<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-21 08:16:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318164" ref_strand="+" ref_description="SGN-U318164        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | FAD-binding domain-containing protein / cytokinin oxidase family protein, similar to cytokinin oxidase from Zea mays (gi:3882018) (gi:3341978) | chr5:23062170-23065494 REVERSE | Aliases: MHM17.8, MHM17_8(evalue: 1e-107, score=386) genbank/nr: gi|15241997|ref|NP_200507.1| cytokinin oxidase family [Arabidopsis thaliana] gi|20138027|sp|Q9LTS3|CKX3_ARATH Cytokinin oxidase 3 precursor (CKO 3) gi|8777437|dbj|BAA97027.1| cytokinin oxidase [Arabidopsis thaliana] gi|11120510|gb|AAG30906.1| cytokinin oxidase [Arabidopsis thaliana](evalue: 1e-105, score=386)">
      <seq>tagtggtcaaactaaccgatatggtccggaaataagtaacgttcatgagatggatgttattacaggtaaaggggaattaatgacttgctccaaagatatgaattcagaattgttttttggagttttaggaggtttggtacagtttggaataataacaagagcaagaattgtcttggataaagcaccaacaagagtgaaatgggtgagaatgttatatgatgatttctcaaaattcacaaaagatcaagaacatcttatttcaattcataataatggattggattatgttgaaggctctctaatgatggagcaaagctctctaaataattggagatcttcattttattcaccttccaatcaaaccaaaattgcttcattattatccaaaaataaaatcatgtattgcttggaaatagtgaagtactatgatgaccaaaatgctaatactattgataaggagttgaagaagttggtaaaaggattgaagtatgtaggtggatttatgttcaagaaagatgtgagttttgtggaatttttgaatagagttagaagtggggaattagagttacaatcaaaaggaatgtgggatgttccacatccatggcccaatttgtttgtaccaaagtcttctatcctgcattttaatgctgctgtttttgtggacataatcctcagacaaaacaagacaaatggacccatacttgtctacccaacaagtaggaaaagatgggatgataggatgtcagcaataataccagaagaagaaacattttattgtgtgggacttttacattcttcaagtggatataatgaatgcaaaattttggataatcaaaatgaagaaatattaaattattgtgataaagttggcctcaatataaagcaatatcttccacattacaagacaaaagaggattggatcaaacattttggtaaaaaatggaatatttttcaacaaagaaaagatctatttgatccaaagatgattctatcaccaggacaaagaatttttaattaggttttcatcaataaatagtacgatataatgatagggatgataaaagatgacaaatatttcgtgaaattagttgaaatgtgtaaaagttggctcgaacatcagaatcgtcctataaggctatagggtggtaaaaggtgacagatatttcgtgaaatcagttaaactatgtaaaagctgattcgaacatcagaatcgttaagggtaggagggagggttgtaagtttttaattgttggagttgatgtatttttattttattttattttggtgtgttagaaagataaattagatgatgtaaagcttttttagctaccatttaattataatatgtgaagtttgttttttatanacccccaaaaaaaaaaaacaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="9583" stop="5442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9299" g_stop="9235" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9234" i_stop="8444" i_length="791">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8443" g_stop="8316" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="193" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8315" i_stop="7954" i_length="362">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7953" g_stop="7690" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="455" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7689" i_stop="7493" i_length="197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7492" g_stop="7222" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="726" r_length="271" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7221" i_stop="6381" i_length="841">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6380" g_stop="5741" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="1366" r_length="640" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1373" polyA_stop="1390"/>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-U318164" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1368</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9299" e_stop="9235"/>
          <exon e_start="8443" e_stop="8316"/>
          <exon e_start="7953" e_stop="7690"/>
          <exon e_start="7492" e_stop="7222"/>
          <exon e_start="6380" e_stop="5741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGGTCAAACTTTTCGATATGGTCCTCAAATAAGTAACGTTCATGAGATGGATGTTATTACAGGTAAAATCTTACGTATAACACGTAAACATTATACTTTATTTTTCTCTATACTAAATAATTTAATGATAACTCTTCCAATATAATAGAAAAACTATATTGATATTTCATATATTCATTAAGTTCACTTAAAGATAAAAGGTCTTCCTATTATTATTATTTTATTGGGTATTTTCATGGAAAGTGTTCAAGTACAAAAATAAAAAAAAAAAGAGATGGGGGAGATAGTCACTATCAATATTTAGTTTAGATAAGAAATATAATCATGTTTGGAGCCTAACTAATATAAGATTCTTTTAGAAAAAAATTCATACTTTAATTTTATTTTTTCTTTTAATATTTAAAAGTATGTGTCTTAGTAAGTATTTCATAGGTTGCAATGTCTCTTTTTCCACCTGGAAGATCTTGTAGGTAAGATTTTTCACCTTATACTAAAATAAATATATCACAAAAATCTAAACTATATTTCTTTTATCATAGAAAAAATTGTCTATACTTCAATTAATTGCAAGTGGCTATATATATATATATATATATAATTGGTAATTTACTAGTGCATGCATGACCAAAAACATTCTTTATATATTAATTAATTTGGGGAATAATAATAATAATAATAATAATAATAATAATATATTTTTTGGTGATGCATGCTAATATATGATAATACAATTAAATTTATGATTTTTTTATTTAATTATTATTGAATATATGATAATACAATTAAATTTATGATTTTTTTTATTTAATTATTATTGTTTTTGTTGTTGTTGACTCATGTTTGGTTTCATCAGGTAAAGGGGAATTAATGACTTGCTCCAAAGATATGAATTCAGAATTGTTTTTTGGAGTTTTAGGAGGTTTGGGACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGAGTAAGTACGATGATATTTGACTGAACACGAAATTTATGAAGAAAAAAAAGATTTTTAAAATCGGTGAATTCTAGTCACCATTTTTATGTATGGTGTTTACTTGTATGTTTTCTGGATACATCTGATATATATATATATACTGCTTTCGGATAACAACTAAGAGATCTATTCGAGGAACCTAGCCTCTAAATAAACACACTTATCTAAGTTAAAAATTGTTTCTAAGTATTAATATGCTATTTTTCTCGAAACATATTAAAGAATAAAAAGTGTTATATATATAAACAGAACAAATAAATATTAGTTTAAACTTCAATTCTTACCTATGCAAATGTATAATTATGAATTTTTTTTTCTTGTAGGTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATGACCAAAATGCTAATACTATTGATAAGGTATGTATTTCTCAAATTTACGTGATTCACTTTTTTATACTCATATATATATATATTCAGTCAAAGTGCATTATATGCGTTGATTTTGAAATTGTCAATGTATTTTAACATGTTATTTTACTAAAGAGGTTCAATATCTTTTATATATATATAAGATTGATTTTTATATATACGTTGTAATTTTTTAACGATTGTAGAGGAGTTGAAGAAGTTGGTAAAAGGATTGAAGTATGTAGGTGGATTTATGTTCAAGAAAGATGTGAGTTTTGTGGAATTTTTGAATAGAGTTAGAAGTGGGGAATTAGAGTTACAATCAAAAGGAATGTGGGATGTTCCACATCCATGGCTCAATTTGTTTGTACCAAAGTCTTCTATCATGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAGGTACTCACAAAAACTATCATTTCACCCCCACCCCACCCCCTTAGGTAAGTAATATATAGTTATAATATACTATAATCTCCGTCAATTTTTAGTTGTTATAATTTTCCTTTTTTAGAGTTAAGTAATAATAATTTTGATTAATATTTCACGACGTGTATTTTTTTCATCATATTGATATGCAGATAGAATTTTATAGTACTTTTCGTATAGTTTTTGCATATCTATATTTTTTGTTTTAAATATCGAGTTAATGTAAGAAAAAGAGTGAAACTGACTTTCGAAAAGAGCAAGGTGACAAAATGGACATAGGGAATAGCACATCTTTTGTCTCAATTTATGTGATGTTTGTTCGATTTGAATTTTGATACAGAGTTTAAGAGAAAAAAAATGTAAGACTTTTGAAACTTCAATCTGAATTTAATTATAGATGTTTGTATGGTTATAAATTATCTGATTAAAGATAAAAATAAGCGTTTTAAAGTTAACTTGTTACTAAATATAGATATATCAATCATTATTTTTAGATTGCTTAATGTAAAAAAAGTGTGTTACATATATTATATTGAATATGAGAGAGTAGTATCGAGTTTAATATATATATATATATATATATATATATATATATATATTGGGAGAATTATTATAAAATTTAAGAGAGTTCAGTAAAACTCAATAACTTTATTCTTTAGCTTTATATTTATACTAAGAAGTTCAACTAATATATATATATATATAATATTTCTCTTTGTTATATTTTTAAGATTATACATGATATCTTATTGAGTGATTTAATATTATAAAAAAATATTATTTTTATTTATTTATTTTTGAAAATATGCAGATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGATCTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTATAAGGCTATAGGGTGGTAAAAGGTGACAGATATTTCGTGAAATCAGTTAAACTATGTAAAAGCTGATTCGAACATCAGAATCGTTAAGGGTAGGAGGGAGGGTTGTAAGTTTTTAATTGTTGGAGTTGATGTATTTTTATTTTATTTTATTTTGGTGTGTTAGAAAGATAAATTAGATGATGTAAAGCTTTTTTAGCTACCATTTAATTATAATATGTGAAGTTTGTTTTTTATAA</genome_strand>
        <mrna_strand>TAGTGGTCAAACTAACCGATATGGTCCGGAAATAAGTAACGTTCATGAGATGGATGTTATTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGGGAATTAATGACTTGCTCCAAAGATATGAATTCAGAATTGTTTTTTGGAGTTTTAGGAGGTTTGGTACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGA..........................................................................................................................................................................................................................................................................................................................................................................GTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATGACCAAAATGCTAATACTATTGAT-A-.....................................................................................................................................................................................................AGGAGTTGAAGAAGTTGGTAAAAGGATTGAAGTATGTAGGTGGATTTATGTTCAAGAAAGATGTGAGTTTTGTGGAATTTTTGAATAGAGTTAGAAGTGGGGAATTAGAGTTACAATCAAAAGGAATGTGGGATGTTCCACATCCATGGCCCAATTTGTTTGTACCAAAGTCTTCTATCCTGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGATCTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTATAAGGCTATAGGGTGGTAAAAGGTGACAGATATTTCGTGAAATCAGTTAAACTATGTAAAAGCTGATTCGAACATCAGAATCGTTAAGGGTAGGAGGGAGGGTTGTAAGTTTTTAATTGTTGGAGTTGATGTATTTTTATTTTATTTTATTTTGGTGTGTTAGAAAGATAAATTAGATGATGTAAAGCTTTTTTAGCTACCATTTAATTATAATATGTGAAGTTTGTTTTTTATAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318162" ref_strand="+" ref_description="SGN-U318162        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | FAD-binding domain-containing protein / cytokinin oxidase family protein, similar to cytokinin oxidase from Zea mays (gi:3882018) (gi:3341978) | chr5:23062170-23065494 REVERSE | Aliases: MHM17.8, MHM17_8(evalue: 5e-55, score=211) genbank/nr: gi|15241997|ref|NP_200507.1| cytokinin oxidase family [Arabidopsis thaliana] gi|20138027|sp|Q9LTS3|CKX3_ARATH Cytokinin oxidase 3 precursor (CKO 3) gi|8777437|dbj|BAA97027.1| cytokinin oxidase [Arabidopsis thaliana] gi|11120510|gb|AAG30906.1| cytokinin oxidase [Arabidopsis thaliana](evalue: 3e-53, score=211)">
      <seq>ctacttctaataatttccttttttttttctttcttctattatggctaagttttttttatcctatggttataatattattattttctttattattactcatttaatgtccattttaggaaagttaaaaccatggaatccttcaattccttatgaaattctttcacttaatatttcatcaaaacttagtacaaattctcatgctattaaagaatcttccaaagattttggaaaaattattcaagaaatattaccagctgctgttctttatccttcttgtgttaatgacataattgacctcatacaattttcttatgacctttctgtcccttttcatgtagcagccaaaggtcatggacattccattaggggacaagccatggcaaaaaatggggtaattgtggaaatgagttctttaaataataataataatgagaattgtggtgttagggtttcttgggattcggatttagggttttacgcggatgttggaggtgaacaattatggattgatgttcttcataacaccctagagtatggcttagcacctgtttcatggacagattatttgtaccttaccgttggtggtacactctctaatgctggaattagtggtcaaacttttcgatatggtcctcaaataagtaacgttcatgagatggatgttattacaggtaaaggggaatttatgacttgctccaaagatatgaattcagaattgttttttggagttttaggaggtttgggacagtttggaaatataacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10205" stop="8051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9905" g_stop="9235" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9234" i_stop="8444" i_length="791">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8443" g_stop="8351" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="764" r_length="93" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-U318162" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9905" e_stop="9235"/>
          <exon e_start="8443" e_stop="8351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTCTAATAATTTCCTTTTTTTTTTCTTTCTTCTATTATGGCTAAGTTTTTTTTATCCTATGGTTATAATATTATTATTTTCTTTATTATTACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATGTAGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAGTTCTTTAAATAATAATAATAATGAGAATTGTGGTGTTAGGGTTTCTTGGGATTCGGATTTAGGGTTTTACGCGGATGTTGGAGGTGAACAATTATGGATTGATGTTCTTCATAACACCCTAGAGTATGGCTTAGCACCTGTTTCATGGACAGATTATTTGTACCTTACCGTTGGTGGTACACTCTCTAATGCTGGAATTAGTGGTCAAACTTTTCGATATGGTCCTCAAATAAGTAACGTTCATGAGATGGATGTTATTACAGGTAAAATCTTACGTATAACACGTAAACATTATACTTTATTTTTCTCTATACTAAATAATTTAATGATAACTCTTCCAATATAATAGAAAAACTATATTGATATTTCATATATTCATTAAGTTCACTTAAAGATAAAAGGTCTTCCTATTATTATTATTTTATTGGGTATTTTCATGGAAAGTGTTCAAGTACAAAAATAAAAAAAAAAAGAGATGGGGGAGATAGTCACTATCAATATTTAGTTTAGATAAGAAATATAATCATGTTTGGAGCCTAACTAATATAAGATTCTTTTAGAAAAAAATTCATACTTTAATTTTATTTTTTCTTTTAATATTTAAAAGTATGTGTCTTAGTAAGTATTTCATAGGTTGCAATGTCTCTTTTTCCACCTGGAAGATCTTGTAGGTAAGATTTTTCACCTTATACTAAAATAAATATATCACAAAAATCTAAACTATATTTCTTTTATCATAGAAAAAATTGTCTATACTTCAATTAATTGCAAGTGGCTATATATATATATATATATATAATTGGTAATTTACTAGTGCATGCATGACCAAAAACATTCTTTATATATTAATTAATTTGGGGAATAATAATAATAATAATAATAATAATAATAATATATTTTTTGGTGATGCATGCTAATATATGATAATACAATTAAATTTATGATTTTTTTATTTAATTATTATTGAATATATGATAATACAATTAAATTTATGATTTTTTTTATTTAATTATTATTGTTTTTGTTGTTGTTGACTCATGTTTGGTTTCATCAGGTAAAGGGGAATTAATGACTTGCTCCAAAGATATGAATTCAGAATTGTTTTTTGGAGTTTTAGGAGGTTTGGGACAGTTTGGAATAATAACAA</genome_strand>
        <mrna_strand>CTACTTCTAATAATTTCCTTTTTTTTTTCTTTCTTCTATTATGGCTAAGTTTTTTTTATCCTATGGTTATAATATTATTATTTTCTTTATTATTACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATGTAGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAGTTCTTTAAATAATAATAATAATGAGAATTGTGGTGTTAGGGTTTCTTGGGATTCGGATTTAGGGTTTTACGCGGATGTTGGAGGTGAACAATTATGGATTGATGTTCTTCATAACACCCTAGAGTATGGCTTAGCACCTGTTTCATGGACAGATTATTTGTACCTTACCGTTGGTGGTACACTCTCTAATGCTGGAATTAGTGGTCAAACTTTTCGATATGGTCCTCAAATAAGTAACGTTCATGAGATGGATGTTATTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGGGAATTTATGACTTGCTCCAAAGATATGAATTCAGAATTGTTTTTTGGAGTTTTAGGAGGTTTGGGACAGTTTGGAAATATAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337416" ref_strand="+" ref_description="SGN-U337416        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | eukaryotic translation initiation factor SUI1 family protein, similar to SP:O43583 Density-regulated protein (DRP1 protein) (Smooth muscle cell associated protein-3) {Homo sapiens}; contains Pfam profile PF01253: Translation initiation factor SUI1 | chr5:3834015-3836247 FORWARD | Aliases: F14F18.70, F14F18_70(evalue: 3e-28, score=122) genbank/nr: gi|22326739|ref|NP_196751.2| expressed protein [Arabidopsis thaliana] gi|17381204|gb|AAL36414.1| unknown protein [Arabidopsis thaliana] gi|30793919|gb|AAP40412.1| unknown protein [Arabidopsis thaliana](evalue: 2e-26, score=122)">
      <seq>atcctttaaggggaacaagacgtcgtcgttttacgagacgattcgtcttcgagtttcagcgaatttatcggagcaacgaatcggagttttttcttttctttgagtttttgctttaatggcggaaaagcttcaaatagttgaggttctatattgtggagtttgcggtttacctgctgagtattgtgaattcggatccgaatttgagaaatgcaaaccctggttgatccaaaatgcacccgatctctacccggaccttgttaaagattctaatttgaaagaagctgataaggtctttgtttatctccagtcgacttcaatctcggaaggttcttctacatctaagaaagaataatttaagcgccttcctggtggaaagattatgaagaaagagaaacaggagatgattattgaaaaggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="23705" stop="27010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24005" g_stop="24267" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24404" g_stop="24466" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="326" r_length="63" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26641" g_stop="26702" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="388" r_length="62" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-U337416" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24005" e_stop="24267"/>
          <exon e_start="24404" e_stop="24466"/>
          <exon e_start="26641" e_stop="26702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTCTAAGGGGAAAAAGACGTCGTCGTTTTACGAGACGATTCGTCTTCAAGTTTCAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAGGTTAATACTAAAAACCCTAGAAATTATGGATTTTTTTTTATATTTTTGATTAATTCAGCTGTAAAATCAATTAGTTATCAATTTGCTTGTTTTTTTCTTTGTTTTTTTGGTTGATTAGTTTTTTTTTTTTGTGCAGATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAGGTAAAGTTTTTTTTTTTTCTGTAAGTTGAAACATGAGTGTCTTGATTTTAATGATTTTTTTTTAATAATGTGTCTATGGTATCCTATCATATTGTTTTGATGAGTACAATGTTGGAGAGATTGCGTTGTTTTTTGTCGTTACGTAATGTCACATGCCAGCAATTTGAAGGATAAACTTGCAAGAGAAGTAGTGTAGTATAGGCTTATAGCTACTATGAAAAGGTAGGGTACATGATAAAGTTAAGTTAAAATGAGAAAACAAGAATAAGCTAACGATGCGATCACACCGAATTGGTCGTTACATAATTAGACTTTTCGTCAATAAATAACCATATGCTACACTAAAATTTAAGTAACAATCAAAACTAACATTATATTTAAACTAAAACAATACCAACTAAATAGTGCCTCGTTTCGGTGCTTGGTGTTGTCCATTTTGTCTTGAACCATCTCAAAACCTACTGCCGTTAACGATTAGCTAGCTTACAATACAAAAAGAGGTGATCCACATCCTCACTGGAGCTCTTTACAGATATAACACCAACTATCATATGTAATCCTTCTCCTCAAATTTTGACTATTAGAATTGCTCCCATCGTGCCCCCTATGCCTAGATCGAGTGGCAAAAGGTGGAGGACTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACACCATGCAAGCGAATCCCGGCATTTAAGTGGAGAAGGGTACAGGGCCGGGTCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGACAGGTCACAAGATGGATTTCTCGGTTATAAAAAAGAAGGATTGCTCCCATTGTTGCCAATCAAGTGAAAAGGTGGCACTAGGAACGATCTACTGTCTCTCCCCCCTCCACCTCTATGAGTCATGGTTCAATGATGTATTCTGATTATAGAACATCTCAATTAAAGCTTTGAAATTCTGCTACCTCCAAATCCCAAAGGTCCCTCCTAATTGTAGGTCCAAGGAACACCACACTCTTGTAGTCTTCGTATATGTTGGATTCCATTCCTTTTGGCTCATGCTTCTTTTTATATTTAATGTGAGCCTCACAGTATTATCTCCAGACCATACGTGCTTCCAGAGGTTGATCCTGTTCTTGTTCTCTACCTTGAATGTTGTGTTTCGACTCTCTGTTCCTTCACATTGTTACTCTAAAGCTGCACCTAAAAGGAACAGTTATGCTTTTAGTCGTACAACTTCCTTCTGTGATTGCATATTTATCCACTCTGACCTTTCTTCGTAGTGCATGCTCCTCTACCCCCAATCTGCGCATCTTCTTCTCCAACAGAGCTATGTTATAAACACACAAAACTTTCATCCTAAGCTCTCTCTATTTCTTTAAGGAATCCATTGATTACATTGACTACTTTTTCAACAACCCTATGCAATAACTGCCTATTCGAGCCTAGCGCCACATCCGGTCACTGATGTGGTTGGACTAACTTCTTTACCCCCACTTGTCCATTTACCCACACTTGTCCATCACAGTGGAACCCTTGCTTATAGTCCTCACACCCAGGCGGAGATGTTGTGGAACCCTTTACCCATGTAACAGTATACTCAGGCACCAAATAATGCATGCCTAGACATTTCAACAAGTTCATTAATGAGTATTCATAAAATTTGATTACTATTTTATTCTTGTCCATCAACGTAGCTCATTCTCCTCCTTTATATGAAAAGAGTCAAGTTCCTTTTTGCTCATTTCAATTTCTCATTTCATAGTTTTGACTTAATAGGTATCAAGAACTACGAGTTTGATTTTGATAGTCATTTAGCTACCTTTCAACAAAATGAATCTTGTTCTTGGTATTTTCAATTTGGCAAGTGTTAGAGAACTCTGGTTTGATATTGAGTTTCACGCACATCTCATCCCACCTTCTCACGAATTGTATTATGTTCTTAATCTTCTTCATTCCATCTGCATTTCGTTTTTTTTATTGTCTGTTCTTGTAAGATAAATATTTATTGATGTTTTAAACCCTGTCTTTCTTACCTATGGGGCCAATAGTTGTAGGTTAAATTAAGAACTGTAGGCCTAGATTTGGATCTTTTTTTGCTTTTTGGATTTCATTTTATCTACTTCCATCTTCCCCCTTTGCATGTTAAAATTGAATTCTGTTCTTAACATTTCTGTTCCTTTTGTTGGGTCAGGTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAA</genome_strand>
        <mrna_strand>ATCCTTTAAGGGGAACAAGACGTCGTCGTTTTACGAGACGATTCGTCTTCGAGTTTCAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG........................................................................................................................................ATTCTAATTTGAAAGAAGCTGATAAGGTCTTTGTTTATCTCCAGTCGACTTCAATCTCGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCTACATCTAAGAAAGAATAATTTAAGCGCCTTCCTGGTGGAAAGATTATGAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321611" ref_strand="+" ref_description="SGN-U321611        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | eukaryotic translation initiation factor SUI1 family protein, similar to SP:O43583 Density-regulated protein (DRP1 protein) (Smooth muscle cell associated protein-3) {Homo sapiens}; contains Pfam profile PF01253: Translation initiation factor SUI1 | chr5:3834015-3836247 FORWARD | Aliases: F14F18.70, F14F18_70(evalue: 3e-67, score=252) genbank/nr: gi|22326739|ref|NP_196751.2| expressed protein [Arabidopsis thaliana] gi|17381204|gb|AAL36414.1| unknown protein [Arabidopsis thaliana] gi|30793919|gb|AAP40412.1| unknown protein [Arabidopsis thaliana](evalue: 3e-65, score=252)">
      <seq>acgtcgtcgttttacgagacgattcgtcttcaagttttagcgaatttatcggagcaacgaatcggagttttttcttttctttgagtttttgctttaatggcggaaaagcttcaaatagttgaggttctatattgtggagtttgcggtttacctgctgagtattgtgaattcggatccgaatttgagaaatgcaaaccctggttgatccaaaatgcacccgatctctacccggaccttgttaaagattctaatttgaaagaagctgataaggtcactgatcagctccagtcgacttcaatctcggaaggttcttctacatctaagaaagaagaagtcaagcgccttcctggtggaaagattaaaaagaaagataaacaggagataattattgaaaaggtcaccagaaacagacgaaagagtatcactaccatcaagggccttgaaatctttggtgttaaactaactgatgcttcgaaaaagcttggtaaaaagtttgctactggagcttctgtggttaagggcccgactgaaaaggagcagatcgatgttcaaggggacatatcctatgacattgtggacttcattacagaaacctggccagatgttccagagtccgcaatattcttcatagaagacggaaaaaaggttccagctgcataaactacggagatgacatccctgttcccagcagagtgtttcccaagcaaatgctcgtagcactgtgttcgttgaaatttgaggtgagaatatgtgttggctctatagatgtggctactatggttccaccctctatatagcaaataatataaaaaagcaaagaaacacgtcgtatcacataatgtcgtccattcttggtgaaggttcatgtaatcaatcgatcagacttgcttgagatagaggcgtagttgtgtttttggcattttgagcacatccaatcaccaatggcttttgatgtgaagtcaattttgttgaaccaaaaaaattacatttgtaaccccacctagtttatgtttcacatgcctaattaaaattttattaacattcctaagtgtgaatttacattctaaaatttcccaagtttcaattatatacaccatcaatgcantaataaaactttttactcattccttcaataaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="23724" stop="29469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24024" g_stop="24267" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24404" g_stop="24466" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="307" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26641" g_stop="26702" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="369" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26703" i_stop="28156" i_length="1454">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28157" g_stop="28238" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="451" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28239" i_stop="28333" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28334" g_stop="28401" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="519" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28402" i_stop="28478" i_length="77">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28479" g_stop="28562" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="603" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28563" i_stop="28637" i_length="75">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28638" g_stop="29168" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="1135" r_length="532" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-U321611" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1134</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24024" e_stop="24267"/>
          <exon e_start="24404" e_stop="24466"/>
          <exon e_start="26641" e_stop="26702"/>
          <exon e_start="28157" e_stop="28238"/>
          <exon e_start="28334" e_stop="28401"/>
          <exon e_start="28479" e_stop="28562"/>
          <exon e_start="28638" e_stop="29168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCGTCGTTTTACGAGACGATTCGTCTTCAAGTTTCAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAGGTTAATACTAAAAACCCTAGAAATTATGGATTTTTTTTTATATTTTTGATTAATTCAGCTGTAAAATCAATTAGTTATCAATTTGCTTGTTTTTTTCTTTGTTTTTTTGGTTGATTAGTTTTTTTTTTTTGTGCAGATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAGGTAAAGTTTTTTTTTTTTCTGTAAGTTGAAACATGAGTGTCTTGATTTTAATGATTTTTTTTTAATAATGTGTCTATGGTATCCTATCATATTGTTTTGATGAGTACAATGTTGGAGAGATTGCGTTGTTTTTTGTCGTTACGTAATGTCACATGCCAGCAATTTGAAGGATAAACTTGCAAGAGAAGTAGTGTAGTATAGGCTTATAGCTACTATGAAAAGGTAGGGTACATGATAAAGTTAAGTTAAAATGAGAAAACAAGAATAAGCTAACGATGCGATCACACCGAATTGGTCGTTACATAATTAGACTTTTCGTCAATAAATAACCATATGCTACACTAAAATTTAAGTAACAATCAAAACTAACATTATATTTAAACTAAAACAATACCAACTAAATAGTGCCTCGTTTCGGTGCTTGGTGTTGTCCATTTTGTCTTGAACCATCTCAAAACCTACTGCCGTTAACGATTAGCTAGCTTACAATACAAAAAGAGGTGATCCACATCCTCACTGGAGCTCTTTACAGATATAACACCAACTATCATATGTAATCCTTCTCCTCAAATTTTGACTATTAGAATTGCTCCCATCGTGCCCCCTATGCCTAGATCGAGTGGCAAAAGGTGGAGGACTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACACCATGCAAGCGAATCCCGGCATTTAAGTGGAGAAGGGTACAGGGCCGGGTCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGACAGGTCACAAGATGGATTTCTCGGTTATAAAAAAGAAGGATTGCTCCCATTGTTGCCAATCAAGTGAAAAGGTGGCACTAGGAACGATCTACTGTCTCTCCCCCCTCCACCTCTATGAGTCATGGTTCAATGATGTATTCTGATTATAGAACATCTCAATTAAAGCTTTGAAATTCTGCTACCTCCAAATCCCAAAGGTCCCTCCTAATTGTAGGTCCAAGGAACACCACACTCTTGTAGTCTTCGTATATGTTGGATTCCATTCCTTTTGGCTCATGCTTCTTTTTATATTTAATGTGAGCCTCACAGTATTATCTCCAGACCATACGTGCTTCCAGAGGTTGATCCTGTTCTTGTTCTCTACCTTGAATGTTGTGTTTCGACTCTCTGTTCCTTCACATTGTTACTCTAAAGCTGCACCTAAAAGGAACAGTTATGCTTTTAGTCGTACAACTTCCTTCTGTGATTGCATATTTATCCACTCTGACCTTTCTTCGTAGTGCATGCTCCTCTACCCCCAATCTGCGCATCTTCTTCTCCAACAGAGCTATGTTATAAACACACAAAACTTTCATCCTAAGCTCTCTCTATTTCTTTAAGGAATCCATTGATTACATTGACTACTTTTTCAACAACCCTATGCAATAACTGCCTATTCGAGCCTAGCGCCACATCCGGTCACTGATGTGGTTGGACTAACTTCTTTACCCCCACTTGTCCATTTACCCACACTTGTCCATCACAGTGGAACCCTTGCTTATAGTCCTCACACCCAGGCGGAGATGTTGTGGAACCCTTTACCCATGTAACAGTATACTCAGGCACCAAATAATGCATGCCTAGACATTTCAACAAGTTCATTAATGAGTATTCATAAAATTTGATTACTATTTTATTCTTGTCCATCAACGTAGCTCATTCTCCTCCTTTATATGAAAAGAGTCAAGTTCCTTTTTGCTCATTTCAATTTCTCATTTCATAGTTTTGACTTAATAGGTATCAAGAACTACGAGTTTGATTTTGATAGTCATTTAGCTACCTTTCAACAAAATGAATCTTGTTCTTGGTATTTTCAATTTGGCAAGTGTTAGAGAACTCTGGTTTGATATTGAGTTTCACGCACATCTCATCCCACCTTCTCACGAATTGTATTATGTTCTTAATCTTCTTCATTCCATCTGCATTTCGTTTTTTTTATTGTCTGTTCTTGTAAGATAAATATTTATTGATGTTTTAAACCCTGTCTTTCTTACCTATGGGGCCAATAGTTGTAGGTTAAATTAAGAACTGTAGGCCTAGATTTGGATCTTTTTTTGCTTTTTGGATTTCATTTTATCTACTTCCATCTTCCCCCTTTGCATGTTAAAATTGAATTCTGTTCTTAACATTTCTGTTCCTTTTGTTGGGTCAGGTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTTTCTCCTTTCTCAACAGAAGAGGCAGTAGGTAGATATTACAGAAATAAAAAGAGCTCAATCCAATTAGTTTACCAACCACAAAATCAGTACTGGTATAAACTTCGGAAGTTACTATGGACATCTTTATTGTTGGAAATCTTGCATCGTTACATACTTATAATTAATTTCAGTTGAGGTTTTCTGTGTAATTTTTCATTGCAGTGGTCAATATTTAATGCCCAGTCTGTGATATAACTGAAATATTTGGACTAATTCTTCTAATCTCTTTTATTATGTCAAATTAAAGGTTTGATCCTTGGGATCAAAGTAACTAAACCTGACTAGACGAATCTGGAAGGTCATTTAATGATCCTTTTTAGTAGCTGTCTGTTAAGATGCCTGCAGTTCAGATATGCATTCATTGTTGTGGATGCAGTATAGTATAGTTTATAGTATAGTAAGAAACTTGACTTTGTTTTCATGGCCTTGTCTCATGTGAATGATCACTGGCCGTAGGATATTTCATTTGGAGGAACTCTAGAAAATACCCTCTCCACTGGAAGTTCTCATGTCAGTTACTAAAATCAACAAGCTGAACTCACTAAATGCATCTAAAAGTTCCTGAGTGAATTTCATTGAAAGGATGTCATCTTAACTGGGCATGAAGATCCCAATTCCCATATCATTTGGCATGATCTAGTTACCATTCTGGCATGGTGAGCAGCAAATGAGGCTTATCTATTCGCACATTTCAACTTCCAATTGTCTCTTTATGTCTTTTTAGGTATTATTTCAATCTGGTGTATTCTTCTGCTCCTTCCCCCGCTCTTCTCAGGAGAACCTCATAAACAATGGTAACTGAAACCATCATCTGGGCCTAATTCCAACCTGAGTCCTCATTCCTCACTATAATTGAGCAGCTTTTCATATAACATGTCTTTCATTTCATGGCATAGTAATGGAGCCTTATCCATTGGTTTAGCAATGACGTCATGATCCAACAAGATAATGCTATGAAAATAAACTCATAAGCAAGTCTGCACGCTGTAAAACTTTCTTGGTTATATTGTAGGATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTGGTGAGTTGTATATTATCTTGTGTTGTCTCGTCTTTTTATCTCTCTGTCTTCAAAGTTGCTACAGTGTTTAGCTTTGCTTATTTCGGACATTTTAGGTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAGGTGCGTTGAAGTGTGTGCTTTTTAATTTTTACTCTGATACGAGTTAGATGGGTACCTAACCTGGATTGATGCTTCAGGGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGATGTATGTTGTCTCATCTTCTGATTATCGATTTCATATAATGTTAGCTAAAGTTCATTAGCGTGTTCCTGTTCTCAGGTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTGGCTACTATGGTTCCACCCTCTATATAGCAAATAATATAAAAAAGCAAAGAAACACGTCGTATCACATAATGTCGTCCATTCTTGGTGAAGGTTCATGTAATCAATCGATCAGACTTGCTTGAGATAGAGGCGTAGTTGTGTTTTTGGCATTTTGAGCACATCCAATCACCAATGGCTTTTGATGTGAAGTCAATTTTGTTGAACCAAAAAAATTACATTTGTAACCCCACCTAGTTTATGTTTCACATGCCTAATTAAAATTTTATTAACATTCCTAAGTGTGAATTTACATTCTAAAATTTCCCAAGTTTCAATTATATACACCATCAATGCA-TAATAAAACTTTTTACTCATTCCTTCAATA</genome_strand>
        <mrna_strand>ACGTCGTCGTTTTACGAGACGATTCGTCTTCAAGTTTTAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG........................................................................................................................................ATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTG...............................................................................................GTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAG.............................................................................GGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGAT...........................................................................GTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTGGCTACTATGGTTCCACCCTCTATATAGCAAATAATATAAAAAAGCAAAGAAACACGTCGTATCACATAATGTCGTCCATTCTTGGTGAAGGTTCATGTAATCAATCGATCAGACTTGCTTGAGATAGAGGCGTAGTTGTGTTTTTGGCATTTTGAGCACATCCAATCACCAATGGCTTTTGATGTGAAGTCAATTTTGTTGAACCAAAAAAATTACATTTGTAACCCCACCTAGTTTATGTTTCACATGCCTAATTAAAATTTTATTAACATTCCTAAGTGTGAATTTACATTCTAAAATTTCCCAAGTTTCAATTATATACACCATCAATGCANTAATAAAACTTTTTACTCATTCCTTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337417" ref_strand="+" ref_description="SGN-U337417        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | eukaryotic translation initiation factor SUI1 family protein, similar to SP:O43583 Density-regulated protein (DRP1 protein) (Smooth muscle cell associated protein-3) {Homo sapiens}; contains Pfam profile PF01253: Translation initiation factor SUI1 | chr5:3834015-3836247 FORWARD | Aliases: F14F18.70, F14F18_70(evalue: 1e-13, score=73.9) genbank/nr: gi|22326739|ref|NP_196751.2| expressed protein [Arabidopsis thaliana] gi|17381204|gb|AAL36414.1| unknown protein [Arabidopsis thaliana] gi|30793919|gb|AAP40412.1| unknown protein [Arabidopsis thaliana](evalue: 1e-11, score=73.9)">
      <seq>cgaatttgagaaatgcaaaccctggttgatccaaaatgcacccgatctctacccggaccttgttaaagattctaatttgaaagaagctgataaggtcactgatcagctccagtcgacttcaatctcggaaggttcttctacatctaagaaagaagaagtcaagcgccttcctggtggaaagattaaaaagaaagtaagaaatttccagcatttgtcgttttgtctaatgtatattaatccttctttcaaaatggcatggctctgtgccatccatgtgatattataagctctaagaaaatttgataagtgaagttcttgtaatcctcccattgtattcatgtactaaaacttttcattattgttccctgtaagccatcatcttaagattttaatttgaccaacatattatgaatcaggatcattctaattgaaaagtttctctcttttgctttgagatattaagttacaaatcttggttatatcatttatattcaaatattggatggatactattcacctagttgaactaacttgaagctgttatattttgtatgggttttccctgcaatgtgaatatgcaagcgtcctaagtagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="23900" stop="27405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24200" g_stop="24267" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24404" g_stop="24466" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="131" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26641" g_stop="27105" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="596" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-U337417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24200" e_stop="24267"/>
          <exon e_start="24404" e_stop="24466"/>
          <exon e_start="26641" e_stop="27105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAGGTTAATACTAAAAACCCTAGAAATTATGGATTTTTTTTTATATTTTTGATTAATTCAGCTGTAAAATCAATTAGTTATCAATTTGCTTGTTTTTTTCTTTGTTTTTTTGGTTGATTAGTTTTTTTTTTTTGTGCAGATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAGGTAAAGTTTTTTTTTTTTCTGTAAGTTGAAACATGAGTGTCTTGATTTTAATGATTTTTTTTTAATAATGTGTCTATGGTATCCTATCATATTGTTTTGATGAGTACAATGTTGGAGAGATTGCGTTGTTTTTTGTCGTTACGTAATGTCACATGCCAGCAATTTGAAGGATAAACTTGCAAGAGAAGTAGTGTAGTATAGGCTTATAGCTACTATGAAAAGGTAGGGTACATGATAAAGTTAAGTTAAAATGAGAAAACAAGAATAAGCTAACGATGCGATCACACCGAATTGGTCGTTACATAATTAGACTTTTCGTCAATAAATAACCATATGCTACACTAAAATTTAAGTAACAATCAAAACTAACATTATATTTAAACTAAAACAATACCAACTAAATAGTGCCTCGTTTCGGTGCTTGGTGTTGTCCATTTTGTCTTGAACCATCTCAAAACCTACTGCCGTTAACGATTAGCTAGCTTACAATACAAAAAGAGGTGATCCACATCCTCACTGGAGCTCTTTACAGATATAACACCAACTATCATATGTAATCCTTCTCCTCAAATTTTGACTATTAGAATTGCTCCCATCGTGCCCCCTATGCCTAGATCGAGTGGCAAAAGGTGGAGGACTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACACCATGCAAGCGAATCCCGGCATTTAAGTGGAGAAGGGTACAGGGCCGGGTCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGGACAGGTCACAAGATGGATTTCTCGGTTATAAAAAAGAAGGATTGCTCCCATTGTTGCCAATCAAGTGAAAAGGTGGCACTAGGAACGATCTACTGTCTCTCCCCCCTCCACCTCTATGAGTCATGGTTCAATGATGTATTCTGATTATAGAACATCTCAATTAAAGCTTTGAAATTCTGCTACCTCCAAATCCCAAAGGTCCCTCCTAATTGTAGGTCCAAGGAACACCACACTCTTGTAGTCTTCGTATATGTTGGATTCCATTCCTTTTGGCTCATGCTTCTTTTTATATTTAATGTGAGCCTCACAGTATTATCTCCAGACCATACGTGCTTCCAGAGGTTGATCCTGTTCTTGTTCTCTACCTTGAATGTTGTGTTTCGACTCTCTGTTCCTTCACATTGTTACTCTAAAGCTGCACCTAAAAGGAACAGTTATGCTTTTAGTCGTACAACTTCCTTCTGTGATTGCATATTTATCCACTCTGACCTTTCTTCGTAGTGCATGCTCCTCTACCCCCAATCTGCGCATCTTCTTCTCCAACAGAGCTATGTTATAAACACACAAAACTTTCATCCTAAGCTCTCTCTATTTCTTTAAGGAATCCATTGATTACATTGACTACTTTTTCAACAACCCTATGCAATAACTGCCTATTCGAGCCTAGCGCCACATCCGGTCACTGATGTGGTTGGACTAACTTCTTTACCCCCACTTGTCCATTTACCCACACTTGTCCATCACAGTGGAACCCTTGCTTATAGTCCTCACACCCAGGCGGAGATGTTGTGGAACCCTTTACCCATGTAACAGTATACTCAGGCACCAAATAATGCATGCCTAGACATTTCAACAAGTTCATTAATGAGTATTCATAAAATTTGATTACTATTTTATTCTTGTCCATCAACGTAGCTCATTCTCCTCCTTTATATGAAAAGAGTCAAGTTCCTTTTTGCTCATTTCAATTTCTCATTTCATAGTTTTGACTTAATAGGTATCAAGAACTACGAGTTTGATTTTGATAGTCATTTAGCTACCTTTCAACAAAATGAATCTTGTTCTTGGTATTTTCAATTTGGCAAGTGTTAGAGAACTCTGGTTTGATATTGAGTTTCACGCACATCTCATCCCACCTTCTCACGAATTGTATTATGTTCTTAATCTTCTTCATTCCATCTGCATTTCGTTTTTTTTATTGTCTGTTCTTGTAAGATAAATATTTATTGATGTTTTAAACCCTGTCTTTCTTACCTATGGGGCCAATAGTTGTAGGTTAAATTAAGAACTGTAGGCCTAGATTTGGATCTTTTTTTGCTTTTTGGATTTCATTTTATCTACTTCCATCTTCCCCCTTTGCATGTTAAAATTGAATTCTGTTCTTAACATTTCTGTTCCTTTTGTTGGGTCAGGTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTT</genome_strand>
