<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-06 11:57:07"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373616" ref_strand="+" ref_description="SGN-E373616 [TUS-33-I6]">
      <seq>tcaactccattcctaaaggaacttcccaagtggtattacaagctggtcgtttgtccaaagttgctaatgctattgccctcgccttgtgtcaacgaggaattcaggttatcacgttagacgaagaagagtacaagggacttaaagcaaggtttacccctgaggctgcagctaatttggtcttgttgaaaagtacttgtgtttcaaagacgtggttagtagatgatggattgagtgaagatgaacaattgaaagcaccaaaaggaacattgtttattccttattcaccatttccaccaaagaaagttcgtgaggattgcttctacttgagcacaccagccatgatttgtccaaaacatgttcaaaatgtagactcttgtgagaactggctgccaagaagagtgatgagtgcatcgagaatagctggaattttgcacgcgtttgaaggttggaacgagcacgagtgtggtgacatgatgtttgatattgacaaagtatggaaagctagtcttgatcatggtttttcaccattagatgtagaaataatgtagattattattttgtaagatcacagttataagcttgtaataatggttaataattcctagcaactcaatggcctgtactatatgtaataaataacttttgacaaatttaaaagaccattattacctaaacacaaacatataaagatccatttttcattacaaaaatcaactttattaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="2624" stop="1038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2324" g_stop="2221" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2220" i_stop="2127" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2126" g_stop="2025" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="206" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2024" i_stop="1939" i_length="86">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1938" g_stop="1765" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="380" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1764" i_stop="1681" i_length="84">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1680" g_stop="1345" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="716" r_length="336" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="722" polyA_stop="749"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E373616" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2324" e_stop="2221"/>
          <exon e_start="2126" e_stop="2025"/>
          <exon e_start="1938" e_stop="1765"/>
          <exon e_start="1680" e_stop="1345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAGGTATTCATAATCTTCTTACACTGTCCTAGCTCCCTTGACTTTGGTTTTTCTTTTAATTTCTCCAATCCATCGTAAATTTTGTACACATATATAGGTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAGGTAGTACAGTACTATAACATATAATAATCGTGATATAATTCAAGAATTAGCAAGTTGTTGATTGATTTTGACGCGATATATTGCAGACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAGGTCAGAAAGGATTATTCATAGTAAATTCTTTTTTTCAAGTTTTGTTTGTTAATTGACGATTGATTTTTTGTCTTTTAATTGAAGAACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATAAGGATCCATTTTTCATTACAAAAATCAACT</genome_strand>
        <mrna_strand>TCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG..............................................................................................GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG......................................................................................ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAG....................................................................................AACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATAAAGATCCATTTTTCATTACAAAAATCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374823" ref_strand="+" ref_description="SGN-E374823 [TUS-14-B2](-)">
      <seq>attggtagatgaaagtagcctagttgttgctgtggttctcaactccattcctaaaggaacttcccaagtggtattacaagctggtcgtttgtccaaagttgctaatgctattgccctcgccttgtgtcaacgaggaattcaggttatcacgttagacgaagaagagtacaagggacttaaagcaaggtttacccctgaggctgcagctaatttggtcttgttgaaaagtacttgtgtttcaaagacgtggttagtagatgatggattgagtgaagatgaacaattgaaagcaccaaaaggaacattgtttattccttattcaccatttccaccaaagaaagttcgtgaggattgcttctacttgagcacaccagccatgatttgtccaaaacatgttcaaaatgtagactcttgtgagaactggctgccaagaagagtgatgagtgcatcgagaatagctggaattttgcacgcgtttgaaggttggaacgagcacgagtgtggtgacatgatgtttgatattgacaaagtatggaaagctagtcttgatcatggtttttcaccattagatgtagaaataatgtagattattattttgtaagatcacagttataagcttgtaataatggttaataattcctagcaactcaatggcctgtactatatgtaataaataacttttgacaaatttaaaagaccattattacctaaacacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="2662" stop="1074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2362" g_stop="2221" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2220" i_stop="2127" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2126" g_stop="2025" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="244" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2024" i_stop="1939" i_length="86">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1938" g_stop="1765" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="418" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1764" i_stop="1681" i_length="84">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1680" g_stop="1375" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="724" r_length="306" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E374823" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2362" e_stop="2221"/>
          <exon e_start="2126" e_stop="2025"/>
          <exon e_start="1938" e_stop="1765"/>
          <exon e_start="1680" e_stop="1375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAGGTATTCATAATCTTCTTACACTGTCCTAGCTCCCTTGACTTTGGTTTTTCTTTTAATTTCTCCAATCCATCGTAAATTTTGTACACATATATAGGTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAGGTAGTACAGTACTATAACATATAATAATCGTGATATAATTCAAGAATTAGCAAGTTGTTGATTGATTTTGACGCGATATATTGCAGACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAGGTCAGAAAGGATTATTCATAGTAAATTCTTTTTTTCAAGTTTTGTTTGTTAATTGACGATTGATTTTTTGTCTTTTAATTGAAGAACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATA</genome_strand>
        <mrna_strand>ATTGGTAGATGAAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG..............................................................................................GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG......................................................................................ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAG....................................................................................AACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206213" ref_strand="-" ref_description="SGN-E206213 [cLEC-29-D19]">
      <seq>tttccaccaaagaaagttcgtgaggattgcttctacttgagcacaccagccatgatttgtccataacatgttcaaaatgtagactcttgtcagaactggctgccaagaagagtgatgagtgcatcgagaatagctggaattttgcacgcgtttgaaggttggaacgagcacgagtgtggtgacatgatgtttgatattgacaaagtatggaaagctagtcttgatcatggtttttcaccattagatgtagaaataatgtagattattattttgtaagatcacagttataagcttgtaataatggttaataattcctagcaactcaatggcctgtactatatgtaataaataacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="2157" stop="1116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1857" g_stop="1765" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1764" i_stop="1681" i_length="84">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1680" g_stop="1416" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="358" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E206213" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206213" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1857" e_stop="1765"/>
          <exon e_start="1680" e_stop="1416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAGGTCAGAAAGGATTATTCATAGTAAATTCTTTTTTTCAAGTTTTGTTTGTTAATTGACGATTGATTTTTTGTCTTTTAATTGAAGAACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTG</genome_strand>
        <mrna_strand>TTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCATAACATGTTCAAAATGTAGACTCTTGTCAG....................................................................................AACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305714" ref_strand="+" ref_description="SGN-E305714 [cLEX-14-I13]">
