M  C  W  D  C  G  N  N  A  N  H  N  Q  :  L  S  E  A  R  L  G  V  A  P  S  K  S  S  W  L  *  A  F  Q  L  I  A  D  C  F  Y  Q  L  A  I  V  C  C  M  P  E  T  V  *  L  S  *  L  P  I  G  S  S  S  W  K  F  A  Y  G  S  S  A  M  S  M  F  Y  P  V  F  G  L  K  L  F  M  S  S  F  T  I  H  S  A  S  Q  A  S  *  P  *  N  I  L  R  T  N  L  T  W  R  D  F  I  G  *  Q  F  *  H  V  L  V  Y  E  R  L  E  Y  I  D  E  S  F  G  V  Y  M  S  E  Y  L  L  H  F  *  V  S  P  M  I  R  E  C  S  C  T  K  V  L  C  I  D  R  :  K  K  S  E  K  I   </second_frame>
            <third_frame>   N  E  K  A  H  I  K  P  K  K  N  T  *  K  T  K  T  H  T  K  N  F  A  L  R  S  P  L  L  I  Q  T  R  K  K  K  K  K  K  M  T  V  F  H  F  F  N  C  A  I  L  T  F  G  P  H  A  V  Y  Y  S  A  T  P  L :   S  E  Y  D  T  L  W  T  S  I  K  S  A  V  V  Y  L  F  T  A  L  V  K  :  L  V  C  L  A  T  F  L  N  V  S  E  S  E  S  D  N  F  D  P  Y  Q  :  E  L  L  K  A  L  F  G  F  I  E  V  A  G  L  Y  F  A  L  T  Q  L  T  H  R  N  I  S  Q  N  H  K  F  Q  A  V  G  L   : G  W  A  F  A  D  S  V  L  H  R  L  V  P  L  W  F  G  A  R  G  L  E  F  T  W  D  Y  I  L  Q  G  L  E  A  N  A  N  L  :  V  F  S  I  S  L  A  A  L  G  S  L  M  W  L  R  K  N  K  P  K  T  L  I  P  I  I  Y  A  C  A  G  I  V  A  T  M  P  T  I  T  S :   Y  L  R  R  G  L  G  W  H  L  P  K  V  V  G  F  E  L  F  S  S  L  L  I  A  F  I  S  W  Q  L  F  V  A  C  Q  R  P  S  N  *  V  D  Y  P  L  A  L  P  H  G  S  L  R  M  V  L  Q  Q  *  V  C  S  I  R  Y  L  D  *  S  F  L  C  P  P  L  P  F  T  L  Q  V  R  L  H  N  L  K  I  S  Y  E  Q  I  *  R  G  G  I  S  L  V  S  N  F  D  M  Y  W  F  M  K  D  *  N  I  L  M  N  H  L  A  F  T  C  L  N  I  Y  Y  I  S  E  F  H  Q  *  S  G  S  V  P  A  Q  K  C  F  V  L  I  E :   K  K  V  K  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0012E19.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51718" stop="51564"/>
                    <exon start="49179" stop="49110"/>
                    <exon start="48866" stop="48801"/>
                    <exon start="47952" stop="47838"/>
                    <exon start="46575" stop="46460"/>
                    <exon start="46239" stop="46115"/>
                    <exon start="44517" stop="44394"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTKTHTKNFALRSPLLIQTRKKKKKKMTVFHFFNCAILTFGPHAVYYSATPLSEYDTLWTSIKSAVVYLFTALVKLVCLATFLNVSESESDNFDPYQELLKALFGFIEVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLVPLWFGARGLEFTWDYILQGLEANANLVFSISLAALGSLMWLRKNKPKTLIPIIYACAGIVATMPTITSYLRRGLGWHLPKVVGFELFSSLLIAFISWQLFVACQRPSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="62854" PGL_stop="60547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62854" e_stop="62797"/>
            <exon e_start="62435" e_stop="62338"/>
            <exon e_start="62250" e_stop="62142"/>
            <exon e_start="62016" e_stop="61948"/>
            <exon e_start="61502" e_stop="61437"/>
            <exon e_start="61336" e_stop="61247"/>
            <exon e_start="60906" e_stop="60547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62854" e_stop="62797" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62796" i_stop="62436" i_length="361"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62435" e_stop="62338" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62337" i_stop="62251" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62250" e_stop="62142" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62141" i_stop="62017" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62016" e_stop="61948" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.919">
            <gDNA_intron_boundary i_start="61947" i_stop="61503" i_length="445"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61502" e_stop="61437" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.975">
            <gDNA_intron_boundary i_start="61436" i_stop="61337" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61336" e_stop="61247" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.926" acc_prob="0.988">
            <gDNA_intron_boundary i_start="61246" i_stop="60907" i_length="340"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="60906" e_stop="60547" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62854" stop="62797"/>
              <exon start="62435" stop="62338"/>
              <exon start="62250" stop="62142"/>
              <exon start="62016" stop="61948"/>
              <exon start="61502" stop="61437"/>
              <exon start="61336" stop="61247"/>
              <exon start="60906" stop="60547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGCAGTATATCCAAGGACAATCAAGGGATTTGGTTGACCAGGCGTACGCTAAGTTT : GTCACTACAATGTTCCTTACTTTGGATAAAATTGCTAAAGCAGACCCAAAATATGAAGACATTATGCTTTTAGAAAACTATGCAGCATTCCAGAATAG : TCTTTATGACCTGGCTAATATGGTGCCAACATTAGCAAAATTCTATCATGAAGCCAGTGAATCTTATGAACAAGCTTGCACACGCCATATCAATGTGATTATATTCTAT : CAATTTGAGCGACTTTTTCAGTTTGTTCGAAGAATCGAGGATTTGATGTACACAATCCCGCCTGAAGAG : ATTCCCTTCCAACTTGGGCTGTCAAAGATGGATCTTCGGAAGGTGGTAAAATCCAGTTTATCTGGG : GCGGATAAGTCCATCAGTGCAATGTATAAGAGATTGCAGAAAAACTTGACCTCAGAGGAGTTGCTGCCTTCATTATGGGATAAATGCAAG : AAAGAGTTCTTGGACAAGTACGAAAGTTTTGCTCAGCTTGTAGCCAAGATATACCCCAGCGAGAACGTCCCATCTGTTTCAGAAATGCGCGATCTTTTGGCAGCCATGTAAAGAAGCTTTTTGTGAGTTCGATTCTAGTTTTAGTTGTTAGGAAAAGTGTGTTGTAGAGTATGTCTTCTGTTGTCTATTTGTTTTCTGTAGAGCATTTGCCTGTATCGTCCTCGCGCCTTTTTTGTTTTCTTTTAAAGCTATTGTATGAGTTGTCTAAGTTCTTATTTTCAAGTGTAACTGTGGAGGAAGAAGTTTTTATGTTACTACATATCAATTCATCTGTTAGTTATTAAAGAAGTGTTTTCACTA</gDNA_template>