        <mrna_strand>CGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG........................................................................................................................................ATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327052" ref_strand="+" ref_description="SGN-U327052        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to calmodulin-binding family protein [Arabidopsis thaliana] (TAIR:At2g26190.1); similar to putative calmodulin-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45140.1); contains InterPro domain IQ calmodulin-binding region (InterPro:IPR000048) | chr4:15944325-15947029 REVERSE | Aliases: None(evalue: 5e-124, score=441) genbank/nr: gi|51854438|gb|AAU10817.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 2e-123, score=445)">
      <seq>tcatttgaagaaaaaaaagggttgggattttattttctcatctttacaactttttgtgatatttgaggttataaggcttttttagtatcttgctaaaaagaacttgggagatgactgttcgatcgaatagctttaaaggaacacatttggaaactattatacaatcgaataatgaagtcgataagatgacaaggaagaattcgataaatttaaggaactgtgatccaaagaaactgatgttagagaccacattatcattcaagaatctggttcaagacttagatatatcagaatggaacgaaaaaaagacgagagcaacagtttcattacccgagccttcgattctgttttctccacgacctgttagtgagcttgatgctgctgctgttaagcttcagaaagtgtataagagttataggacaagaagaaatcttgcagattgtgctgttgtggttgaagaactatggtggaaggctttggatttcgcagctctcaaacggagttctgtttcgttcttcaacgtggagaaaccggaaactgctgtatcgcggtgggctagagcacgtacacgagctgccaaagttggtaaaggattgtcaaaagatgaaaaagctcagaaacttgctctgcagcattggctagaagctattgatccacgacaccggtatggtcacaacttacacttctactacgatatatggttcgaaagtgaaagctctcaacctttcttctactggttggatgttggagacgggaaagagataaatctcgagaagtgtcctaggttcaatctgcagcatcaatgcatcaagtatctaggacctaaagaacgtgaatcgtatgaagtagttattcaggacgggaaacttgtctataaacaaaacggtgtctttgtggagacagtagagggttcaaaatggatctttgttcttagcacaacaagaacattgtacgtaggaaaaaagaagaaaggtgtgtttgaacactcgagtttcctatcgggtggtgcaactactgctgctggtagactcgttgctcatggtggcgttttgaaggctatttggccatacagcggacactatcaccccacggaagagaacttccgggaattcattagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="29891" stop="33535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30191" g_stop="30257" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30258" i_stop="31293" i_length="1036">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31294" g_stop="31692" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="466" r_length="399" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31693" i_stop="32286" i_length="594">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32287" g_stop="32467" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="647" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32468" i_stop="32566" i_length="99">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32567" g_stop="32655" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="736" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32656" i_stop="32747" i_length="92">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32748" g_stop="32835" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="824" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32836" i_stop="32940" i_length="105">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32941" g_stop="33236" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="1120" r_length="296" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-U327052" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1120</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30191" e_stop="30257"/>
          <exon e_start="31294" e_stop="31692"/>
          <exon e_start="32287" e_stop="32467"/>
          <exon e_start="32567" e_stop="32655"/>
          <exon e_start="32748" e_stop="32835"/>
          <exon e_start="32941" e_stop="33236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTGAAGAAAAAAAAGGGTTGGGATTTTATTTTCTCATCTTTACAACTTTTTGTGATATTTGAGGTAATTTAATTTTTTTCCAATCTTTGATGTTGTTTTAAGACGTGGTGTTTTGTTTCTTTTTGTTTTTTGTTGTTCGAGTTTTAAGGTTCTTAGCATTGAATATATGGTATACGTATGTTTCGTGTTAAAAAGATTTGAGTTTTTGCTACGTTTCGATGGGCTTTAGTTTAATCTTTTGTAAGTTTTTGACCAAAAGTTTGATAATTTAGCTTAAGTGAAATTTTAATGTTTTTCACATATATATCTATGTTTCGTATCGAAAATACTAGTTATGCATCCGCCTCAGTATCTACTGAGCTTTAGAGGCCGATGTAAGTTTTCGATACGAGAGTATAAATATATAAGTAAAAAAATCTACTAAAATTTCAAAAAGATGTTGGATATGGGAACATAGTTTTAATTGTACTATGAATCTTAAAAGATTCGAATATATTTAGTTTAAATCCTGAACATGTCTCTAATAATAAGGTTTAGTTCAATTTTGTAATCAAGGTTACCTTTTTTTTAAAATCAAAAGTTTGATAATTTAGCTCAAGAACTTGAAATAATTGAAGTTTTTTTTTAATTCTAAAGTGGTGTTAGGAAGAGAAAAATATGTAGATGGATGAATTGATGATTTAGTTATATTTGCTAGTAATATTTTTTCTTTTTAGTTTATTCTTTGATCTTGAATCGAGGTTTTTTGGAAACAGTTTCTCTATCTCGAGGAGATAGGGTAAGGTTTGCGTACACTCTACCCTCTCGAGATGTATGTTGTTGTTGTAGTTCTTTCTTTGACCTTGAATCGATGGTTTTTTGAAAACAGTCTCTCTATTTCCACGAGGTAGAGGTAAAACTTGCGTACACTCTACCCTCTCGAGATGTATGTTGTTGTTGTAGTTGTAGTTCTTTCTTTGATCTTGAATCGAGGATCTTTTGGAAACAGTCTCTCTATCTCCATGAGGTAGGGGTAAGATCTGTGTACACTCTCGAGATGTGTTTGTTGTTGTTGTTGTTTGTTTGTTTGGCTTAATGGAATTATCCAACAAATTTGCAGGTTATAAGGCTTTTTTAGTATCTTGCTAAAAAGAACTTGGGAGATGACTGTTCGATCGAATAGCTTTAAAGGAACACATTTGGAAACTATTATACAATCGAATAATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATGGTATGTCGACTTAAAATCGAATCTTGATTTAATGTCTCTATTGTATTGTGTTGTTCGGTTTTTTTATAGACCTAATTGTGGGATTACACGGAATATGTTGTCGTTGTGTTGTCTGGTATATATGGTCTTTAACTTTTTTGAAAAAAAATTGAGTCTTGATTTGTAATGTCTCTGTTGTATTGTCTGGTTTATGGGGTCTTAACTTATTTCACAAAATCGAATCTTGATTTAATGTGTCTTCTATTGTATTGTTCGTTTTTTCCTGACCCAATTTGTGGGATTACACTGGATATGTTGTTGTTGTAATGTTCGGTTTATGGGGTCTTAAACTTTTTTGAAAAACTGAATCTTGATTTGTAATGTCTCTGTTGTATCTGGTTTATGGGGTCTTGACATTTTTGAAAAATCGAATCTTGATATAATGTGCCTATTGTATTGTCCGATTTTTCAGACCCCACGTATGGGATTACACTGAATATGTTGTTGTTGTATTGTCTCGTTTTACCAGATCCCACTTGTGGGATTACACTGGATATGTTGTTGTTGTTGTATTGTCGGTGTATTGAAGTGGTTGTGTTATATATGTATGTATAGGTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTCTTGAAATTTTTTCGAAATCTTGAATTATTTCAGTCAAAGGAGTTCCGATGATCACGAAACTGATTGTTTATATCTTCTGATGTTGGTCTAGATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTACTGGTGAGTGTTTTGTTCCAAGATTTTGAATGTGTAGTTCCGGAAGTTGAAATGCAACCTACCTGACATCTTACGTTGTCTATTTCTCGTTGTAGGTTGGATGTTGGAGACGGGAAAGAGATAAATCTCGAGAAGTGTCCTAGGTTCAATCTGCAGCATCAATGCATCAAGTATCTAGGACCTGTAAGTCCAAACTCTGCGATTTTTGTCCTAAAAAATGATAAGAACAACGAAATGATCCATTTTACGGCATTGTTGAATCTTAGAATGGTTCTTTTACTGTTTCAGAAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTATAAACAAAACGGTGTCTTTGTGGAGACAGTAGAGGGTTCAAAATGGATCTTTGTTCTTAGCACAACAAGAACATTGTACGTAGGAAAAAAGAAGAAAGGTGTGTTTCAACACTCGAGTTTCCTATCGGGTGGTGCAACTACTGCTGCTGGTAGACTCGTTGCTCATGGTGGCGTTTTGAAGGCTATTTGGCCATACAGCGGACACTATCACCCCACGGAAGAGAACTTCCGGGAATTCATTAGTTT</genome_strand>
        <mrna_strand>TCATTTGAAGAAAAAAAAGGGTTGGGATTTTATTTTCTCATCTTTACAACTTTTTGTGATATTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAAGGCTTTTTTAGTATCTTGCTAAAAAGAACTTGGGAGATGACTGTTCGATCGAATAGCTTTAAAGGAACACATTTGGAAACTATTATACAATCGAATAATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCT...................................................................................................ATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTACTG............................................................................................GTTGGATGTTGGAGACGGGAAAGAGATAAATCTCGAGAAGTGTCCTAGGTTCAATCTGCAGCATCAATGCATCAAGTATCTAGGACCT.........................................................................................................AAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTATAAACAAAACGGTGTCTTTGTGGAGACAGTAGAGGGTTCAAAATGGATCTTTGTTCTTAGCACAACAAGAACATTGTACGTAGGAAAAAAGAAGAAAGGTGTGTTTGAACACTCGAGTTTCCTATCGGGTGGTGCAACTACTGCTGCTGGTAGACTCGTTGCTCATGGTGGCGTTTTGAAGGCTATTTGGCCATACAGCGGACACTATCACCCCACGGAAGAGAACTTCCGGGAATTCATTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337212" ref_strand="-" ref_description="SGN-U337212        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | diacylglycerol O-acyltransferase / acyl CoA:diacylglycerol acyltransferase (DGAT), identical to gi:5050913, gi:6625553 | chr2:8433288-8436818 FORWARD | Aliases: F27F23.24(evalue: 4e-82, score=300) genbank/nr: gi|6625653|gb|AAF19345.1| diacylglycerol acylCoA acyltransferase [Nicotiana tabacum](evalue: 1e-90, score=331)">
      <seq>ttcccatgcttaaggaatggcatccctaagggagttgcaatggtgatctctttctttatatcggctgttttccatgagctgtgtattgctgttccttgtcggctattcaagttttgggcattccttggaatcatgtttcagattcccttggtcatactaacgaacttcctgcaaaacaagttcaaaaactcgaatgtgggcaacatgacattctggtgttttttctgcattgttggtcaaccaatgggtgtgcttctgtattcccatgatgtgatgaatagaaatggtagctcaagttaaagcttcatcgtttatcattttgttggcccgcgcctcacgagggagtattgcagtcttgaactatctgatgttttacttatatgcttgaaataaagaaaattcttttttaaaatttgcccccaaggaactgacccgaatcgttgctttgtattatatctttcttttgatatttaagaaatgtatattattttttgtttgggtaaaatgtaataagctcaaattagatatagtgtcctaatttcgaattttccctatttactatttcccatgcattattgttatatccattaggccatttgttgcccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37155" stop="35599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36853" g_stop="36806" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="78" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36805" i_stop="36674" i_length="132">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.099" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36673" g_stop="36611" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="141" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36610" i_stop="36441" i_length="170">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36440" g_stop="36387" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="195" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36386" i_stop="36294" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36293" g_stop="35899" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="590" r_length="395" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="619"/>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-U337212" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337212" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36853" e_stop="36806"/>
          <exon e_start="36673" e_stop="36611"/>
          <exon e_start="36440" e_stop="36387"/>
          <exon e_start="36293" e_stop="35899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAGGTATGTGGTTTTTGTTCCCTTCCATCATCCATTTTTAAACCAGGTGGCGTATATAAGCTTATAAAAACAAAAAACAATTACGTGTCAACAAAATGATTGGCTTTCGATGACATGTGGTATCGTTATCTTCAGCTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAGGTAATGGATCATTCACGTGTGTGTAGTATATACAAGTATATGTATGATGGATATATATTCGGGGATAAGAAACGAGATGTAGTCATAAAATAGTGACACTGGAGCAAAGTTTATGTATCATCATTTGACAGTGTGAATATTGACATTTAGTGATGTTTCTCTCTGAGCAGATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAATGTATGTCTTTCCGCCTTGTTTTCATAAGCTTTCGATGATTTATTCTCTTTTTCGTGGGCATATCCATTGACAGTACGTCTCAACTTTTTTCAGGTGGGCAACATGACATTCTGGTGCTTTTTCTGCATTGTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTCGATCATTTTGTTGGACCGCGACTCACTAGTGAGTATCGCAGTTTTGAACTATCTGATGCTTTACTTATATGCTTGAAATGGAGAAAATTCTTTTCTAAAATTTGACACCAAGGAATTGAACAGAATTGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATCATTTTTTGTTGAGGTAAAATGTAATAAGCTCAAATTAGTGATAGTGTTCTAATTTCGAATTTTCCCTATTTACTATTTGACATGCATTATCGTTATATACATTA</genome_strand>
        <mrna_strand>GGAGTTGCAATGGTGATCTCTTTCTTTATATCGGCTGTTTTCCATGAG....................................................................................................................................CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAG..........................................................................................................................................................................ATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAAT.............................................................................................GTGGGCAACATGACATTCTGGTGTTTTTTCTGCATTGTTGGTCAACCAATGGGTGTGCTTCTGTATTCCCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTTTATCATTTTGTTGGCCCGCGCCTCACGAGGGAGTATTGCAGTCTTGAACTATCTGATGTTTTACTTATATGCTTGAAATAAAGAAAATTCTTTTTTAAAATTTGCCCCCAAGGAACTGACCCGAATCGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATTATTTTTTGTTTGGGTAAAATGTAATAAGCTCAAATTAGATATAGTGTCCTAATTTCGAATTTTCCCTATTTACTATTTCCCATGCATTATTGTTATATCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320764" ref_strand="+" ref_description="SGN-U320764        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | diacylglycerol O-acyltransferase / acyl CoA:diacylglycerol acyltransferase (DGAT), identical to gi:5050913, gi:6625553 | chr2:8433288-8436818 FORWARD | Aliases: F27F23.24(evalue: 0, score=641) genbank/nr: gi|6625653|gb|AAF19345.1| diacylglycerol acylCoA acyltransferase [Nicotiana tabacum](evalue: 0, score=725)">
      <seq>cacgagatacttgttctggattttcgttgataaagaaacttctaaacggctatggtgtgaattcaacaaacaaataaacaaatccttctgcaaatctcaattttcatggcggcgggaagctctacacgtattttcctttgtatacttcaacaattgcttttatagagtcaaattcgacttgatacgatgacgatcaatccggagagtattacatcgtcaagcgacggcaataacaacctccgaaggcggcgtagcggcggcggcggcggtgatagatctgtgaatgatgtgacggagttggattcgagctctgtggatgcttcgagtagctcggatgatgtaacgagtgacgtcatggatggaagtggaaacggaggattggatagggtgagtgaggctgtgagtacgacgattgggaagattagtgatggagatggaattcaggaggagcagaggaaagcgaatgaaacgacgccgttgaagtatgtttatagagcgtcggcaccggctcaccggcggaacaaggaaagtcctcttagttcggccgctattttcaaacagagtcatgctggcttactcaatctctgtatagtggtgcttattgccgtaaacagcaggctgattattgagaatttgatgaagtatggcttgttaattgggtctggcttctggagtagttcaacatcagtaagagattggccacttctgatgtgctgtcttagtcttccgattttccctcttgctgcttttcttgtcgagaaaatggcacagaagaagtatatgactgaacatgtagttgtcactcttcacataattataacgacagcttccattttgtatccagttctggtcatcctcaggtgtgattctgcttttctatcgggtgtcacactgatgatgtttgcttgcattgtgtggatgaaactagtttcttatgcacatacaaattatgatatgagacagcttgcaaagtctgtgaatgagggtgagaattccgaaatcaactactcttacaatgttagtttcgagagtttggcttacttcatggttgctccaactttatgctatcagggttggctggcccgccaactcatcaagctggtaatttttacaggattaatgggatttatcattgagcagtatattaacccgattgtgcgaagctcacgacatccatttgaaggaaaccttttatacgccatcgagagggtattgaagctttcagttccaattttatatgtctggctctgcatgttctacagcctctttcatctttggttaaatatacttgcggaagttctgcgatttggggatcgtgagttctataaagattggtggaacgcaaaaacaattgatgagtattggagactttggaatatgcctgtacataagtggatggttcgtcacatctatttcccatgcttaagaaatggcatacctaagggagttgcaatggtgatctctttctttatatctgctgttttccatgagctgtgtattgctgttccttgtcggctattcaagttttgggcattccttggaatcatgtttcagattcccttggtcatactaacgaacttcctgcaaaacaagttcaaaaactcgaatgtgggcaacatgacattctggtgctttttctgcattgttggtcaaccaatgtgtgtgcttctgtattaccatgatgtgatgaatagaaatggtagctcaagttaaagcttcatcgtcgatcattttgttggaccgcgactcactagtgagtatcgcagttttgaactatctgatgctttacttatatgcttgaaatggagaaaattcttttctaaaatttgacaccaaggagagtgaacagaattgttgctttgtattatatctttcttttgatatttaagaaatgtatatcgatttttgttgaggtaaaatgtcataagctcaaattagtgatagtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="44826" stop="35655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44526" g_stop="44351" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44350" i_stop="44275" i_length="76">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44274" g_stop="43890" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="561" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43889" i_stop="42512" i_length="1378">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42511" g_stop="42431" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="642" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42430" i_stop="41672" i_length="759">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41671" g_stop="41598" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="716" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41597" i_stop="41516" i_length="82">
            <donor d_prob="0.825" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41515" g_stop="41440" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="792" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41439" i_stop="41229" i_length="211">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41228" g_stop="41161" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="860" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41160" i_stop="40389" i_length="772">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40388" g_stop="40265" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="984" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40264" i_stop="40084" i_length="181">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.761" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40083" g_stop="39997" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="985" r_stop="1071" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="39996" i_stop="39271" i_length="726">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="39270" g_stop="39202" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1072" r_stop="1140" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="39201" i_stop="39119" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="39118" g_stop="38982" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1141" r_stop="1277" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="38981" i_stop="38286" i_length="696">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="38285" g_stop="38204" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1278" r_stop="1359" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="38203" i_stop="38082" i_length="122">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.215" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="38081" g_stop="38061" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1360" r_stop="1380" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="38060" i_stop="37893" i_length="168">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.545" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="37892" g_stop="37830" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1381" r_stop="1443" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="37829" i_stop="36854" i_length="976">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="36853" g_stop="36806" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1444" r_stop="1491" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="36805" i_stop="36674" i_length="132">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.099" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="36673" g_stop="36611" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1492" r_stop="1554" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="36610" i_stop="36441" i_length="170">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="36440" g_stop="36387" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1555" r_stop="1608" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="36386" i_stop="36294" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="36293" g_stop="35955" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1609" r_stop="1948" r_length="340" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-U320764" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1947</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44526" e_stop="44351"/>
          <exon e_start="44274" e_stop="43890"/>
          <exon e_start="42511" e_stop="42431"/>
          <exon e_start="41671" e_stop="41598"/>
          <exon e_start="41515" e_stop="41440"/>
          <exon e_start="41228" e_stop="41161"/>
          <exon e_start="40388" e_stop="40265"/>
          <exon e_start="40083" e_stop="39997"/>
          <exon e_start="39270" e_stop="39202"/>
          <exon e_start="39118" e_stop="38982"/>
          <exon e_start="38285" e_stop="38204"/>
          <exon e_start="38081" e_stop="38061"/>
          <exon e_start="37892" e_stop="37830"/>
          <exon e_start="36853" e_stop="36806"/>
          <exon e_start="36673" e_stop="36611"/>
          <exon e_start="36440" e_stop="36387"/>
          <exon e_start="36293" e_stop="35955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAGATACTTGTTCTGGATTTTCGTTGATAAAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCGGTATGTTCACGTTCTACTCCATTTTTTTTTTTTGCTTCAAATTTCAACTTGATCATTACTTTCTAGTGATTTCTAGACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAGGTAAGTTCTGAATTTGAGGTACTTAATTAATTGTTTCGTTCATTACACTACTCGCTAAGCAAGGAATCAGGACTTTTTAGCTAATGTGATTGGTTGCTGAGGCATGATTTAAATTTTATGAATTCAAACTTAGACATGCTATTTGTTGTGATTTTAATCATTTTTACGTGTAAATTTATGTGTTTGCATCGATAGTAGTGCTTGGACACTCCATCTGCCACTGATTGGTCGTTGATTAGCTTTTTGAGCTACAGTAAAAAGTTGTTCTTCTGTTCAGCAGACTTTATTTTTAAACCTCACCACTATAATTATTTAAGAATTTGTTTCTAATTCTAATAAATAAAATACGTGTTAGGTTCCAGTAAGTATTGAGTACAATTCTGTCCAACAGAATCCATTAATCCAACTAGAAAACATTGCAAAGATGAAACTTTTGCCCAAGGGGCAAAAAATAAAAAATACTAGGTGATTCTTTCTGTTTGTTCTAGCCTCCTGATTCATGTTGTTGGTGGGAGGTGGCAGGTATCATGTGGACTTAATCGAGGTGCGCGAAAGTTGGCTCGGTCACCACGGTATAAAAAGGGACCTTTTGCACAAATGGCAATAATTTTGTTTCTACTTACACATGTACTTCAAGCAATAACTACCTCCATATTAGTTGGAAACATAGGCTGGTATTAGTAGGTTTGCTATGCTGAAAGCTGCAAACTACCTCGAGTATACTCAATTTTATCTCATAAGAAAGGACTTTAAATAAAAATCTCAGGAACCTATATTTTGTTCTCGGTTCTTTGGTTAAGTTCTTTTGGGTGCAAAAAGGATTACTCCAGGAGCACCAAAAAGGTATGCCAGTTGCCGACTTTCAACCAGTGAGCATCTTACGAGCAGCTATTGTTACCCTCAGCAGAGAGCATAGTAATTTTGTTAAGAGGGTCACGATCCTTGCAGGATTGAGGAAGATGCCATTTATAATGGAGCCTGGTCGCTATGATTTTAAGAACAAGATATGTGGAATAGACGATGAGCCAATGCGCCGTTTGGTTTGATTAAAAATAGAAGCTTTTGCTGTCAGTTGAATTTATTAAATTTTATTCCTATTGTATTGTGCTTAGTTTATGGGTGGAAAAGCAGTAGGTGACTTGACAATGATAGAATTGGCATATACTGTTTTAATTGCATTATCATCATTCACTAATGTTTCATAAGCTAACCAAGACAGTGGAAGTTAACAATTTCTGGTGTAAAGAATCTCAAATTCACAGTATTTGGAGTTGCATTCAGGTGTCTTATGGTGATATATAGCATAATTAGTCTGAATTCCCCGTAAATAAGTGGCTGTAGAGCGCTTCTCTAATTTAGTTGGTGCATCTTGTTGCAGAGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGAAGGTATGTATCTCTCTAATGTGAGTTCTCTGTTCCAGTTGGCTAGACAGTTGAAATCTTCCCCATATATGATTAATCTTTATTGACATCAAAGAATCACTCTTAGGGGTGGTAATGTGGCTGGCCGAACAAGTGAATAGCTTAGAATTGTAGTGTTTTATTAAAAACAATTGAAGGAAATCATAGGGTTATGTACTCTGAGAGCCCTAAGTGTTTAGTTTGTCATTGCAGTAGATGAATATGTATTTAATTAAGCACTTAGTGAGGAACCCACATCCCATATTGGGAGTATTTCCACCCTGAAATCTACTGGGAAATATGAAACTTTATAAATTGCTTTCCAAAGTGCTATGCTGTTGCCGGAAGATTATGGTCTCAAAATTCAAATAGTTATCATGAAAATCTGGAAAGGGGATGGGGATAATGGGTTTTGGAAGAATCTGATAGAGTGAGAACATGTGAATTGCAATTAGAATCATGAATTTTAGGGATTTTTTGTAAATAATTGAAAAATGACAGAAAAGTTGGAGGGTGAGGGGGAGAGGAACAAGGTGAGATGGCACATTATCATGGGAAAAAGCACAGTAGAAAGTGGCGGGCCGTGACGGTTGAAATCTCTCCTGTCTGAACTTGCCAACTTGCCCCGTTGCTCTCTCTAATCCCTGTAACGTCTTAGCAACTATCGGGTTATAAGATATGAATATATTTCAGAGGGTTCTTGGTGTTCATGTTGCACTGACAATATTCTGACTACTATTGCAGTATGGCTTGTTAATTGGGTCAGGCTTCTGGAGTAGTTCAACATCAGTAAGAGATTGGCCACTTCTGATGTGCTGGTAGTGTTCTTAAGACCTTTCTTAATCTGTGTATTATGCTCACATGCGAAATAAAACATTGAAGTTTTTTACTTACTTGCAGTCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACATGTAAGTCAGAATAACCTCTTCGTTCTTCACTTCCTCTTTTTGATAATTCTTCCATATCAATTAAATGTCACTGCTCAGACATGGACCAGTCACAGTGTTCAAGAAGGTATACACCAGAATAATTCTGGCTCTCATGACTTGTCTGAACTCGTGTTACCTTTTATTGTTTGACTTTATGTCCAGCCAGTAACTTTTCTAACTGATCCTGCAGGTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAGGTTTGTTCTCATACGAGGTCATGGAACTTTGATATATACATCCTCCTAAGAAGTTGCTAAGTGAGCCTTCACTGGCGGGATGTCTCTCAGTGTGTGTTGTAAAATTGAGGCGATGTTATGGTAGAACTGGTGAATTTAAATGTCAACGGTGCACTATTATCTGGGTTGTAGTAGTCGTGCTTATGAACTAATTTTAATTTCTAATTTGGATTTTCGTCAACAGATCATCTTTGAACATTAACCTGTTGCATTTTGGATTGTAACGGAACTTTATGGTTGAATTAGATTAAGAAATTAGAGAAGTAGTAAAAGAAAATTAGTCGTTTATCTGAATTAGAAATTTGTTGCATGCCACTATGTCCATATGGACAAGGGAACAAGTGAAACATTGCTAATTCAGAGTTTAAAGCCATATTTGAACTTAAATTCACATGGTTTATACTTCATCTATTTCAACGAATTGCAGTTTTTATTCTTTCGTCCATATAAGGATAGTTTATGTGGAATTATTATTTGTGCACTACGTGTATATGTTTTTATTTTTTCTTCGTTGCTCTTTTCTTCTCTATAGACAGTGGTTGCCTAAGGTCTAACGGATGCTTCTTTTCAATGCCTTTTGCCTTTGATTACACTGGGTCGGATAGCTGCTTGTTCAAACTGTGTTGAAATTTAAGTTGAGAGGAGAGGATCTTCAATTATGTTTGCCAACTCTATTTTTTTGCTTATGTACATTGAAATATCTAGTGAGTCAGAGGTATTTTCAATTTCACAGGTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAGGTATGACTAGTTTATTTCTTTGTCATGGATCCACATCTGATCTTGATTAAGGCTTCTCCTGAAAATTTTCTAGACAAACCAACTTCTCTATTTAAGCTTCGGTACTCGTTCTGGTATTTTGGTCATCTGAGATAATGTTCTGAATATGGAGTCTCTCAGTTAAGTTTTTAAATGTTTTCAGGGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAGGTAGGATCAGTTGACCTTTCTGAAGTTGTCAGTGACTTTCTTCCTTGGTAGAGTACTTACTACAAGTGCATTACAGCATCTGATGTTTCTCTAGATTCACCAAGATTTAATTAAATAACTCTGTTGAGCAATTTAGTTTGATTTTTGAAAAATTCCATTATCTTTTGTTTCCTGCCAAGTCTGCACAAATTTAAAGAGATTGTAGGTCTTTGATACTACTACCTTTTATGTGATTTTATTGCCAAGCATGTCCTTGCCTGAAGTATTCATATGCATGTTAAATGATGAAGCAATTGGACGTATGCGAAAAAGATTAAATTGGAGCACCAAATATTGATATGGTCGTTGGACAATTTTTTTCAGTCACGTGCTGATATTATTTTGGAGTAGTACTTTTATTATTGCGAACATGTGCAGATCCTGCTTACGTTTGGAAGTACTTGTATTTCATACTGTATAATACTTGAATGTGGTGTGGGCAGATTCAGTGGGGCTACAGTTGGTGAATACTACAACTGAGGCCCCTACGGTCCTTTTTCCCATGGATTGAAGTCAAATTCCTTTCATAGTAATAGGAAATCAAGTATCATCAGTCATCTAAAAATGAAAATTTCATGAAATTTTTTACCAACTCTCTTACTATTTGTTCCACCAACTCATTAGTTTTGGATATGTTTATTCTGTTATCTGAAGCTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAGGTAAGTTCTCTTGAGCTTGACAGTTCAACGTGCCTTCACTCCTGTCAAAGTAAACTATATTAACTTTGAGCATCTTAATACAGTATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTGGTATGTCCTCTATATATGATTTATAAATTTAGTATGCTTATGCATTTTATTTGTAGTTCATTGTCTTTCTTCCCATATTTTTGGATGTTCCAATCTTATTTGCGAGGTTTTTATACTTGATACTAAAACGAGTGTTAGGACATTCTTACTGTGTGTATTTTGTCATCATGCTTACCATTTTTTCATTTCAAATATGTTTAACTAAACAGTTTTGTGTCACTTATTAACCTTTAAAGTGCAAATCACATTATACTTGAAACTAGATTATCAAACTGCCATGAGTACTGAATTGAGGGGGCGAAAATTTGTAGAACCAGAAGGTGCAAAACTGGAGGTGCTTAATGAATCTGAGTGGTTTTAATTCAGTAAAATTATATTCCTCCTCGATATATCTATCCAAAGACCAACACATAGCTGGCAACTGTTAAATGCCGGAGCTGGAATTTGAATGGGTATACTGCAAGACTCTTGTGTTAGATTATGAAAAGGTTCACATTTCAGGATGAAACGCCAGGGACTTATTTTGTTTTAACTGAAAAACTACTAATATATCGATTATTTTCATATATGGATTATGTGTTCTAGCATTGCAACAGAATGAATTCTATTTACATAGTACATCTCTTTGTAGACTGAATATACTTGTGGATCTTACCGCAACAGAATAGCTCTATTTACATAATAATCACTCTGTAGGTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAGGTATATTAAAACATCATACTGTCTTGTTCTTTTTGTTTCTTCATCCCAACAATTTCAGAGCTTGCTAGAGTTTCTCATTTATTTCTTTTTTGTTGTTGCACCATTGTGGCTGCTGTTATCAGTATTGGAGACTTTGGAATATGGTATGTACTTCTTCCTTCTTTTTATGTCATTGCCGATTCTTATGCATGCAAATCATGTGTTTGTCTTCATTACCTAGAAGTGAAACTTTAATTAATATCGGCCTGGTTTAGTCTTTGTTGAACATTTTTTTGGACATTAAGTAACCCAAGTGTTGGTGACAACTGCAGCCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAGGTACTTTTGGAGTTCTCTCGTCCTAGTTTCTAATTTGTTTTTGAGCTATTTTTTGTCTGCTTACTTTCTAATCTTTTGTGCACTATTACAACAACTTACCAAGTATAATTCCAAAAGTGGGGTTTGGGTAGGGGGAGGTGTACACAACCCTTTGCCCCAACCCTTGAGGGGTAGAAAAAATGTTTCCGATAGACCCTCGATCGAGAACATGTCTGAAAGAATTGCAAAAGTAAAAAGCAATGATCAAAATAATGAAGAAAGAAAAGCAGCGACAATAAAATAGTGTAGATACCCAAAGTAAATGAATTAACTGTTACAATAATTGAAGGTTAAGATATTTATCCTTGTATGCTGAGGTTAAAATTTTATCTCACACAAACATACTGCTTTTCCTTTTCTTTTTTTTTCTTATATAACATAAGCACAATCATACTGCTCTTAACCATTAGCATACTTGTTGAAATTTGAAGAGAGAGAAAATAAAGAAGAAAGACAGCAAGGGACATACACACTTGCATATTGAAGAAACAAGCTTCGATGTGATTTTCAACACTTTAACTCGAGTGATCTTGCTAGATAATGAAATGCACTTCAAAGTAGAGCACATAAGCTATTCGTGCAGATAAGCTTTTGTGCGATTAATATCTTAATATACACGAGACATGGATGAAAAAGTTTTTTTCCTGATGAAGGTTAAAGTGCTATTAGTATTTATGTTTTGTGACAGAGAAGTGAGAACAGTATAATATACGATCAAATAAGTGTTTTTTGGGTCCACATTATACTTCATATCTTTCATGTCATTTATTTTTCAGTTTGAGTTTTAAGTGTATGCCTGGTATCAAGCACTAGTCGCTGCTTTGTATAGTTTTATCCGCTTTCTACTTTACAAAAGTTTTGGCCTTACTATTGTATACTAGATCTTATTTTGTGATCTGTTGAATTAGTTTTAATTGCCACTTGATTCTTGGTGCAGGGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAGGTATGTGGTTTTTGTTCCCTTCCATCATCCATTTTTAAACCAGGTGGCGTATATAAGCTTATAAAAACAAAAAACAATTACGTGTCAACAAAATGATTGGCTTTCGATGACATGTGGTATCGTTATCTTCAGCTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAGGTAATGGATCATTCACGTGTGTGTAGTATATACAAGTATATGTATGATGGATATATATTCGGGGATAAGAAACGAGATGTAGTCATAAAATAGTGACACTGGAGCAAAGTTTATGTATCATCATTTGACAGTGTGAATATTGACATTTAGTGATGTTTCTCTCTGAGCAGATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAATGTATGTCTTTCCGCCTTGTTTTCATAAGCTTTCGATGATTTATTCTCTTTTTCGTGGGCATATCCATTGACAGTACGTCTCAACTTTTTTCAGGTGGGCAACATGACATTCTGGTGCTTTTTCTGCATTGTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTCGATCATTTTGTTGGACCGCGACTCACTAGTGAGTATCGCAGTTTTGAACTATCTGATGCTTTACTTATATGCTTGAAATGGAGAAAATTCTTTTCTAAAATTTGACACCAAGGA-ATTGAACAGAATTGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATCATTTTTTGTTGAGGTAAAATGTAATAAGCTCAAATTAGTGATAGTGTT</genome_strand>
        <mrna_strand>CACGAGATACTTGTTCTGGATTTTCGTTGATAAAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCG............................................................................ACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCTTGTTAATTGGGTCTGGCTTCTGGAGTAGTTCAACATCAGTAAGAGATTGGCCACTTCTGATGTGCTG..................................................................................TCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACAT...................................................................................................................................................................................................................GTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAG.....................................................................................................................................................................................GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAG...................................................................................TATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAG..........................................................................................................................TATTGGAGACTTTGGAATATG........................................................................................................................................................................CCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAG....................................................................................................................................CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAG..........................................................................................................................................................................ATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAAT.............................................................................................GTGGGCAACATGACATTCTGGTGCTTTTTCTGCATTGTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTCGATCATTTTGTTGGACCGCGACTCACTAGTGAGTATCGCAGTTTTGAACTATCTGATGCTTTACTTATATGCTTGAAATGGAGAAAATTCTTTTCTAAAATTTGACACCAAGGAGAGTGAACAGAATTGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATCGATTTTTGTTGAGGTAAAATGTCATAAGCTCAAATTAGTGATAGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323380" ref_strand="+" ref_description="SGN-U323380        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | lycopene epsilon cyclase, identical to lycopene epsilon cyclase (GI:1399181) | chr5:23094491-23097262 FORWARD | Aliases: None(evalue: 0, score=393) genbank/nr: lycopene(evalue: 0, score=512)">