      <seq>taaaggaacttcccaagtggtattacaagctggtcgtttgtccaaagttgctaatgctattgccctcgccttgtgtcaacgaggaattcaggttatcacgttagacgaagaagagtacaagggacttaaagcaaggtttacccctgaggctgcagctaatttggtcttgttgaaaagtacttgtgtttcaaagacgtggttagtagatgatggattgagtgaagatgaacaattgaaagcaccaaaaggaacattgtttattccttattcaccatttccaccaaagaaagttcgtgaggattgcttctacttgagcacaccagccatgatttgtccaaaacatgttcaaaatgtagactcttgtgagaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="2611" stop="1460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2311" g_stop="2221" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2220" i_stop="2127" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2126" g_stop="2025" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="193" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2024" i_stop="1939" i_length="86">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1938" g_stop="1765" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="367" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1764" i_stop="1681" i_length="84">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1680" g_stop="1675" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="373" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E305714" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2311" e_stop="2221"/>
          <exon e_start="2126" e_stop="2025"/>
          <exon e_start="1938" e_stop="1765"/>
          <exon e_start="1680" e_stop="1675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAGGTATTCATAATCTTCTTACACTGTCCTAGCTCCCTTGACTTTGGTTTTTCTTTTAATTTCTCCAATCCATCGTAAATTTTGTACACATATATAGGTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAGGTAGTACAGTACTATAACATATAATAATCGTGATATAATTCAAGAATTAGCAAGTTGTTGATTGATTTTGACGCGATATATTGCAGACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAGGTCAGAAAGGATTATTCATAGTAAATTCTTTTTTTCAAGTTTTGTTTGTTAATTGACGATTGATTTTTTGTCTTTTAATTGAAGAACTGG</genome_strand>
        <mrna_strand>TAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG..............................................................................................GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG......................................................................................ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAG....................................................................................AACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214795" ref_strand="+" ref_description="SGN-E214795 [cLEC-79-F11]">
      <seq>ttggatttatagtcacacatttgttatcgagaggaatttgttcaaggatctcaaattacaaacttgggctattccaaagtttcgcaaacaatactttagtcaatggcaaagaaagagtattaataatttgatcaaggaagccatcatggaagcagatcagaaaggcgtaaaggttttgagcctcggactcttaaatcaggacgagaagttgaataacaatggtgaaatttgcataaggaagcatcctgagctgaaagttaaattggtagatggaagtagcctagttgttgctgtggttctcaactccattcctaaaggaacttcccaagtggtattacaagctggtcgtttgtccaaagttgctaatgctattgccctcgccttgtgtcaacgaggaattcaggttatcacgttagacgaagaagagtacaagggacttaaagcaaggtttacccctgaggctgcagctaatttggtcttgttgaaaagtacttgtgtttcaaagacgtggttagtagatgatggattgagtgaagatgaacaattgaaagcaccaaaagggacattgtttattccttattcaccatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3135" stop="1554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2835" g_stop="2745" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2744" i_stop="2672" i_length="73">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2671" g_stop="2564" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="199" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2563" i_stop="2425" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2424" g_stop="2221" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="403" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2220" i_stop="2127" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2126" g_stop="2025" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="505" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2024" i_stop="1939" i_length="86">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1938" g_stop="1854" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="590" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E214795" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2835" e_stop="2745"/>
          <exon e_start="2671" e_stop="2564"/>
          <exon e_start="2424" e_stop="2221"/>
          <exon e_start="2126" e_stop="2025"/>
          <exon e_start="1938" e_stop="1854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAAGTAATAATCTATATCTTATTCAACATTGTTTTGGATCTGGTATCATTTATCATGATTATTTTTTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAGGCAAGTAAACTTAATGACTCTATTTGCCCCCTCTTTATGTGAGACGATTCAAGTTCAAAGGTCAAACTATCTAGTTTCAGATATAGAATCTTTAATCTTTTTAAAGATCTAACGAGCACAAATGAAACTTACTTTATAGGACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAGGTATTCATAATCTTCTTACACTGTCCTAGCTCCCTTGACTTTGGTTTTTCTTTTAATTTCTCCAATCCATCGTAAATTTTGTACACATATATAGGTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAGGTAGTACAGTACTATAACATATAATAATCGTGATATAATTCAAGAATTAGCAAGTTGTTGATTGATTTTGACGCGATATATTGCAGACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTC</genome_strand>
        <mrna_strand>TTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA.........................................................................TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG...........................................................................................................................................GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG..............................................................................................GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG......................................................................................ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGGACATTGTTTATTCCTTATTCACCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212537" ref_strand="+" ref_description="SGN-E212537 [cLEC-74-K16]">
      <seq>caaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtaccactcactacatcacacgcaattcagaactaattattctcttttcatgccaatatatgactatatttttggtacaatggacaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcaccttacacatctaacaaccttacaatccatctatcatctccgtctaggattttcatcgttggcctcaaagcctcacatgactagctctaagtggtatttgtggttaatgtggcctgtcacgctatggtcaatactcattacttggatttatagtcacacatttgttatcgagaggaatttgttcaaggatctcaaattacaaacttgggctattccaaagtttcgcaaacaatactttagtcaatggcaaagaaagagtattaataatttgatcaaggaagccatcatggaagcagatcagaaaggcgtaaaggttttgagcctcggactcttaaatcaggacgagaagttgaataacaatggtgaaatttgcataaggaagcatcctgagctgaaagttaaattggtagatggaagtagcctagttgttgctgtggttctcaactccattccctaagaacttccccagtggtattacaagctggtcgtttggtcaaagttgctaatgctattgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3563" stop="1948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3263" g_stop="3209" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3208" i_stop="3127" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3126" g_stop="2745" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="437" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2744" i_stop="2672" i_length="73">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2671" g_stop="2564" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="545" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2563" i_stop="2425" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2424" g_stop="2248" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="721" r_length="176" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E212537" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3263" e_stop="3209"/>
          <exon e_start="3126" e_stop="2745"/>
          <exon e_start="2671" e_stop="2564"/>
          <exon e_start="2424" e_stop="2248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAAGTAATAATCTATATCTTATTCAACATTGTTTTGGATCTGGTATCATTTATCATGATTATTTTTTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAGGCAAGTAAACTTAATGACTCTATTTGCCCCCTCTTTATGTGAGACGATTCAAGTTCAAAGGTCAAACTATCTAGTTTCAGATATAGAATCTTTAATCTTTTTAAAGATCTAACGAGCACAAATGAAACTTACTTTATAGGACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCC</genome_strand>
        <mrna_strand>CAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC..................................................................................GTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA.........................................................................TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG...........................................................................................................................................GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCCTAA-GAACTTCCCCAGTGGTATTACAAGCTGGTCGTTTGGTCAAAGTTGCTAATGCTATTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201112" ref_strand="+" ref_description="SGN-E201112 [cLEC-10-E24]">