            <first_frame> G  A  V  Y  P  R  T  I  K  G  F  G  *  P  G  V  R  *  V   : C  H  Y  N  V  P  Y  F  G  *  N  C  *  S  R  P  K  I  *  R  H  Y  A  F  R  K  L  C  S  I  P  E  *  :  S  L  *  P  G  *  Y  G  A  N  I  S  K  I  L  S  *  S  Q  *  I  L  *  T  S  L  H  T  P  Y  Q  C  D  Y  I  L   : S  I  *  A  T  F  S  V  C  S  K  N  R  G  F  D  V  H  N  P  A  *  R   : D  S  L  P  T  W  A  V  K  D  G  S  S  E  G  G  K  I  Q  F  I  W   : G  G  *  V  H  Q  C  N  V  *  E  I  A  E  K  L  D  L  R  G  V  A  A  F  I  M  G  *  M  Q   : E  R  V  L  G  Q  V  R  K  F  C  S  A  C  S  Q  D  I  P  Q  R  E  R  P  I  C  F  R  N  A  R  S  F  G  S  H  V  K  K  L  F  V  S  S  I  L  V  L  V  V  R  K  S  V  L  *  S  M  S  S  V  V  Y  L  F  S  V  E  H  L  P  V  S  S  S  R  L  F  C  F  L  L  K  L  L  Y  E  L  S  K  F  L  F  S  S  V  T  V  E  E  E  V  F  M  L  L  H  I  N  S  S  V  S  Y  *  R  S  V  F  T  </first_frame>
            <second_frame>  E  Q  Y  I  Q  G  Q  S  R  D  L  V  D  Q  A  Y  A  K  F  :  V  T  T  M  F  L  T  L  D  K  I  A  K  A  D  P  K  Y  E  D  I  M  L  L  E  N  Y  A  A  F  Q  N  S :   L  Y  D  L  A  N  M  V  P  T  L  A  K  F  Y  H  E  A  S  E  S  Y  E  Q  A  C  T  R  H  I  N  V  I  I  F  Y  :  Q  F  E  R  L  F  Q  F  V  R  R  I  E  D  L  M  Y  T  I  P  P  E  E  :  I  P  F  Q  L  G  L  S  K  M  D  L  R  K  V  V  K  S  S  L  S  G  :  A  D  K  S  I  S  A  M  Y  K  R  L  Q  K  N  L  T  S  E  E  L  L  P  S  L  W  D  K  C  K  :  K  E  F  L  D  K  Y  E  S  F  A  Q  L  V  A  K  I  Y  P  S  E  N  V  P  S  V  S  E  M  R  D  L  L  A  A  M  *  R  S  F  L  *  V  R  F  *  F  *  L  L  G  K  V  C  C  R  V  C  L  L  L  S  I  C  F  L  *  S  I  C  L  Y  R  P  R  A  F  F  V  F  F  *  S  Y  C  M  S  C  L  S  S  Y  F  Q  V  *  L  W  R  K  K  F  L  C  Y  Y  I  S  I  H  L  L  V  I  K  E  V  F  S  L </second_frame>
            <third_frame>   S  S  I  S  K  D  N  Q  G  I  W  L  T  R  R  T  L  S  L :   S  L  Q  C  S  L  L  W  I  K  L  L  K  Q  T  Q  N  M  K  T  L  C  F  *  K  T  M  Q  H  S  R  I   : V  F  M  T  W  L  I  W  C  Q  H  *  Q  N  S  I  M  K  P  V  N  L  M  N  K  L  A  H  A  I  S  M  *  L  Y  S  I :   N  L  S  D  F  F  S  L  F  E  E  S  R  I  *  C  T  Q  S  R  L  K  R :   F  P  S  N  L  G  C  Q  R  W  I  F  G  R  W  *  N  P  V  Y  L  G :   R  I  S  P  S  V  Q  C  I  R  D  C  R  K  T  *  P  Q  R  S  C  C  L  H  Y  G  I  N  A  R :   K  S  S  W  T  S  T  K  V  L  L  S  L  *  P  R  Y  T  P  A  R  T  S  H  L  F  Q  K  C  A  I  F  W  Q  P  C  K  E  A  F  C  E  F  D  S  S  F  S  C  *  E  K  C  V  V  E  Y  V  F  C  C  L  F  V  F  C  R  A  F  A  C  I  V  L  A  P  F  L  F  S  F  K  A  I  V  *  V  V  *  V  L  I  F  K  C  N  C  G  G  R  S  F  Y  V  T  T  Y  Q  F  I  C  *  L  L  K  K  C  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0012E19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62853" stop="62797"/>
                    <exon start="62435" stop="62338"/>
                    <exon start="62250" stop="62142"/>
                    <exon start="62016" stop="61948"/>
                    <exon start="61502" stop="61437"/>
                    <exon start="61336" stop="61247"/>
                    <exon start="60906" stop="60796"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQYIQGQSRDLVDQAYAKFVTTMFLTLDKIAKADPKYEDIMLLENYAAFQNSLYDLANMVPTLAKFYHEASESYEQACTRHINVIIFYQFERLFQFVRRIEDLMYTIPPEEIPFQLGLSKMDLRKVVKSSLSGADKSISAMYKRLQKNLTSEELLPSLWDKCKKEFLDKYESFAQLVAKIYPSENVPSVSEMRDLLAAM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="83085" PGL_stop="78401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83085" e_stop="82761"/>
            <exon e_start="81784" e_stop="81752"/>
            <exon e_start="81668" e_stop="81389"/>
            <exon e_start="80946" e_stop="80463"/>
            <exon e_start="79692" e_stop="79144"/>
            <exon e_start="78841" e_stop="78401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.506" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83085" e_stop="82761" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82760" i_stop="81785" i_length="976"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81784" e_stop="81752" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81751" i_stop="81669" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81668" e_stop="81389" e_length="280"/>
          </exon>
          <intron i_serial="3" don_prob="0.506" acc_prob="0.812">
            <gDNA_intron_boundary i_start="81388" i_stop="80947" i_length="442"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80946" e_stop="80463" e_length="484"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="80462" i_stop="79693" i_length="770"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79692" e_stop="79144" e_length="549"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79143" i_stop="78842" i_length="302"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="78841" e_stop="78401" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83085" stop="82761"/>
              <exon start="81784" stop="81752"/>
              <exon start="81668" stop="81389"/>
              <exon start="80946" stop="80463"/>
              <exon start="79692" stop="79144"/>