      <seq>gcacgagattctctctgttttcctccatccaaaaaaaaacagcaaaattcccaaaatctatatcaaattaatcttcaattcttgcaaatttcttcaagatttttcagttttcgaacacccaattgactaaaataatggaaaaagatctcagattttgaacatttttgaagaaaaaagaagcaaagaagctaagataaaaggggatatacttgaaaatggagtgtgttggagctcaaaatgttggagcaatggcagtttttacgcgtccgagattgaaaccgttggtcgggaggagagttatgccaagaaaaaagcaatctttttggcgtatgagcagtatgaaagtaaaatgtaatagcagtagtggtagtgacagttgtgtagttgataaagaagattttgctgatgaagaagattatataaaagccggtggttcgcaacttgtatttgttcaaatgcagcagaaaaaagatatggatcagcagtctaagctttctgatgagttacgacaaatatctgctggacaaaccgtactggatttagtggtaatcggctgtggtcctgctggtcttgctcttgccgcggagtcagctaaattggggttgaacgtggggctcgttgggcctgatcttcctttcacaaacaactatggtgtatgggaggacgagttcaaagatcttggtcttcaagcctgcattgaacatgtttggcgggataccattgtatatcttgatgatgatgaacctattcttattggccgtgcctatggaagagttagtcgccattttctgcacgaggagttactcaaaaggtgtgtggaggcaggtgttttgtatctaaactcgaaagtggataggattgttgaggccacaaatggccagagtcttgtaaagtgcgagggtgatgttgtgattccctgcaggtttgtgactgttgcatcgggggcagcctcggggaaattcttgcagtatgagttgggaggtcctagagtttctgttcaaacagcttatggagtggaagttgaggttgataaccaatccatttgacccgagcctgatggttttcatggattatagagattatctcagacacgacgctcaatctttagaagctaaatatccaacatttctttatgccatgcccatgtctccaacacgagtctttttcgaggaaacttgtttggcttcaaaagatgcaatgccattcgatctgttaaagaaaaaactgatgctacgattgaacacccttggtgtaagaattaaagaaatttacgaggaggaatggtcttacataccggttggtggatctttgccaaatacagaacaaaaaacacttgcatttggtgctgctgctagcatggttcatccagccacaggttattcagtcgtcagatcactttctgaagctccaaaatgcgcctctgtacttgcaaatatattacgacaacattatagcaagaacatgcttaccagttcaagtatcccgagtatatcaactcaagcttggaacactctttggccacaagaacgaaaacgacaaagatcgtttttcctatttggactggctctgatattgcagctggatattgaggggataaggtcatttttccgcgcattcttccgtgtgccaaaatggatgtggcagggatttcttggttcaagtctttcttcagcagacctcatgttatttgccttctacatgtttattattgcaccaaatgacatgagaaaaggcttgatcagacatcttttatctgatcctactggtgcaacattgataagaacttatcttacattttagagtaaactcctcctacaataattgttgaatcagaggcctcattacttcagattcataacagaaatcgcggtctctcgaggcattgtatataacattttcactagcttaatatgcttgaataagttgcatagtttcagtttttgtatctgcttctttttttgtcctagatcatgtattgatccaatctacatacattgccaatatatataaattttacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="49255" stop="55239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49548" g_stop="50050" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50051" i_stop="50956" i_length="906">
            <donor d_prob="0.424" d_score="1.00"/>
            <acceptor a_prob="0.598" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50957" g_stop="51128" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="675" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51129" i_stop="51844" i_length="716">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51845" g_stop="51980" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="811" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51981" i_stop="52092" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52093" g_stop="52203" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="922" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52204" i_stop="52282" i_length="79">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52283" g_stop="52385" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="923" r_stop="1025" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52386" i_stop="52701" i_length="316">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52702" g_stop="52845" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1026" r_stop="1170" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52846" i_stop="52941" i_length="96">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52942" g_stop="53049" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1171" r_stop="1278" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53050" i_stop="53135" i_length="86">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53136" g_stop="53232" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1279" r_stop="1375" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="53233" i_stop="53456" i_length="224">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53457" g_stop="53582" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1376" r_stop="1501" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="53583" i_stop="53795" i_length="213">
            <donor d_prob="0.705" d_score="1.00"/>
            <acceptor a_prob="0.513" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="53796" g_stop="53928" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1502" r_stop="1634" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="53929" i_stop="54552" i_length="624">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.459" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="54553" g_stop="54936" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1635" r_stop="2018" r_length="384" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2019" polyA_stop="2035"/>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-U323380" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2017</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49548" e_stop="50050"/>
          <exon e_start="50957" e_stop="51128"/>
          <exon e_start="51845" e_stop="51980"/>
          <exon e_start="52093" e_stop="52203"/>
          <exon e_start="52283" e_stop="52385"/>
          <exon e_start="52702" e_stop="52845"/>
          <exon e_start="52942" e_stop="53049"/>
          <exon e_start="53136" e_stop="53232"/>
          <exon e_start="53457" e_stop="53582"/>
          <exon e_start="53796" e_stop="53928"/>
          <exon e_start="54553" e_stop="54936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTTATTCTCTCTGTTTTCCTCCATCCAAAAAAAAACAGCAAAATTCCCAAAATCTATATCAAATTAATCTTCAATTCTTGCAAATTTCTTCAAGATTTTTCAGTTTTCGAACACCCAATTGACTAAAATAATGGAAAAAGATCTCAGATTTTGAACATTTTTGAAGAAAAAAGAAGCAAAGAAGCTAAGATAAAAGGGGATATACTTGAAAATGGAGTGTGTTGGAGCTCAAAATGTTGGAGCAATGGCAGTTTTTACGCGTCCGAGATTGAAACCGTTGGTCGGGAGGAGAGTTATGCCAAGAAAAAAGCAATCTTTTTGGCGTATGAGCAGTATGAAAGTAAAATGTAATAGCAGTAGTGGTAGTGACAGTTGTGTAGTTGATAAAGAAGATTTTGCTGATGAAGAAGATTATATAAAAGCCGGTGGTTCGCAACTTGTATTTGTTCAAATGCAGCAGAAAAAAGATATGGATCAGCAGTCTAAGCTTTCTGATGAGGTGATTGTAAATAATTTGAAGTTATATAGTAGTCGTTTGACTCAGTTCACCGAGGACATGACCTTAAACGTAGTAGAATTCTTATCCTTTTAGTAGTATTATTTAGTTATTGTGTAGTTTCTTATTCTTTGATGTGTAACTAGACCAAAAATGATCTTTAGCTCTAGTTAATTAACGGGCAATAACTTAGTTGCTGCTAAATATGTATTTTTAGTGGCAAATAACACTCTTTGTGAATGTCTCTAAAAGCTATAGTGACACTGGATCTAATTAACTAATGACGGTAAAAACTTAGCACTCTTTGTTAATGTATATATTTATTGCTGCTAAAAACTATTTTTGTTGTAGTATGTATTGCTATATGTTGCTGCATTTGTTTTTTATCTTTCTACTTTGTTGTCGTGTCGGATTCTTCCCTTTTGAGCCAAGGGTTTGATAAGCCATGTGTGTTCCATAGTTATTCAAGGAGGAAGAAGCGGAGAAATATAGGAGAAGATAAATCAGTTTCTTTCCATTTTTAGGAGTTATTTGGAAGTTCCTTATGGTTACTAGAAGTTATGTGTCTTTATCCTAACTGGTTATGAAGTAGGTATATTTAGTTATTATATAAATAATAGATCTAGTAATGTAGCTATGTTGAAAATTAATCTTTTATATGCAAAAAGATTACTCTGGAGATAGGAGATACTTGTGTCTCTTTTTGTATTTTCTATCTCTTTTCTCCAATATAAAACTTCGGTTTTCTATAAGGATCTTTCGCAGAAAACCTCTATACCTTACAAAGATAGGGGTAAGGTTTGCGTACATACCACCCTCCTCGGACCACACTTGTGGGATTACACTGAGTATGTTGTTGTACTGTAGCATACTATATTGCTTTGTTCATCATACTATCTCAGCTTGCAGTTACGACAAATATCTGCTGGACAAACCGTACTGGATTTAGTGGTAATCGGCTGTGGTCCTGCTGGTCTTGCTCTTGCCGCGGAGTCAGCTAAATTGGGGTTGAACGTGGGGCTCGTTGGGCCTGATCTTCCTTTCACAAACAACTATGGTGTATGGGAGGACGAGTTCAAAGGTTGTAATCTTTATTTTATTTTCATGAAGAGTCTTTTCGTGTCTACATATCCTTTCATGAAACAGGACATCTTATTTTCCGGACTTTAGTCAGACTTCTGCATGTAGGCTTATTACTAAAAGATTTCTTGAAGCACATTGGACTTACATTCTCCTTTTAGCAATACGTCTACTTGAGATTCCTAGTAATTGTTAATTTCTCAGACATACTATGATCCTTTATCTTAATCTAATTTAAAATGATTAGATCCTCGCGTTTAACTTTCATTAAGAGTAAATATTAAGAAGGGTCTTAGAATACAAAGTATGATGGTAATCACTAGAAGTGCGTATGCAAGGGGACATTCGAATATGTGGTTTATTTTAGTAGTTCAAAGAGTCCAAAACCTTATCATATTTCTCTTCAAGAACCAAATGATTAAACGGATCAAGAATGCAAAATAATCTGAACAAAGGTGACCATAAGGAATAACAGAAAGTTACAAAAGTGTCTCAAAAACAAGTCACGGGATATCAATGGTCCAACGATAGGAGACTTGGTGATATCGGGAAATAACTTACCTTGGCTTAGTGAAAATTGATAAAATTAAGATGATGATAGCAGAAGATTCACTTTATTTTAGTTACATGCATGAACACAGGGTCTGTCATTATTTGTTTTGAGGTTTCTGATGCTCGATTAGTCTTTCAAATGATGTTTATATCTTCTTTTTTCAGATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTGATGATGATGAACCTATTCTTATTGGCCGTGCCTATGGAAGAGTTAGTCGCCATTTTCTGCACGAGGAGTTACTCAAAAGGTAAAATTTACTTAACTTGTTCCTTAGGTCATACGAATCGTTAATTTATTCTTTACAATATGTTTCATCATTTTAGTTTCCTTAAAGGTGTAATTCACATTAATCTTCCTAGGTGTGTGGAGGCAGGTGTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCAGAGTCTTGTAGAGTGCGAGGGTGATGTTGTGATTCCCTGCAGGTATAGCTTTTGTTTTGTCACTTTTTAGACTTGAAATTTGACTTCTTCTCATTTTGAAACTTCTAACTTACGATAACAGGTTTGTGACTGTTGCATCGGGGGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTAGAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAGGTAGAGAAAAATCATCTAACATAGACATAAGAGTAATTCTGAAAGTTTTTGCATGTTGTGCACCTGAAAGACTTTAAACTTGATAAGTTTATGTGAGCAAATTGTCTCATTTTTCCTTTTCTTGGTCTATCGTTACTTTATTTAATAGGTTGGTGCTCGTCTAGGGTATATGCATTCAATTTGGCTATTGTGTTTCTATTGTTAACTTAGAATCGGACTTCCTATTCATCTGATAAAAAGCCAACTGCCATATTGTGACATATAAGCTCCGTTGGTTTTGTAATCGTATGGTTGTTTGTTGTTTTCCGAATTTCAGGTTGATAA-CAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATTATAGAGATTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTTTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAGGCTAGTTTCTGATATTATGCCAACTAGTTTTTGTTATTATGCTCCACACATTACTACAATTGGCTATGTGGGACTTATATCTGTATCTGTCTGCAGGAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGCTACGATTGAACACCCTTGGTGTAAGAATTAAAGAAATTTACGAGGAGGTAATCCAATCCACCTTTCGTTATGTGCAATTTTTGTTTTTAGTCTAGAGAACGACAACCATGACGTTAGTGAAATTTTTATGCAGGAATGGTCTTACATACCGGTTGGTGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAGGTAATACGAGAAGAAAATACATTACTCTTAATGTAAAAAAAGCGCAGCCCGGTACATTAAGCTCTTGCTATGTGCGGGGTCTGGGGAAGGATTGGACCACAGGGGTCTACTGTACGCAACCTTACCCTGCATTTTTGCAAGAGGCTAATTTCACAGCTTGAACCCATGACCCTAATATGGTGTTCTTTATATGCTGATTTCTGAAACTTGTACTGCATAAACAGGTTATTCAGTCGTCAGATCACTTTCTGAAGCTCCAAAATGCGCCTCTGTACTTGCAAATATATTACGACAACATTATAGCAAGAACATGCTTACCAGTTCAAGTATCCCGAGTATATCAACTCAAGGTACATGAGATACATTTCTGCTGTTCTGGATTTCATTGATGTCATTTCAACCTATGTTGCTCAGACTCTTCAAAAATGCCACTGGACGCGTGTTGGATCCTCCAAAAGTAGTGCATTTTTGGTGAATCCAACACATTTGACGACATTTGTGGAGAATCCAAGCAACATAGATTCTGACCCTTCTGAACTAAGCAAGTGTTCATCTTTTATCAGCTTGGAACACTCTTTGGCCACAAGAACGAAAACGACAAAGATCGTTTTTCCTATTTGGACTGGCTCTGATATTGCAGCTGGATATTGAGGGGATAAGGTCATTTTTCCGCGCATTCTTCCGTGTGCCAAAATGGTATGGCTTGATCTTTCTCCTTCATCTCATTATTTTTGTTAACGAGTTTAAATTCTATACACTAATAACTTCTACACAAATTAGATCAGATGAAAGATAACTACATGTAACCGTTCATAAAGTGGAATCAGTAACATTGAAACTGAGGCAGGCAACATCTTACAACATGTTGAAGTACTTTGATAGTGTAAAAGTTCGTTAGACAGACAGTATATATAAGTTAAATCCTTTTTGAATACATAAGACACTTTTGTTTTGAATAGTGACAATATTGTACTTTCAGTTCTAATGAGAAATCACGTCACTTGAAAGATAATTACATGTAACCATTCATAATAAGTTGGATCGGTAACATAGAAAATAAGGAAGGTAACCTCCTATAACATGTTACAATACTGTCAGTGTATATAAGCTAAATCCTTTTTGAATACACAAGACACTTTCGTTTTGAACAATGAGAATTTCAGTACTAACATGTAATCGTTCATAATAAGTTAAGATTAGTAACATAGAAAATAAGGAAGGTAATTCACATCCTACAACATGTAAAAGTACGTTGATAGCGTATACTGTCAGTGTATATAAGTTACATCTTTCAGTAACGAGAAAGTGTTTTTCGTTCAGGATGTGGCAGGGATTTCTTGGTTCAAGTCTTTCTTCAGCAGACCTCATGTTATTTGCCTTCTACATGTTTATTATTGCACCAAATGACATGAGAAAAGGCTTGATCAGACATCTTTTATCTGATCCTACTGGTGCAACATTGATAAGAACTTATCTTACATTTTAGAGTAAACTCCTCCTACAATAATTGTTGAATCAGAGGCCTCATTACTTCAGATTCATAACAGAAATCGCGGTCTCTCGAGGCATTGTATATAACATTTTCACTAGCTTAATATGCTTGAATAAGTTGCATAGTTTCAGTTTTTGTATCTGCTTCTTTTTTTGTCCTAGATCATGTATTGATCCAATCTATATACATTGCCAATATATATAAATTTTACA</genome_strand>
        <mrna_strand>GCACGAGATTCTCTCTGTTTTCCTCCATCCAAAAAAAAACAGCAAAATTCCCAAAATCTATATCAAATTAATCTTCAATTCTTGCAAATTTCTTCAAGATTTTTCAGTTTTCGAACACCCAATTGACTAAAATAATGGAAAAAGATCTCAGATTTTGAACATTTTTGAAGAAAAAAGAAGCAAAGAAGCTAAGATAAAAGGGGATATACTTGAAAATGGAGTGTGTTGGAGCTCAAAATGTTGGAGCAATGGCAGTTTTTACGCGTCCGAGATTGAAACCGTTGGTCGGGAGGAGAGTTATGCCAAGAAAAAAGCAATCTTTTTGGCGTATGAGCAGTATGAAAGTAAAATGTAATAGCAGTAGTGGTAGTGACAGTTGTGTAGTTGATAAAGAAGATTTTGCTGATGAAGAAGATTATATAAAAGCCGGTGGTTCGCAACTTGTATTTGTTCAAATGCAGCAGAAAAAAGATATGGATCAGCAGTCTAAGCTTTCTGATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGACAAATATCTGCTGGACAAACCGTACTGGATTTAGTGGTAATCGGCTGTGGTCCTGCTGGTCTTGCTCTTGCCGCGGAGTCAGCTAAATTGGGGTTGAACGTGGGGCTCGTTGGGCCTGATCTTCCTTTCACAAACAACTATGGTGTATGGGAGGACGAGTTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTGATGATGATGAACCTATTCTTATTGGCCGTGCCTATGGAAGAGTTAGTCGCCATTTTCTGCACGAGGAGTTACTCAAAAG................................................................................................................GTGTGTGGAGGCAGGTGTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCAGAGTCTTGTAAAGTGCGAGGGTGATGTTGTGATTCCCTGCAG...............................................................................GTTTGTGACTGTTGCATCGGGGGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTAGAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAG............................................................................................................................................................................................................................................................................................................................GTTGATAACCAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATTATAGAGATTATCTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTTTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAG................................................................................................GAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGCTACGATTGAACACCCTTGGTGTAAGAATTAAAGAAATTTACGAGGAG......................................................................................GAATGGTCTTACATACCGGTTGGTGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAG................................................................................................................................................................................................................................GTTATTCAGTCGTCAGATCACTTTCTGAAGCTCCAAAATGCGCCTCTGTACTTGCAAATATATTACGACAACATTATAGCAAGAACATGCTTACCAGTTCAAGTATCCCGAGTATATCAACTCAAG.....................................................................................................................................................................................................................CTTGGAACACTCTTTGGCCACAAGAACGAAAACGACAAAGATCGTTTTTCCTATTTGGACTGGCTCTGATATTGCAGCTGGATATTGAGGGGATAAGGTCATTTTTCCGCGCATTCTTCCGTGTGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGCAGGGATTTCTTGGTTCAAGTCTTTCTTCAGCAGACCTCATGTTATTTGCCTTCTACATGTTTATTATTGCACCAAATGACATGAGAAAAGGCTTGATCAGACATCTTTTATCTGATCCTACTGGTGCAACATTGATAAGAACTTATCTTACATTTTAGAGTAAACTCCTCCTACAATAATTGTTGAATCAGAGGCCTCATTACTTCAGATTCATAACAGAAATCGCGGTCTCTCGAGGCATTGTATATAACATTTTCACTAGCTTAATATGCTTGAATAAGTTGCATAGTTTCAGTTTTTGTATCTGCTTCTTTTTTTGTCCTAGATCATGTATTGATCCAATCTACATACATTGCCAATATATATAAATTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333076" ref_strand="+" ref_description="SGN-U333076        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G57035.1 | Symbol: None | protein kinase family protein, contains Pfam profile: PF00069 Eukaryotic protein kinase domain | chr5:23097978-23101192 FORWARD | Aliases: None (evalue: 3e-93, score=338) genbank/nr: gi|22327904|ref|NP_680448.1| protein kinase family [Arabidopsis thaliana](evalue: 2e-91, score=338)">
      <seq>gatgcactattatcatctgatggcagatatagaaggtttactagacgagagattgaggttgcaactgactacttttccgagtctaagatgattggtgaaggagcatacgggaaagtttacaaaggcgatcttgatcacacccctgttgccatcaaagttcttcattctgatgcatcagaaaagaaagaggaatttctaaaagaggtggaggttcttagccagttacatcacccacacattgttttactgcttggagcctgtcctgaaaatggttgccttgcttatgagtatatggagaatggaaacctggaagattacatattggaacggaacagcaaaccattaccttggttttctcgattcaggatactttttgaagtggcatgtgctcttgcattcctacacaactcaaagcctgagcctgttattcatcgagatctgaaaccaggaaatatattgttggacaaaaattttgtgagcaaaataggagatgtaggtctagcaaagattatatcagatgttgtaccagaaaatgttacagaatacaggaactctgttcttgctggcacccttggttacatggatccagagtatcaaagaactggcacactcagaccaaaatctgatctgtatgcttttggaataataatacttncattactaactgctcgtcgtcctaatggccttataatgaaatttgagaatgctataaattgtaattcattagtggatatacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="58736" stop="60678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59036" g_stop="59239" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59240" i_stop="59841" i_length="602">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59842" g_stop="60378" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="741" r_length="537" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-U333076" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59036" e_stop="59239"/>
          <exon e_start="59842" e_stop="60378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCACTATTATCATCTGATGGCAGATATAGAAGGTTTACTAGACGAGAGATTGAGGTTGCAACTGACTACTTTTCCGAGTCTAAGATGATTGGTGAAGGAGCATACGGGAAAGTTTACAAAGGCGATCTTGATCACACCCCTGTTGCCATCAAAGTTCTTCATTCTGATGCATCAGAAAAGAAAGAGGAATTTCTAAAAGAGGTGTTTCTTCAAGATTTGATGTTTTCTCTTTCATTTCAAGATATGCAATTTTAGACATGCCTCCTTTTACAGAAAAGTTACGCATAGTCCATCTTCTTGATGCTGTTATTAATACCACTTATCTTATCAAAAAAAAAAAAAGAAATGTTACGCATAGTGTAGTGGAAAGACCCCTCGACCTTCTCAAGCAAGAGTTTTGAGGTTCGAGTCACCAGGGAGCAAAGTGACAAAAGGGCCACTATTGACTCTTTGGTAGGGGGATGGAGTTCACCATATCAATTAATAAGAGAAGAACCATCCCCTATTGTATTCCTAGGTGCTGTAGTTTATAGTTTCAAACACTTATGCAGTAGTTTATAATTTCAAACAGTTTTGCAGTATCATTGTTAACACATAACAAGACTTCCAACTTCACACCTTACATGCCTTGTCCTTTTTTCCTCAAAAGCGCTCCTCATACATCATGCATTAGCTCTTATGCACAATTATTTGTGTCAGGAATTCATGGATCGTTTACCAGATATAGTTTGTCCCAGATCTAATTGTAGTCTTTTATAGCAGATATCCTCAATTTCTGTTGATATAGTAGTAATCATTTGTAGGTGGAGGTTCTTAGCCAGTTACATCACCCACACATTGTTTTACTGCTTGGAGCCTGTCCTGAAAATGGTTGCCTTGCTTATGAGTATATGGAGAATGGAAACCTGGAAGATTACATATTGGAACGGAACAGCAAACCATTACCTTGGTTTTCTCGATTCAGGATACTTTTTGAAGTGGCATGTGCTCTTGCATTCCTACACAACTCAAAGCCTGAGCCTGTTATTCATCGAGATCTGAAACCAGGAAATATATTGTTGGACAAAAATTTTGTGAGCAAAATAGGAGATGTAGGTCTAGCAAAGATTATATCAGATGTTGTACCAGAAAATGTTACAGAATACAGGAACTCTGTTCTTGCTGGCACCCTTGGTTACATGGATCCAGAGTATCAAAGAACTGGCACACTCAGACCAAAATCTGATCTGTATGCTTTTGGAATAATAATACTTCAATTACTAACTGCTCGTCGTCCTAATGGCCTTATAATGAAATTTGAGAATGCTATAAATTGTAATTCATTAGTGGATATACTTGAT</genome_strand>
        <mrna_strand>GATGCACTATTATCATCTGATGGCAGATATAGAAGGTTTACTAGACGAGAGATTGAGGTTGCAACTGACTACTTTTCCGAGTCTAAGATGATTGGTGAAGGAGCATACGGGAAAGTTTACAAAGGCGATCTTGATCACACCCCTGTTGCCATCAAAGTTCTTCATTCTGATGCATCAGAAAAGAAAGAGGAATTTCTAAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGTTCTTAGCCAGTTACATCACCCACACATTGTTTTACTGCTTGGAGCCTGTCCTGAAAATGGTTGCCTTGCTTATGAGTATATGGAGAATGGAAACCTGGAAGATTACATATTGGAACGGAACAGCAAACCATTACCTTGGTTTTCTCGATTCAGGATACTTTTTGAAGTGGCATGTGCTCTTGCATTCCTACACAACTCAAAGCCTGAGCCTGTTATTCATCGAGATCTGAAACCAGGAAATATATTGTTGGACAAAAATTTTGTGAGCAAAATAGGAGATGTAGGTCTAGCAAAGATTATATCAGATGTTGTACCAGAAAATGTTACAGAATACAGGAACTCTGTTCTTGCTGGCACCCTTGGTTACATGGATCCAGAGTATCAAAGAACTGGCACACTCAGACCAAAATCTGATCTGTATGCTTTTGGAATAATAATACTTNCATTACTAACTGCTCGTCGTCCTAATGGCCTTATAATGAAATTTGAGAATGCTATAAATTGTAATTCATTAGTGGATATACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327991" ref_strand="+" ref_description="SGN-U327991        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT2G19410.1 | Symbol: None | protein kinase family protein, contains Pfam profile: PF00069 Eukaryotic protein kinase domain | chr2:8411983-8416094 REVERSE | Aliases: F27F23.21, F27F23_21 (evalue: 2e-40, score=163) genbank/nr: gi|15224775|ref|NP_179531.1| protein kinase family [Arabidopsis thaliana] gi|7486244|pir||T01289 probable protein kinase At2g19410 [imported] - Arabidopsis thaliana gi|20197009|gb|AAM14871.1| putative protein kinase [Arabidopsis thaliana](evalue: 1e-38, score=163)">
      <seq>ttgataagtcagttcctgattggccgttgattgaagtagaggagctaggtaggatggcgctaaaatgctgcatgcttagatgccgagagagacctgacctcgatactgaagttcttccacttctgaaaagacttgctggatatgctgacatgcatagcaatgaagagaagaaccttatacacgcacctattcagtacttatgcccgatccttcaggaagtaatggaagatccacagatagcagctgatggctatacgtatgagcatagagcaataaagttatggtttgacagatacagtgtatcacccatgacaaaacagagactacagcacaagctagtcacgccaaaccacacattgcgacttgctatacaagagtggagatcaacattcaacaacattcagatagagaaaaactagtgattgctgtggatagttcaaggtagagtctctcatttacttatttctaattcattcacttgtggactggtttgaatgctgcataacatcatcttcaaccatacctccactgtacttccggtgcaaagggtcaaaacgttcatgatgatatcaagccaaaacaataactagagaaaccaagaaaagaaggaaaagtaataggactgttgtatacacaagtgacttcagaacaaagtcgtcaagtattatgtttgcatatatacattattaccgagtgtgcattagcaactgtaaatcttttgaagtattgtaaagctcctgattgtaggaaaccagtagaaaatatgtgcaaaatttaacataattctgagagtgagaccatacattctgattcatgattcttctggtaggagtttgaagtattgcctagagatgatttgatatgacatgacacaatttcagtttactgtggacatgaccttagataggaggaaatagattatgatagaaggttagtagatagtagagaattgactcgtttctcgttactagttagttggagtttatgtctttcgatttctgttactatttgttgtttattgcacttcgatgattctagtatttcgttgtagtttgtgctccttttttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="60074" stop="61851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60374" g_stop="60588" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60589" i_stop="60694" i_length="106">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60695" g_stop="61557" g_length="863"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="1078" r_length="863" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-U327991" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1078</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60374" e_stop="60588"/>
          <exon e_start="60695" e_stop="61557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATAAGTCAGTTCCTGATTGGCCGTTGATTGAAGTAGAGGAGCTAGGTAGGATGGCGCTAAAATGCTGCATGCTTAGATGCCGAGAGAGACCTGACCTCGATACTGAAGTTCTTCCACTTCTGAAAAGACTTGCTGGATATGCTGACATGCATAGCAATGAAGAGAAGAACCTTATACACGCACCTATTCAGTACTTATGCCCGATCCTTCAGGTGAGAACTGGAAATTCCAGAGGATGACCTAGTCATTACTAGTGTTATTTTTGTGCATGCATCTCATTCTGCTTTCTGCTCTTGTTATCATGCAACATCATTACAGGAAGTAATGGAAGATCCACAGATAGCAGCTGATGGCTATACGTATGAGCATAGAGCAATAAAGTTATGGTTTGACAGATACAGTGTATCACCCATGACAAAACAGAGACTACAGCACAAGCTAGTCACGCCAAACCACACATTGCGACTTGCTATACAAGAGTGGAGATCAACATTCAACAACATTCAGATAGAGAAAAACTAGTGATTGCTGTGGATAGTTCAAGGTAGAGTCTCTCATTTACTTATTTCTAATTCATTCACTTGTGGACTGGTTTGAATGCTGCATAACATCATCTTCAACCATACCTCCACTGTACTTCCGGTGCAAAGGGTCAAAACGTTCATGATGATATCAAGCCAAAACAATAACTAGAGAAACCAAGAAAAGAAGGAAAAGTAATAGGACTGTTGTATACACAAGTGACTTCAGAACAAAGTCGTCAAGTATTATGTTTGCATATATACATTATTACCGAGTGTGCATTAGCAACTGTAAATCTTTTGAAGTATTGTAAAGCTCCTGATTGTAGGAAACCAGTAGAAAATATGTGCAAAATTTAACATAATTCTGAGAGTGAGACCATACATTCTGATTCATGATTCTTCTGGTAGGAGTTTGAAGTATTGCCTAGAGATGATTTGATATGACATGACACAATTTCAGTTTACTGTGGACATGACCTTAGATAGGAGGAAATAGATTATGATAGAAGGTTAGTAGATAGTAGAGAATTGACTCGTTTCTCGTTACTAGTTAGTTGGAGTTTATGTCTTTCGATTTCTGTTACTATTTGTTGTTTATTGCACTTCGATGATTCTAGTATTTCGTTGTAGTTTGTGCTCCTTTTTTTTAGATTGCTT</genome_strand>
        <mrna_strand>TTGATAAGTCAGTTCCTGATTGGCCGTTGATTGAAGTAGAGGAGCTAGGTAGGATGGCGCTAAAATGCTGCATGCTTAGATGCCGAGAGAGACCTGACCTCGATACTGAAGTTCTTCCACTTCTGAAAAGACTTGCTGGATATGCTGACATGCATAGCAATGAAGAGAAGAACCTTATACACGCACCTATTCAGTACTTATGCCCGATCCTTCAG..........................................................................................................GAAGTAATGGAAGATCCACAGATAGCAGCTGATGGCTATACGTATGAGCATAGAGCAATAAAGTTATGGTTTGACAGATACAGTGTATCACCCATGACAAAACAGAGACTACAGCACAAGCTAGTCACGCCAAACCACACATTGCGACTTGCTATACAAGAGTGGAGATCAACATTCAACAACATTCAGATAGAGAAAAACTAGTGATTGCTGTGGATAGTTCAAGGTAGAGTCTCTCATTTACTTATTTCTAATTCATTCACTTGTGGACTGGTTTGAATGCTGCATAACATCATCTTCAACCATACCTCCACTGTACTTCCGGTGCAAAGGGTCAAAACGTTCATGATGATATCAAGCCAAAACAATAACTAGAGAAACCAAGAAAAGAAGGAAAAGTAATAGGACTGTTGTATACACAAGTGACTTCAGAACAAAGTCGTCAAGTATTATGTTTGCATATATACATTATTACCGAGTGTGCATTAGCAACTGTAAATCTTTTGAAGTATTGTAAAGCTCCTGATTGTAGGAAACCAGTAGAAAATATGTGCAAAATTTAACATAATTCTGAGAGTGAGACCATACATTCTGATTCATGATTCTTCTGGTAGGAGTTTGAAGTATTGCCTAGAGATGATTTGATATGACATGACACAATTTCAGTTTACTGTGGACATGACCTTAGATAGGAGGAAATAGATTATGATAGAAGGTTAGTAGATAGTAGAGAATTGACTCGTTTCTCGTTACTAGTTAGTTGGAGTTTATGTCTTTCGATTTCTGTTACTATTTGTTGTTTATTGCACTTCGATGATTCTAGTATTTCGTTGTAGTTTGTGCTCCTTTTTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316186" ref_strand="-" ref_description="SGN-U316186        Tomato 200607 #1 [30 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:3877813-3879540 REVERSE | Aliases: F14F18.180, F14F18_180(evalue: 8e-155, score=544) genbank/nr: gi|15239835|ref|NP_196762.1| expressed protein [Arabidopsis thaliana] gi|11280502|pir||T48560 hypothetical protein F14F18.180 - Arabidopsis thaliana gi|7573368|emb|CAB87674.1| putative protein [Arabidopsis thaliana] gi|16604352|gb|AAL24182.1| AT5g12010/F14F18_180 [Arabidopsis thaliana] gi|25141199|gb|AAN73294.1| At5g12010/F14F18_180 [Arabidopsis thaliana](evalue: 7e-153, score=544)">
      <seq>tgtaattgaagagagtgatatacgcaaccttacccctgtctttgagaaagaagaaaggttgtntaagatagtaaatcgtctaaaaagacaagtattggtagagaacacaacaatgaagaaatcaaaaggagaaaaagaacaatggcaacaaagagaaacttccaatttttttggctaaatttctttgataaagaattgagtccaattcataatgtcctaaacaatatgaaatacttgaaatggaaaagcaaatcttctatgaagatcaataataacttattctataacatgactcaaataaaccatgtaaaagaattacccctaatattcaagctctaaaacatgtaaactaaatcttgaatttccatatttcatcatagaaaactagtccctgagtgattatgatgtaatagtttgtgagcaatctgatctcttactttcatcgcgttcattgatctcacaacaacttccgggatcatttcatcatcaaccaaatcgaaccttaattcttgacgtaattcttcacctctaatctcacagatattgtgaagtgtacaacaagctccaagaacaacaggcaaatcttgaagtttcacttctgttcttttctttaaacaactccatcttgctttcaatctcataaacgcttctttggcaactctttgaacatcattcactttctcattaaaagcatgttgtgtccatgtaacattctgatgagtaaacggaactaaaatccaatccgttaatggaaatcctgaactcccaacaatgtaagtaccattcaagtttcctctgtttgctctttcataaagtatcgatttttccaagacttgatcatctgtcatcgaaccaggccatcctatacaaacatctgtgaaaatcccctttggatcaacaaccccttgtactgtaacggagtaagatgtcttctgattcctctcagtatgccttttgttgaagtaactcgcgacactttccttaggcgcgataattggtacatgtgtcgtgtacattgatccacctacattttctatcccggaaaggatttcaaactcgtgtttaatttcctccatcttaagttcatcaggccattgtatgaatttcgccattaacacccctcttatagctgtgcatacctcgagcacgagcttatgacaagtagatatacctaacccaaatcgcctagacacttctcggagtggctctcctgtagccaatctccaaatgcatacagctacacgttgacgaacaggtatcgccatacgtaacatcgtgtccttttttgtcactactgattctaattcagaacatataaaatcaaacgtagctttgcccatatgaaatgctttcttaaattcctcttcagggaaatcaggacggttacattgctcccaccacgcatttgatctgtttttcacccataacctcctctgctgtaatggctgctgagaataaccagaaccagagccagaaccagagataacctcaactagaccatcttcattctcattggcattttcacgaacacgtttagtgccagagacaacaccatgatcaaaatcaaatttttggttcttgtaatcaaaaagggtgtgattttcaactgattttgattctgggtgcgtttcgttttcgacacccagaaatttatttaggatttcctcaactgggttgtgatcaaaatcgttaatttttatctttttcgacatggattgatgatgatgatgatcagaagatggagaaagaaagtcgagttcttgaaaaaagtttagagaattgaaatcttcttgtgatggaaatgaagaagaaaaagaagtgatttccattcaaataatgaagcttttttttcttaattcttttaatctttttccaggtgtgaaagtatttgaagattttgtcaaatatgaaacaaagaaaagtgtgtgaacccccaagaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="67683" stop="54634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67383" g_stop="65441" g_length="1943"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1943" r_length="1943" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65440" i_stop="63945" i_length="1496">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63944" g_stop="63881" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1944" r_stop="2005" r_length="62" r_score="0.703"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-U316186" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>2007</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316186" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67383" e_stop="65441"/>
          <exon e_start="63944" e_stop="63881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATTGAAGAGAGTGATATACGCAACCTTACCCCTGTCTTTGAGAAAGAAGAAAGGTTGTTTAAGATAGTAAATCGTCTAAAAAGACAAGTATTGGTAGAGAACACAACAATGAAGAAATCAAAAGGAGAAAAAGAACAATGGCAACAAAGAGAAACTTCCAATTTTTTTGGCTAAATTTCTTTGATAAAGAATTGAGTCCAATTCATAATGTCCTAAACAATATGAAATACTTGAAATGGAAAAGCAAATCTTCTATGAAGATCAATAATAACTTATTCTATAACATGACTCAAATAAACCATGTAAAAGAATTACCCCTAATATTCAAGCTCTAAAACATGTAAACTAAATCTTGAATTTCCATATTTCATCATAGAAAACTAGTCCCTGAGTGATTATGATGTAATAGTTTGTGAGCAATCTGATCTCTTACTTTCATCGCGTTCATTGATCTCACAACAACTTCCGGGATCATTTCATCATCAACCAAATCGAACCTTAATTCTTGACGTAATTCTTCACCTCTAATCTCACAGATATTGTGAAGTGTACAACAAGCTCCAAGAACAACAGGCAAATCTTGAAGTTTCACTTCTGTTCTTTTCTTTAAACAACTCCATCTTGCTTTCAATCTCATAAACGCTTCTTTGGCAACTCTTTGAACATCATTCACTTTCTCATTAAAAGCATGTTGTGTCCATGTAACATTCTGATGAGTAAACGGAACTAAAATCCAATCCGTTAATGGAAATCCTGAACTCCCAACAATGTAAGTACCATTCAAGTTTCCTCTGTTTGCTCTTTCATAAAGTATCGATTTTTCCAAGACTTGATCATCTGTCATCGAACCAGGCCATCCTATACAAACATCTGTGAAAATCCCCTTTGGATCAACAACCCCTTGTACTGTAACGGAGTAAGATGTCTTCTGATTCCTCTCAGTATGCCTTTTGTTGAAGTAACTCGCGACACTTTCCTTAGGCGCGATAATTGGTACATGTGTCGTGTACATTGATCCACCTACATTTTCTATCCCGGAAAGGATTTCAAACTCGTGTTTAATTTCCTCCATCTTAAGTTCATCAGGCCATTGTATGAATTTCGCCATTAACACCCCTCTTATAGCTGTGCATACCTCGAGCACGAGCTTATGACAAGTAGATATACCTAACCCAAATCGCCTAGACACTTCTCGGAGTGGCTCTCCTGTAGCCAATCTCCAAATGCATACAGCTACACGTTGACGAACAGGTATCGCCATACGTAACATCGTGTCCTTTTTTGTCACTACTGATTCTATTTCAGAACATATAAAATCAAACGTAGCTTTGCCCATATGAAATGCTTTCTTAAATTCCTCTTCAGGGAAATCAGGACGGTTACATTGCTCCCACCACGCATTTGATCTGTTTTTCACCCATAACCTCCTCTGCTGTAATGGCTGCTGAGAATAACCAGAACCAGAGCCAGAACCAGAGATAACCTCAACTAGACCATCTTCATTCTCATTGGCATTTTCACGAACACGTTTAGTGCCAGAGACAACACCATGATCAAAATCAAATTTTTGGTTCTTGTAATCAAAAAGGGTGTGATTTTCAACTGATTTTGATTCTGGGTGCGTTTCGTTTTCGACACCCAGAAATTTATTTAGGATTTCCTCAACTGGGTTGTGATCAAAATCGTTAATTTTTATCTTTTTCGACATGGATTGATGATGATGATGATCAGAAGATGGAGAAAGAAAGTCGAGTTCTTGAAAAAAGTTTAGAGAATTGAAATCTTCTTGTGATGGAAATGAAGAAGAAAAAGAAGTGATTTCCATTCAAATAATGAAGCTTTTTTTTCTTAATTCTTTTAATCTTTTTCCAGGTGTGAAAGTATTTGAAGATTTTGTCAAATATGAAACAAAGAAAAGTGTGTGAACACACAAGAAGTAATGAATTGAAGAAAATTAAAAATGGAGTTTTTGAATATATAGAGAATTTTAATGCACGCGGTGAAAGGTGGGGGTGGGTGGGGTGGGGTGGGGGTTTTGTTGAGGGTGGTGTGGGGTGGGGGGCCAGGGGACGATGCGGGAGGGACATAGGGAGGGGGGGGGAGGGGGCCAGGGAGGACGGGGGGTGGCGGGTGTTGTATGGTGGGAAGGGGGGAGGGGCTGCCGAAACCGGATGAAGGGCATGAGAGCATAATCAGTGGAGAGGTAAGATGGTATTAGCGTTAGAGACGTTTTGTGTGCGTTACGGGGATTGTTAGGAGTTACTGGAAATCATAATAAGCCAAGATCTAATTTAAACTTAGACACTGGCCTCGAACAGTTAGAAGATATAGATATGGAACTATGCCCTAAAACAATGTGTGTCCCCAACGCCCAACATTGTGCACTACAACCTTACAATACCCTCAACATAGAACTTCATACGCGACTCATAAATCAGAAGCAACTGAAACACACATGACGAGATGCCCGTGGACGCACACATCAATACTACGCTTGCCAATACGATTAATGTCAGATGTGTACGTATGGACACTCTTGAAATTTCCCAATGAGTCTATTTTTCGTTTTCTGACCCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGAAGGGGAAGAGGAAGAGAGAAGGAAGAAGGAGGAAGGAAGGGGAGGGGGGAAGGAGGGAGAGGAGGAAGGAAGGGAGGGGGGGAGGGAGAGGGGGAGAAAGAAGAGGGGGGAGAGAGGGNGAGAGAAAGGGAAAGAGAAAAGAGAGGGGAAAGAAAGAGGAGAGAAAGGAGAGAGAAGAGAGAGAAGAAAGAGGAGAAGAAAAAAGAGAAGAGGAAAGGAGAAGGAAAAGAGAAGAAGGAGAGGAGAGAAGAAAAGGAGAAGAAAGAAAGAGAAGAGAAAAAAAAAGAAAAAAAAAAGGAAGAGAAAGNAGAAAAAAGAAGAAAGGAAGAGGAAAAGAAGAAGAGGAAGAGGGGGAGGGGAGAGAAAGAAGAGAAAAGAAGAGAGGAGGAAAAAAGGAAAAGGGGAAGAAGAGAAAAAAGGAAGGGGAAGAGAAAGGAAAAGAGAAGAGAGAGAAGGGAAGAAAAAAAAAGAGAGAGAAGAAGAAGAAGGAAAGAGNAAAAGAAAAGAGAAAGAGAAGAGGGAAGGAAGGAAAGGGGGAAAAGGGAAGGGAGAAAGAAGGAAGAGGAGAAAAAAANGGAAAGGAGGGAGGGAAGAGAAAAAGGGGAAAAAAAAGAAAGAANGGGAAGAAGGGGGAAGGAAGGAGAAGAAGGAGAGAGAAAAAAAGAGGGGGGGGGAGAGAGGAGGGAGGAGAAGGGGGAGAGAGAAGAAGGAAGAGAAGGAGGAGAGAAGGGAGAGAAAAAAAAAAGAAAAGAAAAAAAAAAAAGAAAGGAAGAAAAGAGAAAAAAAAAGAAAGAAAAAAAAGGAGGAAAGAAAAA</genome_strand>