      <seq>acaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcaccttacacatctaacaaccttacaatccatctatcatctccgtctaggattttcatcgttggcctcaaagcctcacatgactagctctaagtggtatttgtggttaatgtggcctgtcacgctatggtcaatactcattacttggatttatagtcacacatttgttatcgagaggaatttgttcaaggatctcaaattacaaacttgggctattccaaagtttcgcaaacaatactttagtcaatggcaaagaaagagtattaataatttgatcaaggaagccatcatggaagcagatcagaaaggcgtaaaggttttgagcctcggactcttaaatcaggacgagaagttgaataacaatggtgaaatttgcataaggaagcatcctgagctgaaagttaaattggtagatggaagtagcctagttgttgctgtggttctcaactccattcctaaaggaacttcccaagtggtattacaagctggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3343" stop="1976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3043" g_stop="2745" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2744" i_stop="2672" i_length="73">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2671" g_stop="2564" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="407" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2563" i_stop="2425" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2424" g_stop="2276" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="556" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E201112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3043" e_stop="2745"/>
          <exon e_start="2671" e_stop="2564"/>
          <exon e_start="2424" e_stop="2276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAAGTAATAATCTATATCTTATTCAACATTGTTTTGGATCTGGTATCATTTATCATGATTATTTTTTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAGGCAAGTAAACTTAATGACTCTATTTGCCCCCTCTTTATGTGAGACGATTCAAGTTCAAAGGTCAAACTATCTAGTTTCAGATATAGAATCTTTAATCTTTTTAAAGATCTAACGAGCACAAATGAAACTTACTTTATAGGACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCG</genome_strand>
        <mrna_strand>ACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA.........................................................................TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG...........................................................................................................................................GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208862" ref_strand="+" ref_description="SGN-E208862 [cLEC-51-M4]">
      <seq>cattgtaactttgaggtgattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtaccactcactacatcacacgcaattcagaactaattattctcttttcatgccaatatatgactatatttttggtacaatggacaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcaccttacacatctaacaaccttacaatccatctatcatctccgtctaggattttcatcgttggcctcaaagcctcacatgactagctctaagtggtatttgtggttaatgtggcctgtcacgctatggtcaatactcattacttggatttatagtcacacatttgttatcgagaggaatttgttcaaggatctcaaattacaaacttgggctattccaaagtttcgcaaacaatactttagtcaatggcaaagaaagagtattaataatttgatcaaggaagccatcatggaagcagatcagaaaggcgtaaaggttttgagcctcggactcttaaatcaggacgagaagttgaataacaatggtgaaatttgcataaggaaacatcctgagctgaaagttaaattggtagatggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3585" stop="2047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3285" g_stop="3209" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3208" i_stop="3127" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3126" g_stop="2745" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="459" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2744" i_stop="2672" i_length="73">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2671" g_stop="2564" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="567" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2563" i_stop="2425" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2424" g_stop="2347" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="645" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E208862" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3285" e_stop="3209"/>
          <exon e_start="3126" e_stop="2745"/>
          <exon e_start="2671" e_stop="2564"/>
          <exon e_start="2424" e_stop="2347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAAGTAATAATCTATATCTTATTCAACATTGTTTTGGATCTGGTATCATTTATCATGATTATTTTTTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAGGCAAGTAAACTTAATGACTCTATTTGCCCCCTCTTTATGTGAGACGATTCAAGTTCAAAGGTCAAACTATCTAGTTTCAGATATAGAATCTTTAATCTTTTTAAAGATCTAACGAGCACAAATGAAACTTACTTTATAGGACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGT</genome_strand>
        <mrna_strand>CATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC..................................................................................GTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA.........................................................................TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG...........................................................................................................................................GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAACATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204135" ref_strand="+" ref_description="SGN-E204135 [cLEC-27-O23]">
      <seq>tcatgattatttattttttaacagtactttagtcaatggcaaagaaagagtattaataatttgatcaaggaagccatcatggaagctgatcaaaaaggcttaaaggtttagagcctcagactctaaaatcacgacgagaagttgaataacaatggctaaatttgcataaggaagcatcctcagctgaaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="2995" stop="2064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2695" g_stop="2564" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2563" i_stop="2425" i_length="139">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2424" g_stop="2364" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="193" r_length="61" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E204135" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2695" e_stop="2564"/>
          <exon e_start="2424" e_stop="2364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGATTATTTTTTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAGGCAAGTAAACTTAATGACTCTATTTGCCCCCTCTTTATGTGAGACGATTCAAGTTCAAAGGTCAAACTATCTAGTTTCAGATATAGAATCTTTAATCTTTTTAAAGATCTAACGAGCACAAATGAAACTTACTTTATAGGACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTA</genome_strand>
        <mrna_strand>TCATGATTATTTATTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCTGATCAAAAAGGCTTAAAGGTTTAGAGCCTCAGACTCTAAAATCAC...........................................................................................................................................GACGAGAAGTTGAATAACAATGGCTAAATTTGCATAAGGAAGCATCCTCAGCTGAAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208054" ref_strand="+" ref_description="SGN-E208054 [cLEC-34-M16]">
      <seq>gcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgaggtgattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtaccactcactacattacacgcaattcagaactaattattctcttttcatgccaatatatgactatatttttggtacaatggacaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcaccttacacatctaacaaccttacaatccatctatcatctgcgtctaggattttcatcgttggcctcaaagcctcacatgactagctctaagtggtatttgtggttaatgtggcctgtcacgctatggtcaatactcattacttggatttatagtcacacatttgttatcgagaggaatttgttcaaggatctcaaattacaaacttgggctattccaaagtttcgcaaacaatactttagtcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3666" stop="2440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3366" g_stop="3209" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3208" i_stop="3127" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3126" g_stop="2745" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="540" r_length="382" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2744" i_stop="2672" i_length="73">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2671" g_stop="2659" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="553" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E208054" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3366" e_stop="3209"/>
          <exon e_start="3126" e_stop="2745"/>
          <exon e_start="2671" e_stop="2659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAAGTAATAATCTATATCTTATTCAACATTGTTTTGGATCTGGTATCATTTATCATGATTATTTTTTTTTTAACAGTACTTTAGTCAAT</genome_strand>