              <exon start="78841" stop="78401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCACTCCGATCAAAACTCTCCAAAAAAAAATCCAAAAATCTTCCTTCCCCACGAAGGAATTTCAAGAATCGACAAACCTAGGGATCATCAAAGCGTAAAATTGCTAACTTTTTTGGGGTTTTTCGATTTTTCTCTGTGGGGGGTTTTAGTGTATGTGAAAAATTATGGAGGATTATAGCTATGGGAGCAGCGATGATGATGAATGGGACAATCAACAGTGCAATAATGACGATGAAGACGATGATGATGGTGAATTTCTTGATGGGTTTACGGAAATTGAACAAGAGAGAAACGGAATCTCTGGAAAGGGTCCTTCATGCAAG : GTAATCAGGAAAGAGACTCTTTTAGCTGCACAG : AAAGAAGACTTGCAAAGAGTGATGGACTTGCTATCTCTGAAGGAACATCATGCTCGAAGCTTGCTTATTCATTACCGATGGGAAGTTGACAAGGTCTTTGCGGTTCTTGTTGAGAGAGGGACAGAAATGTTATATGCTGAAGCGGGTGTGACACTGGAAGGGAAAGAGGAACATACTTCCACTCTGTCGACATCTGAAGTGACGTGTCAAATTTGCTTCGAAGATGCCCCTGTTGAGAAGACCACTGTAATGGACTGCAACCATATATTTTGCAATGAAT : GTTGGACAACTCATTTCATTGTAAAAATAAATGAGGGTCAGAGTAAACAAGTAACTTGCATGGCCCAAAAGTGCAATGTGATCTGTGATGAAGGAAAGATTAGGGATCTCGTCACTGCAAGAGATCCTGCTTTAGCAGAGAAATTTGATCGTTTTCTGTTAGAGTCATATATTGATGATAACAAGAGGGTTAAATGGTGCCCTAGTGTTCCTCATTGTGGAAATGCAATTCGTATTGAGGATGATGATTACTGCTGTGAAGTTGAATGTGCATGTGGTGTACAGTTCTGTTTTAATTGTTTATCAGAAGCGCACTCACCTTGTTCATGTCTGATGTGGAAACTTTGGATGAAGAAGTGCAAGAACGATGGGAAGACAGTAACGTGGATAAGTGAAAATGCCAAACATTGCCCAAACTGTCACAATGCCGTGGAGAAGAATGGGGGATGCAACCTTGTAAGATGTAGATGTGGACAGCCGTTTTG : TTGGTTGTGCGGTGGAGCTACTGGCTTAGACCACACATGGAGTAGCATTCGAGGTCACACTTGTGGCATTTATAAGGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGCTATACTCATTATTATGAGCGCTATATGGTTCATCGTGATTCGTTGGAGGCTGAAGCAAACATGAAGCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAGGACTTCAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCCTGTTCCTATCCAGTTTCATTTTACGTTTTTGATCAGACGCTGTTCAAGGATGAAATGACACAAAAAGATAGGGAAATAAAGAAGAACCTTTTTGAAAACCTGCAGCAGCAACTTGAAATAAACGTTGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAAGAGTT : GTACGATTGCATTGACAACGATTTACTGCTTCCTCTACAGCAGGCGAATCATACCATAGCTCATTATAGATCCGAGGGAGTGGCGAAAGCATCAGAACTTCCTAATTGACATTCCACCAACACTAGGCATGTGAGCACTCTCAATCAGAGGCAAGAAAAGATGCACATTCCTTTTCTCATGAGCTGATCTACAATTTTATGCTAGAGGGTTTGATTACTACAGCATCTAATATTCTTTTGCTACACTTGATATGAATTTAGTCTAGATTCTTAACTACATATAGTTTGAGTTGAAGACAATGTATGAACATTGGTTTTCGTTTGGCCATATCATATCATATATTATTATAAGTGGGAAGATTCAAACTGCAAAGTTGAATTATCATTTTGTCCCTCTACAGTTAATAAATGAGTACATTGATATTGCTTTTAATCGTAATC</gDNA_template>
            <first_frame> F  H  S  D  Q  N  S  P  K  K  N  P  K  I  F  L  P  H  E  G  I  S  R  I  D  K  P  R  D  H  Q  S  V  K  L  L  T  F  L  G  F  F  D  F  S  L  W  G  V  L  V  Y  V  K  N  Y  G  G  L  *  L  W  E  Q  R  *  *  *  M  G  Q  S  T  V  Q  *  *  R  *  R  R  *  *  W  *  I  S  *  W  V  Y  G  N  *  T  R  E  K  R  N  L  W  K  G  S  F  M  Q   : G  N  Q  E  R  D  S  F  S  C  T   : E  R  R  L  A  K  S  D  G  L  A  I  S  E  G  T  S  C  S  K  L  A  Y  S  L  P  M  G  S  *  Q  G  L  C  G  S  C  *  E  R  D  R  N  V  I  C  *  S  G  C  D  T  G  R  E  R  G  T  Y  F  H  S  V  D  I  *  S  D  V  S  N  L  L  R  R  C  P  C  *  E  D  H  C  N  G  L  Q  P  Y  I  L  Q  *  M :   L  D  N  S  F  H  C  K  N  K  *  G  S  E  *  T  S  N  L  H  G  P  K  V  Q  C  D  L  *  *  R  K  D  *  G  S  R  H  C  K  R  S  C  F  S  R  E  I  *  S  F  S  V  R  V  I  Y  *  *  *  Q  E  G  *  M  V  P  *  C  S  S  L  W  K  C  N  S  Y  *  G  *  *  L  L  L  *  S  *  M  C  M  W  C  T  V  L  F  *  L  F  I  R  S  A  L  T  L  F  M  S  D  V  E  T  L  D  E  E  V  Q  E  R  W  E  D  S  N  V  D  K  *  K  C  Q  T  L  P  K  L  S  Q  C  R  G  E  E  W  G  M  Q  P  C  K  M  *  M  W  T  A  V  L  :  L  V  V  R  W  S  Y  W  L  R  P  H  M  E  *  H  S  R  S  H  L  W  H  L  *  G  R  G  R  G  *  V  D  D  C  Q  K  *  S  L  A  L  Y  S  L  L  *  A  L  Y  G  S  S  *  F  V  G  G  *  S  K  H  E  A  K  T  K  V  *  S  V  E  T  R  S  K  G  I  A  I  K  G  L  Q  L  G  R  K  W  M  *  *  T  P  *  I  E  A  N  S  L  L  F  L  S  S  F  I  L  R  F  *  S  D  A  V  Q  G  *  N  D  T  K  R  *  G  N  K  E  E  P  F  *  K  P  A  A  A  T  *  N  K  R  *  E  T  F  D  V  L  G  R  T  I  C  *  I  S  *  R  *  T  F  G  D  *  N  E  D  H  H  S  L  R  T  N  R  Q  P  L  Q  R  V  :  V  R  L  H  *  Q  R  F  T  A  S  S  T  A  G  E  S  Y  H  S  S  L  *  I  R  G  S  G  E  S  I  R  T  S  *  L  T  F  H  Q  H  *  A  C  E  H  S  Q  S  E  A  R  K  D  A  H  S  F  S  H  E  L  I  Y  N  F  M  L  E  G  L  I  T  T  A  S  N  I  L  L  L  H  L  I  *  I  *  S  R  F  L  T  T  Y  S  L  S  *  R  Q  C  M  N  I  G  F  R  L  A  I  S  Y  H  I  L  L  *  V  G  R  F  K  L  Q  S  *  I  I  I  L  S  L  Y  S  *  *  M  S  T  L  I  L  L  L  I  V  I </first_frame>
            <second_frame>  F  T  P  I  K  T  L  Q  K  K  I  Q  K  S  S  F  P  T  K  E  F  Q  E  S  T  N  L  G  I  I  K  A  *  N  C  *  L  F  W  G  F  S  I  F  L  C  G  G  F  *  C  M  *  K  I  M  E  D  Y  S  Y  G  S  S  D  D  D  E  W  D  N  Q  Q  C  N  N  D  D  E  D  D  D  D  G  E  F  L  D  G  F  T  E  I  E  Q  E  R  N  G  I  S  G  K  G  P  S  C  K  :  V  I  R  K  E  T  L  L  A  A  Q  :  K  E  D  L  Q  R  V  M  D  L  L  S  L  K  E  H  H  A  R  S  L  L  I  H  Y  R  W  E  V  D  K  V  F  A  V  L  V  E  R  G  T  E  M  L  Y  A  E  A  G  V  T  L  E  G  K  E  E  H  T  S  T  L  S  T  S  E  V  T  C  Q  I  C  F  E  D  A  P  V  E  K  T  T  V  M  D  C  N  H  I  F  C  N  E   : C  W  T  T  H  F  I  V  K  I  N  E  G  Q  S  K  Q  V  T  C  M  A  Q  K  C  N  V  I  C  D  E  G  K  I  R  D  L  V  T  A  R  D  P  A  L  A  E  K  F  D  R  F  L  L  E  S  Y  I  D  D  N  K  R  V  K  W  C  P  S  V  P  H  C  G  N  A  I  R  I  E  D  D  D  Y  C  C  E  V  E  C  A  C  G  V  Q  F  C  F  N  C  L  S  E  A  H  S  P  C  S  C  L  M  W  K  L  W  M  K  K  C  K  N  D  G  K  T  V  T  W  I  S  E  N  A  K  H  C  P  N  C  H  N  A  V  E  K  N  G  G  C  N  L  V  R  C  R  C  G  Q  P  F  C :   W  L  C  G  G  A  T  G  L  D  H  T  W  S  S  I  R  G  H  T  C  G  I  Y  K  E  G  E  E  D  K  S  T  T  V  R  N  D  L  L  R  Y  T  H  Y  Y  E  R  Y  M  V  H  R  D  S  L  E  A  E  A  N  M  K  Q  K  L  K  F  E  V  L  K  L  E  A  R  E  L  L  S  K  D  F  S  W  V  E  N  G  C  N  R  L  L  E  L  R  R  I  L  S  C  S  Y  P  V  S  F  Y  V  F  D  Q  T  L  F  K  D  E  M  T  Q  K  D  R  E  I  K  K  N  L  F  E  N  L  Q  Q  Q  L  E  I  N  V  E  R  L  S  M  F  L  E  E  P  F  A  K  Y  P  E  D  K  L  L  E  T  R  T  K  I  I  T  L  S  V  L  T  D  N  L  C  K  E  L :   Y  D  C  I  D  N  D  L  L  L  P  L  Q  Q  A  N  H  T  I  A  H  Y  R  S  E  G  V  A  K  A  S  E  L  P  N  *  H  S  T  N  T  R  H  V  S  T  L  N  Q  R  Q  E  K  M  H  I  P  F  L  M  S  *  S  T  I  L  C  *  R  V  *  L  L  Q  H  L  I  F  F  C  Y  T  *  Y  E  F  S  L  D  S  *  L  H  I  V  *  V  E  D  N  V  *  T  L  V  F  V  W  P  Y  H  I  I  Y  Y  Y  K  W  E  D  S  N  C  K  V  E  L  S  F  C  P  S  T  V  N  K  *  V  H  *  Y  C  F  *  S  *   </second_frame>