        <mrna_strand>TGTAATTGAAGAGAGTGATATACGCAACCTTACCCCTGTCTTTGAGAAAGAAGAAAGGTTGTNTAAGATAGTAAATCGTCTAAAAAGACAAGTATTGGTAGAGAACACAACAATGAAGAAATCAAAAGGAGAAAAAGAACAATGGCAACAAAGAGAAACTTCCAATTTTTTTGGCTAAATTTCTTTGATAAAGAATTGAGTCCAATTCATAATGTCCTAAACAATATGAAATACTTGAAATGGAAAAGCAAATCTTCTATGAAGATCAATAATAACTTATTCTATAACATGACTCAAATAAACCATGTAAAAGAATTACCCCTAATATTCAAGCTCTAAAACATGTAAACTAAATCTTGAATTTCCATATTTCATCATAGAAAACTAGTCCCTGAGTGATTATGATGTAATAGTTTGTGAGCAATCTGATCTCTTACTTTCATCGCGTTCATTGATCTCACAACAACTTCCGGGATCATTTCATCATCAACCAAATCGAACCTTAATTCTTGACGTAATTCTTCACCTCTAATCTCACAGATATTGTGAAGTGTACAACAAGCTCCAAGAACAACAGGCAAATCTTGAAGTTTCACTTCTGTTCTTTTCTTTAAACAACTCCATCTTGCTTTCAATCTCATAAACGCTTCTTTGGCAACTCTTTGAACATCATTCACTTTCTCATTAAAAGCATGTTGTGTCCATGTAACATTCTGATGAGTAAACGGAACTAAAATCCAATCCGTTAATGGAAATCCTGAACTCCCAACAATGTAAGTACCATTCAAGTTTCCTCTGTTTGCTCTTTCATAAAGTATCGATTTTTCCAAGACTTGATCATCTGTCATCGAACCAGGCCATCCTATACAAACATCTGTGAAAATCCCCTTTGGATCAACAACCCCTTGTACTGTAACGGAGTAAGATGTCTTCTGATTCCTCTCAGTATGCCTTTTGTTGAAGTAACTCGCGACACTTTCCTTAGGCGCGATAATTGGTACATGTGTCGTGTACATTGATCCACCTACATTTTCTATCCCGGAAAGGATTTCAAACTCGTGTTTAATTTCCTCCATCTTAAGTTCATCAGGCCATTGTATGAATTTCGCCATTAACACCCCTCTTATAGCTGTGCATACCTCGAGCACGAGCTTATGACAAGTAGATATACCTAACCCAAATCGCCTAGACACTTCTCGGAGTGGCTCTCCTGTAGCCAATCTCCAAATGCATACAGCTACACGTTGACGAACAGGTATCGCCATACGTAACATCGTGTCCTTTTTTGTCACTACTGATTCTAATTCAGAACATATAAAATCAAACGTAGCTTTGCCCATATGAAATGCTTTCTTAAATTCCTCTTCAGGGAAATCAGGACGGTTACATTGCTCCCACCACGCATTTGATCTGTTTTTCACCCATAACCTCCTCTGCTGTAATGGCTGCTGAGAATAACCAGAACCAGAGCCAGAACCAGAGATAACCTCAACTAGACCATCTTCATTCTCATTGGCATTTTCACGAACACGTTTAGTGCCAGAGACAACACCATGATCAAAATCAAATTTTTGGTTCTTGTAATCAAAAAGGGTGTGATTTTCAACTGATTTTGATTCTGGGTGCGTTTCGTTTTCGACACCCAGAAATTTATTTAGGATTTCCTCAACTGGGTTGTGATCAAAATCGTTAATTTTTATCTTTTTCGACATGGATTGATGATGATGATGATCAGAAGATGGAGAAAGAAAGTCGAGTTCTTGAAAAAAGTTTAGAGAATTGAAATCTTCTTGTGATGGAAATGAAGAAGAAAAAGAAGTGATTTCCATTCAAATAATGAAGCTTTTTTTTCTTAATTCTTTTAATCTTTTTCCAGGTGTGAAAGTATTTGAAGATTTTGTCAAATATGAAACAAAGAAAAGTGTGTGAACCCCCAAGAAGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA-AAA-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316887" ref_strand="+" ref_description="SGN-U316887        Tomato 200607 #1 [24 ESTs aligned] arabidopsis/peptide: AT4G33080.2 | Symbol: None | similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:At2g19400.1); similar to protein kinase [Raphanus sativus] (GB:BAC76895.1); similar to putative serine/threonine kinase 38 [Oryza sativa (japonica cultivar-group)] (GB:BAD72247.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:NP_914515.1); similar to protein kinase [Spinacia oleracea] (GB:CAA82991.1); contains InterPro domain Serine/threonine protein kinase, active site (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase (InterPro:IPR002290); contains InterPro domain Protein kinase (InterPro:IPR000719) | chr4:15959965-15963980 FORWARD | Aliases: None (evalue: 1e-87, score=320) genbank/nr: gi|34906336|ref|NP_914515.1| unnamed protein product [Oryza sativa (japonica cultivar-group)] gi|9558490|dbj|BAB03409.1| unnamed protein product [Oryza sativa (japonica cultivar-group)](evalue: 4e-88, score=327)">
      <seq>ctcgtgccgtccaattctatcttcatttctcctttttaacggattttcgtattgaaaagaaaaataataatcgaatttctcattcttcttcttcttcatagtcttcgccgattcgctcaatcgtcgccctgataaaaaggaagacgattgatcgaagatttttttttaaattatggcgaagaacagagaggaggaagagcaacaacaacatataatggtagcgttaacggaggaggaagaggaagaattggaggagcaattaggttctagtttgactctagaacgagtcgctgctgcgaagaaattgatcgaagatcattataaatcgcatatgaaactaatccaggatcgtaaacaaaggcgttcactgctagaaaggaaattggaaggctctggtgtaccaaaagaggaacaaatgaaccttctaaaggaattggagagaaaagagacagagtatatccgactaaagcgtcacaagatttctgtcgatgattttgagcttttgacaatcattgggagaggagcttttggagaggtcagattgtgccgggataaagtatctaaaaatatatatgcaatgaaaaaattgaagaaggctgaaatgctaagtagagggcaggttgaacatgttagggccgaaaggaatttgcttgctgaagtagcgagccactttattgtaaaacttttttattctttccaagatgctgactacttgtatctggtaatggaatatctgcctggtggtgatatgatgacattgctgatcagggaggagacattaactgagacagtcgcaagattttacattgctcaaagtgttttggccatagagtctattcataagcataactacattcacagggatataaaacctgacaatcttcttttggacaaaaatggtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73966" stop="78442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74263" g_stop="74624" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76659" g_stop="76833" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="535" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77522" g_stop="77605" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="619" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77606" i_stop="77746" i_length="141">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77747" g_stop="77988" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="861" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77989" i_stop="78098" i_length="110">
            <donor d_prob="0.129" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78099" g_stop="78142" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="862" r_stop="905" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-U316887" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74263" e_stop="74624"/>
          <exon e_start="76659" e_stop="76833"/>
          <exon e_start="77522" e_stop="77605"/>
          <exon e_start="77747" e_stop="77988"/>
          <exon e_start="78099" e_stop="78142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTCCGTCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAGGTATTTTATTTTTCTCTTCTAATTATATGATTTTTTTTGAAATTTTTTGGATTAGGTGAATGCGATTTTGGTTTTTTTCTGGTGTATTTTGGATTTGAATTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATCGGATAAAAATTTTTCATAGTGTAGCTCGATCGTTTCAATGTGGTAAAAATGATAGGATAATGAATTTTCATCATTCTGTTAATGCAAATTTTGGATTTGAACTGGAAATGTGTGCAAAGTGTAGCTCGATCGTTTCAACGTGGTAAAAATGATGGGATAATGAATTTTCATCGTTATGTAAAATGCACATTTTCGATTTGAATTGGGAATGTCTGCAAAGTGTAGCTCGATCTTCTCAATGTGGTATAGAGGTTGACATTTTGGTAAAAATGATGGGATATTGAATATTTTGGTTATGCGTTTATTTCGGATGTATTTGGGATGTAACAAGTGATATTTAGGTAACTTTAGATTCTGAAATGGAAATGTATGTGATATGTAGCTTGCTTGATTATCTCAATGTGGTATGGGGAGGTTGACACAGCTTGGTAAATATGATTGGATTTTGAATTTTCGTTTAGGCGTTTATATCGGAGTTACCTGGGATGCAACAAGTGATTGTTAGGTAACTTTAGATTTTGAATTGGAAATGTGTGCAGTCTGTATCTTGATCATCTCAATGTGGCACAGAGAGGTTGACAGCTAGGTTAAAAAGATAGGATTTTGAATCTTCATTTAGGTGTTTAATTCGGATTTCGTGTTATATGTATATGCATATATGCAAGGTTTATTTGGGATGCAACATGTGAGTAGCTAGTACCAATGTAGTAGGTTGATAGCCAATATAAAAATTATCAATTCATGAATTCATATGTCGAATATTTATTGGAATTTTTGTGTCTATGATTTTTCGGAATGAAACATTATATTTTAGAAAAGTTTTTATGTGGAATGTGTAGTTGATATCAATGTATTTGGATTTTCATGTTTATATACACACACATTCGTTTGGATATGCAAACTTATGCGATTGGTTTAAAAGACAATGTAACTCCTAATTCTTCTTTATTTTCAAGACAAAATCTACTTCTAAGCTGACTAGAAAGAGAGTCACTCTCCCCTTTTGTCTTTAGAAAGCTTCTCCCTTGAAATTTCCTTTTTTTCTATCAAGAAATAAAAGAAAGCAACCTTGATGATTGAAGGTAGTGAACACGGACAAGATATATCTAAAATCACATGGACCTACTTTGTCTTGAAAGGACCTACAATCTCTCAAAATTCTTGTCGGTTTAGTAAAACATAGGACATCGTGGAAGAAACAAGTCCATGTAGGAGACAACAGGTAGTTTGGATTAAGGCTCGCTTATGAGATTGTGCTTATATTAGGTCCAGTGTAGCTAGCAGTTTTTTTTGATCTGTTAGTATTTGCAGGTCAATAGAACCTTTAGAGAACTCCGAACTAATGAATATTAGAATGAAACAGGTTCTAATGGAGGAATTGGATAGTGAGGATTCAATATTAACTCGTACTAGCTTGGTATTGAGGCCAAGTTGTTAAGATTTTGTACTTCACCACTTCTGAAATGAAAGGATCTTTTATGGTTTCTATCACTGAAGAGGCATCAATCTTTTAGAGCTACAAGTTTCGATCTCCTCCAGTGTTGGATAAAGTCATGATTTTTCTTTATAAGGACTAGGCTAAGTGGCTAACATATGCTTAGGGGTTGCCTTTGATCAACAAAGGTCTCGGAGAGATGCATGTAGCTAGTGTCTTATCTTGTTTACTTGGTTGTTATTGTAATGGAGCATCTCTTGTCGTCCAAATTGTACTACTCTATATCTTGAAATAAAAAATACTGTTGTAGACGAGTTATGTCAAATGCACTTTTTAGGCTCATATACATATAAGTTGAGCCAATCACACTAAAGGAGAGTGATATTAGATGGAATTTTGACAATTCTTTTCTGTATTTCCTCATGTATTATCGTATATAAACTGTAGGCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAGGTTTGAGATTCTTTCTCTTAAGATTGAAAAATATTTCATTCTTCTGGTATTATGTCCCCCCCACCCCACCCCCACGACCCTATGTTTTTTGTTAGTTGAACTGTTCAACCTTTAGGACTGAATTATGTACTAGGAAATAAATAGAACTTTTATAGAGTTGGGTTCTGTGTCATCCGCTTCATTGATCATATGCTTAACCAGAAGGAGCATGTCTAATGAATTTCGTCCATCCTCATGCAAAATCCATAATCATATTCTACATAAGATTTTTAAATTTATTTAGACATTATATAATTGGAGTCACTCATGATGCTTTTGCTTTTATATCTCTCAATATTCTTATGAGCTCCGTGTAATGATAATTTCTGTCATTGGAGTGCTCTAAGTTTGAAAATCTTAATTGCTTTCAAAGGCCTCTTTAGTGTTCTAGCAGATAAATTTCTTTGTTCCTTTTATTGGACATTAAGGGCAGCCTGATGCATTAAACTGTAGCTATGCACGGGTCTGGGGAGAAATATGCCATATTGGCTATTGCATCTATTGTACATAACCTCATTTTATATTTCTGCAAGAGGTTGTTTCCTCAGCTCAAACCGATGACCTCATGGTCACAAGGAATGTGTTTCCTGTTTACCAGCACTTACTCCTGATAATAAGTTGTTGATTTTTATGTATATCTACTTTGCAGGTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAGGTGAGACCAAATCCTTCCTAACATGCTTAAGGGGCCAATTGTTATCCATCTTCTTTGCTAAATAAGATTTATTCCTACTACTATGCTCTACTGATTAAGAAGTGATCTGATTGTCTTTCGTACCATCACTTTACATTACAGGTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTTTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTGCCTGGTGGTGATATGATGACATTGCTGATCAGGGAGGAGACATTAACTGAGACAGTCGCAAGATTTTACATTGCTCAAAGTGTTTTGGCCATAGAGTCTATTCATAAGCATAACTACATTCACCGGTAGGTATTAATCAGTATTTGGTAAAGAGTAATGGTATACCCTGGAGACTTCTATGTATGATTTGAAATGATCTTAATGATTTATGTCTTTTACGTAACGTTTTGTGCAGGGATATAAAACCTGACAATCTTCTTTTGGACAAAAATGGTCACA</genome_strand>
        <mrna_strand>CTCGTGCCGTCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATTCTTCTTCTTCTTCATAGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTT--TTAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATTGTGCCGGGATAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAG.............................................................................................................................................GTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTTTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTGCCTGGTGGTGATATGATGACATTGCTGATCAGGGAGGAGACATTAACTGAGACAGTCGCAAGATTTTACATTGCTCAAAGTGTTTTGGCCATAGAGTCTATTCATAAGCATAACTACATTCACAG..............................................................................................................GGATATAAAACCTGACAATCTTCTTTTGGACAAAAATGGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325751" ref_strand="+" ref_description="SGN-U325751        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT4G33080.1 | Symbol: None | protein kinase, putative, contains protein kinase domain, Pfam:PF00069 | chr4:15960149-15964299 FORWARD | Aliases: F4I10.10, F4I10_10 (evalue: 3e-101, score=365) genbank/nr: gi|34906336|ref|NP_914515.1| unnamed protein product [Oryza sativa (japonica cultivar-group)] gi|9558490|dbj|BAB03409.1| unnamed protein product [Oryza sativa (japonica cultivar-group)](evalue: 1e-101, score=373)">
      <seq>gtctgattttggtctatgcaagccccttgactgttcgaatttatctcctataaatgaaaatgaagtgattgatggtgaggaaaaaggatctgctaacaagtggaatagctcccttgaacaaatgcagcattggcaaataaacaggagaaaattagcattttcaacagtgggcactcctgactatattgctcctgaggttttactgaagaaaggctatggagtggaatgtgattggtggtcacttggcgccatcatgtatgagatgctcgttggttatccccctttctactccgaagacccaataacaacatgtagaaagatagttcattggagaaatcacataaaatttccagaggaagcaagattaactcctgaagccaaagacctgatctgtaagttgctttgtgatgctgaaaatcgtcttggttgtcgaggagcagagcaaataaaggctcacccctggttcaaagacataaagtgggataaactttataacatggaggcagcatataagccagaagtcaatgatgctcttgacactcaaaatttcatgaagtttgatgaggcaaatcaagcaccagcaaaaaatagttcaggacccaatcgaaagaagcgtctgattcccgaagatttaagttttgttggctatacctacaagaattttgaggctgtgaagggattaagacattcttcaggtgactctgcagtggatatctcaggcaagtgttcaatcgatgacaatgaaatgcttgtcctcgctgctgcatcagcagatactgtaactctgtgatgagcatccaagttctacaacaaaactaaatgatcaacatgccatttctatggtttttcctggaggtaataacattgagtgttcaattcgagttccgaccattgctcctttgtccacaaaagcagattgccatttacaacactttaaaatgtaaaaagtgacaaatacaggatctctgggtaggtttcatgcagctatcactaggagttttttcttttttttctttttcaaacttgaaaattgtgtatacaaacattaagcatttaacttgactgcccttttaggaagagctaagaatgacttaaaatcatatctgtctagaacccttttgagttcttactcccagattttgtacattcacacagctgtaccaagaaaatggggaaatcaaatagtatgctttcttctaaatcagtttctgtatctttttccagcagccggaggtgtcaaatgagcgagctgaattataatggaggcttccagcttatgaaggctggatccatacaggattagctatatctatgtgacttacatttatattgatggggtatagtagaacgataaccattacaggaacaacggcataccaagtggtgtaatcccacatgtcgaatctaaggagggtaggatttacatagaccttacccttagctttgtgggtaagagaggttgtttctgataaatccatgatgaatcgataggtctctaaaatgatctcataaggagaaatgggatcttaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="77850" stop="84741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78150" g_stop="78303" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78304" i_stop="79423" i_length="1120">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79424" g_stop="79503" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="234" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79504" i_stop="79691" i_length="188">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79692" g_stop="79776" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="319" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79777" i_stop="80104" i_length="328">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80105" g_stop="80236" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="451" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80237" i_stop="80309" i_length="73">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80310" g_stop="80423" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="565" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80424" i_stop="80863" i_length="440">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80864" g_stop="80908" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="610" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80909" i_stop="81000" i_length="92">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81001" g_stop="81085" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="695" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81086" i_stop="83605" i_length="2520">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="83606" g_stop="84441" g_length="836"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="1533" r_length="838" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-U325751" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1531</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78150" e_stop="78303"/>
          <exon e_start="79424" e_stop="79503"/>
          <exon e_start="79692" e_stop="79776"/>
          <exon e_start="80105" e_stop="80236"/>
          <exon e_start="80310" e_stop="80423"/>
          <exon e_start="80864" e_stop="80908"/>
          <exon e_start="81001" e_stop="81085"/>
          <exon e_start="83606" e_stop="84441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGATTTTGGTCTATGCAAGCCCCTTGACTGTTCGAATTTATCTCCTATAAATGAAAATGAAGTGATTGATGGTGAGGAAAAGGGATCTGCTAACAAGTGGAATAGCTCCCTTGAACAAATGCAGCATTGGCAAATAAACAGGAGAAAATTAGTAAGTAGAACATTATTAAATATTAACAGAAACACAGCTTATCTCATTACTTATAAACTTAATCCAGAATCCTTATTTTGGTTGATTTTTCAAGGATCATAGATATGGAAAAGAAAAACTAAAAATTGGAAGAGAACTACTCCCTTCATTTCAATTTGTTTGTCTGGTTTTGATTTGACGCGAAACTTAAGAAAGCAAAAAAGACTTTTGAATCTTGTAACATTAAATTAAATATATATTGCATGAACCAAAATATCATTTAATCTTAGTCTTAAACATGTCACATATAAAGTTGAAACTACAGAGTTGCCAAAAAGAAAAGGAAAAATGCATTCTTTTCTGAAACGGACTAAAAAGGAAAGCAAGAAAAACAAATTGAAATGGAGGGAGTAATATCTAGTACCAGAACAATTTGTTTCGGGAGAGTAACATACTTATCTCCTTAGTGTTGGGACCTGGCGTATTGAATTGTCTGCTTTAGATAAGCTTATTCATATGGATCTAAAAAAATGCATAAATAATATTGCTTTTTTGATACGTAGCTCTAGCTGATACTTTACCGCAGAAATTTTAGCAAAGCAAGTACATGATTATGTTGAATTTAGCACTGAGTCATTGCTTTCCAAAAGTATGAAGTTTTGTTAAAACGAAAATCTTCACACAGCATAGACATTTGAAAAAACTGAAGTACTTAGATGAACTTTATTAAGAATGGGAGATAAATTGTAGGGTGGAATAACTAGTGTTGTGTAATACTCTTTATATTCTGAAGTAACAATTGTTGGTCCTGTAAAGACTAGACTACCTTTTCACCCAATAGCTCCCCCTGCCCAAAGCTGGTTTATAATGTCAATGTCATGCATGCCAAGTTTGTTACGAGTCTACTTCACTCATTTATCATGCAAAGGCTTAGTGAGCAAGTCAACAACTTCGTTTTCAGATACCTCTTATGCTTTTTGAATGACACATTGGAACTTTATCAAAATGTGACTGCCAACCAGTATGTACCTAGCTTCACATGAGTAATGGAAACGAACTAGAAATATCATTTACTATTCCAAGAAATGATATTTTGTTGATTAGTTATTGGAACCTGTAATATAACCTGTTGCTATGGCAGGCATTTTCAACAGTGGGCACTCCTGACTATATTGCTCCTGAGGTTTTACTGAAGAAAGGCTATGGAGTGGAATGTGATTGGTTAGCTTTCTTATTCGTGATGAACATGGATTTTAATTGACTGATGTTTTAAAGTTTTGATTGCCTTACTTCCAAAGATTAAACATGACTTTCACTTATGGTTCTTTCTTTTAGGTATGATCACCTTGAATAGAGAAAGTAAAGTTAATAGACTTAATCCATTATCCTCTTTTCTTTGCTTCATTCAGGTGGTCACTTGGCGCCATCATGTATGAGATGCTCGTTGGTTATCCCCCTTTCTACTCCGAAGACCCAATAACAACATGTAGAAAGGTATAGTGGTCTACACAAGTGTGTGAAAATTCATTAAGCAGCATTAACAACAACAGCAACATCAACATATAGGTGGGGTTTGGGGAGGATAGAGTGTACGCATACATTACCTCTACCTCGTAGAGATAGAGAGGCACGACGAAATTTAAAACTTTAGGAAGCAAATCTACTTTCTCCTGTTCAACATTGATATTATTTATCCTTTTTGTTTAGTTAACAATCAACGTATCTATGCTTGTGCTACTGTTCCGTCTTATGACAGTCCATTCACGATACTTATGTGGCATGATTCAAATGCTATGTTTTGACACTTGTTCTGGTTCTATAGATAGTTCATTGGAGAAATCACATAAAATTTCCAGAGGAAGCAAGATTAACTCCTGAAGCCAAAGACCTGATCTGTAAGTTGCTTTGTGATGCTGAAAATCGTCTTGGTTGTCGAGGAGCAGAGCAAATAAAGGTTTGTGTTACCATAATAGTCTTATTTTTGGATCAATTACAGATTCTTATGCTTTATTCATCAATATAATCAGGCTCACCCCTGGTTCAAAGACATAAAGTGGGATAAACTTTATAACATGGAGGCAGCATATAAGCCAGAAGTCAATGATGCTCTTGACACTCAAAATTTCATGAAGTTTGATGAGGTAAATTACAATTTATATCCTATCCCGTTTCTGTCTTCTTTTCCAAATTTTAGAGGATGTTTATGAGAAGTGATTATTCATCTTCACAATTTAATCGTGACACTATGTTTCGCTACTACATAAGCTACCTTAGTGGTATGTGTGATCAAGAGTTATCACTAAAGATGAGGCTACATCACACCCCTCAGGGTGCTGCTCTTCCCTAGACGGGATATTTTGTGCACCAGGCTGCCGTTTTACTAAAGATGAGCCTATGGTACCAATGAACAACGACTGCGATGACTTGATTTTAGTTTCTTTATCTTTATATTTTGTATTTTTCATTTAATACTTAAGCTTTGTTTTGGATGATCATTTTGATATTCATGTTTAACTGTTGTTACCAACAAAACTTAGTTGAGGATTCTTTCGGACTGATGTTCGATTGGAACTTGCTGCAGGCAAATCAAGCACCAGCAAAAAATAGTTCAGGACCCAATCGAAAGGTGAGTTTTCGTTTGCTACAATGAGTAAAGAGTCCTATCAGAGCAATAACGCCATGCTTAAGTAGCTGTTTTCTGTTGTAATATTTTGGCAGAAGCGTCTGATTCCCGAAGATTTAAGTTTTGTTGGCTATACCTACAAGAATTTTGAGGCTGTGAAGGGATTAAGACATTCTTCAGGTATGGTGACTTCCATATACTCTCAGACTAATAGTTGTGTCATCTTCTTTTGAAAGGGAGCTCGTGTTGAATGCTCTGTCATCTACGTTACTTCCTCCGTTTCAAAAAAGAATTTCCCTATTTTCTTTTTAGTTTGATTAAAAAAGAATGACCTCTTTCCTTTTTTGACAACACTTTAACTTTAACTTTCCACGCGGCATGTTTAAGACCACAAAATTAAAGGGCATTTTGATGCATTTGACGTAACTTTAATTTAGAACCACAAGATTAAAAAAAAAAACTTTTCTTAAACTCCGTTCTAAGTCAAACTAGGTCATTCTTTTTTAAACGGATGGAGTAATTCTTATGCATTCTGTGACATGTATAATGTATACTAGTTTCTGGACACGTTCGCACGTATGTCCAATACAAGTAGTTCATACAAACTAAATCATATTAAAAATATATTGTAATAAATAATAGAATAAAGTGAAAAAGTACAAGCTAAAATAGATGAATAGTTGGTTTATATTCAAATGATTTTTTTTGTTGAACAATATTAGATGATTAAATATTATTTGAAACTACAAAATTCAACAATTAAATTTATCTAGATAGGTAAAATGTATAATGAATTATATATATTTTCAGCAACATTTAATGTATTGATATATTTACATGATACTTTTTCAGAAGTAATGTTTTTGATGTGTATTCCATTCGTTGTTTTGATTACCGATTTCAACGATTAGAGTAATTTCATTCATCCGTTTACAATTATATAATTTAAAAAACATTAATAAACATATATCACTAAAATAATATATATGAATACCTATTCTTTTTCATTTATCCACTTCTTTTTTTTACCAACTTCACAAATTCTCAAAAAATTAAAGTTTCAAACAACTTCAAGCTAAGCAAAGAGTTAAAGCTAATGGTATCTCTAACACTTCTATATCAATACATCCAATTGATTTTAACTCATAAATATGAATATAAGAAACATTGATAATTTATAAAACTTAAAACTCATAAAATATTATATAAACGAGAATAATATATATTTTACGAACGCGTTCGTAAAAAATAACAAAGCTGCTTCCCCTAATGGAGAGGGTTGTACATATTCTTGATTTATGAATTCATTTATAAATAGATCATTGAGCATAATTTCAAGGAATAGATAAGATCATTCATTATCAATTAAATTAGGTAACTAAAGAAAATCAAAAGTTCAATTATTGGAGACGAAAAGACTTTTCCAAACAACAACTACGTATAACCATTGTTATGAGATGTATACATTGCAAGTACAAAAAAACTAAGAAAAAGAATGAACAAATTACACAAGAAAATATTTTGTTGAGTAAACATTATATTCTAATTAATTACTACATATAAGATAATATGCTATAGTAAGTATCGATAAATGAACAAATATAACAGCTAGAAGCTTCAATCAAACTAATAAATGTGAAAAGATTGTATTCTAATTAATATTGAGGAAATTTAATCTATAATAATTACTGGCAGATGAACCATCTAGTACTTATCCGGTTCAATGCATAAGATTATTAATAAATTTTATATTTTAAAATTATAGTTGTTAGGGCTTTTAATGTTATCTTTATATAATTAATTAAAATATTATTATTTAATTAAATTTATATTTAGTGTAGCAATAAAATGACAATCCAACTTTTCAATTTGAAGTTTCTCACTTATAATAATATATGACGATATGATAAGCACTTGAATGAATTCTGAGCTTCTGTATAATTAATAAAACAGAAGTACCTCTAATTTTGCTGGTGATGAATAATAATGCTCACATGTGTCAATGAATTTCTTGAATCGATGGATTGTCAAAAACAAGCTCTTTACCTAATTCTGAGCTTCTGTATAATTAATAAAACAGAAGTACCTCTAATTTTGCTGGTGATGAATAATAATGCTCACATGTGTCAATGAATTTCTTGAATCGATGGATTGTCAAAAACAAGCTCTTTACCTCCCAAAGGTCTTTTCCGTGTACACTCCACGCTTTAAGACCCCACTTGTGCGATTATATTGGGTGTATTGTTGTGCATGTGTTAATGTACATTTTAATGCCTTGATCGAACTTAAGACATAAACGTATGCCATATATGACATGAATAAACGTTTAATCACTTGCAGCATTATTAGATTTCTGTGTACCAGCATGAATTTCTTGTGGATGATTGGTCTTGCACTCAAACCTTGACATTGTATGTACTTGCTGGAAACAGAAAACTTTGGTATCTTGCTGATTGTGTTATCTTTCATTATGATGTTCTGTATGTGCTGGTTTTCCGAATGGTTGTCTATAGGACATCTCGATGCACAAATCATCCCATGTTCGCAAGGTCAGGAAGGGTGTAAACAGCCTAACCTAATGCAAGCATTACTGACAACTTTACCGTTGCTCCAAGACTCCCTTAAACTGTTTCAAGACCCTACTTTGATTTCTCTCCTCTCGTAGCATGTATAATAAAAAGGGCCATTATATCCTTGTAGGTGATTCTGCAGTGGATATCTCAGGCAAGTGTTCAATCGATGACAATGAAATGCTTGTCCTCGCTGCTGCATCAGCAGATACTGTAACTCTCTGATGAGCATCCAAGTTCTACAACAAAACTAGACAATCAACATGCCATTTTTATGGTTTTTCCTGGAGGTAATAACATTGAGTGTTCAATTCGAGTTCCGACCATTGCTCCTTTGTCCACAAAAGCAGATTGCCATTTACAACACTTTAAAATGTAAAAAGTGACAAATACAGGATCTCTGGGTAGGTTTCATGCAGCTATCACTAGGAGTTTTTT-TCTTTTTTCTTTTTCAAACTTGAAAATTGTGTATACAAACATTAAGCATTTAACTTGACTACCCTTTTAGGAAGAGCTAAGAATGACTT-AAATCATATCTGTCTAGAACCCTTTTGAGTTCTTACTCCCAGATTTTGTACATTCACACAGCTGTACCAAGAAAATGGGGAAATCAAATAGTATGCTTTCTTCTAAATCAGTTTCTGTATCTTTTTCCAACAGCCAGAGGTGTCAAATGAGCGAGCTGAATTATAATGGAGGCTTCCAGCTTATGAAGGCTGGTTCCATACAGGATTAGCTATATCTATGTGACTTACATTTATATTGATGGGGTATAGTATAACGATAACCATTACAGGAACAACGGCATACCAAGTGGTGTAATCCCACATGTCGAATCTAAGGAGGGTAGGATTTACATAGACCTTACCCTTAGCTTTGTGGGTAAGAGAGGTTGTTTCTGATAGATCCTTGATGAGTTGATAGGTCTCTAAAATGATCTCATAAGGAGAAATGGGATCTTAAAAG</genome_strand>
        <mrna_strand>GTCTGATTTTGGTCTATGCAAGCCCCTTGACTGTTCGAATTTATCTCCTATAAATGAAAATGAAGTGATTGATGGTGAGGAAAAAGGATCTGCTAACAAGTGGAATAGCTCCCTTGAACAAATGCAGCATTGGCAAATAAACAGGAGAAAATTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTCAACAGTGGGCACTCCTGACTATATTGCTCCTGAGGTTTTACTGAAGAAAGGCTATGGAGTGGAATGTGATTG............................................................................................................................................................................................GTGGTCACTTGGCGCCATCATGTATGAGATGCTCGTTGGTTATCCCCCTTTCTACTCCGAAGACCCAATAACAACATGTAGAAAG........................................................................................................................................................................................................................................................................................................................................ATAGTTCATTGGAGAAATCACATAAAATTTCCAGAGGAAGCAAGATTAACTCCTGAAGCCAAAGACCTGATCTGTAAGTTGCTTTGTGATGCTGAAAATCGTCTTGGTTGTCGAGGAGCAGAGCAAATAAAG.........................................................................GCTCACCCCTGGTTCAAAGACATAAAGTGGGATAAACTTTATAACATGGAGGCAGCATATAAGCCAGAAGTCAATGATGCTCTTGACACTCAAAATTTCATGAAGTTTGATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATCAAGCACCAGCAAAAAATAGTTCAGGACCCAATCGAAAG............................................................................................AAGCGTCTGATTCCCGAAGATTTAAGTTTTGTTGGCTATACCTACAAGAATTTTGAGGCTGTGAAGGGATTAAGACATTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCTGCAGTGGATATCTCAGGCAAGTGTTCAATCGATGACAATGAAATGCTTGTCCTCGCTGCTGCATCAGCAGATACTGTAACTCTGTGATGAGCATCCAAGTTCTACAACAAAACTAAATGATCAACATGCCATTTCTATGGTTTTTCCTGGAGGTAATAACATTGAGTGTTCAATTCGAGTTCCGACCATTGCTCCTTTGTCCACAAAAGCAGATTGCCATTTACAACACTTTAAAATGTAAAAAGTGACAAATACAGGATCTCTGGGTAGGTTTCATGCAGCTATCACTAGGAGTTTTTTCTTTTTTTTCTTTTTCAAACTTGAAAATTGTGTATACAAACATTAAGCATTTAACTTGACTGCCCTTTTAGGAAGAGCTAAGAATGACTTAAAATCATATCTGTCTAGAACCCTTTTGAGTTCTTACTCCCAGATTTTGTACATTCACACAGCTGTACCAAGAAAATGGGGAAATCAAATAGTATGCTTTCTTCTAAATCAGTTTCTGTATCTTTTTCCAGCAGCCGGAGGTGTCAAATGAGCGAGCTGAATTATAATGGAGGCTTCCAGCTTATGAAGGCTGGATCCATACAGGATTAGCTATATCTATGTGACTTACATTTATATTGATGGGGTATAGTAGAACGATAACCATTACAGGAACAACGGCATACCAAGTGGTGTAATCCCACATGTCGAATCTAAGGAGGGTAGGATTTACATAGACCTTACCCTTAGCTTTGTGGGTAAGAGAGGTTGTTTCTGATAAATCCATGATGAATCGATAGGTCTCTAAAATGATCTCATAAGGAGAAATGGGATCTTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316934" ref_strand="+" ref_description="SGN-U316934        Tomato 200607 #1 [24 ESTs aligned] arabidopsis/peptide: | Symbol: None | mitogen-activated protein kinase kinase (MAPKK) (MKK2), identical to MAP kinase kinase 2 (Arabidopsis thaliana) gi:3219267:dbj:BAA28828; mitogen-activated protein kinase kinase (MAPKK) family, PMID:12119167 | chr4:14593045-14595275 REVERSE | Aliases: F27B13.50, F27B13_50(evalue: 7e-137, score=484) genbank/nr: gi|9843771|emb|CAA04261.2| MAP kinase kinase [Lycopersicon esculentum](evalue: 0, score=702)">
      <seq>ctgctattatttgcaagacttctacatagagtctttcagttgacccagctaagcagaaatgcccctaagctccccaattttttccaacatatattttttttttcaaaaaaaataatcatataggagtgaacttttaactagaatacaaaaaactcagttgcctggaagcaatttcatctttgatctttcaagatttctataaaagagtgaactttaagcagaattagcaaaaccccatttgcctgaaagcaactttcattttgggtgttcaagatttcaataaaaaaaaagtgatttttaagaagaattcaagatttcaataaaaaagtgatttttaagaagaattcaagaacccaagtttcccaagaagcaatttttactgtgattttacaagatttagctatgaagaaaggatcttttgcacctaatcttaaactctctcttcctcctcctgatgaagttgctctctccaaattcctgactgaatcaggaacatttaaggatggagatcttctggtgaatagagatggagttcgaattgtttcgcagagtgaagttgcagctccttcagttatacagccatcagacaaccagttatgcttagctgattttgaagcagtaaaagttattggaaagggaaatggtggtatagtgcggctggttcagcataaatggacagggcaatttttcgctctcaaggttattcagatgaatattgatgagtctatgcgcaaacatattgctcaagaactgagaattaatcagtcatcccagtgtccatatgttgtcatatgctatcagtcgttcttcgacaatggtgctatatccttgattttggagtatatggatggtggttccttagcagattttctgaaaaaggtcaaaacaatacctgaacgatttcttgctgttatctgcaaacaggttctcaaaggcttgtggtatcttcatcatgagaagcatattattcacagggatttgaaaccttcgaatttgctaatcaatcacagaggtgatgtcaaaatcacagactttggtgtgagtgcagtactagcaagcacatctggactggccaatacctttgtcggcacatacaactatatgtctccagagagaatttcaggaggtgcctatgattacaaaagcgacatttggagcttgggtttagtcttgctcgagtgtgcaacaggtcatttcccatataaaccacccgagggagatgaaggatgggtcaatgtctatgaacttatggaaaccatagttgaccaaccagaaccttgtgcacctcctgaccaattttctccacaattctgctcattcatatctgcatgtgtccagaagcaccagaaggacagactgtcggcaaatgatctcatgagtcaccctttcatcaccatgtacgatgaccaggatatcgatcttggatcttacttcacttccgcaggacctccattggcaacacttactgagctataataggttttctacaatgtcttgcaactgatggaatttcggtcaatagcttttccagtcgcaacgttgcaaaaattagaagccttttaaaaggcattgagaatcaaaatgaagcagatgaagccattattgtacttttcaagtctccggtaggtagcgttgggagtgtaactgtgacattttctactatgtatgtgattcaaatgggaacaactccagatatccttttgatatgacttacttttgacattaatccttggtggtgcaagtgtttttggtttacaatttgacttctaccttttagcacatgaagttgtttattgtcagtgttgaactgaatgtaaaacttttaagatcccatttctccttatgagatcattttagagaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="-" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90675" stop="84093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90375" g_stop="89897" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89729" g_stop="89645" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="564" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88472" g_stop="88338" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="699" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87557" g_stop="87333" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="924" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.322" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87250" g_stop="87068" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="925" r_stop="1107" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87067" i_stop="86655" i_length="413">
            <donor d_prob="0.217" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86654" g_stop="86431" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1108" r_stop="1331" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86430" i_stop="86321" i_length="110">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86320" g_stop="86275" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1332" r_stop="1377" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="86274" i_stop="86186" i_length="89">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="86185" g_stop="86084" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1378" r_stop="1479" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="86083" i_stop="84782" i_length="1302">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="84781" g_stop="84388" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1480" r_stop="1873" r_length="394" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="-" ref_id="SGN-U316934" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90375" e_stop="89897"/>
          <exon e_start="89729" e_stop="89645"/>
          <exon e_start="88472" e_stop="88338"/>
          <exon e_start="87557" e_stop="87333"/>
          <exon e_start="87250" e_stop="87068"/>
          <exon e_start="86654" e_stop="86431"/>
          <exon e_start="86320" e_stop="86275"/>
          <exon e_start="86185" e_stop="86084"/>