        <mrna_strand>GCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC..................................................................................GTACCACTCACTACATTACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTGCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA.........................................................................TACTTTAGTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210563" ref_strand="+" ref_description="SGN-E210563 [cLEC-35-J16]">
      <seq>gattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtgagtaatcttcttacctctccctacacatatactctctgacgaatttttacactatcacaacctgtcgatgtcactgcaggtaccactcactacatcacacgcaattcagaactaattattctcttttcatgccaatatatgactatatttttggtacaatggacaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcaccttacacatctaacaaccttacaatccatctatcatctccgtctaggattttcatcgttggcctcaaagcctcacatgactagctctaagtggtatttgtggttaatgtggcctgtcacgctatggtcaatactcattacttggatttatagtcacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3568" stop="2516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3268" g_stop="2816" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E210563" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3268" e_stop="2816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACAT</genome_strand>
        <mrna_strand>GATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205218" ref_strand="+" ref_description="SGN-E205218 [cLEC-16-J20]">
      <seq>gatgtattttgacagcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgaggtgattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtgagtaatcttcttacctctccctacacatatactctctgacgaatttttacactatcacaacctgtcgatgtcactgcaggtaccactcactacatcacacgcaattcagaactaattattctcttttcatgccaatatatgactatatttttggtacaatggacaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcaccttacacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3743" stop="2666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3443" g_stop="2966" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E205218" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3443" e_stop="2966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATC</genome_strand>
        <mrna_strand>GATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201324" ref_strand="+" ref_description="SGN-E201324 [cLEC-4-O9]">
      <seq>gatgtattttgacagcatttattcatccggttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgaggtgattccaaagaggatcttctctctgtttccacctctcaagtacttgatatatactgcctcgtgagtaatcttcttacctctccctacacatatactctctgacgaatttttacactatcacaacctgtcgatgtcactgcaggtaccactcactacatcacacgcaattcacaactaattattctcttttcatgccaatatatgactatatttttggtacaatggacaagtccagtgacacattgtatgaaaagtcacttgagaaaaaagcggaactgcctcatgtggttcacctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="3743" stop="2672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3443" g_stop="2972" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E201324" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3443" e_stop="2972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTA</genome_strand>
        <mrna_strand>GATGTATTTTGACAGCATTTATTCATCCGGTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGAGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACTGCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCACAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301485" ref_strand="+" ref_description="SGN-E301485 [cLEW-23-C11]">
      <seq>gttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgaggtgattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtaccactcactacattacacgcaattcagaactaattattctcttttcatgccaatatatgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4203" stop="2761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3903" g_stop="3817" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3731" g_stop="3499" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="320" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3498" i_stop="3429" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3428" g_stop="3209" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="540" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3208" i_stop="3127" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3126" g_stop="3061" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="606" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E301485" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3903" e_stop="3817"/>
          <exon e_start="3731" e_stop="3499"/>
          <exon e_start="3428" e_stop="3209"/>
          <exon e_start="3126" e_stop="3061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTA</genome_strand>
        <mrna_strand>GTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC..................................................................................GTACCACTCACTACATTACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211564" ref_strand="+" ref_description="SGN-E211564 [cLEC-67-I9]">
      <seq>ctaaacctggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgangtgattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtaccactcactacatcacacgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4549" stop="2801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4249" g_stop="4197" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="3817" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="265" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3731" g_stop="3499" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="498" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3498" i_stop="3429" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3428" g_stop="3209" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="718" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3208" i_stop="3127" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3126" g_stop="3101" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="744" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E211564" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4249" e_stop="4197"/>
          <exon e_start="4028" e_stop="3817"/>
          <exon e_start="3731" e_stop="3499"/>
          <exon e_start="3428" e_stop="3209"/>
          <exon e_start="3126" e_stop="3101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAAT</genome_strand>
        <mrna_strand>CTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGANGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC..................................................................................GTACCACTCACTACATCACACGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212253" ref_strand="+" ref_description="SGN-E212253 [cLEC-75-J5]">
      <seq>taaacctggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacnatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgaggtgattccaaagtggatcttctctctgtttccacctctcaagtacttgatatatacgtcctcgtaccactcactacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4548" stop="2899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4248" g_stop="4197" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="3817" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="264" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3731" g_stop="3499" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="497" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3498" i_stop="3429" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3428" g_stop="3209" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="717" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3208" i_stop="3127" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3126" g_stop="3109" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="735" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E212253" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4248" e_stop="4197"/>
          <exon e_start="4028" e_stop="3817"/>
          <exon e_start="3731" e_stop="3499"/>
          <exon e_start="3428" e_stop="3209"/>
          <exon e_start="3126" e_stop="3109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCA</genome_strand>
        <mrna_strand>TAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACNATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC..................................................................................GTACCACTCACTACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374751" ref_strand="+" ref_description="SGN-E374751 [TUS-14-B2]">