            <third_frame>   S  L  R  S  K  L  S  K  K  K  S  K  N  L  P  S  P  R  R  N  F  K  N  R  Q  T  *  G  S  S  K  R  K  I  A  N  F  F  G  V  F  R  F  F  S  V  G  G  F  S  V  C  E  K  L  W  R  I  I  A  M  G  A  A  M  M  M  N  G  T  I  N  S  A  I  M  T  M  K  T  M  M  M  V  N  F  L  M  G  L  R  K  L  N  K  R  E  T  E  S  L  E  R  V  L  H  A  R :   *  S  G  K  R  L  F  *  L  H  R :   K  K  T  C  K  E  *  W  T  C  Y  L  *  R  N  I  M  L  E  A  C  L  F  I  T  D  G  K  L  T  R  S  L  R  F  L  L  R  E  G  Q  K  C  Y  M  L  K  R  V  *  H  W  K  G  K  R  N  I  L  P  L  C  R  H  L  K  *  R  V  K  F  A  S  K  M  P  L  L  R  R  P  L  *  W  T  A  T  I  Y  F  A  M  N  :  V  G  Q  L  I  S  L  *  K  *  M  R  V  R  V  N  K  *  L  A  W  P  K  S  A  M  *  S  V  M  K  E  R  L  G  I  S  S  L  Q  E  I  L  L  *  Q  R  N  L  I  V  F  C  *  S  H  I  L  M  I  T  R  G  L  N  G  A  L  V  F  L  I  V  E  M  Q  F  V  L  R  M  M  I  T  A  V  K  L  N  V  H  V  V  Y  S  S  V  L  I  V  Y  Q  K  R  T  H  L  V  H  V  *  C  G  N  F  G  *  R  S  A  R  T  M  G  R  Q  *  R  G  *  V  K  M  P  N  I  A  Q  T  V  T  M  P  W  R  R  M  G  D  A  T  L  *  D  V  D  V  D  S  R  F   : V  G  C  A  V  E  L  L  A  *  T  T  H  G  V  A  F  E  V  T  L  V  A  F  I  R  K  G  K  R  I  S  R  R  L  S  E  M  I  S  C  A  I  L  I  I  M  S  A  I  W  F  I  V  I  R  W  R  L  K  Q  T  *  S  K  N  *  S  L  K  C  *  N  S  K  Q  G  N  C  Y  Q  R  T  S  A  G  *  K  M  D  V  I  D  S  L  N  *  G  E  F  S  P  V  P  I  Q  F  H  F  T  F  L  I  R  R  C  S  R  M  K  *  H  K  K  I  G  K  *  R  R  T  F  L  K  T  C  S  S  N  L  K  *  T  L  R  D  F  R  C  S  W  K  N  H  L  L  N  I  L  K  I  N  F  W  R  L  E  R  R  S  S  L  S  P  Y  *  Q  T  T  S  A  K  S   : C  T  I  A  L  T  T  I  Y  C  F  L  Y  S  R  R  I  I  P  *  L  I  I  D  P  R  E  W  R  K  H  Q  N  F  L  I  D  I  P  P  T  L  G  M  *  A  L  S  I  R  G  K  K  R  C  T  F  L  F  S  *  A  D  L  Q  F  Y  A  R  G  F  D  Y  Y  S  I  *  Y  S  F  A  T  L  D  M  N  L  V  *  I  L  N  Y  I  *  F  E  L  K  T  M  Y  E  H  W  F  S  F  G  H  I  I  S  Y  I  I  I  S  G  K  I  Q  T  A  K  L  N  Y  H  F  V  P  L  Q  L  I  N  E  Y  I  D  I  A  F  N  R  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0012E19.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82925" stop="82761"/>
                    <exon start="81784" stop="81752"/>
                    <exon start="81668" stop="81389"/>
                    <exon start="80946" stop="80463"/>
                    <exon start="79692" stop="79144"/>
                    <exon start="78841" stop="78733"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1617</number_coding_nucleotides>
                  <number_encoded_amino_acids>539</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIMEDYSYGSSDDDEWDNQQCNNDDEDDDDGEFLDGFTEIEQERNGISGKGPSCKVIRKETLLAAQKEDLQRVMDLLSLKEHHARSLLIHYRWEVDKVFAVLVERGTEMLYAEAGVTLEGKEEHTSTLSTSEVTCQICFEDAPVEKTTVMDCNHIFCNECWTTHFIVKINEGQSKQVTCMAQKCNVICDEGKIRDLVTARDPALAEKFDRFLLESYIDDNKRVKWCPSVPHCGNAIRIEDDDYCCEVECACGVQFCFNCLSEAHSPCSCLMWKLWMKKCKNDGKTVTWISENAKHCPNCHNAVEKNGGCNLVRCRCGQPFCWLCGGATGLDHTWSSIRGHTCGIYKEGEEDKSTTVRNDLLRYTHYYERYMVHRDSLEAEANMKQKLKFEVLKLEARELLSKDFSWVENGCNRLLELRRILSCSYPVSFYVFDQTLFKDEMTQKDREIKKNLFENLQQQLEINVERLSMFLEEPFAKYPEDKLLETRTKIITLSVLTDNLCKELYDCIDNDLLLPLQQANHTIAHYRSEGVAKASELPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="88399" PGL_stop="88875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88399" e_stop="88680"/>
            <exon e_start="88827" e_stop="88875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.852" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="88399" e_stop="88680" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.852">
            <gDNA_intron_boundary i_start="88681" i_stop="88826" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88827" e_stop="88875" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88399" stop="88680"/>
              <exon start="88827" stop="88875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332544" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTATTTTTGCCGTTTTCTTTTGATTATCCTGATTGCATTATGTCAATGTTTAAGCTTTGTATCACACATGTATTAATGTACTTTTAATACATTTTTGAACAATGTATTGGAAGGGGAGCAAATGTTGATGTACACACTGAATGAGGCATCGAGGAACGTCATGGCATCGATGATAAAGTTGATGCTCTGAAGAGCATAATCAAGATCAGCGTCAGTAGTTCAATAGGTATCACATGGTGGTCGAGGGCTCATCAACAGTCAATAGAACTTAATATACAG : TAAACATGATACTGTCTCTTCCATGCTTGGACGATTTGTTGGTTCTCGA</gDNA_template>
            <first_frame> F  L  F  L  P  F  S  F  D  Y  P  D  C  I  M  S  M  F  K  L  C  I  T  H  V  L  M  Y  F  *  Y  I  F  E  Q  C  I  G  R  G  A  N  V  D  V  H  T  E  *  G  I  E  E  R  H  G  I  D  D  K  V  D  A  L  K  S  I  I  K  I  S  V  S  S  S  I  G  I  T  W  W  S  R  A  H  Q  Q  S  I  E  L  N  I  Q  :  *  T  *  Y  C  L  F  H  A  W  T  I  C  W  F  S  </first_frame>
            <second_frame>  F  Y  F  C  R  F  L  L  I  I  L  I  A  L  C  Q  C  L  S  F  V  S  H  M  Y  *  C  T  F  N  T  F  L  N  N  V  L  E  G  E  Q  M  L  M  Y  T  L  N  E  A  S  R  N  V  M  A  S  M  I  K  L  M  L  *  R  A  *  S  R  S  A  S  V  V  Q  *  V  S  H  G  G  R  G  L  I  N  S  Q  *  N  L  I  Y  S :   K  H  D  T  V  S  S  M  L  G  R  F  V  G  S  R </second_frame>