          <exon e_start="84781" e_stop="84388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTATTATTTGCAAGACTTCTACATAGAGTCTTTCAGTTGACCCAGCTAAGCAGAAATGCCCCTAAGCTCCCCAATTTTTTCCAACATATATTTTTTTTTTCAAAAAAAATAATCATATAGGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCTGTACTTACTTTATCCCTCTCTCTTATGTCACATTTATGCTAAATTCATCTGTACTTTGTGTCAACTGACTTGAACTGTTGGATCCACTTCTTGTATCTCTTATTTCTGTGTTTCTCTAGCTATGGTTATGTATTTTGATGAGATGTTTTTGGTATTTTGTTGTATAGGACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCTGTACACTTTCTCTTTTGAATTACTTATGTTGTATTTGATTAAAGGAAATGTTGGTTTGATTTGTTTGAATTGCTTTTATAGTTCTGTAGTCTTGCTTGGATTGGGTAGTAGGATGATCCTTTGCTTAGTTTACATGGGATTAAGAGTAGACTATTCTCTAATTTGCCTTTGGAAGTTTGAAGTTTGAATTGGAATGTTTAGCTGACCTGAGATAGGAGGGTATGGATGTTGCGGATTAGGGTAGAAGGTAAGTAGGTAATTGAGCTTTGACTCATTTTTCGACGGGTTTAAGATTGGTGGGTGTCGGGGAACACTGTGTCTGTTGTAGTATTAGTCTCATACATGTATTTTCTTGCCTTTGATATCTGGTGTTCATTGTGTTTCAGTTACCACATTCTTTTCTTTGAATGCTTTGTACTGCTTTCCTTAGTAATTGACATGTTTTCAACACTGGTCTATTCCCTTTTCCGTAAATACTTTGATTTGCTGCATTGAGCCGAGGGTTTTTCGAAAACAAGTTCTCTACATCCATTAGGTAAGGGTAAGGTCGGGGTACACTCAACCTTCCCCATACTCCACTTGTAAAATTACACAGGATATGGCTAGAAAATCTAAATGCATAAAGAATTGAAATTTTTGAATGCTTACTCCCAGCCAGCTTATAAAGAATTTGAAATGGAAGAAAAATTGAAGATCTAGATCTAAAAGCTGATTTTCTGAATCAGGATATTAAAGCTGTGATTAGGGACTCATCTTATATGAAGGGTCCAAATAACAATTTACGTATTTGAATCTAGAGATAGACATATTTTTATATAACTGATACTAATTAGCGGGAATGACTCTTTGTTATATTAGTACGTTTACTTTAGGTCCAGAATTTGGTAGGAGCCTCTTAGTCTTGTTAGAAATTTATATACGGAAATGTAGAGAACCTCTGGTTCTAGAGGAACTACTGTTTTAAATTTATCGGACTAAGACGGACTTTAATGGAGCGATAAGAGCAGTGGGGATTCACTTACCTGATGCCAACTTGCTAGGAGTTGAGGTGCAGTCGTCGTTTTAGTCCATACCTGGACATTTTGTGTTCTTCATCTTCCTTTATATCCATTTTCGCAATCCGTTGCAACTATAATGGCGTATTTATTCTGGCATTTGCAATTTTTTTTCAGCCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAGGTATATTTCAGCTTCCATCTCTATTCTGCTTATCCTGGTTGTTTGCTATTCCCCTGAGTAGCAGCAGACTGTTTACATATCCGTTTGATATATTTCATTAATTTGGTGCGATATTCCTTCTTAAAAAATGATAGAAGACAAATTGACGATTGGGACGCGAATTCTTTCATAGAGATGTTTCCTCCCTATTGTTCCATTTCTTGTCTTATAACTTGTACTATTTTTGGTAGCAATATGTTAACTATGTTGCGTGGACTCTTCAAAAATGTCATCGGGTGCGTGTCGAATCTTTCATAAGTAGTGCATTTTTTGGAGGATCCGACACGGGTGCATCGACATTTTTGGAGAGTCCCTCACCAAAGCCTGAAGAGTTGACAGTATGACTATCTCAATCAGTTTCTGAATATTGAGATTGCTATTTTACCCAATACTAGGGTGCTTTCAAGTCTCACCATTTTATTACACAAAGATCATATTGACTTGTTCTTTGCAAATTCAGTGGAAGCCATAATTTTCAATAGGGGGTTCTAAATATGAATGATAATACACAAAGAAGCCAAATGGGGTTCACGATCTACTATATCTACATAAAAAATAATTTTAACCTGTGTAGTGTAATTTTCCGCCCAAGGGGGTTAAGATGAATCCCCTTGGTCCTACCTGGCTCCAAACCTGTTCGCAATGCTGATGGAGGGGTTTGTTTATTGGACAATCTGTTAGCTTATGTTGACGTATGCTTTAATTTGTTCCTTTACTGACGAACAGTTTTATATCATTCAGGTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAGGTAGCCAGTGAACAATTTAAATACCACAGGAGAAGAATTTGTTCAAGTACTAATGTTTCAACCGTATTCCTTCACCAATTAGGTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCTGTGAGTATCTGTGACCTGATTTTTGTAGAAGCGAATATAGAACTGCGCTGCTAGGTAATTTTCACTCATAAATATCACAGAGAAATATTTTCCTAGCATATTTTTCTGGAACTTAATCACTTCCTCCGTTTCAATTTGTTTGTTTAGTCCGTTGAAAAAAGAATGCCTCTTTCCTTTTTTGGCAATTTCTTAATTCCAACTTTTCATGCAACATATCTAAGACCACAAAATTAAACGACATTTTGGTACATTTGACATATCTTTAATTTAAGACCATGAGGTTCAAAAGTTTTCTTTACTTAATTTCCGTGCCAAGTCAAAACTAGACAAACAAATTGAAATAGAGGGAGCATTACAATCTGCCTATGCTAAAAACCTCCAAGTTGCTGCTGATGTTCTGTTGTTTGCTATAGCCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATGGTAAGCGCTATAGTTATGTACCATCTGAAACTTCTAATCTAATTGTCCTATGAGTGTCTGGTAGATGTGTTTTCTAGTTCGGAAGCTCACTACACAATAACTTGTTTCAGTGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATGGTAGTGATAATCACTTTTTTTTGCCTTTCTCGAAGTTGCTTATAGATCAATTACTAATGTAGTGGCTATTTGGGATTCATGTAATACAGAGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAGGTATGCTTGCTTAAGTCTTTGTTAAATGTACTCCTTTTGTAGCTTTTAGAAAGAACTAATTTTAGATCTTGTGTGTCTATTTTTATTAAGTATATATTGGAGTGTGTTTGCACAAATTATCTTCTTCATCATCTTGGATCGGATCCAGTAGCATTATGTAATTGTCTGCGGCTCTTTTCTTTTGCCTCAGATATCCAAGGGTTATATGGTCACATAGACCTTGCCTCTCGTTGGGACTCAACCCTCTAGCTAGTTCCATTGACCAGTTAAGGTCTCGTAAGATAGAGTGACCCGCGCACAGCGGTCTTGTATGAGCAAAGCTTGTATTCACTTCTATTTGCGTACACATTTGCTTATAGCGAAGGTTGAAGAATATTTATCTTACTGATATCACTTTACTAATATCTGTGTTCTGGGTAGTTTCAAATTGTTAATAGCTGATACAGTTATCTCTGGCAGTAAATGAATATGTATACCAGCAAAATGGCTAAACATATGAATTAGAAATGAATTCGTAAACTCCCTATTTCAAAAACTCCTTTGTTGCTTCTGGAATATTAAATGTGAAGCAGTTTCATAGTTCACAAGTTTGGTTTAGCCTCTCAGCGTTCTCTCATAAACCATATATCGTTGATTGGACAAACTCCTTGCCTGTATCTGTCTTTTGACAACTTATCATAAAACGAAGTGGTCAATTATCTTTTAGTAAAAACATTTGTCTGTGGAGGACACATATTAGGGTAGTAGGTTAGCAGGTAGAAGAGTGTGGTGTTGCAAAATATTACTTTTCTTGTTCGTCGATTTCATTATGATCTGTTGCTTCCTATACTTTGATAATAGTAGTTTTTGTTGTAGTTATTGATGCTTTGTCATGCTTTCTGTAATATTTTGCCATGGCTTCTTCATTTCTGCTATTTCCTTTTCTGAACTGCTTAGATCTCTTTTTCATCGAGCCAAGGGTCTATCAGAAACAACCTCTCTACCTCTAGGGTAGTTGTTGTTGTTTGTTAATCCCCCTTCTACTGGATTTTTTGTTACTACTCAGATCTTAGTTTAGTCATGATTAATCGTCCTAGACTGTTTATTGTACTTGTGCTCAATTTTTTTTTATCATTTCACTTCACTTAAATATGTGACTAAAAGAGCTTCAGAATCTTTTCAACTGGTGTGATTTCAGCGATTATATTATGACTAGCCTTGTTATGTATGTGCAGTCCTTTTGCCAACCAGATTATTTTCCCGACATAAAACTTATCCTATTCCCCAAAAGCATGATTCTGTCTCGACTTCTCATTCTCACAGGTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCCTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAATGTAAAACTTTTAAGATCCCATTTCTCCTTATGAGATCATTTTAGAGACCTATCAACTCAT</genome_strand>
        <mrna_strand>CTGCTATTATTTGCAAGACTTCTACATAGAGTCTTTCAGTTGACCCAGCTAAGCAGAAATGCCCCTAAGCTCCCCAATTTTTTCCAACATATATTTTTTTTTTCAAAAAAAATAATCATATAGGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT.......................................................................................................................................................................GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAG..................................................................................GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATG..............................................................................................................TGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATG.........................................................................................AGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCCTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAATGTAAAACTTTTAAGATCCCATTTCTCCTTATGAGATCATTTTAGAGACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317961" ref_strand="+" ref_description="SGN-U317961        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: AT4G29830.1 | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 7 WD-40 repeats (PF00400); G protein beta subunit-like protein, Schistosoma mansoni, gb:U30261 | chr4:14597699-14599264 FORWARD | Aliases: F27B13.70, F27B13_70 (evalue: 4e-123, score=437) genbank/nr: vernalization(evalue: 3e-151, score=537)">
      <seq>ctctacccaatccaaaaatcgccatgaaactagcttcacttgacagtgtgacaaatgctcacgacgattccatttggtcggcggcgtgggtccggtcgacggaggaatatccagcgttgcttctcaccggaggtcttgacgaaactgtgaggttatgggacccgagtaacttcgcttgtgttcaaactttcaccggtcattgtctcggcgttgtatctgttgctacacatcctactcgtagaattgctgcatctgcttctatagatagctttattagagtttttgaggttgatactaataacactattgctactctcgaagctcctccttctgaagtctggcaattgcaatttagtccaagtggtagcaatctggcagcagctggaggtggtagttcatcagtcaaggtgtgggatactaatcggtgggaacttgttaccacgatgtccattcctcgtcaaggagccccacaaccatctgataaaagcaccaacaagaaatttgtcctttcagttgcatggagtcctgatggtagtcttcttgcttgtggatcagttgatgggactatctctgtttttgatgtagctcgcgccaagttccttcacttcttagatggccataccatgcctgttcgttctctcgtgttttcaccttcacttcacgactcaagaatactcttctcagcatcagatgacggtcatgtgcatatgtatgatgctgaggggaaaacattgctcacgtctttatcgggtcatgcaagttgggttctgagtgttgatatctctccagacggggcagcaattgcaacggggtcaagtgacaagacggttaggctatgggatcttaagatgagagcggctacgcaaactttaaccaaccatacagatcaggtttgggctgtggcttttggaccaacatcaaggactgatgttaggtcctgtatgcttgcaagtgtgtctgatgacaagagtttatcattctatcagtactcttaacagttgcagccattgcatgctttgtatgttggtatgatgtctcaagaaaatatttgacttaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0011D12-sQZmv/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0011D12.1" temp_strand="+" temp_description="C12HBa0011D12.1  AC216345.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0011D12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="93929" stop="97905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94229" g_stop="94590" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94591" i_stop="96911" i_length="2321">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96912" g_stop="97604" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="1055" r_length="693" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1056" polyA_stop="1080"/>
      <MATCH_line gen_id="C12HBa0011D12.1" gen_strand="+" ref_id="SGN-U317961" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1055</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0011D12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94229" e_stop="94590"/>
          <exon e_start="96912" e_stop="97604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCCAATCCAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGTGTAAGTAAAGGAAAATGAAATTTTGATTGCACTGTAAAGTTGTTGTCATGCTGAAATGTAGGATAAGGTTGCTTACAATAGATTAGGAAGTGACAATTTCGAGATTTGAAATAGTCGCTAAGGCTGCATGCATTAAATCCTTGTGACTTGGCTGTTTCCCGGGTCACAAGCGTAGCGGGAGCTTAGTGCGCCAAATTGCCCTTTTTGGATTGCCTGTTATTGATGTTAACATTTAGCTTTAGTTTGAAGATGCATTGGAAACAGCCTCTTGCAGAAATGCAGGGCAAGGCTGCGTACAATAGATACTTGTGGTCAGGCCTTCCCCAGACCTGTGCTTAGTGAGAGCTTAGTGCACCAGCATGCGAAGTTGCATTGGAATTGCTTCAACCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTTTTTATGCATAAAGTTACAGTCTTTGTTTGGTTAGAATTGGTTTGGTTGAGACTTGAGAGGCTTGTATGCTAGTGGGAGCTTAGTGTACCGGCATGCGTTTTTGTTTGGATTGCTTGTTAGTTCTGTTAAAATTTAGCTTTAGTATGAAGTTGCATTGGAATTGCTTCATCCTTTTTTATGATTGATAATGTGGTGAAATATATAGGTTTGGAAATTTGTATTGTTTTTCATTTTGTATGATTCTTTATGCATAAAGTTACAGTCTCTGTTTGGTTAGAATTGGTTTGTTTAAGACTTGAGAGGCTTGTATGCTAGTGCTGTGAGAAGCTTTAGTTTCATGAGAGATATAATGTTTTTTTTAAGAGACAGATTATTCACCAGCTTTTAAATGATATGGTCTGGTCATGTACCGAGCAAAATGGATATCAATGATCCCAGCTAGTTTGGAATTGAGGCTTCAAATATGATTGGTTAACTTGGTTGTCTCTGTTAGTCTATCGTCTAGTGGTTTCTCTTTTTCCCTATCCTTTTTTATTGGCTGTTGGTAAATATTAGTTGTTCTTCTAGTGCTAGTCAAACTGTTAATGGTTGTACTAGAAGTTGATCTTGAGGTTAAGGCCTAAGGGAATATTCATATCTCTTCCATTCCTATACAAAATCCTGATTACGAGCTCAATGGAAATATCCTCCTTGGTACGAGCTCAACGGAAATATCCTCCTTGGTACCTCTATCTTTTTGCCCTGTTCCTTCAAAAATTACTTAAAGTCGGTGTAACAATATGGGTTGCCCTTACTTTAATGTTTCCGAAAGGGATCGAGTGAATAGGTGGCTTTACTTGTTTAGTAGTTGTGGTGGTGCCAAGATTCCTCTAGATATTTTTTTAATGCAAATACCTTATGAACAACAAATTACAGGCTGGAACTCAAAACAGTTTTCTGAAAAATGTCTCTTTAAAATGTCTTGTTAGAAGGCCCTTCCTAAGTAGAAGCATTGGTGACCCAAATTGTTTGCCCCCAGAACTTTGTTCAAGTGCAAAGGTTGAGAGACCAATGACTTAGGTCGCAGGTTCTAGGTGTGCCATGTGAACTAAGCCTGGTATTTAATTAGAGAAGGGTAGAGGTACTAACCCATCATCCCCGAGTTTCAAAGACCAGTTGTTGGTTCTAAGGATTTGCGCCACACTGATTTCTCAGCCATAAAAAAAAAAAAAAACTTTCTGACTGGTACTGACTGTGAAGAGTAATGCTGATCTAGTTCTTAGATCTGGATGAAAACAAACACGAATTTGATAAAGCGCTAGGATTTTTAGTGGACTCTGTATTAGCCATTATTTCTTGCTGTTCATCTTTATAAACGTTCATGTTATTGGATAAGAAATGTTGTTGGAACTGCAGTGGCAAATTGGCAATAGATAAGTGGGTAATCTACTTTATCTTAAAATAGCTATGATCTGCTTATATTATGGATTGTGACAGAGATGAGAACTTTTGTTTGACTAAACTGTCAAATCAATCATCTACATCTCAGTCTCCCAAGTTATTTGGACTCAATTTACCTATCAAAAAGAAGAAAAATAACAAGAAAATTGTTATTTTCTATAGTCTTTAAACATTGGGATTCATTTCCTTTATGACAAGTTAAAAGGGTGTTGGTATGTATACTTGTCACTTCCACATACATCTTGATGGTTTACTTTGAAATCTCTCTCATCATACCAGTATGTATGTTACTTGATCTATTGTCTTCTGGTATTCAATGTTTGCGGAAGAGCAATGTCTCCTTTTTATGATTTAACTTTTCGATGCACATCTTTATAGGATGCTTTAGGCAGTCGTCTTATGATTCTCAAACATTTTCCAGGGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGCCATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTGACAAGACGGTTAGGCTATGGGATCTTAAGATGAGAGCGGCTACGCAAACTTTAACCAACCATACAGATCAGGTTTGGGCTGTGGCTTTTGGACCAACATCAAGGACTGATGTTAGGTCCTGTATGCTTGCAAGTGTGTCTGATGACAAGAGTTTATCATTCTATCAGTACTCTTAACAGTTGCAGCCATTGCATGCTTTGTATGTTGGTATGATGTCTCAAGAAAATATTTGACTT</genome_strand>
        <mrna_strand>CTCTACCCAATCCAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGCCATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTGACAAGACGGTTAGGCTATGGGATCTTAAGATGAGAGCGGCTACGCAAACTTTAACCAACCATACAGATCAGGTTTGGGCTGTGGCTTTTGGACCAACATCAAGGACTGATGTTAGGTCCTGTATGCTTGCAAGTGTGTCTGATGACAAGAGTTTATCATTCTATCAGTACTCTTAACAGTTGCAGCCATTGCATGCTTTGTATGTTGGTATGATGTCTCAAGAAAATATTTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9905" PGL_stop="5741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9905" e_stop="9235"/>
            <exon e_start="8443" e_stop="8316"/>
            <exon e_start="7953" e_stop="7690"/>
            <exon e_start="7492" e_stop="7222"/>
            <exon e_start="6380" e_stop="5741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.997" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.992"/>
          <exon-intron don_prob="0.896" acc_prob="1.000" e_score="0.993"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9905" e_stop="9235" e_length="671"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9234" i_stop="8444" i_length="791"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="8443" e_stop="8316" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.799" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8315" i_stop="7954" i_length="362"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="7953" e_stop="7690" e_length="264"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7689" i_stop="7493" i_length="197"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="7492" e_stop="7222" e_length="271"/>
          </exon>
          <intron i_serial="4" don_prob="0.896" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7221" i_stop="6381" i_length="841"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="6380" e_stop="5741" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9905" stop="9235"/>
              <exon start="8443" stop="8351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9299" stop="9235"/>
              <exon start="8443" stop="8316"/>
              <exon start="7953" stop="7690"/>
              <exon start="7492" stop="7222"/>
              <exon start="6380" stop="5741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318164" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTTCTAATAATTTCCTTTTTTTTTTCTTTCTTCTATTATGGCTAAGTTTTTTTTATCCTATGGTTATAATATTATTATTTTCTTTATTATTACTCATTTAATGTCCATTTTAGGAAAGTTAAAACCATGGAATCCTTCAATTCCTTATGAAATTCTTTCACTTAATATTTCATCAAAACTTAGTACAAATTCTCATGCTATTAAAGAATCTTCCAAAGATTTTGGAAAAATTATTCAAGAAATATTACCAGCTGCTGTTCTTTATCCTTCTTGTGTTAATGACATAATTGACCTCATACAATTTTCTTATGACCTTTCTGTCCCTTTTCATGTAGCAGCCAAAGGTCATGGACATTCCATTAGGGGACAAGCCATGGCAAAAAATGGGGTAATTGTGGAAATGAGTTCTTTAAATAATAATAATAATGAGAATTGTGGTGTTAGGGTTTCTTGGGATTCGGATTTAGGGTTTTACGCGGATGTTGGAGGTGAACAATTATGGATTGATGTTCTTCATAACACCCTAGAGTATGGCTTAGCACCTGTTTCATGGACAGATTATTTGTACCTTACCGTTGGTGGTACACTCTCTAATGCTGGAATTAGTGGTCAAACTTTTCGATATGGTCCTCAAATAAGTAACGTTCATGAGATGGATGTTATTACAG : GTAAAGGGGAATTAATGACTTGCTCCAAAGATATGAATTCAGAATTGTTTTTTGGAGTTTTAGGAGGTTTGGGACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGA : GTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATGACCAAAATGCTAATACTATTGATAAG : AGGAGTTGAAGAAGTTGGTAAAAGGATTGAAGTATGTAGGTGGATTTATGTTCAAGAAAGATGTGAGTTTTGTGGAATTTTTGAATAGAGTTAGAAGTGGGGAATTAGAGTTACAATCAAAAGGAATGTGGGATGTTCCACATCCATGGCTCAATTTGTTTGTACCAAAGTCTTCTATCATGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAG : ATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGATCTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTATAAGGCTATAGGGTGGTAAAAGGTGACAGATATTTCGTGAAATCAGTTAAACTATGTAAAAGCTGATTCGAACATCAGAATCGTTAAGGGTAGGAGGGAGGGTTGTAAGTTTTTAATTGTTGGAGTTGATGTATTTTTATTTTATTTTATTTTGGTGTGTTAGAAAGATAAATTAGATGATGTAAAGCTTTTTTAGCTACCATTTAATTATAATATGTGAAGTTTGTTTTTTATAA</gDNA_template>
            <first_frame> L  L  L  I  I  S  F  F  F  S  F  F  Y  Y  G  *  V  F  F  I  L  W  L  *  Y  Y  Y  F  L  Y  Y  Y  S  F  N  V  H  F  R  K  V  K  T  M  E  S  F  N  S  L  *  N  S  F  T  *  Y  F  I  K  T  *  Y  K  F  S  C  Y  *  R  I  F  Q  R  F  W  K  N  Y  S  R  N  I  T  S  C  C  S  L  S  F  L  C  *  *  H  N  *  P  H  T  I  F  L  *  P  F  C  P  F  S  C  S  S  Q  R  S  W  T  F  H  *  G  T  S  H  G  K  K  W  G  N  C  G  N  E  F  F  K  *  *  *  *  *  E  L  W  C  *  G  F  L  G  F  G  F  R  V  L  R  G  C  W  R  *  T  I  M  D  *  C  S  S  *  H  P  R  V  W  L  S  T  C  F  M  D  R  L  F  V  P  Y  R  W  W  Y  T  L  *  C  W  N  *  W  S  N  F  S  I  W  S  S  N  K  *  R  S  *  D  G  C  Y  Y  R :   *  R  G  I  N  D  L  L  Q  R  Y  E  F  R  I  V  F  W  S  F  R  R  F  G  T  V  W  N  N  N  K  S  K  N  C  L  G  *  S  T  N  K   : S  E  M  G  E  N  V  I  *  *  F  L  K  I  H  K  R  S  R  T  S  Y  F  N  S  *  *  W  I  G  L  C  *  R  L  S  N  D  G  A  K  L  S  K  *  L  E  I  F  I  L  F  T  F  Q  S  N  Q  N  C  F  I  I  I  Q  K  *  N  H  V  L  L  G  N  S  E  V  L  *  *  P  K  C  *  Y  Y  *  *   : E  E  L  K  K  L  V  K  G  L  K  Y  V  G  G  F  M  F  K  K  D  V  S  F  V  E  F  L  N  R  V  R  S  G  E  L  E  L  Q  S  K  G  M  W  D  V  P  H  P  W  L  N  L  F  V  P  K  S  S  I  M  H  F  N  A  A  V  F  V  D  I  I  L  R  Q  N  K  T  N  G  P  I  L  V  Y  P  T  S  R  K  R :   W  D  D  R  M  S  A  I  I  P  E  E  E  T  F  Y  C  V  G  L  L  H  S  S  S  G  Y  N  E  C  K  I  L  D  N  Q  N  E  E  I  L  N  Y  C  D  K  V  G  L  N  I  K  Q  Y  L  P  H  Y  K  T  K  E  D  W  I  K  H  F  G  K  K  W  N  I  F  Q  Q  R  K  D  L  F  D  P  K  M  I  L  S  P  G  Q  R  I  F  N  *  V  F  I  N  K  *  Y  D  I  M  I  G  M  I  K  D  D  K  Y  F  V  K  L  V  E  M  C  K  S  W  L  E  H  Q  N  R  P  I  R  L  *  G  G  K  R  *  Q  I  F  R  E  I  S  *  T  M  *  K  L  I  R  T  S  E  S  L  R  V  G  G  R  V  V  S  F  *  L  L  E  L  M  Y  F  Y  F  I  L  F  W  C  V  R  K  I  N  *  M  M  *  S  F  F  S  Y  H  L  I  I  I  C  E  V  C  F  L  * </first_frame>
            <second_frame>  Y  F  *  *  F  P  F  F  F  L  S  S  I  M  A  K  F  F  L  S  Y  G  Y  N  I  I  I  F  F  I  I  T  H  L  M  S  I  L  G  K  L  K  P  W  N  P  S  I  P  Y  E  I  L  S  L  N  I  S  S  K  L  S  T  N  S  H  A  I  K  E  S  S  K  D  F  G  K  I  I  Q  E  I  L  P  A  A  V  L  Y  P  S  C  V  N  D  I  I  D  L  I  Q  F  S  Y  D  L  S  V  P  F  H  V  A  A  K  G  H  G  H  S  I  R  G  Q  A  M  A  K  N  G  V  I  V  E  M  S  S  L  N  N  N  N  N  E  N  C  G  V  R  V  S  W  D  S  D  L  G  F  Y  A  D  V  G  G  E  Q  L  W  I  D  V  L  H  N  T  L  E  Y  G  L  A  P  V  S  W  T  D  Y  L  Y  L  T  V  G  G  T  L  S  N  A  G  I  S  G  Q  T  F  R  Y  G  P  Q  I  S  N  V  H  E  M  D  V  I  T   : G  K  G  E  L  M  T  C  S  K  D  M  N  S  E  L  F  F  G  V  L  G  G  L  G  Q  F  G  I  I  T  R  A  R  I  V  L  D  K  A  P  T  R  :  V  K  W  V  R  M  L  Y  D  D  F  S  K  F  T  K  D  Q  E  H  L  I  S  I  H  N  N  G  L  D  Y  V  E  G  S  L  M  M  E  Q  S  S  L  N  N  W  R  S  S  F  Y  S  P  S  N  Q  T  K  I  A  S  L  L  S  K  N  K  I  M  Y  C  L  E  I  V  K  Y  Y  D  D  Q  N  A  N  T  I  D  K  :  R  S  *  R  S  W  *  K  D  *  S  M  *  V  D  L  C  S  R  K  M  *  V  L  W  N  F  *  I  E  L  E  V  G  N  *  S  Y  N  Q  K  E  C  G  M  F  H  I  H  G  S  I  C  L  Y  Q  S  L  L  S  C  I  L  M  L  L  F  L  W  T  *  S  S  D  K  T  R  Q  M  D  P  Y  L  S  T  Q  Q  V  G  K   : D  G  M  I  G  C  Q  Q  *  Y  Q  K  K  K  H  F  I  V  W  D  F  Y  I  L  Q  V  D  I  M  N  A  K  F  W  I  I  K  M  K  K  Y  *  I  I  V  I  K  L  A  S  I  *  S  N  I  F  H  I  T  R  Q  K  R  I  G  S  N  I  L  V  K  N  G  I  F  F  N  K  E  K  I  Y  L  I  Q  R  *  F  Y  H  Q  D  K  E  F  L  I  R  F  S  S  I  N  S  T  I  *  *  *  G  *  *  K  M  T  N  I  S  *  N  *  L  K  C  V  K  V  G  S  N  I  R  I  V  L  *  G  Y  R  V  V  K  G  D  R  Y  F  V  K  S  V  K  L  C  K  S  *  F  E  H  Q  N  R  *  G  *  E  G  G  L  *  V  F  N  C  W  S  *  C  I  F  I  L  F  Y  F  G  V  L  E  R  *  I  R  *  C  K  A  F  L  A  T  I  *  L  *  Y  V  K  F  V  F  Y   </second_frame>
            <third_frame>   T  S  N  N  F  L  F  F  F  F  L  L  L  W  L  S  F  F  Y  P  M  V  I  I  L  L  F  S  L  L  L  L  I  *  C  P  F  *  E  S  *  N  H  G  I  L  Q  F  L  M  K  F  F  H  L  I  F  H  Q  N  L  V  Q  I  L  M  L  L  K  N  L  P  K  I  L  E  K  L  F  K  K  Y  Y  Q  L  L  F  F  I  L  L  V  L  M  T  *  L  T  S  Y  N  F  L  M  T  F  L  S  L  F  M  *  Q  P  K  V  M  D  I  P  L  G  D  K  P  W  Q  K  M  G  *  L  W  K  *  V  L  *  I  I  I  I  M  R  I  V  V  L  G  F  L  G  I  R  I  *  G  F  T  R  M  L  E  V  N  N  Y  G  L  M  F  F  I  T  P  *  S  M  A  *  H  L  F  H  G  Q  I  I  C  T  L  P  L  V  V  H  S  L  M  L  E  L  V  V  K  L  F  D  M  V  L  K  *  V  T  F  M  R  W  M  L  L  Q  :  V  K  G  N  *  *  L  A  P  K  I  *  I  Q  N  C  F  L  E  F  *  E  V  W  D  S  L  E  *  *  Q  E  Q  E  L  S  W  I  K  H  Q  Q  E :   *  N  G  *  E  C  Y  M  M  I  S  Q  N  S  Q  K  I  K  N  I  L  F  Q  F  I  I  M  D  W  I  M  L  K  A  L  *  *  W  S  K  A  L  *  I  I  G  D  L  H  F  I  H  L  P  I  K  P  K  L  L  H  Y  Y  P  K  I  K  S  C  I  A  W  K  *  *  S  T  M  M  T  K  M  L  I  L  L  I  R :   G  V  E  E  V  G  K  R  I  E  V  C  R  W  I  Y  V  Q  E  R  C  E  F  C  G  I  F  E  *  S  *  K  W  G  I  R  V  T  I  K  R  N  V  G  C  S  T  S  M  A  Q  F  V  C  T  K  V  F  Y  H  A  F  *  C  C  C  F  C  G  H  N  P  Q  T  K  Q  D  K  W  T  H  T  C  L  P  N  K  *  E  K  :  M  G  *  *  D  V  S  N  N  T  R  R  R  N  I  L  L  C  G  T  F  T  F  F  K  W  I  *  *  M  Q  N  F  G  *  S  K  *  R  N  I  K  L  L  *  *  S  W  P  Q  Y  K  A  I  S  S  T  L  Q  D  K  R  G  L  D  Q  T  F  W  *  K  M  E  Y  F  S  T  K  K  R  S  I  *  S  K  D  D  S  I  T  R  T  K  N  F  *  L  G  F  H  Q  *  I  V  R  Y  N  D  R  D  D  K  R  *  Q  I  F  R  E  I  S  *  N  V  *  K  L  A  R  T  S  E  S  S  Y  K  A  I  G  W  *  K  V  T  D  I  S  *  N  Q  L  N  Y  V  K  A  D  S  N  I  R  I  V  K  G  R  R  E  G  C  K  F  L  I  V  G  V  D  V  F  L  F  Y  F  I  L  V  C  *  K  D  K  L  D  D  V  K  L  F  *  L  P  F  N  Y  N  M  *  S  L  F  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9892" stop="9235"/>
                    <exon start="8443" stop="8316"/>
                    <exon start="7953" stop="7690"/>
                    <exon start="7492" stop="7484"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPFFFLSSIMAKFFLSYGYNIIIFFIITHLMSILGKLKPWNPSIPYEILSLNISSKLSTNSHAIKESSKDFGKIIQEILPAAVLYPSCVNDIIDLIQFSYDLSVPFHVAAKGHGHSIRGQAMAKNGVIVEMSSLNNNNNENCGVRVSWDSDLGFYADVGGEQLWIDVLHNTLEYGLAPVSWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVHEMDVITGKGELMTCSKDMNSELFFGVLGGLGQFGIITRARIVLDKAPTRVKWVRMLYDDFSKFTKDQEHLISIHNNGLDYVEGSLMMEQSSLNNWRSSFYSPSNQTKIASLLSKNKIMYCLEIVKYYDDQNANTIDKRS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7690" stop="7222"/>
                    <exon start="6380" stop="6089"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EELKKLVKGLKYVGGFMFKKDVSFVEFLNRVRSGELELQSKGMWDVPHPWLNLFVPKSSIMHFNAAVFVDIILRQNKTNGPILVYPTSRKRWDDRMSAIIPEEETFYCVGLLHSSSGYNECKILDNQNEEILNYCDKVGLNIKQYLPHYKTKEDWIKHFGKKWNIFQQRKDLFDPKMILSPGQRIFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="24005" PGL_stop="29168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24005" e_stop="24267"/>
            <exon e_start="24404" e_stop="24466"/>
            <exon e_start="26641" e_stop="26702"/>
            <exon e_start="28157" e_stop="28238"/>
            <exon e_start="28334" e_stop="28401"/>
            <exon e_start="28479" e_stop="28562"/>
            <exon e_start="28638" e_stop="29168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.763" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="24005" e_stop="24267" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24404" e_stop="24466" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26641" e_stop="26702" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="26703" i_stop="28156" i_length="1454"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28157" e_stop="28238" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.763">
            <gDNA_intron_boundary i_start="28239" i_stop="28333" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28334" e_stop="28401" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.832">
            <gDNA_intron_boundary i_start="28402" i_stop="28478" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28479" e_stop="28562" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28563" i_stop="28637" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="28638" e_stop="29168" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24005" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24024" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
              <exon start="28157" stop="28238"/>
              <exon start="28334" stop="28401"/>
              <exon start="28479" stop="28562"/>
              <exon start="28638" stop="29168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACTCTAAGGGGAAAAAGACGTCGTCGTTTTACGAGACGATTCGTCTTCAAGTTTCAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG : ATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAG : GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAA : GATAAACAGGAGATAATTATTGAAAAGGTCACCAGAAACAGACGAAAGAGTATCACTACCATCAAGGGCCTTGAAATCTTTG : GTGTTAAACTAACTGATGCTTCGAAAAAGCTTGGTAAAAAGTTTGCTACTGGAGCTTCTGTGGTTAAG : GGCCCGACTGAAAAGGAGCAGATCGATGTTCAAGGGGACATATCCTATGACATTGTGGACTTCATTACAGAAACCTGGCCAGAT : GTTCCAGAGTCCGCAATATTCTTCATAGAAGACGGAAAAAAGGTTCCAGCTGCATAAACTACGGAGATGACATCCCTGTTCCCAGCAGAGTGTTTCCCAAGCAAATGCTCGTAGCACTGTGTTCGTTGAAATTTGAGGTGAGAATATGTGTTGGCTCTATAGATGTGGCTACTATGGTTCCACCCTCTATATAGCAAATAATATAAAAAAGCAAAGAAACACGTCGTATCACATAATGTCGTCCATTCTTGGTGAAGGTTCATGTAATCAATCGATCAGACTTGCTTGAGATAGAGGCGTAGTTGTGTTTTTGGCATTTTGAGCACATCCAATCACCAATGGCTTTTGATGTGAAGTCAATTTTGTTGAACCAAAAAAATTACATTTGTAACCCCACCTAGTTTATGTTTCACATGCCTAATTAAAATTTTATTAACATTCCTAAGTGTGAATTTACATTCTAAAATTTCCCAAGTTTCAATTATATACACCATCAATGCATAATAAAACTTTTTACTCATTCCTTCAATA</gDNA_template>
            <first_frame> I  L  *  G  E  K  D  V  V  V  L  R  D  D  S  S  S  S  F  S  E  F  I  G  A  T  N  R  S  F  F  F  S  L  S  F  C  F  N  G  G  K  A  S  N  S  *  G  S  I  L  W  S  L  R  F  T  C  *  V  L  *  I  R  I  R  I  *  E  M  Q  T  L  V  D  P  K  C  T  R  S  L  P  G  P  C  *  R :   F  *  F  E  R  S  *  *  G  H  *  S  A  P  V  D  F  N  L  G  R :   F  F  Y  I  *  E  R  R  S  Q  A  P  S  W  W  K  D  *  K  E   : R  *  T  G  D  N  Y  *  K  G  H  Q  K  Q  T  K  E  Y  H  Y  H  Q  G  P  *  N  L  W :   C  *  T  N  *  C  F  E  K  A  W  *  K  V  C  Y  W  S  F  C  G  *   : G  P  D  *  K  G  A  D  R  C  S  R  G  H  I  L  *  H  C  G  L  H  Y  R  N  L  A  R   : C  S  R  V  R  N  I  L  H  R  R  R  K  K  G  S  S  C  I  N  Y  G  D  D  I  P  V  P  S  R  V  F  P  K  Q  M  L  V  A  L  C  S  L  K  F  E  V  R  I  C  V  G  S  I  D  V  A  T  M  V  P  P  S  I  *  Q  I  I  *  K  S  K  E  T  R  R  I  T  *  C  R  P  F  L  V  K  V  H  V  I  N  R  S  D  L  L  E  I  E  A  *  L  C  F  W  H  F  E  H  I  Q  S  P  M  A  F  D  V  K  S  I  L  L  N  Q  K  N  Y  I  C  N  P  T  *  F  M  F  H  M  P  N  *  N  F  I  N  I  P  K  C  E  F  T  F  *  N  F  P  S  F  N  Y  I  H  H  Q  C  I  I  K  L  F  T  H  S  F  N  </first_frame>
            <second_frame>  Y  S  K  G  K  K  T  S  S  F  Y  E  T  I  R  L  Q  V  S  A  N  L  S  E  Q  R  I  G  V  F  S  F  L  *  V  F  A  L  M  A  E  K  L  Q  I  V  E  V  L  Y  C  G  V  C  G  L  P  A  E  Y  C  E  F  G  S  E  F  E  K  C  K  P  W  L  I  Q  N  A  P  D  L  Y  P  D  L  V  K   : D  S  N  L  K  E  A  D  K  V  T  D  Q  L  Q  S  T  S  I  S  E   : G  S  S  T  S  K  K  E  E  V  K  R  L  P  G  G  K  I  K  K  K  :  D  K  Q  E  I  I  I  E  K  V  T  R  N  R  R  K  S  I  T  T  I  K  G  L  E  I  F   : G  V  K  L  T  D  A  S  K  K  L  G  K  K  F  A  T  G  A  S  V  V  K  :  G  P  T  E  K  E  Q  I  D  V  Q  G  D  I  S  Y  D  I  V  D  F  I  T  E  T  W  P  D  :  V  P  E  S  A  I  F  F  I  E  D  G  K  K  V  P  A  A  *  T  T  E  M  T  S  L  F  P  A  E  C  F  P  S  K  C  S  *  H  C  V  R  *  N  L  R  *  E  Y  V  L  A  L  *  M  W  L  L  W  F  H  P  L  Y  S  K  *  Y  K  K  A  K  K  H  V  V  S  H  N  V  V  H  S  W  *  R  F  M  *  S  I  D  Q  T  C  L  R  *  R  R  S  C  V  F  G  I  L  S  T  S  N  H  Q  W  L  L  M  *  S  Q  F  C  *  T  K  K  I  T  F  V  T  P  P  S  L  C  F  T  C  L  I  K  I  L  L  T  F  L  S  V  N  L  H  S  K  I  S  Q  V  S  I  I  Y  T  I  N  A  *  *  N  F  L  L  I  P  S  I </second_frame>
            <third_frame>   T  L  R  G  K  R  R  R  R  F  T  R  R  F  V  F  K  F  Q  R  I  Y  R  S  N  E  S  E  F  F  L  F  F  E  F  L  L  *  W  R  K  S  F  K  *  L  R  F  Y  I  V  E  F  A  V  Y  L  L  S  I  V  N  S  D  P  N  L  R  N  A  N  P  G  *  S  K  M  H  P  I  S  T  R  T  L  L  K  :  I  L  I  *  K  K  L  I  R  S  L  I  S  S  S  R  L  Q  S  R  K  :  V  L  L  H  L  R  K  K  K  S  S  A  F  L  V  E  R  L  K  R  K :   I  N  R  R  *  L  L  K  R  S  P  E  T  D  E  R  V  S  L  P  S  R  A  L  K  S  L  :  V  L  N  *  L  M  L  R  K  S  L  V  K  S  L  L  L  E  L  L  W  L  R :   A  R  L  K  R  S  R  S  M  F  K  G  T  Y  P  M  T  L  W  T  S  L  Q  K  P  G  Q  M :   F  Q  S  P  Q  Y  S  S  *  K  T  E  K  R  F  Q  L  H  K  L  R  R  *  H  P  C  S  Q  Q  S  V  S  Q  A  N  A  R  S  T  V  F  V  E  I  *  G  E  N  M  C  W  L  Y  R  C  G  Y  Y  G  S  T  L  Y  I  A  N  N  I  K  K  Q  R  N  T  S  Y  H  I  M  S  S  I  L  G  E  G  S  C  N  Q  S  I  R  L  A  *  D  R  G  V  V  V  F  L  A  F  *  A  H  P  I  T  N  G  F  *  C  E  V  N  F  V  E  P  K  K  L  H  L  *  P  H  L  V  Y  V  S  H  A  *  L  K  F  Y  *  H  S  *  V  *  I  Y  I  L  K  F  P  K  F  Q  L  Y  T  P  S  M  H  N  K  T  F  Y  S  F  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24108" stop="24267"/>
                    <exon start="24404" stop="24466"/>
                    <exon start="26641" stop="26702"/>
                    <exon start="28157" stop="28238"/>
                    <exon start="28334" stop="28401"/>
                    <exon start="28479" stop="28562"/>
                    <exon start="28638" stop="28694"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFALMAEKLQIVEVLYCGVCGLPAEYCEFGSEFEKCKPWLIQNAPDLYPDLVKDSNLKEADKVTDQLQSTSISEGSSTSKKEEVKRLPGGKIKKKDKQEIIIEKVTRNRRKSITTIKGLEIFGVKLTDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVDFITETWPDVPESAIFFIEDGKKVPAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24005" e_stop="24267"/>
            <exon e_start="24404" e_stop="24466"/>
            <exon e_start="26641" e_stop="27105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="24005" e_stop="24267" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24268" i_stop="24403" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24404" e_stop="24466" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="24467" i_stop="26640" i_length="2174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26641" e_stop="27105" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24005" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="26702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24200" stop="24267"/>
              <exon start="24404" stop="24466"/>
              <exon start="26641" stop="27105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACTCTAAGGGGAAAAAGACGTCGTCGTTTTACGAGACGATTCGTCTTCAAGTTTCAGCGAATTTATCGGAGCAACGAATCGGAGTTTTTTCTTTTCTTTGAGTTTTTGCTTTAATGGCGGAAAAGCTTCAAATAGTTGAGGTTCTATATTGTGGAGTTTGCGGTTTACCTGCTGAGTATTGTGAATTCGGATCCGAATTTGAGAAATGCAAACCCTGGTTGATCCAAAATGCACCCGATCTCTACCCGGACCTTGTTAAAG : ATTCTAATTTGAAAGAAGCTGATAAGGTCACTGATCAGCTCCAGTCGACTTCAATCTCGGAAG : GTTCTTCTACATCTAAGAAAGAAGAAGTCAAGCGCCTTCCTGGTGGAAAGATTAAAAAGAAAGTAAGAAATTTCCAGCATTTGTCGTTTTGTCTAATGTATATTAATCCTTCTTTCAAAATGGCATGGCTCTGTGCCATCCATGTGATATTATAAGCTCTAAGAAAATTTGATAAGTGAAGTTCTTGTAATCCTCCCATTGTATTCATGTACTAAAACTTTTCATTATTGTTCCCTGTAAGCCATCATCTTAAGATTTTAATTTGACCAACATATTATGAATCAGGATCATTCTAATTGAAAAGTTTCTCTCTTTTGCTTTGAGATATTAAGTTACAAATCTTGGTTATATCATTTATATTCAAATATTGGATGGATACTATTCACCTAGTTGAACTAACTTGAAGCTGTTATATTTTGTATGGGTTTTCCCTGCAATGTGAATATGCAAGCGTCCTAAGTAGTT</gDNA_template>
            <first_frame> I  L  *  G  E  K  D  V  V  V  L  R  D  D  S  S  S  S  F  S  E  F  I  G  A  T  N  R  S  F  F  F  S  L  S  F  C  F  N  G  G  K  A  S  N  S  *  G  S  I  L  W  S  L  R  F  T  C  *  V  L  *  I  R  I  R  I  *  E  M  Q  T  L  V  D  P  K  C  T  R  S  L  P  G  P  C  *  R :   F  *  F  E  R  S  *  *  G  H  *  S  A  P  V  D  F  N  L  G  R :   F  F  Y  I  *  E  R  R  S  Q  A  P  S  W  W  K  D  *  K  E  S  K  K  F  P  A  F  V  V  L  S  N  V  Y  *  S  F  F  Q  N  G  M  A  L  C  H  P  C  D  I  I  S  S  K  K  I  *  *  V  K  F  L  *  S  S  H  C  I  H  V  L  K  L  F  I  I  V  P  C  K  P  S  S  *  D  F  N  L  T  N  I  L  *  I  R  I  I  L  I  E  K  F  L  S  F  A  L  R  Y  *  V  T  N  L  G  Y  I  I  Y  I  Q  I  L  D  G  Y  Y  S  P  S  *  T  N  L  K  L  L  Y  F  V  W  V  F  P  A  M  *  I  C  K  R  P  K  *   </first_frame>
            <second_frame>  Y  S  K  G  K  K  T  S  S  F  Y  E  T  I  R  L  Q  V  S  A  N  L  S  E  Q  R  I  G  V  F  S  F  L  *  V  F  A  L  M  A  E  K  L  Q  I  V  E  V  L  Y  C  G  V  C  G  L  P  A  E  Y  C  E  F  G  S  E  F  E  K  C  K  P  W  L  I  Q  N  A  P  D  L  Y  P  D  L  V  K   : D  S  N  L  K  E  A  D  K  V  T  D  Q  L  Q  S  T  S  I  S  E   : G  S  S  T  S  K  K  E  E  V  K  R  L  P  G  G  K  I  K  K  K  V  R  N  F  Q  H  L  S  F  C  L  M  Y  I  N  P  S  F  K  M  A  W  L  C  A  I  H  V  I  L  *  A  L  R  K  F  D  K  *  S  S  C  N  P  P  I  V  F  M  Y  *  N  F  S  L  L  F  P  V  S  H  H  L  K  I  L  I  *  P  T  Y  Y  E  S  G  S  F  *  L  K  S  F  S  L  L  L  *  D  I  K  L  Q  I  L  V  I  S  F  I  F  K  Y  W  M  D  T  I  H  L  V  E  L  T  *  S  C  Y  I  L  Y  G  F  S  L  Q  C  E  Y  A  S  V  L  S  S  </second_frame>