      <seq>tctaaacctggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaacaacttgggccattgtaactttgaggtgattcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4550" stop="2962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4250" g_stop="4197" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="3817" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="266" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3731" g_stop="3499" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="499" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3498" i_stop="3429" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3428" g_stop="3262" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="666" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E374751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4250" e_stop="4197"/>
          <exon e_start="4028" e_stop="3817"/>
          <exon e_start="3731" e_stop="3499"/>
          <exon e_start="3428" e_stop="3262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCA</genome_strand>
        <mrna_strand>TCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303846" ref_strand="+" ref_description="SGN-E303846 [cLEX-4-A1]">
      <seq>aacctggaattctctcagaatggccatgggcaaaccttggcaactgtaagaacttggtgtcggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatattgaacgggctattatactatgctggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatatcggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctatgtcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttatatagctacaatcactctttatgttatctatactgatttcatgaacaacttgggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4546" stop="2984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4246" g_stop="4197" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="3817" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="262" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3731" g_stop="3499" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="496" r_length="234" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3498" i_stop="3429" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3428" g_stop="3284" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="641" r_length="145" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E303846" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4246" e_stop="4197"/>
          <exon e_start="4028" e_stop="3817"/>
          <exon e_start="3731" e_stop="3499"/>
          <exon e_start="3428" e_stop="3284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTAT-TCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCA</genome_strand>
        <mrna_strand>AACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTGTAAG........................................................................................................................................................................AACTTGGTGTCGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTGAACGGGCTATTATACTATGCTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATCGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATGTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTATATAGCTACAATCACTCTTTATGTTATCTATACTGATTTCATGAACAACTTGGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306886" ref_strand="+" ref_description="SGN-E306886 [cLEY-11-P8]">
      <seq>tggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatttcatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4542" stop="2995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="4197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="3817" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="258" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3731" g_stop="3499" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="491" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3498" i_stop="3429" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3428" g_stop="3295" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="625" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E306886" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="4197"/>
          <exon e_start="4028" e_stop="3817"/>
          <exon e_start="3731" e_stop="3499"/>
          <exon e_start="3428" e_stop="3295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAAC</genome_strand>
        <mrna_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213371" ref_strand="+" ref_description="SGN-E213371 [cLEC-71-O13]">
      <seq>tggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaagtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctaacatcactctttatggtatctttactgatttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4542" stop="2998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="4197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="3817" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="258" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3731" g_stop="3499" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="491" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3498" i_stop="3429" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3428" g_stop="3298" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="622" r_length="131" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E213371" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="4197"/>
          <exon e_start="4028" e_stop="3817"/>
          <exon e_start="3731" e_stop="3499"/>
          <exon e_start="3428" e_stop="3298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATG</genome_strand>
        <mrna_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAAGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTAACATCACTCTTTATGGTATCTTTACTGATTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307992" ref_strand="+" ref_description="SGN-E307992 [cLEY-14-I13]">
      <seq>tggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4542" stop="3003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="4197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="3817" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="258" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3731" g_stop="3499" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="491" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3498" i_stop="3429" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3428" g_stop="3303" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="617" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E307992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="4197"/>
          <exon e_start="4028" e_stop="3817"/>
          <exon e_start="3731" e_stop="3499"/>
          <exon e_start="3428" e_stop="3303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATT</genome_strand>
        <mrna_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304292" ref_strand="+" ref_description="SGN-E304292 [cLEX-12-G23]">
      <seq>taaacctggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4548" stop="3005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4248" g_stop="4197" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="3817" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="264" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3731" g_stop="3499" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="497" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3498" i_stop="3429" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3428" g_stop="3305" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="621" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E304292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4248" e_stop="4197"/>
          <exon e_start="4028" e_stop="3817"/>
          <exon e_start="3731" e_stop="3499"/>
          <exon e_start="3428" e_stop="3305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGA</genome_strand>
        <mrna_strand>TAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207391" ref_strand="+" ref_description="SGN-E207391 [cLEC-36-I20]">