            <third_frame>   S  I  F  A  V  F  F  *  L  S  *  L  H  Y  V  N  V  *  A  L  Y  H  T  C  I  N  V  L  L  I  H  F  *  T  M  Y  W  K  G  S  K  C  *  C  T  H  *  M  R  H  R  G  T  S  W  H  R  *  *  S  *  C  S  E  E  H  N  Q  D  Q  R  Q  *  F  N  R  Y  H  M  V  V  E  G  S  S  T  V  N  R  T  *  Y  T   : V  N  M  I  L  S  L  P  C  L  D  D  L  L  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0012E19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="89366" PGL_stop="90054"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89366" e_stop="90054"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89366" e_stop="90054" e_length="689"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89366" stop="90054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328681" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGAGACTTGGTTCTGATCAGCCATTCCCTGAGAGAGCCATTTTGCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGTAGTATGTTCACTTCTCTAGATACATCCATGATCGCCATTTTGACTGCTAAGGTTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTTGCGTAGCATGCTTCAATTCTTTAAACTTAAAAACCTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCCTCGGAAATTTGCTATCTCTTTTCTTAAACAAAGCAAGAAGGATGACCCAAGAAACCACAAAGCCTGTTGCAACTCCACTACCTATGTAAAGATTTCTCTTTGATTTTCCCTTTGAAGCATTAGCTGCAGATGGAGGTGAAAACGACCTAATAGGTTTTCTATAATTCTCATTTCCGGTATCTAAATTTGATGGTTCAGAAGGCAGGGGAATTAGAATGGTTGTAAAAGGATACAAAACAGAATTTTCATCCAAGAATCCATTTGCTTCGATTATGTTCCTTCCATTAACTTTAAATCTTTTGCCGACTGTAAGGATGTCATCGCCAACGTTTATTGAATAAGTCATC</gDNA_template>
            <first_frame> L  E  T  W  F  *  S  A  I  P  *  E  S  H  F  A  C  I  Q  R  Q  E  R  S  N  L  Y  V  H  N  S  H  K  A  L  L  D  *  S  D  *  S  Y  V  V  C  S  L  L  *  I  H  P  *  S  P  F  *  L  L  R  F  P  L  *  T  L  P  S  I  Q  I  P  L  S  G  S  W  S  Q  S  F  A  *  H  A  S  I  L  *  T  *  K  P  *  G  H  D  L  C  S  R  S  P  R  G  Y  L  H  D  L  K  T  S  S  E  I  C  Y  L  F  S  *  T  K  Q  E  G  *  P  K  K  P  Q  S  L  L  Q  L  H  Y  L  C  K  D  F  S  L  I  F  P  L  K  H  *  L  Q  M  E  V  K  T  T  *  *  V  F  Y  N  S  H  F  R  Y  L  N  L  M  V  Q  K  A  G  E  L  E  W  L  *  K  D  T  K  Q  N  F  H  P  R  I  H  L  L  R  L  C  S  F  H  *  L  *  I  F  C  R  L  *  G  C  H  R  Q  R  L  L  N  K  S   </first_frame>
            <second_frame>  L  R  L  G  S  D  Q  P  F  P  E  R  A  I  L  H  V  F  K  D  K  K  E  A  T  F  M  F  T  I  A  T  K  L  Y  *  I  E  V  I  D  L  M  *  Y  V  H  F  S  R  Y  I  H  D  R  H  F  D  C  *  G  F  P  F  K  P  S  P  V  Y  R  S  L  Y  P  V  L  G  V  K  V  L  R  S  M  L  Q  F  F  K  L  K  N  L  R  D  M  I  Y  V  R  D  L  H  E  D  I  F  M  T  *  R  P  P  R  K  F  A  I  S  F  L  K  Q  S  K  K  D  D  P  R  N  H  K  A  C  C  N  S  T  T  Y  V  K  I  S  L  *  F  S  L  *  S  I  S  C  R  W  R  *  K  R  P  N  R  F  S  I  I  L  I  S  G  I  *  I  *  W  F  R  R  Q  G  N  *  N  G  C  K  R  I  Q  N  R  I  F  I  Q  E  S  I  C  F  D  Y  V  P  S  I  N  F  K  S  F  A  D  C  K  D  V  I  A  N  V  Y  *  I  S  H  </second_frame>
            <third_frame>   *  D  L  V  L  I  S  H  S  L  R  E  P  F  C  M  Y  S  K  T  R  K  K  Q  P  L  C  S  Q  *  P  Q  S  F  I  R  L  K  *  L  I  L  C  S  M  F  T  S  L  D  T  S  M  I  A  I  L  T  A  K  V  S  P  L  N  P  P  Q  Y  T  D  P  F  I  R  F  L  E  S  K  F  C  V  A  C  F  N  S  L  N  L  K  T  L  G  T  *  S  M  F  A  I  S  T  R  I  S  S  *  L  E  D  L  L  G  N  L  L  S  L  F  L  N  K  A  R  R  M  T  Q  E  T  T  K  P  V  A  T  P  L  P  M  *  R  F  L  F  D  F  P  F  E  A  L  A  A  D  G  G  E  N  D  L  I  G  F  L  *  F  S  F  P  V  S  K  F  D  G  S  E  G  R  G  I  R  M  V  V  K  G  Y  K  T  E  F  S  S  K  N  P  F  A  S  I  M  F  L  P  L  T  L  N  L  L  P  T  V  R  M  S  S  P  T  F  I  E  *  V  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0012E19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="94137" PGL_stop="99073"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94137" e_stop="94157"/>
            <exon e_start="94272" e_stop="94314"/>
            <exon e_start="96752" e_stop="96866"/>
            <exon e_start="97989" e_stop="98097"/>
            <exon e_start="98270" e_stop="98348"/>
            <exon e_start="98459" e_stop="98575"/>
            <exon e_start="98655" e_stop="99073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94137" e_stop="94157" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94158" i_stop="94271" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94272" e_stop="94314" e_length="43"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94315" i_stop="96751" i_length="2437"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96752" e_stop="96866" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.914">
            <gDNA_intron_boundary i_start="96867" i_stop="97988" i_length="1122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97989" e_stop="98097" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.905">
            <gDNA_intron_boundary i_start="98098" i_stop="98269" i_length="172"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98270" e_stop="98348" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="98349" i_stop="98458" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98459" e_stop="98575" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="98576" i_stop="98654" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98655" e_stop="99073" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94137" stop="94157"/>
              <exon start="94272" stop="94314"/>
              <exon start="96752" stop="96866"/>
              <exon start="97989" stop="98097"/>
              <exon start="98270" stop="98348"/>
              <exon start="98459" stop="98575"/>