            <third_frame>   T  L  R  G  K  R  R  R  R  F  T  R  R  F  V  F  K  F  Q  R  I  Y  R  S  N  E  S  E  F  F  L  F  F  E  F  L  L  *  W  R  K  S  F  K  *  L  R  F  Y  I  V  E  F  A  V  Y  L  L  S  I  V  N  S  D  P  N  L  R  N  A  N  P  G  *  S  K  M  H  P  I  S  T  R  T  L  L  K  :  I  L  I  *  K  K  L  I  R  S  L  I  S  S  S  R  L  Q  S  R  K  :  V  L  L  H  L  R  K  K  K  S  S  A  F  L  V  E  R  L  K  R  K  *  E  I  S  S  I  C  R  F  V  *  C  I  L  I  L  L  S  K  W  H  G  S  V  P  S  M  *  Y  Y  K  L  *  E  N  L  I  S  E  V  L  V  I  L  P  L  Y  S  C  T  K  T  F  H  Y  C  S  L  *  A  I  I  L  R  F  *  F  D  Q  H  I  M  N  Q  D  H  S  N  *  K  V  S  L  F  C  F  E  I  L  S  Y  K  S  W  L  Y  H  L  Y  S  N  I  G  W  I  L  F  T  *  L  N  *  L  E  A  V  I  F  C  M  G  F  P  C  N  V  N  M  Q  A  S  *  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24108" stop="24267"/>
                    <exon start="24404" stop="24466"/>
                    <exon start="26641" stop="26795"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFALMAEKLQIVEVLYCGVCGLPAEYCEFGSEFEKCKPWLIQNAPDLYPDLVKDSNLKEADKVTDQLQSTSISEGSSTSKKEEVKRLPGGKIKKKVRNFQHLSFCLMYINPSFKMAWLCAIHVIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="30191" PGL_stop="33236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30191" e_stop="30257"/>
            <exon e_start="31294" e_stop="31692"/>
            <exon e_start="32287" e_stop="32467"/>
            <exon e_start="32567" e_stop="32655"/>
            <exon e_start="32748" e_stop="32835"/>
            <exon e_start="32941" e_stop="33236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.731" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.785" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30191" e_stop="30257" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.731" acc_prob="0.989">
            <gDNA_intron_boundary i_start="30258" i_stop="31293" i_length="1036"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31294" e_stop="31692" e_length="399"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31693" i_stop="32286" i_length="594"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32287" e_stop="32467" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.897">
            <gDNA_intron_boundary i_start="32468" i_stop="32566" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32567" e_stop="32655" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.946" acc_prob="0.994">
            <gDNA_intron_boundary i_start="32656" i_stop="32747" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32748" e_stop="32835" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.785" acc_prob="0.969">
            <gDNA_intron_boundary i_start="32836" i_stop="32940" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="32941" e_stop="33236" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30191" stop="30257"/>
              <exon start="31294" stop="31692"/>
              <exon start="32287" stop="32467"/>
              <exon start="32567" stop="32655"/>
              <exon start="32748" stop="32835"/>
              <exon start="32941" stop="33236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTTGAAGAAAAAAAAGGGTTGGGATTTTATTTTCTCATCTTTACAACTTTTTGTGATATTTGAG : GTTATAAGGCTTTTTTAGTATCTTGCTAAAAAGAACTTGGGAGATGACTGTTCGATCGAATAGCTTTAAAGGAACACATTTGGAAACTATTATACAATCGAATAATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATG : GTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCT : ATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTACTG : GTTGGATGTTGGAGACGGGAAAGAGATAAATCTCGAGAAGTGTCCTAGGTTCAATCTGCAGCATCAATGCATCAAGTATCTAGGACCT : AAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTATAAACAAAACGGTGTCTTTGTGGAGACAGTAGAGGGTTCAAAATGGATCTTTGTTCTTAGCACAACAAGAACATTGTACGTAGGAAAAAAGAAGAAAGGTGTGTTTCAACACTCGAGTTTCCTATCGGGTGGTGCAACTACTGCTGCTGGTAGACTCGTTGCTCATGGTGGCGTTTTGAAGGCTATTTGGCCATACAGCGGACACTATCACCCCACGGAAGAGAACTTCCGGGAATTCATTAGTTT</gDNA_template>
            <first_frame> S  F  E  E  K  K  G  L  G  F  Y  F  L  I  F  T  T  F  C  D  I  *   : G  Y  K  A  F  L  V  S  C  *  K  E  L  G  R  *  L  F  D  R  I  A  L  K  E  H  I  W  K  L  L  Y  N  R  I  M  K  S  I  R  *  Q  G  R  I  R  *  I  *  G  T  V  I  Q  R  N  *  C  *  R  P  H  Y  H  S  R  I  W  F  K  T  *  I  Y  Q  N  G  T  K  K  R  R  E  Q  Q  F  H  Y  P  S  L  R  F  C  F  L  H  D  L  L  V  S  L  M  L  L  L  L  S  F  R  K  C  I  R  V  I  G  Q  E  E  I  L  Q  I  V  L  L  W  L  K  N  Y   : G  G  R  L  W  I  S  Q  L  S  N  G  V  L  F  R  S  S  T  W  R  N  R  K  L  L  Y  R  G  G  L  E  H  V  H  E  L  P  K  L  V  K  D  C  Q  K  M  K  K  L  R  N  L  L  C  S  I  G  *  K  L :   L  I  H  D  T  G  M  V  T  T  Y  T  S  T  T  I  Y  G  S  K  V  K  A  L  N  L  S  S  T   : G  W  M  L  E  T  G  K  R  *  I  S  R  S  V  L  G  S  I  C  S  I  N  A  S  S  I  *  D  L :   K  N  V  N  R  M  K  *  L  F  R  T  G  N  L  S  I  N  K  T  V  S  L  W  R  Q  *  R  V  Q  N  G  S  L  F  L  A  Q  Q  E  H  C  T  *  E  K  R  R  K  V  C  F  N  T  R  V  S  Y  R  V  V  Q  L  L  L  L  V  D  S  L  L  M  V  A  F  *  R  L  F  G  H  T  A  D  T  I  T  P  R  K  R  T  S  G  N  S  L  V  </first_frame>
            <second_frame>  H  L  K  K  K  K  G  W  D  F  I  F  S  S  L  Q  L  F  V  I  F  E  :  V  I  R  L  F  *  Y  L  A  K  K  N  L  G  D  D  C  S  I  E  *  L  *  R  N  T  F  G  N  Y  Y  T  I  E  *  *  S  R  *  D  D  K  E  E  F  D  K  F  K  E  L  *  S  K  E  T  D  V  R  D  H  I  I  I  Q  E  S  G  S  R  L  R  Y  I  R  M  E  R  K  K  D  E  S  N  S  F  I  T  R  A  F  D  S  V  F  S  T  T  C  *  *  A  *  C  C  C  C  *  A  S  E  S  V  *  E  L  *  D  K  K  K  S  C  R  L  C  C  C  G  *  R  T  M  :  V  E  G  F  G  F  R  S  S  Q  T  E  F  C  F  V  L  Q  R  G  E  T  G  N  C  C  I  A  V  G  *  S  T  Y  T  S  C  Q  S  W  *  R  I  V  K  R  *  K  S  S  E  T  C  S  A  A  L  A  R  S   : Y  *  S  T  T  P  V  W  S  Q  L  T  L  L  L  R  Y  M  V  R  K  *  K  L  S  T  F  L  L  L  :  V  G  C  W  R  R  E  R  D  K  S  R  E  V  S  *  V  Q  S  A  A  S  M  H  Q  V  S  R  T   : *  R  T  *  I  V  *  S  S  Y  S  G  R  E  T  C  L  *  T  K  R  C  L  C  G  D  S  R  G  F  K  M  D  L  C  S  *  H  N  K  N  I  V  R  R  K  K  E  E  R  C  V  S  T  L  E  F  P  I  G  W  C  N  Y  C  C  W  *  T  R  C  S  W  W  R  F  E  G  Y  L  A  I  Q  R  T  L  S  P  H  G  R  E  L  P  G  I  H  *  F </second_frame>
            <third_frame>   I  *  R  K  K  R  V  G  I  L  F  S  H  L  Y  N  F  L  *  Y  L  R :   L  *  G  F  F  S  I  L  L  K  R  T  W  E  M  T  V  R  S  N  S  F  K  G  T  H  L  E  T  I  I  Q  S  N  N  E  V  D  K  M  T  R  K  N  S  I  N  L  R  N  C  D  P  K  K  L  M  L  E  T  T  L  S  F  K  N  L  V  Q  D  L  D  I  S  E  W  N  E  K  K  T  R  A  T  V  S  L  P  E  P  S  I  L  F  S  P  R  P  V  S  E  L  D  A  A  A  V  K  L  Q  K  V  Y  K  S  Y  R  T  R  R  N  L  A  D  C  A  V  V  V  E  E  L  W :   W  K  A  L  D  F  A  A  L  K  R  S  S  V  S  F  F  N  V  E  K  P  E  T  A  V  S  R  W  A  R  A  R  T  R  A  A  K  V  G  K  G  L  S  K  D  E  K  A  Q  K  L  A  L  Q  H  W  L  E  A  :  I  D  P  R  H  R  Y  G  H  N  L  H  F  Y  Y  D  I  W  F  E  S  E  S  S  Q  P  F  F  Y  W :   L  D  V  G  D  G  K  E  I  N  L  E  K  C  P  R  F  N  L  Q  H  Q  C  I  K  Y  L  G  P  :  K  E  R  E  S  Y  E  V  V  I  Q  D  G  K  L  V  Y  K  Q  N  G  V  F  V  E  T  V  E  G  S  K  W  I  F  V  L  S  T  T  R  T  L  Y  V  G  K  K  K  K  G  V  F  Q  H  S  S  F  L  S  G  G  A  T  T  A  A  G  R  L  V  A  H  G  G  V  L  K  A  I  W  P  Y  S  G  H  Y  H  P  T  E  E  N  F  R  E  F  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31301" stop="31692"/>
                    <exon start="32287" stop="32467"/>
                    <exon start="32567" stop="32655"/>
                    <exon start="32748" stop="32835"/>
                    <exon start="32941" stop="33234"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFFSILLKRTWEMTVRSNSFKGTHLETIIQSNNEVDKMTRKNSINLRNCDPKKLMLETTLSFKNLVQDLDISEWNEKKTRATVSLPEPSILFSPRPVSELDAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDFAALKRSSVSFFNVEKPETAVSRWARARTRAAKVGKGLSKDEKAQKLALQHWLEAIDPRHRYGHNLHFYYDIWFESESSQPFFYWLDVGDGKEINLEKCPRFNLQHQCIKYLGPKERESYEVVIQDGKLVYKQNGVFVETVEGSKWIFVLSTTRTLYVGKKKKGVFQHSSFLSGGATTAAGRLVAHGGVLKAIWPYSGHYHPTEENFREFIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="44526" PGL_stop="35899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44526" e_stop="44351"/>
            <exon e_start="44274" e_stop="43890"/>
            <exon e_start="42511" e_stop="42431"/>
            <exon e_start="41671" e_stop="41598"/>
            <exon e_start="41515" e_stop="41440"/>
            <exon e_start="41228" e_stop="41161"/>
            <exon e_start="40388" e_stop="40265"/>
            <exon e_start="40083" e_stop="39997"/>
            <exon e_start="39270" e_stop="39202"/>
            <exon e_start="39118" e_stop="38982"/>
            <exon e_start="38285" e_stop="38204"/>
            <exon e_start="38081" e_stop="38061"/>
            <exon e_start="37892" e_stop="37830"/>
            <exon e_start="36853" e_stop="36806"/>
            <exon e_start="36673" e_stop="36611"/>
            <exon e_start="36440" e_stop="36387"/>
            <exon e_start="36293" e_stop="35899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.825" acc_prob="0.969" e_score="0.986"/>
          <exon-intron don_prob="0.991" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.761" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.669" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.215" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.545" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.099" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44526" e_stop="44351" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.969">
            <gDNA_intron_boundary i_start="44350" i_stop="44275" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44274" e_stop="43890" e_length="385"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="43889" i_stop="42512" i_length="1378"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42511" e_stop="42431" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.881">
            <gDNA_intron_boundary i_start="42430" i_stop="41672" i_length="759"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="41671" e_stop="41598" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.825" acc_prob="0.969">
            <gDNA_intron_boundary i_start="41597" i_stop="41516" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41515" e_stop="41440" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.906">
            <gDNA_intron_boundary i_start="41439" i_stop="41229" i_length="211"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41228" e_stop="41161" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.899" acc_prob="0.926">
            <gDNA_intron_boundary i_start="41160" i_stop="40389" i_length="772"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40388" e_stop="40265" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.761">
            <gDNA_intron_boundary i_start="40264" i_stop="40084" i_length="181"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40083" e_stop="39997" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.883" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39996" i_stop="39271" i_length="726"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="39270" e_stop="39202" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.764">
            <gDNA_intron_boundary i_start="39201" i_stop="39119" i_length="83"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="39118" e_stop="38982" e_length="137"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.669">
            <gDNA_intron_boundary i_start="38981" i_stop="38286" i_length="696"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="38285" e_stop="38204" e_length="82"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.215">
            <gDNA_intron_boundary i_start="38203" i_stop="38082" i_length="122"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="38081" e_stop="38061" e_length="21"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.545">
            <gDNA_intron_boundary i_start="38060" i_stop="37893" i_length="168"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="37892" e_stop="37830" e_length="63"/>
          </exon>
          <intron i_serial="13" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37829" i_stop="36854" i_length="976"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="36853" e_stop="36806" e_length="48"/>
          </exon>
          <intron i_serial="14" don_prob="0.991" acc_prob="0.099">
            <gDNA_intron_boundary i_start="36805" i_stop="36674" i_length="132"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="36673" e_stop="36611" e_length="63"/>
          </exon>
          <intron i_serial="15" don_prob="0.937" acc_prob="0.959">
            <gDNA_intron_boundary i_start="36610" i_stop="36441" i_length="170"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="36440" e_stop="36387" e_length="54"/>
          </exon>
          <intron i_serial="16" don_prob="0.997" acc_prob="0.952">
            <gDNA_intron_boundary i_start="36386" i_stop="36294" i_length="93"/>
          </intron>
          <exon e_serial="17" e_score="0.922">
            <gDNA_exon_boundary e_start="36293" e_stop="35899" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44526" stop="44351"/>
              <exon start="44274" stop="43890"/>
              <exon start="42511" stop="42431"/>
              <exon start="41671" stop="41598"/>
              <exon start="41515" stop="41440"/>
              <exon start="41228" stop="41161"/>
              <exon start="40388" stop="40265"/>
              <exon start="40083" stop="39997"/>
              <exon start="39270" stop="39202"/>
              <exon start="39118" stop="38982"/>
              <exon start="38285" stop="38204"/>
              <exon start="38081" stop="38061"/>
              <exon start="37892" stop="37830"/>
              <exon start="36853" stop="36806"/>
              <exon start="36673" stop="36611"/>
              <exon start="36440" stop="36387"/>
              <exon start="36293" stop="35955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36853" stop="36806"/>
              <exon start="36673" stop="36611"/>
              <exon start="36440" stop="36387"/>
              <exon start="36293" stop="35899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337212" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACGAGATACTTGTTCTGGATTTTCGTTGATAAAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCG : ACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAG : AGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGAAG : TATGGCTTGTTAATTGGGTCAGGCTTCTGGAGTAGTTCAACATCAGTAAGAGATTGGCCACTTCTGATGTGCTG : TCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACAT : GTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAG : GTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAG : GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAG : GGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAG : TATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTG : GTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAG : TATTGGAGACTTTGGAATATG : CCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAG : GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAG : CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAG : ATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAAT : GTGGGCAACATGACATTCTGGTGCTTTTTCTGCATTGTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTCGATCATTTTGTTGGACCGCGACTCACTAGTGAGTATCGCAGTTTTGAACTATCTGATGCTTTACTTATATGCTTGAAATGGAGAAAATTCTTTTCTAAAATTTGACACCAAGGAATTGAACAGAATTGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATCATTTTTTGTTGAGGTAAAATGTAATAAGCTCAAATTAGTGATAGTGTTCTAATTTCGAATTTTCCCTATTTACTATTTGACATGCATTATCGTTATATACATTA</gDNA_template>
            <first_frame> H  E  I  L  V  L  D  F  R  *  *  R  N  F  *  T  A  M  V  *  I  Q  Q  T  N  K  Q  I  L  L  Q  I  S  I  F  M  A  A  G  S  S  T  R  I  F  L  C  I  L  Q  Q  L  L  L  *  S  Q  I  R :   L  D  T  M  T  I  N  P  E  S  I  T  S  S  S  D  G  N  N  N  L  R  R  R  R  S  G  G  G  G  G  D  R  S  V  N  D  V  T  E  L  D  S  S  S  V  D  A  S  S  S  S  D  D  V  T  S  D  V  M  D  G  S  G  N  G  G  L  D  R  V  S  E  A  V  S  T  T  I  G  K  I  S  D  G  D  G  I  Q  E  E  Q  R  K  A  N  E  T  T  P  L  K  Y  V  Y  R  A  S  A  P  A  H  R  R  N  K  E  S  P  L  S  S  A  A  I  F  K  Q  :  S  H  A  G  L  L  N  L  C  I  V  V  L  I  A  V  N  S  R  L  I  I  E  N  L  M  K  :  Y  G  L  L  I  G  S  G  F  W  S  S  S  T  S  V  R  D  W  P  L  L  M  C  C :   L  S  L  P  I  F  P  L  A  A  F  L  V  E  K  M  A  Q  K  K  Y  M  T  E  H  :  V  V  V  T  L  H  I  I  I  T  T  A  S  I  L  Y  P  V  L  V  I  L  R :   C  D  S  A  F  L  S  G  V  T  L  M  M  F  A  C  I  V  W  M  K  L  V  S  Y  A  H  T  N  Y  D  M  R  Q  L  A  K  S  V  N  E  :  G  E  N  S  E  I  N  Y  S  Y  N  V  S  F  E  S  L  A  Y  F  M  V  A  P  T  L  C  Y  Q  :  G  W  L  A  R  Q  L  I  K  L  V  I  F  T  G  L  M  G  F  I  I  E  Q  :  Y  I  N  P  I  V  R  S  S  R  H  P  F  E  G  N  L  L  Y  A  I  E  R  V  L  K  L  S  V  P  I  L  Y  V  W  L  C  M  F  Y  S  L  F  H  L  W :   L  N  I  L  A  E  V  L  R  F  G  D  R  E  F  Y  K  D  W  W  N  A  K  T  I  D  E  :  Y  W  R  L  W  N  M  :  P  V  H  K  W  M  V  R  H  I  Y  F  P  C  L  R  N  G  I  P  K  :  G  V  A  M  V  I  S  F  F  I  S  A  V  F  H  E  :  L  C  I  A  V  P  C  R  L  F  K  F  W  A  F  L  G  I  M  F  Q  :  I  P  L  V  I  L  T  N  F  L  Q  N  K  F  K  N  S  N  :  V  G  N  M  T  F  W  C  F  F  C  I  V  G  Q  P  M  C  V  L  L  Y  Y  H  D  V  M  N  R  N  G  S  S  S  *  S  F  I  V  D  H  F  V  G  P  R  L  T  S  E  Y  R  S  F  E  L  S  D  A  L  L  I  C  L  K  W  R  K  F  F  S  K  I  *  H  Q  G  I  E  Q  N  C  C  F  V  L  Y  L  S  F  D  I  *  E  M  Y  I  I  F  C  *  G  K  M  *  *  A  Q  I  S  D  S  V  L  I  S  N  F  P  Y  L  L  F  D  M  H  Y  R  Y  I  H   </first_frame>
            <second_frame>  T  R  Y  L  F  W  I  F  V  D  K  E  T  S  K  R  L  W  C  E  F  N  K  Q  I  N  K  S  F  C  K  S  Q  F  S  W  R  R  E  A  L  H  V  F  S  F  V  Y  F  N  N  C  F  Y  R  V  K  F   : D  L  I  R  *  R  S  I  R  R  V  L  H  R  Q  A  T  A  I  T  T  S  E  G  G  V  A  A  A  A  A  V  I  D  L  *  M  M  *  R  S  W  I  R  A  L  W  M  L  R  V  A  R  M  M  *  R  V  T  S  W  M  E  V  E  T  E  D  W  I  G  *  V  R  L  *  V  R  R  L  G  R  L  V  M  E  M  E  F  R  R  S  R  G  K  R  M  K  R  R  R  *  S  M  F  I  E  R  R  H  R  L  T  G  G  T  R  K  V  L  L  V  R  P  L  F  S  N  R :   V  M  L  A  Y  S  I  S  V  *  W  C  L  L  P  *  T  A  G  *  L  L  R  I  *  *  S :   M  A  C  *  L  G  Q  A  S  G  V  V  Q  H  Q  *  E  I  G  H  F  *  C  A   : V  L  V  F  R  F  S  L  L  L  L  F  L  S  R  K  W  H  R  R  S  I  *  L  N  M :   *  L  S  L  F  T  *  L  *  R  Q  L  P  F  C  I  Q  F  W  S  S  S   : G  V  I  L  L  F  Y  R  V  S  H  *  *  C  L  L  A  L  C  G  *  N  *  F  L  M  H  I  Q  I  M  I  *  D  S  L  Q  S  L  *  M  R :   V  R  I  P  K  S  T  T  L  T  M  L  V  S  R  V  W  L  T  S  W  L  L  Q  L  Y  A  I  R :   V  G  W  P  A  N  S  S  S  W  *  F  L  Q  D  *  W  D  L  S  L  S  S :   I  L  T  R  L  C  E  A  H  D  I  H  L  K  E  T  F  Y  T  P  S  R  G  Y  *  S  F  Q  F  Q  F  Y  M  S  G  S  A  C  S  T  A  S  F  I  F   : G  *  I  Y  L  R  K  F  C  D  L  G  I  V  S  S  I  K  I  G  G  T  Q  K  Q  L  M  S :   I  G  D  F  G  I  C :   L  Y  I  S  G  W  F  V  T  S  I  S  H  A  *  E  M  A  Y  L  R :   E  L  Q  W  *  S  L  S  L  Y  L  L  F  S  M  S :   C  V  L  L  F  L  V  G  Y  S  S  F  G  H  S  L  E  S  C  F  R :   F  P  W  S  Y  *  R  T  S  C  K  T  S  S  K  T  R  M :   W  A  T  *  H  S  G  A  F  S  A  L  L  V  N  Q  C  V  C  F  C  I  T  M  M  *  *  I  E  M  V  A  Q  V  K  A  S  S  S  I  I  L  L  D  R  D  S  L  V  S  I  A  V  L  N  Y  L  M  L  Y  L  Y  A  *  N  G  E  N  S  F  L  K  F  D  T  K  E  L  N  R  I  V  A  L  Y  Y  I  F  L  L  I  F  K  K  C  I  S  F  F  V  E  V  K  C  N  K  L  K  L  V  I  V  F  *  F  R  I  F  P  I  Y  Y  L  T  C  I  I  V  I  Y  I  </second_frame>
            <third_frame>   R  D  T  C  S  G  F  S  L  I  K  K  L  L  N  G  Y  G  V  N  S  T  N  K  *  T  N  P  S  A  N  L  N  F  H  G  G  G  K  L  Y  T  Y  F  P  L  Y  T  S  T  I  A  F  I  E  S  N  S  :  T  *  Y  D  D  D  Q  S  G  E  Y  Y  I  V  K  R  R  Q  *  Q  P  P  K  A  A  *  R  R  R  R  R  *  *  I  C  E  *  C  D  G  V  G  F  E  L  C  G  C  F  E  *  L  G  *  C  N  E  *  R  H  G  W  K  W  K  R  R  I  G  *  G  E  *  G  C  E  Y  D  D  W  E  D  *  *  W  R  W  N  S  G  G  A  E  E  S  E  *  N  D  A  V  E  V  C  L  *  S  V  G  T  G  S  P  A  E  Q  G  K  S  S  *  F  G  R  Y  F  Q  T   : E  S  C  W  L  T  Q  S  L  Y  S  G  A  Y  C  R  K  Q  Q  A  D  Y  *  E  F  D  E   : V  W  L  V  N  W  V  R  L  L  E  *  F  N  I  S  K  R  L  A  T  S  D  V  L  :  S  *  S  S  D  F  P  S  C  C  F  S  C  R  E  N  G  T  E  E  V  Y  D  *  T   : C  S  C  H  S  S  H  N  Y  N  D  S  F  H  F  V  S  S  S  G  H  P  Q  :  V  *  F  C  F  S  I  G  C  H  T  D  D  V  C  L  H  C  V  D  E  T  S  F  L  C  T  Y  K  L  *  Y  E  T  A  C  K  V  C  E  *   : G  *  E  F  R  N  Q  L  L  L  Q  C  *  F  R  E  F  G  L  L  H  G  C  S  N  F  M  L  S   : G  L  A  G  P  P  T  H  Q  A  G  N  F  Y  R  I  N  G  I  Y  H  *  A   : V  Y  *  P  D  C  A  K  L  T  T  S  I  *  R  K  P  F  I  R  H  R  E  G  I  E  A  F  S  S  N  F  I  C  L  A  L  H  V  L  Q  P  L  S  S  L  :  V  K  Y  T  C  G  S  S  A  I  W  G  S  *  V  L  *  R  L  V  E  R  K  N  N  *  *   : V  L  E  T  L  E  Y   : A  C  T  *  V  D  G  S  S  H  L  F  P  M  L  K  K  W  H  T  *   : G  S  C  N  G  D  L  F  L  Y  I  C  C  F  P  *   : A  V  Y  C  C  S  L  S  A  I  Q  V  L  G  I  P  W  N  H  V  S   : D  S  L  G  H  T  N  E  L  P  A  K  Q  V  Q  K  L  E   : C  G  Q  H  D  I  L  V  L  F  L  H  C  W  S  T  N  V  C  A  S  V  L  P  *  C  D  E  *  K  W  *  L  K  L  K  L  H  R  R  S  F  C  W  T  A  T  H  *  *  V  S  Q  F  *  T  I  *  C  F  T  Y  M  L  E  M  E  K  I  L  F  *  N  L  T  P  R  N  *  T  E  L  L  L  C  I  I  S  F  F  *  Y  L  R  N  V  Y  H  F  L  L  R  *  N  V  I  S  S  N  *  *  *  C  S  N  F  E  F  S  L  F  T  I  *  H  A  L  S  L  Y  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44361" stop="44351"/>
                    <exon start="44274" stop="43890"/>
                    <exon start="42511" stop="42431"/>
                    <exon start="41671" stop="41598"/>
                    <exon start="41515" stop="41440"/>
                    <exon start="41228" stop="41161"/>
                    <exon start="40388" stop="40265"/>
                    <exon start="40083" stop="39997"/>
                    <exon start="39270" stop="39202"/>
                    <exon start="39118" stop="38982"/>
                    <exon start="38285" stop="38204"/>
                    <exon start="38081" stop="38061"/>
                    <exon start="37892" stop="37830"/>
                    <exon start="36853" stop="36806"/>
                    <exon start="36673" stop="36611"/>
                    <exon start="36440" stop="36387"/>
                    <exon start="36293" stop="36189"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1545</number_coding_nucleotides>
                  <number_encoded_amino_acids>515</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQIRLDTMTINPESITSSSDGNNNLRRRRSGGGGGDRSVNDVTELDSSSVDASSSSDDVTSDVMDGSGNGGLDRVSEAVSTTIGKISDGDGIQEEQRKANETTPLKYVYRASAPAHRRNKESPLSSAAIFKQSHAGLLNLCIVVLIAVNSRLIIENLMKYGLLIGSGFWSSSTSVRDWPLLMCCLSLPIFPLAAFLVEKMAQKKYMTEHVVVTLHIIITTASILYPVLVILRCDSAFLSGVTLMMFACIVWMKLVSYAHTNYDMRQLAKSVNEGENSEINYSYNVSFESLAYFMVAPTLCYQGWLARQLIKLVIFTGLMGFIIEQYINPIVRSSRHPFEGNLLYAIERVLKLSVPILYVWLCMFYSLFHLWLNILAEVLRFGDREFYKDWWNAKTIDEYWRLWNMPVHKWMVRHIYFPCLRNGIPKGVAMVISFFISAVFHELCIAVPCRLFKFWAFLGIMFQIPLVILTNFLQNKFKNSNVGNMTFWCFFCIVGQPMCVLLYYHDVMNRNGSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="49548" PGL_stop="54936"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49548" e_stop="50050"/>
            <exon e_start="50957" e_stop="51128"/>
            <exon e_start="51845" e_stop="51980"/>
            <exon e_start="52093" e_stop="52203"/>
            <exon e_start="52283" e_stop="52385"/>
            <exon e_start="52702" e_stop="52845"/>
            <exon e_start="52942" e_stop="53049"/>
            <exon e_start="53136" e_stop="53232"/>
            <exon e_start="53457" e_stop="53582"/>
            <exon e_start="53796" e_stop="53928"/>
            <exon e_start="54553" e_stop="54936"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.424" acc_prob="0.598" e_score="0.988"/>
          <exon-intron don_prob="0.976" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="0.991"/>
          <exon-intron don_prob="0.949" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="0.979"/>
          <exon-intron don_prob="0.989" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.469" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.705" acc_prob="0.513" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.459" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="49548" e_stop="50050" e_length="503"/>
          </exon>
          <intron i_serial="1" don_prob="0.424" acc_prob="0.598">
            <gDNA_intron_boundary i_start="50051" i_stop="50956" i_length="906"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50957" e_stop="51128" e_length="172"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.994">
            <gDNA_intron_boundary i_start="51129" i_stop="51844" i_length="716"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51845" e_stop="51980" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.924">
            <gDNA_intron_boundary i_start="51981" i_stop="52092" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="52093" e_stop="52203" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="52204" i_stop="52282" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52283" e_stop="52385" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.949" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52386" i_stop="52701" i_length="316"/>
          </intron>
          <exon e_serial="6" e_score="0.979">
            <gDNA_exon_boundary e_start="52702" e_stop="52845" e_length="144"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52846" i_stop="52941" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52942" e_stop="53049" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.838">
            <gDNA_intron_boundary i_start="53050" i_stop="53135" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53136" e_stop="53232" e_length="97"/>
          </exon>
          <intron i_serial="8" don_prob="0.469" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53233" i_stop="53456" i_length="224"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53457" e_stop="53582" e_length="126"/>
          </exon>
          <intron i_serial="9" don_prob="0.705" acc_prob="0.513">
            <gDNA_intron_boundary i_start="53583" i_stop="53795" i_length="213"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="53796" e_stop="53928" e_length="133"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.459">
            <gDNA_intron_boundary i_start="53929" i_stop="54552" i_length="624"/>
          </intron>
          <exon e_serial="11" e_score="0.997">
            <gDNA_exon_boundary e_start="54553" e_stop="54936" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49548" stop="50050"/>
              <exon start="50957" stop="51128"/>
              <exon start="51845" stop="51980"/>
              <exon start="52093" stop="52203"/>
              <exon start="52283" stop="52385"/>
              <exon start="52702" stop="52845"/>
              <exon start="52942" stop="53049"/>
              <exon start="53136" stop="53232"/>
              <exon start="53457" stop="53582"/>
              <exon start="53796" stop="53928"/>
              <exon start="54553" stop="54936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323380" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAACTTATTCTCTCTGTTTTCCTCCATCCAAAAAAAAACAGCAAAATTCCCAAAATCTATATCAAATTAATCTTCAATTCTTGCAAATTTCTTCAAGATTTTTCAGTTTTCGAACACCCAATTGACTAAAATAATGGAAAAAGATCTCAGATTTTGAACATTTTTGAAGAAAAAAGAAGCAAAGAAGCTAAGATAAAAGGGGATATACTTGAAAATGGAGTGTGTTGGAGCTCAAAATGTTGGAGCAATGGCAGTTTTTACGCGTCCGAGATTGAAACCGTTGGTCGGGAGGAGAGTTATGCCAAGAAAAAAGCAATCTTTTTGGCGTATGAGCAGTATGAAAGTAAAATGTAATAGCAGTAGTGGTAGTGACAGTTGTGTAGTTGATAAAGAAGATTTTGCTGATGAAGAAGATTATATAAAAGCCGGTGGTTCGCAACTTGTATTTGTTCAAATGCAGCAGAAAAAAGATATGGATCAGCAGTCTAAGCTTTCTGATGAG : TTACGACAAATATCTGCTGGACAAACCGTACTGGATTTAGTGGTAATCGGCTGTGGTCCTGCTGGTCTTGCTCTTGCCGCGGAGTCAGCTAAATTGGGGTTGAACGTGGGGCTCGTTGGGCCTGATCTTCCTTTCACAAACAACTATGGTGTATGGGAGGACGAGTTCAAAG : ATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTGATGATGATGAACCTATTCTTATTGGCCGTGCCTATGGAAGAGTTAGTCGCCATTTTCTGCACGAGGAGTTACTCAAAAG : GTGTGTGGAGGCAGGTGTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACAAATGGCCAGAGTCTTGTAGAGTGCGAGGGTGATGTTGTGATTCCCTGCAG : GTTTGTGACTGTTGCATCGGGGGCAGCCTCGGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTAGAGTTTCTGTTCAAACAGCTTATGGAGTGGAAGTTGAG : GTTGATAACAATCCATTTGACCCGAGCCTGATGGTTTTCATGGATTATAGAGATTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACATTTCTTTATGCCATGCCCATGTCTCCAACACGAGTCTTTTTCGAG : GAAACTTGTTTGGCTTCAAAAGATGCAATGCCATTCGATCTGTTAAAGAAAAAACTGATGCTACGATTGAACACCCTTGGTGTAAGAATTAAAGAAATTTACGAGGAG : GAATGGTCTTACATACCGGTTGGTGGATCTTTGCCAAATACAGAACAAAAAACACTTGCATTTGGTGCTGCTGCTAGCATGGTTCATCCAGCCACAG : GTTATTCAGTCGTCAGATCACTTTCTGAAGCTCCAAAATGCGCCTCTGTACTTGCAAATATATTACGACAACATTATAGCAAGAACATGCTTACCAGTTCAAGTATCCCGAGTATATCAACTCAAG : CTTGGAACACTCTTTGGCCACAAGAACGAAAACGACAAAGATCGTTTTTCCTATTTGGACTGGCTCTGATATTGCAGCTGGATATTGAGGGGATAAGGTCATTTTTCCGCGCATTCTTCCGTGTGCCAAAATG : GATGTGGCAGGGATTTCTTGGTTCAAGTCTTTCTTCAGCAGACCTCATGTTATTTGCCTTCTACATGTTTATTATTGCACCAAATGACATGAGAAAAGGCTTGATCAGACATCTTTTATCTGATCCTACTGGTGCAACATTGATAAGAACTTATCTTACATTTTAGAGTAAACTCCTCCTACAATAATTGTTGAATCAGAGGCCTCATTACTTCAGATTCATAACAGAAATCGCGGTCTCTCGAGGCATTGTATATAACATTTTCACTAGCTTAATATGCTTGAATAAGTTGCATAGTTTCAGTTTTTGTATCTGCTTCTTTTTTTGTCCTAGATCATGTATTGATCCAATCTATATACATTGCCAATATATATAAATTTTACA</gDNA_template>