      <seq>cctggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttatgttatctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4544" stop="3008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4244" g_stop="4197" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="3817" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="260" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3731" g_stop="3499" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="493" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3498" i_stop="3429" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3428" g_stop="3308" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="614" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E207391" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4244" e_stop="4197"/>
          <exon e_start="4028" e_stop="3817"/>
          <exon e_start="3731" e_stop="3499"/>
          <exon e_start="3428" e_stop="3308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTAC</genome_strand>
        <mrna_strand>CCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202413" ref_strand="+" ref_description="SGN-E202413 [cLEC-6-C17]">
      <seq>tctaaacctggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcattctcatcatcactcctctattgttactcaacctatcagtgcatttattcatccgtttgctgaggtcgcatcatattatgccatctttgctgttcctgtaatcgcaactgaactcactgggactacttctatagctacaatcactctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4550" stop="3019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4250" g_stop="4197" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="3817" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="266" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3731" g_stop="3499" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="499" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3498" i_stop="3429" i_length="70">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.553" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3428" g_stop="3319" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="609" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E202413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4250" e_stop="4197"/>
          <exon e_start="4028" e_stop="3817"/>
          <exon e_start="3731" e_stop="3499"/>
          <exon e_start="3428" e_stop="3319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTGGTAAGTCCGTCTTTTAACTAGCTAGTAAAGACCTTTTATTTCATGAACTAAAAGGGATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTAT</genome_strand>
        <mrna_strand>TCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG......................................................................CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213772" ref_strand="+" ref_description="SGN-E213772 [cLEC-76-I5]">
      <seq>aatggccatgggcaaaccttggcaactttaagtacttggcgctggcaccatgtgatggtcatagcatatactcagtcttgagggatggagatgttggatacatagccatacttccatgtctactcttcatatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataataaaattgttgatagaagcattgagtttgatccagttgatagataaaacaactgggatgatcaaattatatttaacgggctattatactatgttggagacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgcatcaccattttctctattcgcgttatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4528" stop="3238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4228" g_stop="4197" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.680" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="3817" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="244" r_length="212" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.561" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3731" g_stop="3538" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="438" r_length="194" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E213772" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4228" e_stop="4197"/>
          <exon e_start="4028" e_stop="3817"/>
          <exon e_start="3731" e_stop="3538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATT</genome_strand>
        <mrna_strand>AATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGCGCTGGCACCATGTGATGGTCATAGCATATACTCAGTCTTGAGGGATGGAGATGTTGGATACATAGCCATACTTCCATGTCTACTCTTCATATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAAAATTGTTGATAGAAGCATTGAGTTTGATCCAGTTGATAGATAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGAGACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287074" ref_strand="+" ref_description="SGN-E287074 [cLES-6-N4]">
      <seq>tggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtggtggattcattgtaactgcattggcccatattggtcctgttgagtttatctattattggtttcatagagctctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4542" stop="3267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="4197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="3817" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="258" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3731" g_stop="3567" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="423" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E287074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="4197"/>
          <exon e_start="4028" e_stop="3817"/>
          <exon e_start="3731" e_stop="3567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCA</genome_strand>
        <mrna_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297386" ref_strand="+" ref_description="SGN-E297386 [cLEW-14-D14]">
      <seq>tggaattctctcagaatggccatgggcaaaccttggcaactttaagtacttggtgttggcaccatttgttggtcatagcatatactcattcttgagggatggagatattggatacatagccatacttccatttctactcttcagatttattcacaaccagatatggatatcgttatcgcgccacaggactgctaagggtaataatagaattgttgatagaagcattgagtttgatcaagttgatagagaaaacaactgggatgatcaaattatatttaacgggctattatactatgttggatacctgagaatggaacaagttcatcacttgcctctatggagaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="4542" stop="3343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="4197" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4028" g_stop="3817" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="258" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3731" g_stop="3643" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="347" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E297386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="4197"/>
          <exon e_start="4028" e_stop="3817"/>
          <exon e_start="3731" e_stop="3643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAGGTACATATATGTTGTTTTGCAGTACACATCAAAAACTTTTTCTTATTGTTGTGTTTCTAATATAATTAATGCATTATATCGATCATAATTTCTATGTCATCTAAAAGTTTAAGTCAGTAGTTTATTTATGTTAGCTAATTAATTATGTTGTTGTTTTTTGGTATGAAGTACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTGGTAACTCATGATATATACTGTACTTTTAATTTTGAAACCCTTATGTTTACAAAGGATTTAAGTGAAAGGTTGAATTTTTATGTAGGGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTG</genome_strand>
        <mrna_strand>TGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG........................................................................................................................................................................TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG.....................................................................................GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713495" ref_strand="+" ref_description="SGN-E713495 [FB08DB11]">
      <seq>ccattcattaggacgagtattcgtacttgccttcaccctcacctttgcctggcctttatacttgatgttcaatatctcaggcaaaaaatatgaacgttttgcatgtcactatgatccaaatagcccaatctattctaaccgcgagagaatgcaaatctacatttcagatgcaggtgtgattgcagctacttatgtattataccgccttgctatgacacaagggctaacttgggttctgtgtatgtacggagtgcctctccttatcgtgaatggatttatagtgttgatcactcttatgcaccacactcatgcttcattgccacattatgattcatcggagtgggattatctaagaggagctttagctaccgtagatagagactatggtatactaaataaggtgttccataatgttactgatactcatgtcttgcatcatatattctcatacatatcacattaccatgcaatggaggcgaccaacgcgattaagccattgctaggagattattaccaagttgatgataccccaattttaaaggcaatgtggagggatacaaaggagtgcatctatgtagagaaggatgaaggatctcaaggtagaggtgtttattggtataaaaacaagctttgaaagtagaataccaagtaattggttaaatgttttaacctaataagaagatgcaagtattttgaataattatgtgtgtttttgttgtattttattgttaaatgttggttttagttgtcactaatgtattgttaaaataaaatatctacttatatgtaacaatcaatttggtatgaaatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9021" stop="7593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8721" g_stop="7956" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E713495" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8721" e_stop="7956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCACATTATGATTCATCGGAGTGGGATTATCTAAGAGGAGCTTTAGCTACCGTAGATAGAGACTATGGTATACTAAACAAGGTGTTCCATAATGTTACTGATACTCATGTCTTGCATCATATATTCTCATACATATCACATTACCATGCAATGGAGGCGACCAACGCGATTAAGCCATTGCTAGGAGATTATTACCAAGTTGATGATACCCCAATTTTAAAGGCAATGTGGAGGGATACAAAGGAGTGCATCTATGTAGAGAAGGACGAAGGATCTCAAGGAAGAGGTGTTTATTGGTATAAAAACAAGCTTTGAAAGTAGAATACCAAGTAATTGGTTAAATCTTTTAACCTAATAAGAAGATGCAAGTATTTTGAATAATTATGTGTGTTTTTGTTGTATTTTATTGTTAAATGTTGGTTTTAGTTGTTACTATTGTATTGTTAA</genome_strand>