              <exon start="98655" stop="99073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGGATACCTTTCTATTAAA : ATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTG : GGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAG : ATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGT : GGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAG : GTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACG : GAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAGCTTGTTCGAGTCCAATGTCAGAAGGGCAATGTCTGGAGGATATGTAGGAGAAACGTTCTTCCAACGCTGCATATAAACGTCTCAGATGCAGAATCGATTAGTTGATGATGCTTACACCAGAAGTTGAAGGCTCTGAAAGTCTGTGAAGTTGGGACCAGGAAGAACCATTTTTACATGTGAAAAAGATTTGAGTGCAAAAATGTTATTAGATATTTGCAAAACTTAAAACCTGCAGAACGTTTTCTGTATGTAAGTGTTAAAACTGAAGCTGTTAAGAGACCCTTTGCCTGGATGAATTTATGTACAATCTGAACTTATGTTTTCGCGATCTTGCGCTTCAATTATCGTATTATTTAT</gDNA_template>
            <first_frame> R  G  Y  L  S  I  K  :  I  L  I  S  A  A  A  G  G  G  S  H  N  F   : G  N  H  D  *  V  V  *  S  E  G  E  T  E  R  A  C  *  K  C  K  W  K  A  T  N  *  E  T  K  C  R  R  A  A  S  S  *  R :   Y  Q  *  T  K  S  T  *  N  V  *  H  I  I  P  *  R  K  R  *  P  H  E  L  *  S  H  H  S  A  *  *  R  I  L  C  :  G  W  N  F  C  L  L  F  Q  H  F  F  Y  L  S  S  *  G  S  K  G  Q  V  Q  D  K   : G  L  P  P  E  Y  *  L  G  R  *  C  V  S  Q  H  S  S  R  R  L  E  T  C  A  Q  H  Q  H  N  N  L  W  L  V  S  F  V  H   : G  T  Q  S  R  G  S  P  Q  S  *  S  S  C  C  V  E  *  Q  P  Q  L  V  R  V  Q  C  Q  K  G  N  V  W  R  I  C  R  R  N  V  L  P  T  L  H  I  N  V  S  D  A  E  S  I  S  *  *  C  L  H  Q  K  L  K  A  L  K  V  C  E  V  G  T  R  K  N  H  F  Y  M  *  K  R  F  E  C  K  N  V  I  R  Y  L  Q  N  L  K  P  A  E  R  F  L  Y  V  S  V  K  T  E  A  V  K  R  P  F  A  W  M  N  L  C  T  I  *  T  Y  V  F  A  I  L  R  F  N  Y  R  I  I  Y </first_frame>
            <second_frame>  E  D  T  F  L  L  K :   F  S  F  Q  Q  Q  Q  E  E  V  H  I  I  L  :  G  T  M  I  K  L  F  K  V  K  E  K  Q  R  E  L  A  E  N  A  N  G  K  P  P  I  K  K  Q  S  A  G  E  L  R  L  H  K   : D  I  S  E  L  N  L  P  E  T  C  S  I  S  F  P  N  G  K  D  D  L  M  N  F  E  V  T  I  R  P  D  E  G  Y  Y  V :   G  G  T  F  V  F  S  F  S  I  S  S  I  Y  P  H  E  A  P  K  V  K  C  K  T  K  :  V  Y  H  P  N  I  D  L  E  G  N  V  C  L  N  I  L  R  E  D  W  K  P  V  L  N  I  N  T  I  I  Y  G  L  Y  H  L  F  T  :  E  P  N  H  E  D  P  L  N  H  E  A  A  A  V  L  S  D  N  P  S  L  F  E  S  N  V  R  R  A  M  S  G  G  Y  V  G  E  T  F  F  Q  R  C  I  *  T  S  Q  M  Q  N  R  L  V  D  D  A  Y  T  R  S  *  R  L  *  K  S  V  K  L  G  P  G  R  T  I  F  T  C  E  K  D  L  S  A  K  M  L  L  D  I  C  K  T  *  N  L  Q  N  V  F  C  M  *  V  L  K  L  K  L  L  R  D  P  L  P  G  *  I  Y  V  Q  S  E  L  M  F  S  R  S  C  A  S  I  I  V  L  F   </second_frame>
            <third_frame>   R  I  P  F  Y  *   : N  S  H  F  S  S  S  R  R  R  F  T  *  F  W :   E  P  *  L  S  C  L  K  *  R  R  N  R  E  S  L  L  K  M  Q  M  E  S  H  Q  L  R  N  K  V  Q  E  S  C  V  F  I  K  :  I  S  V  N  *  I  Y  L  K  R  V  A  Y  H  S  L  T  E  K  M  T  S  *  T  L  K  S  P  F  G  L  M  K  D  I  M   : W  V  E  L  L  S  S  L  S  A  F  L  L  F  I  L  M  R  L  Q  R  S  S  A  R  Q  R :   F  T  T  R  I  L  T  W  K  V  M  C  V  S  T  F  F  E  K  T  G  N  L  C  S  T  S  T  Q  *  S  M  A  C  I  I  C  S  R :   N  P  I  T  R  I  P  S  I  M  K  Q  L  L  C  *  V  T  T  P  A  C  S  S  P  M  S  E  G  Q  C  L  E  D  M  *  E  K  R  S  S  N  A  A  Y  K  R  L  R  C  R  I  D  *  L  M  M  L  T  P  E  V  E  G  S  E  S  L  *  S  W  D  Q  E  E  P  F  L  H  V  K  K  I  *  V  Q  K  C  Y  *  I  F  A  K  L  K  T  C  R  T  F  S  V  C  K  C  *  N  *  S  C  *  E  T  L  C  L  D  E  F  M  Y  N  L  N  L  C  F  R  D  L  A  L  Q  L  S  Y  Y  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0012E19.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94138" stop="94157"/>
                    <exon start="94272" stop="94314"/>
                    <exon start="96752" stop="96866"/>
                    <exon start="97989" stop="98097"/>
                    <exon start="98270" stop="98348"/>
                    <exon start="98459" stop="98575"/>
                    <exon start="98655" stop="98792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDTFLLKFSFQQQQEEVHIILGTMIKLFKVKEKQRELAENANGKPPIKKQSAGELRLHKDISELNLPETCSISFPNGKDDLMNFEVTIRPDEGYYVGGTFVFSFSISSIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHEAAAVLSDNPSLFESNVRRAMSGGYVGETFFQRCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="100857" PGL_stop="103497"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100857" e_stop="101200"/>
            <exon e_start="102365" e_stop="103497"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100857" e_stop="101200" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="101201" i_stop="102364" i_length="1164"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="102365" e_stop="103497" e_length="1133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100857" stop="101200"/>
              <exon start="102365" stop="103497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326500" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCGAGAAACAACAACAACAAAATCATGATGTGGGAAGCTGGAGAATCACCAGCATCTTCTTCGGCCGGTGCCGGAGCTGGTGGAAGTGGAGGTGCCGGAGTTGGTTTACCGGAAAGTGGTGGTGGTGGTGGTGGTGGGAGAAGGAAACCATCATGGAGAGAAAGAGAGAATAACAGGAGAAGAGAGAGGAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCGAAGCACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAG : GGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCATCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCTCGTGCTGATGCCAACATGTTATCACATCCATATTCTTTTCTCCAAAATGTCGTTCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTAAGCAAACTTTCAATTTAGAAACTTTGGCCAAAGAATCAATGTTTGCTTTAAACATCCCTTTCTTTGCTGCTTCAGCCCCAGCAAGCCCAACTAGGGTTCAGCGTTTTACTCCTCCAACTATACCCGAGTGTGATGAATCTGACTCATCTACCATTGATTCAGGCCAGTGGATCAACTTTCAAAAGTATGCGTCAAATGTTCCACCTTCTCCAACATTTAATCTTGTAAAACCTGTGCCTCAGCCGCTTCGTCCTAATGATATGATCACAGACAAGGGTAAGAGCATAGACTTCGACTTTGAAAATGTATCAGTCAAGGCATGGGAAGGTGAAAGGATTCACGATGTAGGATTCGATGATCTGGAACTCACACTTGGAAGTGGCAATGCTCGCATATGATTGAGATTCTCTGATTTAGTTAGCTGATGAAGCACTTTGCATTCCAGTGGATTATTCCAGCCTCGTCTGGTGAGATATTGCCCAAACGTAGAGCTTGCATGAATCTCTGTTGCTACTTACCTTATGTATAACATTCCTTCCCCCCTTATTTGAAAAGCCCCCTTCAAAATTTATACAGGTCTTATCACAAGCATTTCGTGTAGATATATGCTTGCTTCTATGGTCGAGAATCAATTTCTTCATTGTAGACTAGATGAAGCTTCTTCACAACTATGAACTATCCATATTTGTCTATTAGAACTCGTTTTCTTTTCTTTCTGTTGGAACTAGCTACAGTTGAAGTCGATGATGTACCTTGTAGTCTCTCTGATGTTTTTCGTGCACATCATGAAGACATGAAACGCGTTACAGTTTATACATTGGAGATTTTGTGTTGTGTTTGGTTGAAG</gDNA_template>