            <first_frame> I  T  Y  S  L  C  F  P  P  S  K  K  K  Q  Q  N  S  Q  N  L  Y  Q  I  N  L  Q  F  L  Q  I  S  S  R  F  F  S  F  R  T  P  N  *  L  K  *  W  K  K  I  S  D  F  E  H  F  *  R  K  K  K  Q  R  S  *  D  K  R  G  Y  T  *  K  W  S  V  L  E  L  K  M  L  E  Q  W  Q  F  L  R  V  R  D  *  N  R  W  S  G  G  E  L  C  Q  E  K  S  N  L  F  G  V  *  A  V  *  K  *  N  V  I  A  V  V  V  V  T  V  V  *  L  I  K  K  I  L  L  M  K  K  I  I  *  K  P  V  V  R  N  L  Y  L  F  K  C  S  R  K  K  I  W  I  S  S  L  S  F  L  M  S :   Y  D  K  Y  L  L  D  K  P  Y  W  I  *  W  *  S  A  V  V  L  L  V  L  L  L  P  R  S  Q  L  N  W  G  *  T  W  G  S  L  G  L  I  F  L  S  Q  T  T  M  V  Y  G  R  T  S  S  K  :  I  L  V  F  K  P  A  L  N  M  F  G  G  I  P  L  Y  I  L  M  M  M  N  L  F  L  L  A  V  P  M  E  E  L  V  A  I  F  C  T  R  S  Y  S  K   : G  V  W  R  Q  V  F  C  I  *  T  R  K  W  I  G  L  L  R  P  Q  M  A  R  V  L  *  S  A  R  V  M  L  *  F  P  A   : G  L  *  L  L  H  R  G  Q  P  R  G  N  S  C  S  M  S  W  E  V  L  E  F  L  F  K  Q  L  M  E  W  K  L  R :   L  I  T  I  H  L  T  R  A  *  W  F  S  W  I  I  E  I  M  S  D  T  T  L  N  L  *  K  L  N  I  Q  H  F  F  M  P  C  P  C  L  Q  H  E  S  F  S  R :   K  L  V  W  L  Q  K  M  Q  C  H  S  I  C  *  R  K  N  *  C  Y  D  *  T  P  L  V  *  E  L  K  K  F  T  R  R :   N  G  L  T  Y  R  L  V  D  L  C  Q  I  Q  N  K  K  H  L  H  L  V  L  L  L  A  W  F  I  Q  P  Q  :  V  I  Q  S  S  D  H  F  L  K  L  Q  N  A  P  L  Y  L  Q  I  Y  Y  D  N  I  I  A  R  T  C  L  P  V  Q  V  S  R  V  Y  Q  L  K  :  L  G  T  L  F  G  H  K  N  E  N  D  K  D  R  F  S  Y  L  D  W  L  *  Y  C  S  W  I  L  R  G  *  G  H  F  S  A  H  S  S  V  C  Q  N   : G  C  G  R  D  F  L  V  Q  V  F  L  Q  Q  T  S  C  Y  L  P  S  T  C  L  L  L  H  Q  M  T  *  E  K  A  *  S  D  I  F  Y  L  I  L  L  V  Q  H  *  *  E  L  I  L  H  F  R  V  N  S  S  Y  N  N  C  *  I  R  G  L  I  T  S  D  S  *  Q  K  S  R  S  L  E  A  L  Y  I  T  F  S  L  A  *  Y  A  *  I  S  C  I  V  S  V  F  V  S  A  S  F  F  V  L  D  H  V  L  I  Q  S  I  Y  I  A  N  I  Y  K  F  Y  </first_frame>
            <second_frame>  *  L  I  L  S  V  F  L  H  P  K  K  N  S  K  I  P  K  I  Y  I  K  L  I  F  N  S  C  K  F  L  Q  D  F  S  V  F  E  H  P  I  D  *  N  N  G  K  R  S  Q  I  L  N  I  F  E  E  K  R  S  K  E  A  K  I  K  G  D  I  L  E  N  G  V  C  W  S  S  K  C  W  S  N  G  S  F  Y  A  S  E  I  E  T  V  G  R  E  E  S  Y  A  K  K  K  A  I  F  L  A  Y  E  Q  Y  E  S  K  M  *  *  Q  *  W  *  *  Q  L  C  S  *  *  R  R  F  C  *  *  R  R  L  Y  K  S  R  W  F  A  T  C  I  C  S  N  A  A  E  K  R  Y  G  S  A  V  *  A  F  *  *   : V  T  T  N  I  C  W  T  N  R  T  G  F  S  G  N  R  L  W  S  C  W  S  C  S  C  R  G  V  S  *  I  G  V  E  R  G  A  R  W  A  *  S  S  F  H  K  Q  L  W  C  M  G  G  R  V  Q  R :   S  W  S  S  S  L  H  *  T  C  L  A  G  Y  H  C  I  S  *  *  *  *  T  Y  S  Y  W  P  C  L  W  K  S  *  S  P  F  S  A  R  G  V  T  Q  K  :  V  C  G  G  R  C  F  V  S  K  L  E  S  G  *  D  C  *  G  H  K  W  P  E  S  C  R  V  R  G  *  C  C  D  S  L  Q  :  V  C  D  C  C  I  G  G  S  L  G  E  I  L  A  V  *  V  G  R  S  *  S  F  C  S  N  S  L  W  S  G  S  *   : G  *  *  Q  S  I  *  P  E  P  D  G  F  H  G  L  *  R  L  C  Q  T  R  R  S  I  F  R  S  *  I  S  N  I  S  L  C  H  A  H  V  S  N  T  S  L  F  R   : G  N  L  F  G  F  K  R  C  N  A  I  R  S  V  K  E  K  T  D  A  T  I  E  H  P  W  C  K  N  *  R  N  L  R  G   : G  M  V  L  H  T  G  W  W  I  F  A  K  Y  R  T  K  N  T  C  I  W  C  C  C  *  H  G  S  S  S  H  R :   L  F  S  R  Q  I  T  F  *  S  S  K  M  R  L  C  T  C  K  Y  I  T  T  T  L  *  Q  E  H  A  Y  Q  F  K  Y  P  E  Y  I  N  S  S :   L  E  H  S  L  A  T  R  T  K  T  T  K  I  V  F  P  I  W  T  G  S  D  I  A  A  G  Y  *  G  D  K  V  I  F  P  R  I  L  P  C  A  K  M  :  D  V  A  G  I  S  W  F  K  S  F  F  S  R  P  H  V  I  C  L  L  H  V  Y  Y  C  T  K  *  H  E  K  R  L  D  Q  T  S  F  I  *  S  Y  W  C  N  I  D  K  N  L  S  Y  I  L  E  *  T  P  P  T  I  I  V  E  S  E  A  S  L  L  Q  I  H  N  R  N  R  G  L  S  R  H  C  I  *  H  F  H  *  L  N  M  L  E  *  V  A  *  F  Q  F  L  Y  L  L  L  F  L  S  *  I  M  Y  *  S  N  L  Y  T  L  P  I  Y  I  N  F  T </second_frame>
            <third_frame>   N  L  F  S  L  F  S  S  I  Q  K  K  T  A  K  F  P  K  S  I  S  N  *  S  S  I  L  A  N  F  F  K  I  F  Q  F  S  N  T  Q  L  T  K  I  M  E  K  D  L  R  F  *  T  F  L  K  K  K  E  A  K  K  L  R  *  K  G  I  Y  L  K  M  E  C  V  G  A  Q  N  V  G  A  M  A  V  F  T  R  P  R  L  K  P  L  V  G  R  R  V  M  P  R  K  K  Q  S  F  W  R  M  S  S  M  K  V  K  C  N  S  S  S  G  S  D  S  C  V  V  D  K  E  D  F  A  D  E  E  D  Y  I  K  A  G  G  S  Q  L  V  F  V  Q  M  Q  Q  K  K  D  M  D  Q  Q  S  K  L  S  D  E  :  L  R  Q  I  S  A  G  Q  T  V  L  D  L  V  V  I  G  C  G  P  A  G  L  A  L  A  A  E  S  A  K  L  G  L  N  V  G  L  V  G  P  D  L  P  F  T  N  N  Y  G  V  W  E  D  E  F  K   : D  L  G  L  Q  A  C  I  E  H  V  W  R  D  T  I  V  Y  L  D  D  D  E  P  I  L  I  G  R  A  Y  G  R  V  S  R  H  F  L  H  E  E  L  L  K  R :   C  V  E  A  G  V  L  Y  L  N  S  K  V  D  R  I  V  E  A  T  N  G  Q  S  L  V  E  C  E  G  D  V  V  I  P  C  R :   F  V  T  V  A  S  G  A  A  S  G  K  F  L  Q  Y  E  L  G  G  P  R  V  S  V  Q  T  A  Y  G  V  E  V  E  :  V  D  N  N  P  F  D  P  S  L  M  V  F  M  D  Y  R  D  Y  V  R  H  D  A  Q  S  L  E  A  K  Y  P  T  F  L  Y  A  M  P  M  S  P  T  R  V  F  F  E  :  E  T  C  L  A  S  K  D  A  M  P  F  D  L  L  K  K  K  L  M  L  R  L  N  T  L  G  V  R  I  K  E  I  Y  E  E  :  E  W  S  Y  I  P  V  G  G  S  L  P  N  T  E  Q  K  T  L  A  F  G  A  A  A  S  M  V  H  P  A  T   : G  Y  S  V  V  R  S  L  S  E  A  P  K  C  A  S  V  L  A  N  I  L  R  Q  H  Y  S  K  N  M  L  T  S  S  S  I  P  S  I  S  T  Q   : A  W  N  T  L  W  P  Q  E  R  K  R  Q  R  S  F  F  L  F  G  L  A  L  I  L  Q  L  D  I  E  G  I  R  S  F  F  R  A  F  F  R  V  P  K  W :   M  W  Q  G  F  L  G  S  S  L  S  S  A  D  L  M  L  F  A  F  Y  M  F  I  I  A  P  N  D  M  R  K  G  L  I  R  H  L  L  S  D  P  T  G  A  T  L  I  R  T  Y  L  T  F  *  S  K  L  L  L  Q  *  L  L  N  Q  R  P  H  Y  F  R  F  I  T  E  I  A  V  S  R  G  I  V  Y  N  I  F  T  S  L  I  C  L  N  K  L  H  S  F  S  F  C  I  C  F  F  F  C  P  R  S  C  I  D  P  I  Y  I  H  C  Q  Y  I  *  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49745" stop="50050"/>
                    <exon start="50957" stop="51128"/>
                    <exon start="51845" stop="51980"/>
                    <exon start="52093" stop="52203"/>
                    <exon start="52283" stop="52385"/>
                    <exon start="52702" stop="52845"/>
                    <exon start="52942" stop="53049"/>
                    <exon start="53136" stop="53232"/>
                    <exon start="53457" stop="53582"/>
                    <exon start="53796" stop="53928"/>
                    <exon start="54553" stop="54718"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1599</number_coding_nucleotides>
                  <number_encoded_amino_acids>533</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGIYLKMECVGAQNVGAMAVFTRPRLKPLVGRRVMPRKKQSFWRMSSMKVKCNSSSGSDSCVVDKEDFADEEDYIKAGGSQLVFVQMQQKKDMDQQSKLSDELRQISAGQTVLDLVVIGCGPAGLALAAESAKLGLNVGLVGPDLPFTNNYGVWEDEFKDLGLQACIEHVWRDTIVYLDDDEPILIGRAYGRVSRHFLHEELLKRCVEAGVLYLNSKVDRIVEATNGQSLVECEGDVVIPCRFVTVASGAASGKFLQYELGGPRVSVQTAYGVEVEVDNNPFDPSLMVFMDYRDYVRHDAQSLEAKYPTFLYAMPMSPTRVFFEETCLASKDAMPFDLLKKKLMLRLNTLGVRIKEIYEEEWSYIPVGGSLPNTEQKTLAFGAAASMVHPATGYSVVRSLSEAPKCASVLANILRQHYSKNMLTSSSIPSISTQAWNTLWPQERKRQRSFFLFGLALILQLDIEGIRSFFRAFFRVPKWMWQGFLGSSLSSADLMLFAFYMFIIAPNDMRKGLIRHLLSDPTGATLIRTYLTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="59036" PGL_stop="61557"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59036" e_stop="59239"/>
            <exon e_start="59842" e_stop="60588"/>
            <exon e_start="60695" e_stop="61557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="0.996"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59036" e_stop="59239" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.914">
            <gDNA_intron_boundary i_start="59240" i_stop="59841" i_length="602"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="59842" e_stop="60588" e_length="747"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="60589" i_stop="60694" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="60695" e_stop="61557" e_length="863"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59036" stop="59239"/>
              <exon start="59842" stop="60378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60374" stop="60588"/>
              <exon start="60695" stop="61557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGCACTATTATCATCTGATGGCAGATATAGAAGGTTTACTAGACGAGAGATTGAGGTTGCAACTGACTACTTTTCCGAGTCTAAGATGATTGGTGAAGGAGCATACGGGAAAGTTTACAAAGGCGATCTTGATCACACCCCTGTTGCCATCAAAGTTCTTCATTCTGATGCATCAGAAAAGAAAGAGGAATTTCTAAAAGAG : GTGGAGGTTCTTAGCCAGTTACATCACCCACACATTGTTTTACTGCTTGGAGCCTGTCCTGAAAATGGTTGCCTTGCTTATGAGTATATGGAGAATGGAAACCTGGAAGATTACATATTGGAACGGAACAGCAAACCATTACCTTGGTTTTCTCGATTCAGGATACTTTTTGAAGTGGCATGTGCTCTTGCATTCCTACACAACTCAAAGCCTGAGCCTGTTATTCATCGAGATCTGAAACCAGGAAATATATTGTTGGACAAAAATTTTGTGAGCAAAATAGGAGATGTAGGTCTAGCAAAGATTATATCAGATGTTGTACCAGAAAATGTTACAGAATACAGGAACTCTGTTCTTGCTGGCACCCTTGGTTACATGGATCCAGAGTATCAAAGAACTGGCACACTCAGACCAAAATCTGATCTGTATGCTTTTGGAATAATAATACTTCAATTACTAACTGCTCGTCGTCCTAATGGCCTTATAATGAAATTTGAGAATGCTATAAATTGTAATTCATTAGTGGATATACTTGATAAGTCAGTTCCTGATTGGCCGTTGATTGAAGTAGAGGAGCTAGGTAGGATGGCGCTAAAATGCTGCATGCTTAGATGCCGAGAGAGACCTGACCTCGATACTGAAGTTCTTCCACTTCTGAAAAGACTTGCTGGATATGCTGACATGCATAGCAATGAAGAGAAGAACCTTATACACGCACCTATTCAGTACTTATGCCCGATCCTTCAG : GAAGTAATGGAAGATCCACAGATAGCAGCTGATGGCTATACGTATGAGCATAGAGCAATAAAGTTATGGTTTGACAGATACAGTGTATCACCCATGACAAAACAGAGACTACAGCACAAGCTAGTCACGCCAAACCACACATTGCGACTTGCTATACAAGAGTGGAGATCAACATTCAACAACATTCAGATAGAGAAAAACTAGTGATTGCTGTGGATAGTTCAAGGTAGAGTCTCTCATTTACTTATTTCTAATTCATTCACTTGTGGACTGGTTTGAATGCTGCATAACATCATCTTCAACCATACCTCCACTGTACTTCCGGTGCAAAGGGTCAAAACGTTCATGATGATATCAAGCCAAAACAATAACTAGAGAAACCAAGAAAAGAAGGAAAAGTAATAGGACTGTTGTATACACAAGTGACTTCAGAACAAAGTCGTCAAGTATTATGTTTGCATATATACATTATTACCGAGTGTGCATTAGCAACTGTAAATCTTTTGAAGTATTGTAAAGCTCCTGATTGTAGGAAACCAGTAGAAAATATGTGCAAAATTTAACATAATTCTGAGAGTGAGACCATACATTCTGATTCATGATTCTTCTGGTAGGAGTTTGAAGTATTGCCTAGAGATGATTTGATATGACATGACACAATTTCAGTTTACTGTGGACATGACCTTAGATAGGAGGAAATAGATTATGATAGAAGGTTAGTAGATAGTAGAGAATTGACTCGTTTCTCGTTACTAGTTAGTTGGAGTTTATGTCTTTCGATTTCTGTTACTATTTGTTGTTTATTGCACTTCGATGATTCTAGTATTTCGTTGTAGTTTGTGCTCCTTTTTTTTAGATTGCTT</gDNA_template>
            <first_frame> D  A  L  L  S  S  D  G  R  Y  R  R  F  T  R  R  E  I  E  V  A  T  D  Y  F  S  E  S  K  M  I  G  E  G  A  Y  G  K  V  Y  K  G  D  L  D  H  T  P  V  A  I  K  V  L  H  S  D  A  S  E  K  K  E  E  F  L  K  E  :  V  E  V  L  S  Q  L  H  H  P  H  I  V  L  L  L  G  A  C  P  E  N  G  C  L  A  Y  E  Y  M  E  N  G  N  L  E  D  Y  I  L  E  R  N  S  K  P  L  P  W  F  S  R  F  R  I  L  F  E  V  A  C  A  L  A  F  L  H  N  S  K  P  E  P  V  I  H  R  D  L  K  P  G  N  I  L  L  D  K  N  F  V  S  K  I  G  D  V  G  L  A  K  I  I  S  D  V  V  P  E  N  V  T  E  Y  R  N  S  V  L  A  G  T  L  G  Y  M  D  P  E  Y  Q  R  T  G  T  L  R  P  K  S  D  L  Y  A  F  G  I  I  I  L  Q  L  L  T  A  R  R  P  N  G  L  I  M  K  F  E  N  A  I  N  C  N  S  L  V  D  I  L  D  K  S  V  P  D  W  P  L  I  E  V  E  E  L  G  R  M  A  L  K  C  C  M  L  R  C  R  E  R  P  D  L  D  T  E  V  L  P  L  L  K  R  L  A  G  Y  A  D  M  H  S  N  E  E  K  N  L  I  H  A  P  I  Q  Y  L  C  P  I  L  Q  :  E  V  M  E  D  P  Q  I  A  A  D  G  Y  T  Y  E  H  R  A  I  K  L  W  F  D  R  Y  S  V  S  P  M  T  K  Q  R  L  Q  H  K  L  V  T  P  N  H  T  L  R  L  A  I  Q  E  W  R  S  T  F  N  N  I  Q  I  E  K  N  *  *  L  L  W  I  V  Q  G  R  V  S  H  L  L  I  S  N  S  F  T  C  G  L  V  *  M  L  H  N  I  I  F  N  H  T  S  T  V  L  P  V  Q  R  V  K  T  F  M  M  I  S  S  Q  N  N  N  *  R  N  Q  E  K  K  E  K  *  *  D  C  C  I  H  K  *  L  Q  N  K  V  V  K  Y  Y  V  C  I  Y  T  L  L  P  S  V  H  *  Q  L  *  I  F  *  S  I  V  K  L  L  I  V  G  N  Q  *  K  I  C  A  K  F  N  I  I  L  R  V  R  P  Y  I  L  I  H  D  S  S  G  R  S  L  K  Y  C  L  E  M  I  *  Y  D  M  T  Q  F  Q  F  T  V  D  M  T  L  D  R  R  K  *  I  M  I  E  G  *  *  I  V  E  N  *  L  V  S  R  Y  *  L  V  G  V  Y  V  F  R  F  L  L  L  F  V  V  Y  C  T  S  M  I  L  V  F  R  C  S  L  C  S  F  F  L  D  C   </first_frame>
            <second_frame>  M  H  Y  Y  H  L  M  A  D  I  E  G  L  L  D  E  R  L  R  L  Q  L  T  T  F  P  S  L  R  *  L  V  K  E  H  T  G  K  F  T  K  A  I  L  I  T  P  L  L  P  S  K  F  F  I  L  M  H  Q  K  R  K  R  N  F  *  K  R :   W  R  F  L  A  S  Y  I  T  H  T  L  F  Y  C  L  E  P  V  L  K  M  V  A  L  L  M  S  I  W  R  M  E  T  W  K  I  T  Y  W  N  G  T  A  N  H  Y  L  G  F  L  D  S  G  Y  F  L  K  W  H  V  L  L  H  S  Y  T  T  Q  S  L  S  L  L  F  I  E  I  *  N  Q  E  I  Y  C  W  T  K  I  L  *  A  K  *  E  M  *  V  *  Q  R  L  Y  Q  M  L  Y  Q  K  M  L  Q  N  T  G  T  L  F  L  L  A  P  L  V  T  W  I  Q  S  I  K  E  L  A  H  S  D  Q  N  L  I  C  M  L  L  E  *  *  Y  F  N  Y  *  L  L  V  V  L  M  A  L  *  *  N  L  R  M  L  *  I  V  I  H  *  W  I  Y  L  I  S  Q  F  L  I  G  R  *  L  K  *  R  S  *  V  G  W  R  *  N  A  A  C  L  D  A  E  R  D  L  T  S  I  L  K  F  F  H  F  *  K  D  L  L  D  M  L  T  C  I  A  M  K  R  R  T  L  Y  T  H  L  F  S  T  Y  A  R  S  F  R :   K  *  W  K  I  H  R  *  Q  L  M  A  I  R  M  S  I  E  Q  *  S  Y  G  L  T  D  T  V  Y  H  P  *  Q  N  R  D  Y  S  T  S  *  S  R  Q  T  T  H  C  D  L  L  Y  K  S  G  D  Q  H  S  T  T  F  R  *  R  K  T  S  D  C  C  G  *  F  K  V  E  S  L  I  Y  L  F  L  I  H  S  L  V  D  W  F  E  C  C  I  T  S  S  S  T  I  P  P  L  Y  F  R  C  K  G  S  K  R  S  *  *  Y  Q  A  K  T  I  T  R  E  T  K  K  R  R  K  S  N  R  T  V  V  Y  T  S  D  F  R  T  K  S  S  S  I  M  F  A  Y  I  H  Y  Y  R  V  C  I  S  N  C  K  S  F  E  V  L  *  S  S  *  L  *  E  T  S  R  K  Y  V  Q  N  L  T  *  F  *  E  *  D  H  T  F  *  F  M  I  L  L  V  G  V  *  S  I  A  *  R  *  F  D  M  T  *  H  N  F  S  L  L  W  T  *  P  *  I  G  G  N  R  L  *  *  K  V  S  R  *  *  R  I  D  S  F  L  V  T  S  *  L  E  F  M  S  F  D  F  C  Y  Y  L  L  F  I  A  L  R  *  F  *  Y  F  V  V  V  C  A  P  F  F  *  I  A  </second_frame>
            <third_frame>   C  T  I  I  I  *  W  Q  I  *  K  V  Y  *  T  R  D  *  G  C  N  *  L  L  F  R  V  *  D  D  W  *  R  S  I  R  E  S  L  Q  R  R  S  *  S  H  P  C  C  H  Q  S  S  S  F  *  C  I  R  K  E  R  G  I  S  K  R   : G  G  G  S  *  P  V  T  S  P  T  H  C  F  T  A  W  S  L  S  *  K  W  L  P  C  L  *  V  Y  G  E  W  K  P  G  R  L  H  I  G  T  E  Q  Q  T  I  T  L  V  F  S  I  Q  D  T  F  *  S  G  M  C  S  C  I  P  T  Q  L  K  A  *  A  C  Y  S  S  R  S  E  T  R  K  Y  I  V  G  Q  K  F  C  E  Q  N  R  R  C  R  S  S  K  D  Y  I  R  C  C  T  R  K  C  Y  R  I  Q  E  L  C  S  C  W  H  P  W  L  H  G  S  R  V  S  K  N  W  H  T  Q  T  K  I  *  S  V  C  F  W  N  N  N  T  S  I  T  N  C  S  S  S  *  W  P  Y  N  E  I  *  E  C  Y  K  L  *  F  I  S  G  Y  T  *  *  V  S  S  *  L  A  V  D  *  S  R  G  A  R  *  D  G  A  K  M  L  H  A  *  M  P  R  E  T  *  P  R  Y  *  S  S  S  T  S  E  K  T  C  W  I  C  *  H  A  *  Q  *  R  E  E  P  Y  T  R  T  Y  S  V  L  M  P  D  P  S   : G  S  N  G  R  S  T  D  S  S  *  W  L  Y  V  *  A  *  S  N  K  V  M  V  *  Q  I  Q  C  I  T  H  D  K  T  E  T  T  A  Q  A  S  H  A  K  P  H  I  A  T  C  Y  T  R  V  E  I  N  I  Q  Q  H  S  D  R  E  K  L  V  I  A  V  D  S  S  R  *  S  L  S  F  T  Y  F  *  F  I  H  L  W  T  G  L  N  A  A  *  H  H  L  Q  P  Y  L  H  C  T  S  G  A  K  G  Q  N  V  H  D  D  I  K  P  K  Q  *  L  E  K  P  R  K  E  G  K  V  I  G  L  L  Y  T  Q  V  T  S  E  Q  S  R  Q  V  L  C  L  H  I  Y  I  I  T  E  C  A  L  A  T  V  N  L  L  K  Y  C  K  A  P  D  C  R  K  P  V  E  N  M  C  K  I  *  H  N  S  E  S  E  T  I  H  S  D  S  *  F  F  W  *  E  F  E  V  L  P  R  D  D  L  I  *  H  D  T  I  S  V  Y  C  G  H  D  L  R  *  E  E  I  D  Y  D  R  R  L  V  D  S  R  E  L  T  R  F  S  L  L  V  S  W  S  L  C  L  S  I  S  V  T  I  C  C  L  L  H  F  D  D  S  S  I  S  L  *  F  V  L  L  F  F  R  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59036" stop="59239"/>
                    <exon start="59842" stop="60588"/>
                    <exon start="60695" stop="60898"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DALLSSDGRYRRFTRREIEVATDYFSESKMIGEGAYGKVYKGDLDHTPVAIKVLHSDASEKKEEFLKEVEVLSQLHHPHIVLLLGACPENGCLAYEYMENGNLEDYILERNSKPLPWFSRFRILFEVACALAFLHNSKPEPVIHRDLKPGNILLDKNFVSKIGDVGLAKIISDVVPENVTEYRNSVLAGTLGYMDPEYQRTGTLRPKSDLYAFGIIILQLLTARRPNGLIMKFENAINCNSLVDILDKSVPDWPLIEVEELGRMALKCCMLRCRERPDLDTEVLPLLKRLAGYADMHSNEEKNLIHAPIQYLCPILQEVMEDPQIAADGYTYEHRAIKLWFDRYSVSPMTKQRLQHKLVTPNHTLRLAIQEWRSTFNNIQIEKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="67383" PGL_stop="63881"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67383" e_stop="65441"/>
            <exon e_start="63944" e_stop="63881"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.703"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="67383" e_stop="65441" e_length="1943"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65440" i_stop="63945" i_length="1496"/>
          </intron>
          <exon e_serial="2" e_score="0.703">
            <gDNA_exon_boundary e_start="63944" e_stop="63881" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67383" stop="65441"/>
              <exon start="63944" stop="63881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316186" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAATTGAAGAGAGTGATATACGCAACCTTACCCCTGTCTTTGAGAAAGAAGAAAGGTTGTTTAAGATAGTAAATCGTCTAAAAAGACAAGTATTGGTAGAGAACACAACAATGAAGAAATCAAAAGGAGAAAAAGAACAATGGCAACAAAGAGAAACTTCCAATTTTTTTGGCTAAATTTCTTTGATAAAGAATTGAGTCCAATTCATAATGTCCTAAACAATATGAAATACTTGAAATGGAAAAGCAAATCTTCTATGAAGATCAATAATAACTTATTCTATAACATGACTCAAATAAACCATGTAAAAGAATTACCCCTAATATTCAAGCTCTAAAACATGTAAACTAAATCTTGAATTTCCATATTTCATCATAGAAAACTAGTCCCTGAGTGATTATGATGTAATAGTTTGTGAGCAATCTGATCTCTTACTTTCATCGCGTTCATTGATCTCACAACAACTTCCGGGATCATTTCATCATCAACCAAATCGAACCTTAATTCTTGACGTAATTCTTCACCTCTAATCTCACAGATATTGTGAAGTGTACAACAAGCTCCAAGAACAACAGGCAAATCTTGAAGTTTCACTTCTGTTCTTTTCTTTAAACAACTCCATCTTGCTTTCAATCTCATAAACGCTTCTTTGGCAACTCTTTGAACATCATTCACTTTCTCATTAAAAGCATGTTGTGTCCATGTAACATTCTGATGAGTAAACGGAACTAAAATCCAATCCGTTAATGGAAATCCTGAACTCCCAACAATGTAAGTACCATTCAAGTTTCCTCTGTTTGCTCTTTCATAAAGTATCGATTTTTCCAAGACTTGATCATCTGTCATCGAACCAGGCCATCCTATACAAACATCTGTGAAAATCCCCTTTGGATCAACAACCCCTTGTACTGTAACGGAGTAAGATGTCTTCTGATTCCTCTCAGTATGCCTTTTGTTGAAGTAACTCGCGACACTTTCCTTAGGCGCGATAATTGGTACATGTGTCGTGTACATTGATCCACCTACATTTTCTATCCCGGAAAGGATTTCAAACTCGTGTTTAATTTCCTCCATCTTAAGTTCATCAGGCCATTGTATGAATTTCGCCATTAACACCCCTCTTATAGCTGTGCATACCTCGAGCACGAGCTTATGACAAGTAGATATACCTAACCCAAATCGCCTAGACACTTCTCGGAGTGGCTCTCCTGTAGCCAATCTCCAAATGCATACAGCTACACGTTGACGAACAGGTATCGCCATACGTAACATCGTGTCCTTTTTTGTCACTACTGATTCTATTTCAGAACATATAAAATCAAACGTAGCTTTGCCCATATGAAATGCTTTCTTAAATTCCTCTTCAGGGAAATCAGGACGGTTACATTGCTCCCACCACGCATTTGATCTGTTTTTCACCCATAACCTCCTCTGCTGTAATGGCTGCTGAGAATAACCAGAACCAGAGCCAGAACCAGAGATAACCTCAACTAGACCATCTTCATTCTCATTGGCATTTTCACGAACACGTTTAGTGCCAGAGACAACACCATGATCAAAATCAAATTTTTGGTTCTTGTAATCAAAAAGGGTGTGATTTTCAACTGATTTTGATTCTGGGTGCGTTTCGTTTTCGACACCCAGAAATTTATTTAGGATTTCCTCAACTGGGTTGTGATCAAAATCGTTAATTTTTATCTTTTTCGACATGGATTGATGATGATGATGATCAGAAGATGGAGAAAGAAAGTCGAGTTCTTGAAAAAAGTTTAGAGAATTGAAATCTTCTTGTGATGGAAATGAAGAAGAAAAAGAAGTGATTTCCATTCAAATAATGAAGCTTTTTTTTCTTAATTCTTTTAATCTTTTTCCAGGTGTGAAAGTATTTGAAGATTTTGTCAAATATGAAACAAAGAAAAGTGTGTGAACACACAAGAAGTA : AAAAAAAAAAAAGAAAGGAAGAAAAGAGAAAAAAAAAGAAAGAAAAAAAAGGAGGAAAGAAAAA</gDNA_template>
            <first_frame> C  N  *  R  E  *  Y  T  Q  P  Y  P  C  L  *  E  R  R  K  V  V  *  D  S  K  S  S  K  K  T  S  I  G  R  E  H  N  N  E  E  I  K  R  R  K  R  T  M  A  T  K  R  N  F  Q  F  F  W  L  N  F  F  D  K  E  L  S  P  I  H  N  V  L  N  N  M  K  Y  L  K  W  K  S  K  S  S  M  K  I  N  N  N  L  F  Y  N  M  T  Q  I  N  H  V  K  E  L  P  L  I  F  K  L  *  N  M  *  T  K  S  *  I  S  I  F  H  H  R  K  L  V  P  E  *  L  *  C  N  S  L  *  A  I  *  S  L  T  F  I  A  F  I  D  L  T  T  T  S  G  I  I  S  S  S  T  K  S  N  L  N  S  *  R  N  S  S  P  L  I  S  Q  I  L  *  S  V  Q  Q  A  P  R  T  T  G  K  S  *  S  F  T  S  V  L  F  F  K  Q  L  H  L  A  F  N  L  I  N  A  S  L  A  T  L  *  T  S  F  T  F  S  L  K  A  C  C  V  H  V  T  F  *  *  V  N  G  T  K  I  Q  S  V  N  G  N  P  E  L  P  T  M  *  V  P  F  K  F  P  L  F  A  L  S  *  S  I  D  F  S  K  T  *  S  S  V  I  E  P  G  H  P  I  Q  T  S  V  K  I  P  F  G  S  T  T  P  C  T  V  T  E  *  D  V  F  *  F  L  S  V  C  L  L  L  K  *  L  A  T  L  S  L  G  A  I  I  G  T  C  V  V  Y  I  D  P  P  T  F  S  I  P  E  R  I  S  N  S  C  L  I  S  S  I  L  S  S  S  G  H  C  M  N  F  A  I  N  T  P  L  I  A  V  H  T  S  S  T  S  L  *  Q  V  D  I  P  N  P  N  R  L  D  T  S  R  S  G  S  P  V  A  N  L  Q  M  H  T  A  T  R  *  R  T  G  I  A  I  R  N  I  V  S  F  F  V  T  T  D  S  I  S  E  H  I  K  S  N  V  A  L  P  I  *  N  A  F  L  N  S  S  S  G  K  S  G  R  L  H  C  S  H  H  A  F  D  L  F  F  T  H  N  L  L  C  C  N  G  C  *  E  *  P  E  P  E  P  E  P  E  I  T  S  T  R  P  S  S  F  S  L  A  F  S  R  T  R  L  V  P  E  T  T  P  *  S  K  S  N  F  W  F  L  *  S  K  R  V  *  F  S  T  D  F  D  S  G  C  V  S  F  S  T  P  R  N  L  F  R  I  S  S  T  G  L  *  S  K  S  L  I  F  I  F  F  D  M  D  *  *  *  *  *  S  E  D  G  E  R  K  S  S  S  *  K  K  F  R  E  L  K  S  S  C  D  G  N  E  E  E  K  E  V  I  S  I  Q  I  M  K  L  F  F  L  N  S  F  N  L  F  P  G  V  K  V  F  E  D  F  V  K  Y  E  T  K  K  S  V  *  T  H  K  K  * :   K  K  K  K  K  G  R  K  E  K  K  K  E  R  K  K  R  R  K  E  K </first_frame>
            <second_frame>  V  I  E  E  S  D  I  R  N  L  T  P  V  F  E  K  E  E  R  L  F  K  I  V  N  R  L  K  R  Q  V  L  V  E  N  T  T  M  K  K  S  K  G  E  K  E  Q  W  Q  Q  R  E  T  S  N  F  F  G  *  I  S  L  I  K  N  *  V  Q  F  I  M  S  *  T  I  *  N  T  *  N  G  K  A  N  L  L  *  R  S  I  I  T  Y  S  I  T  *  L  K  *  T  M  *  K  N  Y  P  *  Y  S  S  S  K  T  C  K  L  N  L  E  F  P  Y  F  I  I  E  N  *  S  L  S  D  Y  D  V  I  V  C  E  Q  S  D  L  L  L  S  S  R  S  L  I  S  Q  Q  L  P  G  S  F  H  H  Q  P  N  R  T  L  I  L  D  V  I  L  H  L  *  S  H  R  Y  C  E  V  Y  N  K  L  Q  E  Q  Q  A  N  L  E  V  S  L  L  F  F  S  L  N  N  S  I  L  L  S  I  S  *  T  L  L  W  Q  L  F  E  H  H  S  L  S  H  *  K  H  V  V  S  M  *  H  S  D  E  *  T  E  L  K  S  N  P  L  M  E  I  L  N  S  Q  Q  C  K  Y  H  S  S  F  L  C  L  L  F  H  K  V  S  I  F  P  R  L  D  H  L  S  S  N  Q  A  I  L  Y  K  H  L  *  K  S  P  L  D  Q  Q  P  L  V  L  *  R  S  K  M  S  S  D  S  S  Q  Y  A  F  C  *  S  N  S  R  H  F  P  *  A  R  *  L  V  H  V  S  C  T  L  I  H  L  H  F  L  S  R  K  G  F  Q  T  R  V  *  F  P  P  S  *  V  H  Q  A  I  V  *  I  S  P  L  T  P  L  L  *  L  C  I  P  R  A  R  A  Y  D  K  *  I  Y  L  T  Q  I  A  *  T  L  L  G  V  A  L  L  *  P  I  S  K  C  I  Q  L  H  V  D  E  Q  V  S  P  Y  V  T  S  C  P  F  L  S  L  L  I  L  F  Q  N  I  *  N  Q  T  *  L  C  P  Y  E  M  L  S  *  I  P  L  Q  G  N  Q  D  G  Y  I  A  P  T  T  H  L  I  C  F  S  P  I  T  S  S  A  V  M  A  A  E  N  N  Q  N  Q  S  Q  N  Q  R  *  P  Q  L  D  H  L  H  S  H  W  H  F  H  E  H  V  *  C  Q  R  Q  H  H  D  Q  N  Q  I  F  G  S  C  N  Q  K  G  C  D  F  Q  L  I  L  I  L  G  A  F  R  F  R  H  P  E  I  Y  L  G  F  P  Q  L  G  C  D  Q  N  R  *  F  L  S  F  S  T  W  I  D  D  D  D  D  Q  K  M  E  K  E  S  R  V  L  E  K  S  L  E  N  *  N  L  L  V  M  E  M  K  K  K  K  K  *  F  P  F  K  *  *  S  F  F  F  L  I  L  L  I  F  F  Q  V  *  K  Y  L  K  I  L  S  N  M  K  Q  R  K  V  C  E  H  T  R  S   : K  K  K  K  R  K  E  E  K  R  K  K  K  K  E  K  K  G  G  K  K   </second_frame>
            <third_frame>   *  L  K  R  V  I  Y  A  T  L  P  L  S  L  R  K  K  K  G  C  L  R  *  *  I  V  *  K  D  K  Y  W  *  R  T  Q  Q  *  R  N  Q  K  E  K  K  N  N  G  N  K  E  K  L  P  I  F  L  A  K  F  L  *  *  R  I  E  S  N  S  *  C  P  K  Q  Y  E  I  L  E  M  E  K  Q  I  F  Y  E  D  Q  *  *  L  I  L  *  H  D  S  N  K  P  C  K  R  I  T  P  N  I  Q  A  L  K  H  V  N  *  I  L  N  F  H  I  S  S  *  K  T  S  P  *  V  I  M  M  *  *  F  V  S  N  L  I  S  Y  F  H  R  V  H  *  S  H  N  N  F  R  D  H  F  I  I  N  Q  I  E  P  *  F  L  T  *  F  F  T  S  N  L  T  D  I  V  K  C  T  T  S  S  K  N  N  R  Q  I  L  K  F  H  F  C  S  F  L  *  T  T  P  S  C  F  Q  S  H  K  R  F  F  G  N  S  L  N  I  I  H  F  L  I  K  S  M  L  C  P  C  N  I  L  M  S  K  R  N  *  N  P  I  R  *  W  K  S  *  T  P  N  N  V  S  T  I  Q  V  S  S  V  C  S  F  I  K  Y  R  F  F  Q  D  L  I  I  C  H  R  T  R  P  S  Y  T  N  I  C  E  N  P  L  W  I  N  N  P  L  Y  C  N  G  V  R  C  L  L  I  P  L  S  M  P  F  V  E  V  T  R  D  T  F  L  R  R  D  N  W  Y  M  C  R  V  H  *  S  T  Y  I  F  Y  P  G  K  D  F  K  L  V  F  N  F  L  H  L  K  F  I  R  P  L  Y  E  F  R  H  *  H  P  S  Y  S  C  A  Y  L  E  H  E  L  M  T  S  R  Y  T  *  P  K  S  P  R  H  F  S  E  W  L  S  C  S  Q  S  P  N  A  Y  S  Y  T  L  T  N  R  Y  R  H  T  *  H  R  V  L  F  C  H  Y  *  F  Y  F  R  T  Y  K  I  K  R  S  F  A  H  M  K  C  F  L  K  F  L  F  R  E  I  R  T  V  T  L  L  P  P  R  I  *  S  V  F  H  P  *  P  P  L  L  *  W  L  L  R  I  T  R  T  R  A  R  T  R  D  N  L  N  *  T  I  F  I  L  I  G  I  F  T  N  T  F  S  A  R  D  N  T  M  I  K  I  K  F  L  V  L  V  I  K  K  G  V  I  F  N  *  F  *  F  W  V  R  F  V  F  D  T  Q  K  F  I  *  D  F  L  N  W  V  V  I  K  I  V  N  F  Y  L  F  R  H  G  L  M  M  M  M  I  R  R  W  R  K  K  V  E  F  L  K  K  V  *  R  I  E  I  F  L  *  W  K  *  R  R  K  R  S  D  F  H  S  N  N  E  A  F  F  S  *  F  F  *  S  F  S  R  C  E  S  I  *  R  F  C  Q  I  *  N  K  E  K  C  V  N  T  Q  E  V  :  K  K  K  K  E  R  K  K  R  E  K  K  R  K  K  K  K  E  E  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67317" stop="67045"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKSSKKTSIGREHNNEEIKRRKRTMATKRNFQFFWLNFFDKELSPIHNVLNNMKYLKWKSKSSMKINNNLFYNMTQINHVKELPLIFKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66622" stop="66365"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPNNVSTIQVSSVCSFIKYRFFQDLIICHRTRPSYTNICENPLWINNPLYCNGVRCLLIPLSMPFVEVTRDTFLRRDNWYMCRVH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="74263" PGL_stop="78142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74263" e_stop="74624"/>
            <exon e_start="76659" e_stop="76833"/>
            <exon e_start="77522" e_stop="77605"/>
            <exon e_start="77747" e_stop="77988"/>
            <exon e_start="78099" e_stop="78142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.972"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.994" e_score="0.988"/>
          <exon-intron don_prob="0.129" acc_prob="1.000" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="74263" e_stop="74624" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74625" i_stop="76658" i_length="2034"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76659" e_stop="76833" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="76834" i_stop="77521" i_length="688"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="77522" e_stop="77605" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.914" acc_prob="0.994">
            <gDNA_intron_boundary i_start="77606" i_stop="77746" i_length="141"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="77747" e_stop="77988" e_length="242"/>
          </exon>
          <intron i_serial="4" don_prob="0.129" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77989" i_stop="78098" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78099" e_stop="78142" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74263" stop="74624"/>
              <exon start="76659" stop="76833"/>
              <exon start="77522" stop="77605"/>
              <exon start="77747" stop="77988"/>
              <exon start="78099" stop="78142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCCTCCGTCCAATTCTATCTTCATTTCTCCTTTTTAACGGATTTTCGTATTGAAAAGAAAAATAATAATCGAATTTCTCATCCTTCTTCTTCTTCATTGTCTTCGCCGATTCGCTCAATCGTCGCCCTGATAAAAAGGAAGACGATTGATCGAAGATTTTTTTAAAAAAATTATGGCGAAGAACAGAGAGGAGGAAGAGCAACAACAACATATAATGGTAGCGTTAACGGAGGAGGAAGAGGAAGAATTGGAGGAGCAATTAGGTTCTAGTTTGACTCTAGAACGAGTCGCTGCTGCGAAGAAATTGATCGAAGATCATTATAAATCGCATATGAAACTAATCCAGGATCGTAAACAAAG : GCGTTCACTGCTAGAAAGGAAATTGGAAGGCTCTGGTGTACCAAAAGAGGAACAAATGAACCTTCTAAAGGAATTGGAGAGAAAAGAGACAGAGTATATCCGACTAAAGCGTCACAAGATTTCTGTCGATGATTTTGAGCTTTTGACAATCATTGGGAGAGGAGCTTTTGGAGAG : GTCAGATTGTGCCGGGACAAAGTATCTAAAAATATATATGCAATGAAAAAATTGAAGAAGGCTGAAATGCTAAGTAGAGGGCAG : GTTGAACATGTTAGGGCCGAAAGGAATTTGCTTGCTGAAGTAGCGAGCCACTTTATTGTAAAACTTTTTTATTCTTTCCAAGATGCTGACTACTTGTATCTGGTAATGGAATATCTGCCTGGTGGTGATATGATGACATTGCTGATCAGGGAGGAGACATTAACTGAGACAGTCGCAAGATTTTACATTGCTCAAAGTGTTTTGGCCATAGAGTCTATTCATAAGCATAACTACATTCACCG : GGATATAAAACCTGACAATCTTCTTTTGGACAAAAATGGTCACA</gDNA_template>
            <first_frame> F  P  P  S  N  S  I  F  I  S  P  F  *  R  I  F  V  L  K  R  K  I  I  I  E  F  L  I  L  L  L  L  H  C  L  R  R  F  A  Q  S  S  P  *  *  K  G  R  R  L  I  E  D  F  F  K  K  I  M  A  K  N  R  E  E  E  E  Q  Q  Q  H  I  M  V  A  L  T  E  E  E  E  E  E  L  E  E  Q  L  G  S  S  L  T  L  E  R  V  A  A  A  K  K  L  I  E  D  H  Y  K  S  H  M  K  L  I  Q  D  R  K  Q  R :   R  S  L  L  E  R  K  L  E  G  S  G  V  P  K  E  E  Q  M  N  L  L  K  E  L  E  R  K  E  T  E  Y  I  R  L  K  R  H  K  I  S  V  D  D  F  E  L  L  T  I  I  G  R  G  A  F  G  E  :  V  R  L  C  R  D  K  V  S  K  N  I  Y  A  M  K  K  L  K  K  A  E  M  L  S  R  G  Q  :  V  E  H  V  R  A  E  R  N  L  L  A  E  V  A  S  H  F  I  V  K  L  F  Y  S  F  Q  D  A  D  Y  L  Y  L  V  M  E  Y  L  P  G  G  D  M  M  T  L  L  I  R  E  E  T  L  T  E  T  V  A  R  F  Y  I  A  Q  S  V  L  A  I  E  S  I  H  K  H  N  Y  I  H  R :   D  I  K  P  D  N  L  L  L  D  K  N  G  H  </first_frame>