        <mrna_strand>CCATTCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCACATTATGATTCATCGGAGTGGGATTATCTAAGAGGAGCTTTAGCTACCGTAGATAGAGACTATGGTATACTAAATAAGGTGTTCCATAATGTTACTGATACTCATGTCTTGCATCATATATTCTCATACATATCACATTACCATGCAATGGAGGCGACCAACGCGATTAAGCCATTGCTAGGAGATTATTACCAAGTTGATGATACCCCAATTTTAAAGGCAATGTGGAGGGATACAAAGGAGTGCATCTATGTAGAGAAGGATGAAGGATCTCAAGGTAGAGGTGTTTATTGGTATAAAAACAAGCTTTGAAAGTAGAATACCAAGTAATTGGTTAAATGTTTTAACCTAATAAGAAGATGCAAGTATTTTGAATAATTATGTGTGTTTTTGTTGTATTTTATTGTTAAATGTTGGTTTTAGTTGTCACTAATGTATTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705665" ref_strand="+" ref_description="SGN-E705665 [FA27DB11]">
      <seq>ctcatctctctttaacttatacaaaagaatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatccattaggacgagtattcgtacttgccttcaccctcacctttgcctggcctttatacttgatgttcaatatctcaggcaaaaaatatgaacgttttgcatgtcactatgatccaaatagcccaatctattctaaccgcgagagaatgcaaatctacatttcagatgcaggtgtgattgcagctacttatgtattataccgccttgctatgacacaagggctaacttgggttctgtgtatgtacggagtgcctctccttatcgtgaatggatttatagtgttgatcactcttatgcaccacactcatgcttcattgccacattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9556" stop="8093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9254" g_stop="8393" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="890" r_length="862" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E705665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9254" e_stop="8393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCACATTATG</genome_strand>
        <mrna_strand>ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCACATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701681" ref_strand="+" ref_description="SGN-E701681 [FA16CF04]">
      <seq>atctcatctctctttaacttatacaaaagaatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcccgcttattggatcgggcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatccattaggacgagtattcgtacttgccttcaccctcacctttgcctggcctttatacttgatgttcaatatctcaggcaaaaaatatgaacgttttgcatgtcactatgatccaaatagcccaatctattctaaccgcgagagaatgcaaatctacatttcagatgcaggtgtgattgcagctacttatgtattataccgccttgctatgacacaagggctaacttgggttctgtgtatgtacggagtgcctctccttatcgtgaatgaatttatagtgttgatcactcttatgcaacacactcatgcttcattggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9556" stop="8099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9254" g_stop="8399" g_length="856"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="886" r_length="856" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E701681" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9254" e_stop="8399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCAC</genome_strand>
        <mrna_strand>ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGGGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGAATTTATAGTGTTGATCACTCTTATGCAACACACTCATGCTTCATTGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205635" ref_strand="+" ref_description="SGN-E205635 [cLEC-21-B10]">
      <seq>catctccttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatccattaggacgagtattcgtacttgccttcaccctcacctttgcctggcctttatacttgatgttcaatatctcaggcaaaaaatatgaacgttttgcatgtcactatgatccaaatagcccaatctattctaaccgcgagagaatgcaaatctacatttcagatgcaggtgtgattgcagctacttatgtattataccgccttgctatgacacaagggctaacttgggttctgtgtatgtacggagtgcctctccttatcgtgaatggatttatagtgttgatcactcttatgcaccacactcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9317" stop="8109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9017" g_stop="8409" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E205635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9017" e_stop="8409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCT</genome_strand>
        <mrna_strand>CATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202578" ref_strand="+" ref_description="SGN-E202578 [cLEC-6-P16]">
      <seq>tgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatccattaggacgagtattcgtacttgccttcaccctcacctttgcctggcctttatacttgatgttcaatatctcaggcaaaaaatatgaacgttttgcatgtcactatgatccaaatagcccaatctattctaaccgcgagagaatgcaaatctacatttcagatgcaggtgtgattgcagctacttatgtattataccgccttgctatgacacaagggctaacttgggttctgtgtatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9257" stop="8176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8957" g_stop="8476" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E202578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8957" e_stop="8476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTA</genome_strand>
        <mrna_strand>TGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214267" ref_strand="+" ref_description="SGN-E214267 [cLEC-77-L17]">
      <seq>gaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatccattangacgagtattcgtacttgccttcaccctcacctttgcctggcctttatacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9432" stop="8358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9132" g_stop="8658" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E214267" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9132" e_stop="8658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTG</genome_strand>
        <mrna_strand>GAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTANGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296043" ref_strand="+" ref_description="SGN-E296043 [cLET-27-J23]">
      <seq>gaagaaggccattcctcctcactgcttccaacgttctcttattcgacccttctcttatcttattcaagatctcatacttggctccgtcttctattatattgccaacacttacttccatctacttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggacatcatggcttcagtgattaccaatgggtagatgacactggtggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgatgaagtgtacatacctagggttaaatccaaactgagatggggctacaaatactggaacaatccattacgacgagtattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9432" stop="8400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9132" g_stop="8700" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E296043" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9132" e_stop="8700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTC</genome_strand>
        <mrna_strand>GAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGACCCTTCTCTTATCTTATTCAAGATCTCATACTTGGCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTACTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGACATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGGTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGGTTAAATCCAAACTGAGATGGGGCTACAAATACTGGAACAATCCATTACGACGAGTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723564" ref_strand="+" ref_description="SGN-E723564 [FC20DE12]">
      <seq>gcggccaatcggccgaattagagttaagacatatcccttatctctctttaacttatacaaaagagtaaggctaaaagaattctcttttgatctttgctttttgctttgctttaatttagattaagcgcttatcattatatcaaaaaacattttaactttaacattttcttttcctaataatgaaatatttaagtttgatttgccatgcatggttgaattgtattctaacttctgtttaataatattaatttcatattactttttatattataactatcatagtaaaccaaaatccaaacttaattggtgcagatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcctgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggttcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatccatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9814" stop="8412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9489" g_stop="8712" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="855" r_length="762" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E723564" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9489" e_stop="8712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTCTTTTGATGTTGGCATTAATTTAGATTAGGCGCTTATCGATCATCCTATCAAAAACTATATATGAATCTTTTAACACTTTCTTATCCTAATAATGAAAATTTTATTTATGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTA</genome_strand>
        <mrna_strand>TTG-CT-TTTTGCT-TTG-CTTTAATTTAGATTAAGCGCTTATC-AT--T-ATATCAAAAA--ACATTTTAA-C-TTTAACATTTTCTTTTCCTAATAATG-AAA---TATTTAAGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCTGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGTTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206997" ref_strand="+" ref_description="SGN-E206997 [cLEC-33-D10]">