            <first_frame> K  R  E  T  T  T  T  K  S  *  C  G  K  L  E  N  H  Q  H  L  L  R  P  V  P  E  L  V  E  V  E  V  P  E  L  V  Y  R  K  V  V  V  V  V  V  V  G  E  G  N  H  H  G  E  K  E  R  I  T  G  E  E  R  G  G  G  E  L  *  L  L  R  F  I  L  V  *  E  L  K  E  T  I  I  F  R  S  T  V  I  T  M  K  F  L  K  L  F  V  L  K  L  V  G  S  L  N  L  M  V  P  L  I  A  R :   D  A  S  Q  P  R  W  R  L  E  A  L  Q  Q  T  S  R  Q  V  L  H  G  I  Q  V  P  H  H  H  T  L  L  A  Q  F  H  L  I  S  Q  V  Q  L  P  L  L  S  P  V  H  L  V  L  M  P  T  C  Y  H  I  H  I  L  F  S  K  M  S  F  L  H  P  F  L  H  Y  E  Y  Q  T  V  P  L  *  L  H  L  F  H  H  Q  L  G  I  L  S  K  L  S  I  *  K  L  W  P  K  N  Q  C  L  L  *  T  S  L  S  L  L  L  Q  P  Q  Q  A  Q  L  G  F  S  V  L  L  L  Q  L  Y  P  S  V  M  N  L  T  H  L  P  L  I  Q  A  S  G  S  T  F  K  S  M  R  Q  M  F  H  L  L  Q  H  L  I  L  *  N  L  C  L  S  R  F  V  L  M  I  *  S  Q  T  R  V  R  A  *  T  S  T  L  K  M  Y  Q  S  R  H  G  K  V  K  G  F  T  M  *  D  S  M  I  W  N  S  H  L  E  V  A  M  L  A  Y  D  *  D  S  L  I  *  L  A  D  E  A  L  C  I  P  V  D  Y  S  S  L  V  W  *  D  I  A  Q  T  *  S  L  H  E  S  L  L  L  L  T  L  C  I  T  F  L  P  P  L  F  E  K  P  P  S  K  F  I  Q  V  L  S  Q  A  F  R  V  D  I  C  L  L  L  W  S  R  I  N  F  F  I  V  D  *  M  K  L  L  H  N  Y  E  L  S  I  F  V  Y  *  N  S  F  S  F  L  S  V  G  T  S  Y  S  *  S  R  *  C  T  L  *  S  L  *  C  F  S  C  T  S  *  R  H  E  T  R  Y  S  L  Y  I  G  D  F  V  L  C  L  V  E  </first_frame>
            <second_frame>  S  E  K  Q  Q  Q  Q  N  H  D  V  G  S  W  R  I  T  S  I  F  F  G  R  C  R  S  W  W  K  W  R  C  R  S  W  F  T  G  K  W  W  W  W  W  W  W  E  K  E  T  I  M  E  R  K  R  E  *  Q  E  K  R  E  E  E  E  S  C  S  C  *  D  L  Y  W  F  K  S  S  R  K  L  *  S  S  E  A  L  *  *  Q  *  S  S  *  S  S  L  Y  *  S  W  L  D  R  *  T  *  W  Y  H  L  S  Q   : G  M  Q  A  N  P  D  G  D  W  R  H  F  N  K  H  H  A  K  F  F  T  A  S  K  S  P  I  I  I  L  C  *  P  N  S  I  L  S  A  K  S  N  F  L  F  F  P  Q  S  I  S  C  *  C  Q  H  V  I  T  S  I  F  F  S  P  K  C  R  S  F  I  P  S  S  I  T  N  I  K  Q  C  P  C  N  S  T  S  F  I  T  N  *  A  S  *  A  N  F  Q  F  R  N  F  G  Q  R  I  N  V  C  F  K  H  P  F  L  C  C  F  S  P  S  K  P  N  *  G  S  A  F  Y  S  S  N  Y  T  R  V  *  *  I  *  L  I  Y  H  *  F  R  P  V  D  Q  L  S  K  V  C  V  K  C  S  T  F  S  N  I  *  S  C  K  T  C  A  S  A  A  S  S  *  *  Y  D  H  R  Q  G  *  E  H  R  L  R  L  *  K  C  I  S  Q  G  M  G  R  *  K  D  S  R  C  R  I  R  *  S  G  T  H  T  W  K  W  Q  C  S  H  M  I  E  I  L  *  F  S  *  L  M  K  H  F  A  F  Q  W  I  I  P  A  S  S  G  E  I  L  P  K  R  R  A  C  M  N  L  C  C  Y  L  P  Y  V  *  H  S  F  P  P  Y  L  K  S  P  L  Q  N  L  Y  R  S  Y  H  K  H  F  V  *  I  Y  A  C  F  Y  G  R  E  S  I  S  S  L  *  T  R  *  S  F  F  T  T  M  N  Y  P  Y  L  S  I  R  T  R  F  L  F  F  L  L  E  L  A  T  V  E  V  D  D  V  P  C  S  L  S  D  V  F  R  A  H  H  E  D  M  K  R  V  T  V  Y  T  L  E  I  L  C  C  V  W  L  K </second_frame>
            <third_frame>   A  R  N  N  N  N  K  I  M  M  W  E  A  G  E  S  P  A  S  S  S  A  G  A  G  A  G  G  S  G  G  A  G  V  G  L  P  E  S  G  G  G  G  G  G  G  R  R  K  P  S  W  R  E  R  E  N  N  R  R  R  E  R  R  R  R  A  V  A  A  K  I  Y  T  G  L  R  A  Q  G  N  Y  N  L  P  K  H  C  D  N  N  E  V  L  K  A  L  C  T  E  A  G  W  I  V  E  P  D  G  T  T  Y  R  K  :  G  C  K  P  T  P  M  E  I  G  G  T  S  T  N  I  T  P  S  S  S  R  H  P  S  P  P  S  S  Y  F  A  S  P  I  P  S  Y  Q  P  S  P  T  S  S  S  F  P  S  P  S  R  A  D  A  N  M  L  S  H  P  Y  S  F  L  Q  N  V  V  P  S  S  L  P  P  L  R  I  S  N  S  A  P  V  T  P  P  L  S  S  P  T  R  H  P  K  Q  T  F  N  L  E  T  L  A  K  E  S  M  F  A  L  N  I  P  F  F  A  A  S  A  P  A  S  P  T  R  V  Q  R  F  T  P  P  T  I  P  E  C  D  E  S  D  S  S  T  I  D  S  G  Q  W  I  N  F  Q  K  Y  A  S  N  V  P  P  S  P  T  F  N  L  V  K  P  V  P  Q  P  L  R  P  N  D  M  I  T  D  K  G  K  S  I  D  F  D  F  E  N  V  S  V  K  A  W  E  G  E  R  I  H  D  V  G  F  D  D  L  E  L  T  L  G  S  G  N  A  R  I  *  L  R  F  S  D  L  V  S  *  *  S  T  L  H  S  S  G  L  F  Q  P  R  L  V  R  Y  C  P  N  V  E  L  A  *  I  S  V  A  T  Y  L  M  Y  N  I  P  S  P  L  I  *  K  A  P  F  K  I  Y  T  G  L  I  T  S  I  S  C  R  Y  M  L  A  S  M  V  E  N  Q  F  L  H  C  R  L  D  E  A  S  S  Q  L  *  T  I  H  I  C  L  L  E  L  V  F  F  S  F  C  W  N  *  L  Q  L  K  S  M  M  Y  L  V  V  S  L  M  F  F  V  H  I  M  K  T  *  N  A  L  Q  F  I  H  W  R  F  C  V  V  F  G  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0012E19.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100859" stop="101200"/>
                    <exon start="102365" stop="103048"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARNNNNKIMMWEAGESPASSSAGAGAGGSGGAGVGLPESGGGGGGGRRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPKHCDNNEVLKALCTEAGWIVEPDGTTYRKGCKPTPMEIGGTSTNITPSSSRHPSPPSSYFASPIPSYQPSPTSSSFPSPSRADANMLSHPYSFLQNVVPSSLPPLRISNSAPVTPPLSSPTRHPKQTFNLETLAKESMFALNIPFFAASAPASPTRVQRFTPPTIPECDESDSSTIDSGQWINFQKYASNVPPSPTFNLVKPVPQPLRPNDMITDKGKSIDFDFENVSVKAWEGERIHDVGFDDLELTLGSGNARI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0012E19.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103306" stop="103497"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFTTMNYPYLSIRTRFLFFLLELATVEVDDVPCSLSDVFRAHHEDMKRVTVYTLEILCCVWLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="111734" PGL_stop="107194"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111734" e_stop="111649"/>