            <second_frame>  S  L  R  P  I  L  S  S  F  L  L  F  N  G  F  S  Y  *  K  E  K  *  *  S  N  F  S  S  F  F  F  F  I  V  F  A  D  S  L  N  R  R  P  D  K  K  E  D  D  *  S  K  I  F  L  K  K  L  W  R  R  T  E  R  R  K  S  N  N  N  I  *  W  *  R  *  R  R  R  K  R  K  N  W  R  S  N  *  V  L  V  *  L  *  N  E  S  L  L  R  R  N  *  S  K  I  I  I  N  R  I  *  N  *  S  R  I  V  N  K   : G  V  H  C  *  K  G  N  W  K  A  L  V  Y  Q  K  R  N  K  *  T  F  *  R  N  W  R  E  K  R  Q  S  I  S  D  *  S  V  T  R  F  L  S  M  I  L  S  F  *  Q  S  L  G  E  E  L  L  E  R :   S  D  C  A  G  T  K  Y  L  K  I  Y  M  Q  *  K  N  *  R  R  L  K  C  *  V  E  G  R :   L  N  M  L  G  P  K  G  I  C  L  L  K  *  R  A  T  L  L  *  N  F  F  I  L  S  K  M  L  T  T  C  I  W  *  W  N  I  C  L  V  V  I  *  *  H  C  *  S  G  R  R  H  *  L  R  Q  S  Q  D  F  T  L  L  K  V  F  W  P  *  S  L  F  I  S  I  T  T  F  T   : G  I  *  N  L  T  I  F  F  W  T  K  M  V  T </second_frame>
            <third_frame>   P  S  V  Q  F  Y  L  H  F  S  F  L  T  D  F  R  I  E  K  K  N  N  N  R  I  S  H  P  S  S  S  S  L  S  S  P  I  R  S  I  V  A  L  I  K  R  K  T  I  D  R  R  F  F  *  K  N  Y  G  E  E  Q  R  G  G  R  A  T  T  T  Y  N  G  S  V  N  G  G  G  R  G  R  I  G  G  A  I  R  F  *  F  D  S  R  T  S  R  C  C  E  E  I  D  R  R  S  L  *  I  A  Y  E  T  N  P  G  S  *  T  K  :  A  F  T  A  R  K  E  I  G  R  L  W  C  T  K  R  G  T  N  E  P  S  K  G  I  G  E  K  R  D  R  V  Y  P  T  K  A  S  Q  D  F  C  R  *  F  *  A  F  D  N  H  W  E  R  S  F  W  R   : G  Q  I  V  P  G  Q  S  I  *  K  Y  I  C  N  E  K  I  E  E  G  *  N  A  K  *  R  A   : G  *  T  C  *  G  R  K  E  F  A  C  *  S  S  E  P  L  Y  C  K  T  F  L  F  F  P  R  C  *  L  L  V  S  G  N  G  I  S  A  W  W  *  Y  D  D  I  A  D  Q  G  G  D  I  N  *  D  S  R  K  I  L  H  C  S  K  C  F  G  H  R  V  Y  S  *  A  *  L  H  S  P  :  G  Y  K  T  *  Q  S  S  F  G  Q  K  W  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74398" stop="74624"/>
                    <exon start="76659" stop="76833"/>
                    <exon start="77522" stop="77605"/>
                    <exon start="77747" stop="77988"/>
                    <exon start="78099" stop="78141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGRRLIEDFFKKIMAKNREEEEQQQHIMVALTEEEEEELEEQLGSSLTLERVAAAKKLIEDHYKSHMKLIQDRKQRRSLLERKLEGSGVPKEEQMNLLKELERKETEYIRLKRHKISVDDFELLTIIGRGAFGEVRLCRDKVSKNIYAMKKLKKAEMLSRGQVEHVRAERNLLAEVASHFIVKLFYSFQDADYLYLVMEYLPGGDMMTLLIREETLTETVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="78150" PGL_stop="84441"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78150" e_stop="78303"/>
            <exon e_start="79424" e_stop="79503"/>
            <exon e_start="79692" e_stop="79776"/>
            <exon e_start="80105" e_stop="80236"/>
            <exon e_start="80310" e_stop="80423"/>
            <exon e_start="80864" e_stop="80908"/>
            <exon e_start="81001" e_stop="81085"/>
            <exon e_start="83606" e_stop="84441"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.864" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.888" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.598" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.662" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.502" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="78150" e_stop="78303" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="0.864" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78304" i_stop="79423" i_length="1120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79424" e_stop="79503" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.978">
            <gDNA_intron_boundary i_start="79504" i_stop="79691" i_length="188"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79692" e_stop="79776" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.598" acc_prob="0.973">
            <gDNA_intron_boundary i_start="79777" i_stop="80104" i_length="328"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80105" e_stop="80236" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.970">
            <gDNA_intron_boundary i_start="80237" i_stop="80309" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80310" e_stop="80423" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.662">
            <gDNA_intron_boundary i_start="80424" i_stop="80863" i_length="440"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80864" e_stop="80908" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.965" acc_prob="0.502">
            <gDNA_intron_boundary i_start="80909" i_stop="81000" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="81001" e_stop="81085" e_length="85"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.981">
            <gDNA_intron_boundary i_start="81086" i_stop="83605" i_length="2520"/>
          </intron>
          <exon e_serial="8" e_score="0.976">
            <gDNA_exon_boundary e_start="83606" e_stop="84441" e_length="836"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78150" stop="78303"/>
              <exon start="79424" stop="79503"/>
              <exon start="79692" stop="79776"/>
              <exon start="80105" stop="80236"/>
              <exon start="80310" stop="80423"/>
              <exon start="80864" stop="80908"/>
              <exon start="81001" stop="81085"/>
              <exon start="83606" stop="84441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325751" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTGATTTTGGTCTATGCAAGCCCCTTGACTGTTCGAATTTATCTCCTATAAATGAAAATGAAGTGATTGATGGTGAGGAAAAGGGATCTGCTAACAAGTGGAATAGCTCCCTTGAACAAATGCAGCATTGGCAAATAAACAGGAGAAAATTA : GCATTTTCAACAGTGGGCACTCCTGACTATATTGCTCCTGAGGTTTTACTGAAGAAAGGCTATGGAGTGGAATGTGATTG : GTGGTCACTTGGCGCCATCATGTATGAGATGCTCGTTGGTTATCCCCCTTTCTACTCCGAAGACCCAATAACAACATGTAGAAAG : ATAGTTCATTGGAGAAATCACATAAAATTTCCAGAGGAAGCAAGATTAACTCCTGAAGCCAAAGACCTGATCTGTAAGTTGCTTTGTGATGCTGAAAATCGTCTTGGTTGTCGAGGAGCAGAGCAAATAAAG : GCTCACCCCTGGTTCAAAGACATAAAGTGGGATAAACTTTATAACATGGAGGCAGCATATAAGCCAGAAGTCAATGATGCTCTTGACACTCAAAATTTCATGAAGTTTGATGAG : GCAAATCAAGCACCAGCAAAAAATAGTTCAGGACCCAATCGAAAG : AAGCGTCTGATTCCCGAAGATTTAAGTTTTGTTGGCTATACCTACAAGAATTTTGAGGCTGTGAAGGGATTAAGACATTCTTCAG : GTGATTCTGCAGTGGATATCTCAGGCAAGTGTTCAATCGATGACAATGAAATGCTTGTCCTCGCTGCTGCATCAGCAGATACTGTAACTCTCTGATGAGCATCCAAGTTCTACAACAAAACTAGACAATCAACATGCCATTTTTATGGTTTTTCCTGGAGGTAATAACATTGAGTGTTCAATTCGAGTTCCGACCATTGCTCCTTTGTCCACAAAAGCAGATTGCCATTTACAACACTTTAAAATGTAAAAAGTGACAAATACAGGATCTCTGGGTAGGTTTCATGCAGCTATCACTAGGAGTTTTTTTCTTTTTTCTTTTTCAAACTTGAAAATTGTGTATACAAACATTAAGCATTTAACTTGACTACCCTTTTAGGAAGAGCTAAGAATGACTTAAATCATATCTGTCTAGAACCCTTTTGAGTTCTTACTCCCAGATTTTGTACATTCACACAGCTGTACCAAGAAAATGGGGAAATCAAATAGTATGCTTTCTTCTAAATCAGTTTCTGTATCTTTTTCCAACAGCCAGAGGTGTCAAATGAGCGAGCTGAATTATAATGGAGGCTTCCAGCTTATGAAGGCTGGTTCCATACAGGATTAGCTATATCTATGTGACTTACATTTATATTGATGGGGTATAGTATAACGATAACCATTACAGGAACAACGGCATACCAAGTGGTGTAATCCCACATGTCGAATCTAAGGAGGGTAGGATTTACATAGACCTTACCCTTAGCTTTGTGGGTAAGAGAGGTTGTTTCTGATAGATCCTTGATGAGTTGATAGGTCTCTAAAATGATCTCATAAGGAGAAATGGGATCTTAAAAG</gDNA_template>
            <first_frame> V  *  F  W  S  M  Q  A  P  *  L  F  E  F  I  S  Y  K  *  K  *  S  D  *  W  *  G  K  G  I  C  *  Q  V  E  *  L  P  *  T  N  A  A  L  A  N  K  Q  E  K  I   : S  I  F  N  S  G  H  S  *  L  Y  C  S  *  G  F  T  E  E  R  L  W  S  G  M  *  L  :  V  V  T  W  R  H  H  V  *  D  A  R  W  L  S  P  F  L  L  R  R  P  N  N  N  M  *  K   : D  S  S  L  E  K  S  H  K  I  S  R  G  S  K  I  N  S  *  S  Q  R  P  D  L  *  V  A  L  *  C  *  K  S  S  W  L  S  R  S  R  A  N  K   : G  S  P  L  V  Q  R  H  K  V  G  *  T  L  *  H  G  G  S  I  *  A  R  S  Q  *  C  S  *  H  S  K  F  H  E  V  *  *   : G  K  S  S  T  S  K  K  *  F  R  T  Q  S  K   : E  A  S  D  S  R  R  F  K  F  C  W  L  Y  L  Q  E  F  *  G  C  E  G  I  K  T  F  F  R :   *  F  C  S  G  Y  L  R  Q  V  F  N  R  *  Q  *  N  A  C  P  R  C  C  I  S  R  Y  C  N  S  L  M  S  I  Q  V  L  Q  Q  N  *  T  I  N  M  P  F  L  W  F  F  L  E  V  I  T  L  S  V  Q  F  E  F  R  P  L  L  L  C  P  Q  K  Q  I  A  I  Y  N  T  L  K  C  K  K  *  Q  I  Q  D  L  W  V  G  F  M  Q  L  S  L  G  V  F  F  F  F  L  F  Q  T  *  K  L  C  I  Q  T  L  S  I  *  L  D  Y  P  F  R  K  S  *  E  *  L  K  S  Y  L  S  R  T  L  L  S  S  Y  S  Q  I  L  Y  I  H  T  A  V  P  R  K  W  G  N  Q  I  V  C  F  L  L  N  Q  F  L  Y  L  F  P  T  A  R  G  V  K  *  A  S  *  I  I  M  E  A  S  S  L  *  R  L  V  P  Y  R  I  S  Y  I  Y  V  T  Y  I  Y  I  D  G  V  *  Y  N  D  N  H  Y  R  N  N  G  I  P  S  G  V  I  P  H  V  E  S  K  E  G  R  I  Y  I  D  L  T  L  S  F  V  G  K  R  G  C  F  *  *  I  L  D  E  L  I  G  L  *  N  D  L  I  R  R  N  G  I  L  K  </first_frame>
            <second_frame>  S  D  F  G  L  C  K  P  L  D  C  S  N  L  S  P  I  N  E  N  E  V  I  D  G  E  E  K  G  S  A  N  K  W  N  S  S  L  E  Q  M  Q  H  W  Q  I  N  R  R  K  L  :  A  F  S  T  V  G  T  P  D  Y  I  A  P  E  V  L  L  K  K  G  Y  G  V  E  C  D  W :   W  S  L  G  A  I  M  Y  E  M  L  V  G  Y  P  P  F  Y  S  E  D  P  I  T  T  C  R  K  :  I  V  H  W  R  N  H  I  K  F  P  E  E  A  R  L  T  P  E  A  K  D  L  I  C  K  L  L  C  D  A  E  N  R  L  G  C  R  G  A  E  Q  I  K  :  A  H  P  W  F  K  D  I  K  W  D  K  L  Y  N  M  E  A  A  Y  K  P  E  V  N  D  A  L  D  T  Q  N  F  M  K  F  D  E  :  A  N  Q  A  P  A  K  N  S  S  G  P  N  R  K  :  K  R  L  I  P  E  D  L  S  F  V  G  Y  T  Y  K  N  F  E  A  V  K  G  L  R  H  S  S   : G  D  S  A  V  D  I  S  G  K  C  S  I  D  D  N  E  M  L  V  L  A  A  A  S  A  D  T  V  T  L  *  *  A  S  K  F  Y  N  K  T  R  Q  S  T  C  H  F  Y  G  F  S  W  R  *  *  H  *  V  F  N  S  S  S  D  H  C  S  F  V  H  K  S  R  L  P  F  T  T  L  *  N  V  K  S  D  K  Y  R  I  S  G  *  V  S  C  S  Y  H  *  E  F  F  S  F  F  F  F  K  L  E  N  C  V  Y  K  H  *  A  F  N  L  T  T  L  L  G  R  A  K  N  D  L  N  H  I  C  L  E  P  F  *  V  L  T  P  R  F  C  T  F  T  Q  L  Y  Q  E  N  G  E  I  K  *  Y  A  F  F  *  I  S  F  C  I  F  F  Q  Q  P  E  V  S  N  E  R  A  E  L  *  W  R  L  P  A  Y  E  G  W  F  H  T  G  L  A  I  S  M  *  L  T  F  I  L  M  G  Y  S  I  T  I  T  I  T  G  T  T  A  Y  Q  V  V  *  S  H  M  S  N  L  R  R  V  G  F  T  *  T  L  P  L  A  L  W  V  R  E  V  V  S  D  R  S  L  M  S  *  *  V  S  K  M  I  S  *  G  E  M  G  S  *  K </second_frame>
            <third_frame>   L  I  L  V  Y  A  S  P  L  T  V  R  I  Y  L  L  *  M  K  M  K  *  L  M  V  R  K  R  D  L  L  T  S  G  I  A  P  L  N  K  C  S  I  G  K  *  T  G  E  N  * :   H  F  Q  Q  W  A  L  L  T  I  L  L  L  R  F  Y  *  R  K  A  M  E  W  N  V  I   : G  G  H  L  A  P  S  C  M  R  C  S  L  V  I  P  L  S  T  P  K  T  Q  *  Q  H  V  E  R :   *  F  I  G  E  I  T  *  N  F  Q  R  K  Q  D  *  L  L  K  P  K  T  *  S  V  S  C  F  V  M  L  K  I  V  L  V  V  E  E  Q  S  K  *  R :   L  T  P  G  S  K  T  *  S  G  I  N  F  I  T  W  R  Q  H  I  S  Q  K  S  M  M  L  L  T  L  K  I  S  *  S  L  M  R :   Q  I  K  H  Q  Q  K  I  V  Q  D  P  I  E  R :   S  V  *  F  P  K  I  *  V  L  L  A  I  P  T  R  I  L  R  L  *  R  D  *  D  I  L  Q  :  V  I  L  Q  W  I  S  Q  A  S  V  Q  S  M  T  M  K  C  L  S  S  L  L  H  Q  Q  I  L  *  L  S  D  E  H  P  S  S  T  T  K  L  D  N  Q  H  A  I  F  M  V  F  P  G  G  N  N  I  E  C  S  I  R  V  P  T  I  A  P  L  S  T  K  A  D  C  H  L  Q  H  F  K  M  *  K  V  T  N  T  G  S  L  G  R  F  H  A  A  I  T  R  S  F  F  L  F  S  F  S  N  L  K  I  V  Y  T  N  I  K  H  L  T  *  L  P  F  *  E  E  L  R  M  T  *  I  I  S  V  *  N  P  F  E  F  L  L  P  D  F  V  H  S  H  S  C  T  K  K  M  G  K  S  N  S  M  L  S  S  K  S  V  S  V  S  F  S  N  S  Q  R  C  Q  M  S  E  L  N  Y  N  G  G  F  Q  L  M  K  A  G  S  I  Q  D  *  L  Y  L  C  D  L  H  L  Y  *  W  G  I  V  *  R  *  P  L  Q  E  Q  R  H  T  K  W  C  N  P  T  C  R  I  *  G  G  *  D  L  H  R  P  Y  P  *  L  C  G  *  E  R  L  F  L  I  D  P  *  *  V  D  R  S  L  K  *  S  H  K  E  K  W  D  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78151" stop="78303"/>
                    <exon start="79424" stop="79503"/>
                    <exon start="79692" stop="79776"/>
                    <exon start="80105" stop="80236"/>
                    <exon start="80310" stop="80423"/>
                    <exon start="80864" stop="80908"/>
                    <exon start="81001" stop="81085"/>
                    <exon start="83606" stop="83700"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDFGLCKPLDCSNLSPINENEVIDGEEKGSANKWNSSLEQMQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSEDPITTCRKIVHWRNHIKFPEEARLTPEAKDLICKLLCDAENRLGCRGAEQIKAHPWFKDIKWDKLYNMEAAYKPEVNDALDTQNFMKFDEANQAPAKNSSGPNRKKRLIPEDLSFVGYTYKNFEAVKGLRHSSGDSAVDISGKCSIDDNEMLVLAAASADTVTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="90375" PGL_stop="84388"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90375" e_stop="89897"/>
            <exon e_start="89729" e_stop="89645"/>
            <exon e_start="88472" e_stop="88338"/>
            <exon e_start="87557" e_stop="87333"/>
            <exon e_start="87250" e_stop="87068"/>
            <exon e_start="86654" e_stop="86431"/>
            <exon e_start="86320" e_stop="86275"/>
            <exon e_start="86185" e_stop="86084"/>
            <exon e_start="84781" e_stop="84388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.679" acc_prob="0.322" e_score="1.000"/>
          <exon-intron don_prob="0.217" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.776" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90375" e_stop="89897" e_length="479"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89896" i_stop="89730" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89729" e_stop="89645" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.904">
            <gDNA_intron_boundary i_start="89644" i_stop="88473" i_length="1172"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88472" e_stop="88338" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.938">
            <gDNA_intron_boundary i_start="88337" i_stop="87558" i_length="780"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87557" e_stop="87333" e_length="225"/>
          </exon>
          <intron i_serial="4" don_prob="0.679" acc_prob="0.322">
            <gDNA_intron_boundary i_start="87332" i_stop="87251" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87250" e_stop="87068" e_length="183"/>
          </exon>
          <intron i_serial="5" don_prob="0.217" acc_prob="0.952">
            <gDNA_intron_boundary i_start="87067" i_stop="86655" i_length="413"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86654" e_stop="86431" e_length="224"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.851">
            <gDNA_intron_boundary i_start="86430" i_stop="86321" i_length="110"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86320" e_stop="86275" e_length="46"/>
          </exon>
          <intron i_serial="7" don_prob="0.838" acc_prob="0.918">
            <gDNA_intron_boundary i_start="86274" i_stop="86186" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86185" e_stop="86084" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.776">
            <gDNA_intron_boundary i_start="86083" i_stop="84782" i_length="1302"/>
          </intron>
          <exon e_serial="9" e_score="0.982">
            <gDNA_exon_boundary e_start="84781" e_stop="84388" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90375" stop="89897"/>
              <exon start="89729" stop="89645"/>
              <exon start="88472" stop="88338"/>
              <exon start="87557" stop="87333"/>
              <exon start="87250" stop="87068"/>
              <exon start="86654" stop="86431"/>
              <exon start="86320" stop="86275"/>
              <exon start="86185" stop="86084"/>
              <exon start="84781" stop="84388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316934" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCTATTATTTGCAAGACTTCTACATAGAGTCTTTCAGTTGACCCAGCTAAGCAGAAATGCCCCTAAGCTCCCCAATTTTTTCCAACATATATTTTTTTTTTCAAAAAAAATAATCATATAGGAGTGAACTTTTAACTAGAATACAAAAAACTCAGTTGCCTGGAAGCAATTTCATCTTTGATCTTTCAAGATTTCTATAAAAGAGTGAACTTTAAGCAGAATTAGCAAAACCCCATTTGCCTGAAAGCAACTTTCATTTTGGGTGTTCAAGATTTCAATAAAAAAAAAGTGATTTTTAAGAAGAATTCAAGATTTCAATAAAAAAGTGATTTTTAAGAAGAATTCAAGAACCCAAGTTTCCCAAGAAGCAATTTTTACTGTGATTTTACAAGATTTAGCTATGAAGAAAGGATCTTTTGCACCTAATCTTAAACTCTCTCTTCCTCCTCCTGATGAAGTTGCTCTCTCCAAATTCCT : GACTGAATCAGGAACATTTAAGGATGGAGATCTTCTGGTGAATAGAGATGGAGTTCGAATTGTTTCGCAGAGTGAAGTTGCAGCT : CCTTCAGTTATACAGCCATCAGACAACCAGTTATGCTTAGCTGATTTTGAAGCAGTAAAAGTTATTGGAAAGGGAAATGGTGGTATAGTGCGGCTGGTTCAGCATAAATGGACAGGGCAATTTTTCGCTCTCAAG : GTTATTCAGATGAATATTGATGAGTCTATGCGCAAACATATTGCTCAAGAACTGAGAATTAATCAGTCATCCCAGTGTCCATATGTTGTCATATGCTATCAGTCGTTCTTCGACAATGGTGCTATATCCTTGATTTTGGAGTATATGGATGGTGGTTCCTTAGCAGATTTTCTGAAAAAGGTCAAAACAATACCTGAACGATTTCTTGCTGTTATCTGCAAACAG : GTTCTCAAAGGCTTGTGGTATCTTCATCATGAGAAGCATATTATTCACAGGGATTTGAAACCTTCGAATTTGCTAATCAATCACAGAGGTGATGTCAAAATCACAGACTTTGGTGTGAGTGCAGTACTAGCAAGCACATCTGGACTGGCCAATACCTTTGTCGGCACATACAACTATATGTCT : CCAGAGAGAATTTCAGGAGGTGCCTATGATTACAAAAGCGACATTTGGAGCTTGGGTTTAGTCTTGCTCGAGTGTGCAACAGGTCATTTCCCATATAAACCACCCGAGGGAGATGAAGGATGGGTCAATGTCTATGAACTTATGGAAACCATAGTTGACCAACCAGAACCTTGTGCACCTCCTGACCAATTTTCTCCACAATTCTGCTCATTCATATCTGCATG : TGTCCAGAAGCACCAGAAGGACAGACTGTCGGCAAATGATCTCATG : AGTCACCCTTTCATCACCATGTACGATGACCAGGATATCGATCTTGGATCTTACTTCACTTCCGCAGGACCTCCATTGGCAACACTTACTGAGCTATAATAG : GTTTTCTACAATGTCTTGCAACTGATGGAATTTCGGTCAATAGCTTTTCCAGTCGCAACGTTGCAAAAATTAGAAGCCTTTTAAAAGGCATTGAGAATCAAAATGAAGCAGATGAAGCCATTATTGTACTTTTCAAGTCTCCGGTAGGTAGCGTTGGGAGTGTAACTGTGACATTTTCTACTATGTATGTGATTCAAATGGGAACAACTCCAGATATCCTTTTGATATGACTTACTTTTGACATTAATCCTTGGTGGTGCAAGTGTTTTTGGTTTACAATTTGACTTCTACCTTTTAGCACATGAAGTTGTTTATTGTCAGTGTTGAACTGAATGTAAAACTTTTAAGATCCCATTTCTCCTTATGAGATCATTTTAGAGACCTATCAACTCAT</gDNA_template>
            <first_frame> L  L  L  F  A  R  L  L  H  R  V  F  Q  L  T  Q  L  S  R  N  A  P  K  L  P  N  F  F  Q  H  I  F  F  F  S  K  K  I  I  I  *  E  *  T  F  N  *  N  T  K  N  S  V  A  W  K  Q  F  H  L  *  S  F  K  I  S  I  K  E  *  T  L  S  R  I  S  K  T  P  F  A  *  K  Q  L  S  F  W  V  F  K  I  S  I  K  K  K  *  F  L  R  R  I  Q  D  F  N  K  K  V  I  F  K  K  N  S  R  T  Q  V  S  Q  E  A  I  F  T  V  I  L  Q  D  L  A  M  K  K  G  S  F  A  P  N  L  K  L  S  L  P  P  P  D  E  V  A  L  S  K  F  L :   T  E  S  G  T  F  K  D  G  D  L  L  V  N  R  D  G  V  R  I  V  S  Q  S  E  V  A  A  :  P  S  V  I  Q  P  S  D  N  Q  L  C  L  A  D  F  E  A  V  K  V  I  G  K  G  N  G  G  I  V  R  L  V  Q  H  K  W  T  G  Q  F  F  A  L  K  :  V  I  Q  M  N  I  D  E  S  M  R  K  H  I  A  Q  E  L  R  I  N  Q  S  S  Q  C  P  Y  V  V  I  C  Y  Q  S  F  F  D  N  G  A  I  S  L  I  L  E  Y  M  D  G  G  S  L  A  D  F  L  K  K  V  K  T  I  P  E  R  F  L  A  V  I  C  K  Q  :  V  L  K  G  L  W  Y  L  H  H  E  K  H  I  I  H  R  D  L  K  P  S  N  L  L  I  N  H  R  G  D  V  K  I  T  D  F  G  V  S  A  V  L  A  S  T  S  G  L  A  N  T  F  V  G  T  Y  N  Y  M  S  :  P  E  R  I  S  G  G  A  Y  D  Y  K  S  D  I  W  S  L  G  L  V  L  L  E  C  A  T  G  H  F  P  Y  K  P  P  E  G  D  E  G  W  V  N  V  Y  E  L  M  E  T  I  V  D  Q  P  E  P  C  A  P  P  D  Q  F  S  P  Q  F  C  S  F  I  S  A  C :   V  Q  K  H  Q  K  D  R  L  S  A  N  D  L  M  :  S  H  P  F  I  T  M  Y  D  D  Q  D  I  D  L  G  S  Y  F  T  S  A  G  P  P  L  A  T  L  T  E  L  *  *  :  V  F  Y  N  V  L  Q  L  M  E  F  R  S  I  A  F  P  V  A  T  L  Q  K  L  E  A  F  *  K  A  L  R  I  K  M  K  Q  M  K  P  L  L  Y  F  S  S  L  R  *  V  A  L  G  V  *  L  *  H  F  L  L  C  M  *  F  K  W  E  Q  L  Q  I  S  F  *  Y  D  L  L  L  T  L  I  L  G  G  A  S  V  F  G  L  Q  F  D  F  Y  L  L  A  H  E  V  V  Y  C  Q  C  *  T  E  C  K  T  F  K  I  P  F  L  L  M  R  S  F  *  R  P  I  N  S  </first_frame>
            <second_frame>  C  Y  Y  L  Q  D  F  Y  I  E  S  F  S  *  P  S  *  A  E  M  P  L  S  S  P  I  F  S  N  I  Y  F  F  F  Q  K  K  *  S  Y  R  S  E  L  L  T  R  I  Q  K  T  Q  L  P  G  S  N  F  I  F  D  L  S  R  F  L  *  K  S  E  L  *  A  E  L  A  K  P  H  L  P  E  S  N  F  H  F  G  C  S  R  F  Q  *  K  K  S  D  F  *  E  E  F  K  I  S  I  K  K  *  F  L  R  R  I  Q  E  P  K  F  P  K  K  Q  F  L  L  *  F  Y  K  I  *  L  *  R  K  D  L  L  H  L  I  L  N  S  L  F  L  L  L  M  K  L  L  S  P  N  S   : *  L  N  Q  E  H  L  R  M  E  I  F  W  *  I  E  M  E  F  E  L  F  R  R  V  K  L  Q  L :   L  Q  L  Y  S  H  Q  T  T  S  Y  A  *  L  I  L  K  Q  *  K  L  L  E  R  E  M  V  V  *  C  G  W  F  S  I  N  G  Q  G  N  F  S  L  S  R :   L  F  R  *  I  L  M  S  L  C  A  N  I  L  L  K  N  *  E  L  I  S  H  P  S  V  H  M  L  S  Y  A  I  S  R  S  S  T  M  V  L  Y  P  *  F  W  S  I  W  M  V  V  P  *  Q  I  F  *  K  R  S  K  Q  Y  L  N  D  F  L  L  L  S  A  N  R :   F  S  K  A  C  G  I  F  I  M  R  S  I  L  F  T  G  I  *  N  L  R  I  C  *  S  I  T  E  V  M  S  K  S  Q  T  L  V  *  V  Q  Y  *  Q  A  H  L  D  W  P  I  P  L  S  A  H  T  T  I  C  L :   Q  R  E  F  Q  E  V  P  M  I  T  K  A  T  F  G  A  W  V  *  S  C  S  S  V  Q  Q  V  I  S  H  I  N  H  P  R  E  M  K  D  G  S  M  S  M  N  L  W  K  P  *  L  T  N  Q  N  L  V  H  L  L  T  N  F  L  H  N  S  A  H  S  Y  L  H   : V  S  R  S  T  R  R  T  D  C  R  Q  M  I  S  * :   V  T  L  S  S  P  C  T  M  T  R  I  S  I  L  D  L  T  S  L  P  Q  D  L  H  W  Q  H  L  L  S  Y  N  R :   F  S  T  M  S  C  N  *  W  N  F  G  Q  *  L  F  Q  S  Q  R  C  K  N  *  K  P  F  K  R  H  *  E  S  K  *  S  R  *  S  H  Y  C  T  F  Q  V  S  G  R  *  R  W  E  C  N  C  D  I  F  Y  Y  V  C  D  S  N  G  N  N  S  R  Y  P  F  D  M  T  Y  F  *  H  *  S  L  V  V  Q  V  F  L  V  Y  N  L  T  S  T  F  *  H  M  K  L  F  I  V  S  V  E  L  N  V  K  L  L  R  S  H  F  S  L  *  D  H  F  R  D  L  S  T  H </second_frame>
            <third_frame>   A  I  I  C  K  T  S  T  *  S  L  S  V  D  P  A  K  Q  K  C  P  *  A  P  Q  F  F  P  T  Y  I  F  F  F  K  K  N  N  H  I  G  V  N  F  *  L  E  Y  K  K  L  S  C  L  E  A  I  S  S  L  I  F  Q  D  F  Y  K  R  V  N  F  K  Q  N  *  Q  N  P  I  C  L  K  A  T  F  I  L  G  V  Q  D  F  N  K  K  K  V  I  F  K  K  N  S  R  F  Q  *  K  S  D  F  *  E  E  F  K  N  P  S  F  P  R  S  N  F  Y  C  D  F  T  R  F  S  Y  E  E  R  I  F  C  T  *  S  *  T  L  S  S  S  S  *  *  S  C  S  L  Q  I  P  :  D  *  I  R  N  I  *  G  W  R  S  S  G  E  *  R  W  S  S  N  C  F  A  E  *  S  C  S   : S  F  S  Y  T  A  I  R  Q  P  V  M  L  S  *  F  *  S  S  K  S  Y  W  K  G  K  W  W  Y  S  A  A  G  S  A  *  M  D  R  A  I  F  R  S  Q   : G  Y  S  D  E  Y  *  *  V  Y  A  Q  T  Y  C  S  R  T  E  N  *  S  V  I  P  V  S  I  C  C  H  M  L  S  V  V  L  R  Q  W  C  Y  I  L  D  F  G  V  Y  G  W  W  F  L  S  R  F  S  E  K  G  Q  N  N  T  *  T  I  S  C  C  Y  L  Q  T   : G  S  Q  R  L  V  V  S  S  S  *  E  A  Y  Y  S  Q  G  F  E  T  F  E  F  A  N  Q  S  Q  R  *  C  Q  N  H  R  L  W  C  E  C  S  T  S  K  H  I  W  T  G  Q  Y  L  C  R  H  I  Q  L  Y  V   : S  R  E  N  F  R  R  C  L  *  L  Q  K  R  H  L  E  L  G  F  S  L  A  R  V  C  N  R  S  F  P  I  *  T  T  R  G  R  *  R  M  G  Q  C  L  *  T  Y  G  N  H  S  *  P  T  R  T  L  C  T  S  *  P  I  F  S  T  I  L  L  I  H  I  C  M  :  C  P  E  A  P  E  G  Q  T  V  G  K  *  S  H   : E  S  P  F  H  H  H  V  R  *  P  G  Y  R  S  W  I  L  L  H  F  R  R  T  S  I  G  N  T  Y  *  A  I  I   : G  F  L  Q  C  L  A  T  D  G  I  S  V  N  S  F  S  S  R  N  V  A  K  I  R  S  L  L  K  G  I  E  N  Q  N  E  A  D  E  A  I  I  V  L  F  K  S  P  V  G  S  V  G  S  V  T  V  T  F  S  T  M  Y  V  I  Q  M  G  T  T  P  D  I  L  L  I  *  L  T  F  D  I  N  P  W  W  C  K  C  F  W  F  T  I  *  L  L  P  F  S  T  *  S  C  L  L  S  V  L  N  *  M  *  N  F  *  D  P  I  S  P  Y  E  I  I  L  E  T  Y  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90081" stop="89897"/>
                    <exon start="89729" stop="89645"/>
                    <exon start="88472" stop="88338"/>
                    <exon start="87557" stop="87333"/>
                    <exon start="87250" stop="87068"/>
                    <exon start="86654" stop="86431"/>
                    <exon start="86320" stop="86275"/>
                    <exon start="86185" stop="86087"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLRRIQDFNKKVIFKKNSRTQVSQEAIFTVILQDLAMKKGSFAPNLKLSLPPPDEVALSKFLTESGTFKDGDLLVNRDGVRIVSQSEVAAPSVIQPSDNQLCLADFEAVKVIGKGNGGIVRLVQHKWTGQFFALKVIQMNIDESMRKHIAQELRINQSSQCPYVVICYQSFFDNGAISLILEYMDGGSLADFLKKVKTIPERFLAVICKQVLKGLWYLHHEKHIIHRDLKPSNLLINHRGDVKITDFGVSAVLASTSGLANTFVGTYNYMSPERISGGAYDYKSDIWSLGLVLLECATGHFPYKPPEGDEGWVNVYELMETIVDQPEPCAPPDQFSPQFCSFISACVQKHQKDRLSANDLMSHPFITMYDDQDIDLGSYFTSAGPPLATLTEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86093" stop="86084"/>
                    <exon start="84781" stop="84552"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIIGFLQCLATDGISVNSFSSRNVAKIRSLLKGIENQNEADEAIIVLFKSPVGSVGSVTVTFSTMYVIQMGTTPDILLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="94229" PGL_stop="97604"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94229" e_stop="94590"/>
            <exon e_start="96912" e_stop="97604"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94229" e_stop="94590" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.986">
            <gDNA_intron_boundary i_start="94591" i_stop="96911" i_length="2321"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96912" e_stop="97604" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94229" stop="94590"/>
              <exon start="96912" stop="97604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317961" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTACCCAATCCAAAAATCGCCATGAAACTAGCTTCACTTGACAGTGTGACAAATGCTCACGACGATTCCATTTGGTCGGCGGCGTGGGTCCGGTCGACGGAGGAATATCCAGCGTTGCTTCTCACCGGAGGTCTTGACGAAACTGTGAGGTTATGGGACCCGAGTAACTTCGCTTGTGTTCAAACTTTCACCGGTCATTGTCTCGGCGTTGTATCTGTTGCTACACATCCTACTCGTAGAATTGCTGCATCTGCTTCTATAGATAGCTTTATTAGAGTTTTTGAGGTTGATACTAATAACACTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAATTGCAATTTAGTCCAAGT : GGTAGCAATCTGGCAGCAGCTGGAGGTGGTAGTTCATCAGTCAAGGTGTGGGATACTAATCGGTGGGAACTTGTTACCACGATGTCCATTCCTCGTCAAGGAGCCCCACAACCATCTGATAAAAGCACCAACAAGAAATTTGTCCTTTCAGTTGCATGGAGTCCTGATGGTAGTCTTCTTGCTTGTGGATCAGTTGATGGGACTATCTCTGTTTTTGATGTAGCTCGCGCCAAGTTCCTTCACTTCTTAGATGGCCATACCATGCCTGTTCGTTCTCTCGTGTTTTCACCTTCACTTCACGACTCAAGAATACTCTTCTCAGCATCAGATGACGGTCATGTGCATATGTATGATGCTGAGGGGAAAACATTGCTCACGTCTTTATCGGGTCATGCAAGTTGGGTTCTGAGTGTTGATATCTCTCCAGACGGGGCAGCAATTGCAACGGGGTCAAGTGACAAGACGGTTAGGCTATGGGATCTTAAGATGAGAGCGGCTACGCAAACTTTAACCAACCATACAGATCAGGTTTGGGCTGTGGCTTTTGGACCAACATCAAGGACTGATGTTAGGTCCTGTATGCTTGCAAGTGTGTCTGATGACAAGAGTTTATCATTCTATCAGTACTCTTAACAGTTGCAGCCATTGCATGCTTTGTATGTTGGTATGATGTCTCAAGAAAATATTTGACTT</gDNA_template>
            <first_frame> L  Y  P  I  Q  K  S  P  *  N  *  L  H  L  T  V  *  Q  M  L  T  T  I  P  F  G  R  R  R  G  S  G  R  R  R  N  I  Q  R  C  F  S  P  E  V  L  T  K  L  *  G  Y  G  T  R  V  T  S  L  V  F  K  L  S  P  V  I  V  S  A  L  Y  L  L  L  H  I  L  L  V  E  L  L  H  L  L  L  *  I  A  L  L  E  F  L  R  L  I  L  I  T  L  L  L  L  S  K  L  L  L  L  K  S  G  N  C  N  L  V  Q  V :   V  A  I  W  Q  Q  L  E  V  V  V  H  Q  S  R  C  G  I  L  I  G  G  N  L  L  P  R  C  P  F  L  V  K  E  P  H  N  H  L  I  K  A  P  T  R  N  L  S  F  Q  L  H  G  V  L  M  V  V  F  L  L  V  D  Q  L  M  G  L  S  L  F  L  M  *  L  A  P  S  S  F  T  S  *  M  A  I  P  C  L  F  V  L  S  C  F  H  L  H  F  T  T  Q  E  Y  S  S  Q  H  Q  M  T  V  M  C  I  C  M  M  L  R  G  K  H  C  S  R  L  Y  R  V  M  Q  V  G  F  *  V  L  I  S  L  Q  T  G  Q  Q  L  Q  R  G  Q  V  T  R  R  L  G  Y  G  I  L  R  *  E  R  L  R  K  L  *  P  T  I  Q  I  R  F  G  L  W  L  L  D  Q  H  Q  G  L  M  L  G  P  V  C  L  Q  V  C  L  M  T  R  V  Y  H  S  I  S  T  L  N  S  C  S  H  C  M  L  C  M  L  V  *  C  L  K  K  I  F  D   </first_frame>
            <second_frame>  S  T  Q  S  K  N  R  H  E  T  S  F  T  *  Q  C  D  K  C  S  R  R  F  H  L  V  G  G  V  G  P  V  D  G  G  I  S  S  V  A  S  H  R  R  S  *  R  N  C  E  V  M  G  P  E  *  L  R  L  C  S  N  F  H  R  S  L  S  R  R  C  I  C  C  Y  T  S  Y  S  *  N  C  C  I  C  F  Y  R  *  L  Y  *  S  F  *  G  *  Y  *  *  H  Y  C  Y  S  R  S  S  S  F  *  S  L  A  I  A  I  *  S  K   : W  *  Q  S  G  S  S  W  R  W  *  F  I  S  Q  G  V  G  Y  *  S  V  G  T  C  Y  H  D  V  H  S  S  S  R  S  P  T  T  I  *  *  K  H  Q  Q  E  I  C  P  F  S  C  M  E  S  *  W  *  S  S  C  L  W  I  S  *  W  D  Y  L  C  F  *  C  S  S  R  Q  V  P  S  L  L  R  W  P  Y  H  A  C  S  F  S  R  V  F  T  F  T  S  R  L  K  N  T  L  L  S  I  R  *  R  S  C  A  Y  V  *  C  *  G  E  N  I  A  H  V  F  I  G  S  C  K  L  G  S  E  C  *  Y  L  S  R  R  G  S  N  C  N  G  V  K  *  Q  D  G  *  A  M  G  S  *  D  E  S  G  Y  A  N  F  N  Q  P  Y  R  S  G  L  G  C  G  F  W  T  N  I  K  D  *  C  *  V  L  Y  A  C  K  C  V  *  *  Q  E  F  I  I  L  S  V  L  L  T  V  A  A  I  A  C  F  V  C  W  Y  D  V  S  R  K  Y  L  T  </second_frame>
            <third_frame>   L  P  N  P  K  I  A  M  K  L  A  S  L  D  S  V  T  N  A  H  D  D  S  I  W  S  A  A  W  V  R  S  T  E  E  Y  P  A  L  L  L  T  G  G  L  D  E  T  V  R  L  W  D  P  S  N  F  A  C  V  Q  T  F  T  G  H  C  L  G  V  V  S  V  A  T  H  P  T  R  R  I  A  A  S  A  S  I  D  S  F  I  R  V  F  E  V  D  T  N  N  T  I  A  T  L  E  A  P  P  S  E  V  W  Q  L  Q  F  S  P  S  :  G  S  N  L  A  A  A  G  G  G  S  S  S  V  K  V  W  D  T  N  R  W  E  L  V  T  T  M  S  I  P  R  Q  G  A  P  Q  P  S  D  K  S  T  N  K  K  F  V  L  S  V  A  W  S  P  D  G  S  L  L  A  C  G  S  V  D  G  T  I  S  V  F  D  V  A  R  A  K  F  L  H  F  L  D  G  H  T  M  P  V  R  S  L  V  F  S  P  S  L  H  D  S  R  I  L  F  S  A  S  D  D  G  H  V  H  M  Y  D  A  E  G  K  T  L  L  T  S  L  S  G  H  A  S  W  V  L  S  V  D  I  S  P  D  G  A  A  I  A  T  G  S  S  D  K  T  V  R  L  W  D  L  K  M  R  A  A  T  Q  T  L  T  N  H  T  D  Q  V  W  A  V  A  F  G  P  T  S  R  T  D  V  R  S  C  M  L  A  S  V  S  D  D  K  S  L  S  F  Y  Q  Y  S  *  Q  L  Q  P  L  H  A  L  Y  V  G  M  M  S  Q  E  N  I  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0011D12.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94231" stop="94590"/>
                    <exon start="96912" stop="97544"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPNPKIAMKLASLDSVTNAHDDSIWSAAWVRSTEEYPALLLTGGLDETVRLWDPSNFACVQTFTGHCLGVVSVATHPTRRIAASASIDSFIRVFEVDTNNTIATLEAPPSEVWQLQFSPSGSNLAAAGGGSSSVKVWDTNRWELVTTMSIPRQGAPQPSDKSTNKKFVLSVAWSPDGSLLACGSVDGTISVFDVARAKFLHFLDGHTMPVRSLVFSPSLHDSRILFSASDDGHVHMYDAEGKTLLTSLSGHASWVLSVDISPDGAAIATGSSDKTVRLWDLKMRAATQTLTNHTDQVWAVAFGPTSRTDVRSCMLASVSDDKSLSFYQYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 52368 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 3273 bytes was the average size of a spliced alignment
$ 19488 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1771 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 31 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-21 08:17:18
-->