            <exon e_start="109029" e_stop="108764"/>
            <exon e_start="108000" e_stop="107713"/>
            <exon e_start="107262" e_stop="107194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.785" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.733" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111734" e_stop="111649" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.785" acc_prob="0.973">
            <gDNA_intron_boundary i_start="111648" i_stop="109030" i_length="2619"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109029" e_stop="108764" e_length="266"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.733">
            <gDNA_intron_boundary i_start="108763" i_stop="108001" i_length="763"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108000" e_stop="107713" e_length="288"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="107712" i_stop="107263" i_length="450"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="107262" e_stop="107194" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111734" stop="111649"/>
              <exon start="109029" stop="108764"/>
              <exon start="108000" stop="107713"/>
              <exon start="107262" stop="107194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344511" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACAGAAGAATTGTTTGTGTATACATGCTCAAAGAAAGCTAAAAAGCTGCTGTCTTTGCAATCCTTTTTTACTAATGTCTATAT : AGATCAAGAGGCCGGTGGGCCTTGAGTGAACCTTAATTTCAGTAGTGAAAGGAAAATGACCACAAAACCAAAGAAAGGATGGAAATCAATTTCGTCTCTCAATTTGAAGACCAAATCAGCAGCACATTTTTGTTTGCTCCCCAAATCAAAGTCGGATCGATATGGTCCTGGCGACACACCTGTTTATCTCAACGTGTATGACTTGACTCCTATGAACGGCTATGTATATTGGGTTGGCCTTGGTATTTTTCATTCTGGTGTGGAAG : TTCATGGTGTAGAATATGCATTTGGAGCTCATGACTATTCAAGCAGTGGTGTCTTTGAAGTTGAACCACGACAATGCCCGGGGTTCAAGTTTAGGAAGTCCATATTCATTGGGGTTACAAAGTTGGATCCCTGTCAGGTTAGAGAGTTTATCGAACGTCAAGCTGCTAGCTATAATGGTGACACATATCATTTGATTTCGAAGAACTGCAACCATTTTTGCAACGATACATGCTACAAGCTCACCGGGAAAAAGATTCCAAAGTGGGTAAACCGACTTGCAAAATTAG : GTTCATCATTCAACTGCATGCTACCCGAGGCTCTAAAAGTTGCCGCGGTGGAACATGACCCTAATGGAC</gDNA_template>
            <first_frame> F  T  E  E  L  F  V  Y  T  C  S  K  K  A  K  K  L  L  S  L  Q  S  F  F  T  N  V  Y  I :   D  Q  E  A  G  G  P  *  V  N  L  N  F  S  S  E  R  K  M  T  T  K  P  K  K  G  W  K  S  I  S  S  L  N  L  K  T  K  S  A  A  H  F  C  L  L  P  K  S  K  S  D  R  Y  G  P  G  D  T  P  V  Y  L  N  V  Y  D  L  T  P  M  N  G  Y  V  Y  W  V  G  L  G  I  F  H  S  G  V  E   : V  H  G  V  E  Y  A  F  G  A  H  D  Y  S  S  S  G  V  F  E  V  E  P  R  Q  C  P  G  F  K  F  R  K  S  I  F  I  G  V  T  K  L  D  P  C  Q  V  R  E  F  I  E  R  Q  A  A  S  Y  N  G  D  T  Y  H  L  I  S  K  N  C  N  H  F  C  N  D  T  C  Y  K  L  T  G  K  K  I  P  K  W  V  N  R  L  A  K  L   : G  S  S  F  N  C  M  L  P  E  A  L  K  V  A  A  V  E  H  D  P  N  G  </first_frame>
            <second_frame>  S  Q  K  N  C  L  C  I  H  A  Q  R  K  L  K  S  C  C  L  C  N  P  F  L  L  M  S  I   : *  I  K  R  P  V  G  L  E  *  T  L  I  S  V  V  K  G  K  *  P  Q  N  Q  R  K  D  G  N  Q  F  R  L  S  I  *  R  P  N  Q  Q  H  I  F  V  C  S  P  N  Q  S  R  I  D  M  V  L  A  T  H  L  F  I  S  T  C  M  T  *  L  L  *  T  A  M  Y  I  G  L  A  L  V  F  F  I  L  V  W  K  :  F  M  V  *  N  M  H  L  E  L  M  T  I  Q  A  V  V  S  L  K  L  N  H  D  N  A  R  G  S  S  L  G  S  P  Y  S  L  G  L  Q  S  W  I  P  V  R  L  E  S  L  S  N  V  K  L  L  A  I  M  V  T  H  I  I  *  F  R  R  T  A  T  I  F  A  T  I  H  A  T  S  S  P  G  K  R  F  Q  S  G  *  T  D  L  Q  N  *  :  V  H  H  S  T  A  C  Y  P  R  L  *  K  L  P  R  W  N  M  T  L  M  D </second_frame>
            <third_frame>   H  R  R  I  V  C  V  Y  M  L  K  E  S  *  K  A  A  V  F  A  I  L  F  Y  *  C  L  Y  :  R  S  R  G  R  W  A  L  S  E  P  *  F  Q  *  *  K  E  N  D  H  K  T  K  E  R  M  E  I  N  F  V  S  Q  F  E  D  Q  I  S  S  T  F  L  F  A  P  Q  I  K  V  G  S  I  W  S  W  R  H  T  C  L  S  Q  R  V  *  L  D  S  Y  E  R  L  C  I  L  G  W  P  W  Y  F  S  F  W  C  G  S :   S  W  C  R  I  C  I  W  S  S  *  L  F  K  Q  W  C  L  *  S  *  T  T  T  M  P  G  V  Q  V  *  E  V  H  I  H  W  G  Y  K  V  G  S  L  S  G  *  R  V  Y  R  T  S  S  C  *  L  *  W  *  H  I  S  F  D  F  E  E  L  Q  P  F  L  Q  R  Y  M  L  Q  A  H  R  E  K  D  S  K  V  G  K  P  T  C  K  I  R :   F  I  I  Q  L  H  A  T  R  G  S  K  S  C  R  G  G  T  *  P  *  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0012E19.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109004" stop="108764"/>
                    <exon start="108000" stop="107713"/>
                    <exon start="107262" stop="107195"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNLNFSSERKMTTKPKKGWKSISSLNLKTKSAAHFCLLPKSKSDRYGPGDTPVYLNVYDLTPMNGYVYWVGLGIFHSGVEVHGVEYAFGAHDYSSSGVFEVEPRQCPGFKFRKSIFIGVTKLDPCQVREFIERQAASYNGDTYHLISKNCNHFCNDTCYKLTGKKIPKWVNRLAKLGSSFNCMLPEALKVAAVEHDPNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 22 chains have been computed
$ 
$ memory statistics:
$ 96232 bytes spliced alignments in total
$ 13 spliced alignments have been stored
$ 7402 bytes was the average size of a spliced alignment
$ 20920 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1609 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 23 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-25 20:11:07
-->