      <seq>tctcatctctctttaacttatacaaaagaatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgatgaagtgtacatacctaggtttaaatccaaactgagatggtactacaaatacttgaacaatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9556" stop="8415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9254" g_stop="8715" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="569" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E206997" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9254" e_stop="8715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCA</genome_strand>
        <mrna_strand>ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206117" ref_strand="+" ref_description="SGN-E206117 [cLEC-29-D7]">
      <seq>tctctctttaacttatacaaaagaatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggtcatcatggcttcagtgattaccaatgggtagatgacactgttggtctcatcctacattctgcacttttaacaccatactttgcatggaagcatagtcatcggcgtcatcatgccaacactggctcccttgagaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9556" stop="8478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9254" g_stop="8778" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="501" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E206117" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9254" e_stop="8778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGAT</genome_strand>
        <mrna_strand>ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200818" ref_strand="+" ref_description="SGN-E200818 [cLEC-9-N13]">
      <seq>tcatctctctttaacttatacaaaagaatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9556" stop="8616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9254" g_stop="8916" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="366" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E200818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9254" e_stop="8916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGT</genome_strand>
        <mrna_strand>ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205622" ref_strand="+" ref_description="SGN-E205622 [cLEC-21-L5]">
      <seq>taaaaggcatctcatctctttttcttaaacaaaattaaagagtaaggctaaaagaattgtctcttttgatgttggcattaatttagattaggcgcttatcgatcatcctatcaaaaactatatatgaatcttttaacactttcttatcctaataatgaaaattttatttatgtttgatttgccatgcatggttgaattgtattctaacttctgtttaataatattaatttcatattactttttatattataactatcatagtaaaccaaaatccaaacttaattggtgcagatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9845" stop="8829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9545" g_stop="9129" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E205622" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9545" e_stop="9129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGGCATCTCATCTCTTTTTCTTAAACAAAATTAAAGAGTAAGGCTAAAAGAATTGTCTCTTTTGATGTTGGCATTAATTTAGATTAGGCGCTTATCGATCATCCTATCAAAAACTATATATGAATCTTTTAACACTTTCTTATCCTAATAATGAAAATTTTATTTATGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAG</genome_strand>
        <mrna_strand>TAAAAGGCATCTCATCTCTTTTTCTTAAACAAAATTAAAGAGTAAGGCTAAAAGAATTGTCTCTTTTGATGTTGGCATTAATTTAGATTAGGCGCTTATCGATCATCCTATCAAAAACTATATATGAATCTTTTAACACTTTCTTATCCTAATAATGAAAATTTTATTTATGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272498" ref_strand="+" ref_description="SGN-E272498 [cLEM-19-N18]">
      <seq>ttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaaatagtgaagactgagaaatgtggcactgggattgtggcagatgaagatatcaagacaaaagagtttgttgtagagtatgttggagaagttattgatgacaagacatgtgaagagcgactttggaaattgaagcacagtggggaaacaaatttttacttgtgtgagatcaatagggatatggtgattgatgccacttataagggaaacaaatccagatacattaatcatagctgttgtccaaatactgagatgcagagatggatgattgatggtgagaatagaattggcatatttgcaacgcgtgacattaaaaggggcgagcatctgacctacgattatcagtttgttcaatttggtgcagatcaagattgtcactgtggtgctataaattgcaagcgaaagctgggaatcagacctaacaaactaaaacttccttcttcagatgctgctgcactaaagctagtggcatgccaagtagctgcgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="28774" stop="25035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28474" g_stop="28420" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28419" i_stop="26122" i_length="2298">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26121" g_stop="26043" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="134" r_length="79" r_score="0.873"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26042" i_stop="25947" i_length="96">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.468" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25946" g_stop="25775" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="306" r_length="172" r_score="0.913"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25774" i_stop="25667" i_length="108">
            <donor d_prob="0.882" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25666" g_stop="25586" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="387" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25585" i_stop="25457" i_length="129">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.305" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25456" g_stop="25349" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="495" r_length="108" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E272498" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28474" e_stop="28420"/>
          <exon e_start="26121" e_stop="26043"/>
          <exon e_start="25946" e_stop="25775"/>
          <exon e_start="25666" e_stop="25586"/>
          <exon e_start="25456" e_stop="25349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAGGTAGACACTTAAAGAACTTCGAGCTGCTTCAGATAGTTGAACAAATATCCCCTGATGGATGCATTTTAACTACTTGATTGTTTTTAACTACTTCTCATTGAGATGACTGTTTGTGATGCCTTGTGGTGACTTTTGTAATTCTGAATTGTTCTATTTTGCAGTACCTCATTGGTACTCGCTTCAATAAATTTTACTTAAATTACCCAAATAAAATTGTTTTAAACTTCTTTGGAACCTTTGATATTTATCTTTCTCAAAAGAAGAACCTTTGTTGGACTAGAAAGTTGACCATTGACCTTGAGCTGTGATTTTGCCATAGCATAGACTTTCACTTCCTTGTATTTCTCAATTGAATTATACTTTTTTATGTGATTACTACCAACACATATGATAATTGTCCGATGTGGGTTATTGTTGATTATAGTGTGTCAGACTCAATATATATTTGTAAATTTCACACTGGCTGAGAATTTCTATAGCTGGCAAATAGAATGGAATAAGGTAAAATGGTTATAACTTTGGGAGGAAATCCATACTCATTGCGAAATGTTTCTTTGAATATCTTTTTTTACAATGATGTATCTTTTAATGTCTAAATGACTGGTTTTAGTATATGTTTTGTTTAGTATCTAAATTGTTTGATTTATAACCGGAAAATAATGTGTTCACAATTATTTAGTATTGATTAATATTGAAGTATATTACCACACATATCTAATGCATGATTCTAGTTTTAAGTTTTGAATAAGAATGTCAATTTCACATGTATTCAGAAAGTTTAGAACATTATGAACAGAACATGAAAACCTAGGACAAGAAATGCATAAACCATACGAATGAAGAAGATGAAGTGCAATAACAAAACTTGCACTTTTTCTTCGCTGAAACAATACCGTTAGGAGGAGGTCTTTATTTAACACACATTCGGAGCTTTTTGAATCTGGGAAAAAATACGTAGTTTTGATTTGAGATCGAACGAACCGTCCAAAGACAAATACCAAAATTGCAATTAACTTTAACAAAAGTATTCTAGACTTGCAAGTACACCCAACAATTATGGAGGATTTTATCAGCCTCAAAAGGCATTTTCTGGATCATGCCTAGGAAAGTGACTGAGGCCTTAATGAGCTGGGAGGAAGAGGGGGTCCCTGCAAAAGACAGAAGTAGATGGAGAATTATCCCTAGTGCTATATGGTGGGTTATCTGGAAAGAGAGGAATTCAACATGTGTTGAGAGCATACTGAACAATGTGCAGAAAGTTAAACTTAACTACTACTTTTTTAGTTTTTTGGTGTAATCAGTTATACTCAAATGAAACTATTTCTTATTATTGATGTTCTAGACTCAATTTGATCATAGAGCAGAGAAAATTGGAGTACACTTGTATTTAAGGTTTCAATACAACCCATTTGTTGTTTTGTGGTATAATACAAAGTTACCAAGTTAAAAAAAAAATATTTTGGACTTGGATAAATTTTCATCCTAGTGAATAGTCTCTTTCTATTCCTTTCTTGACAGTTGTTTCACCAAGTAAAGAAGCTCTTGAGTTCCCCATTTCAATTTTCATCAAAGTGTTGTCTAGAAATTCTTAAAGATAGAATGAATAGAAGTTTCACCAATTTTCTAGCACTTTGTACTCTTCATTTTCTGCATCTATTGGATGCCATCAATGAAATCAATTACTTTCATGAAAAACAAGAGAAAATGAAGGAAGTTCTATCAATGTTCTTGTTTGTGGTTTATTTCTTTAAGGGTTGCTGAATTATCCATGTGACGGTTGCAATTCCCTTATTCCTTCATTTTGGTTTACTTCTGCTTAAGTTTGTCTACTGCCAATTTTATTACCAGGAAAATACTGCCTAAAATTAGTCACCTAGAGAATTATGACTTTCCTTGTCATCAAGATAGAGACACTCATCCTACATCTGTTTTTGACCTAAACAGTGAATACCATTCTAACTTGGTCTCATTAACTTTTAGACCCTGAGCATGAGTGAAAAAATCAATGTTAAACACTGCATAGATGAACCTGATGTCTGATTATTTGTAGAGAATATCTGTAGAGCAGTCTTAGAGTTGTTACATTAAGAAAAAGGACGTCCAGAGGGGAGTGATTGTTTAATCTGTTTATTGTGTCATTTTGTGTCTCTCATGTATTTTGAAAGAAATTAGAAGAGGTTACATTATCACCTTTATTTCTTTGCTTTCTTTTAAAAAGTGTACAACGATCATATTCTTCCTCAAACTTTTGGTCATTATATACATGGTTGGTCAAGTTTGTTGACATGTAACATGCAGACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAACGAGGAGACTTTGTTATAGAGTATGTTGGAGAAGGTGAGTTATTTCACTTTTTGATTATATTTTGAGGAATAATTTATGTTTTGTGCATTCTGAACTTCATTTAGCAAGGAAATATGCTTACCACTGCAGTTATTGATGACAAAACATGTGAAGAGAGGCTTTGGAAAATGAAGCATAGTGGAGAAACAAACTTCTACTTGTGTGAAATCAATCGGGATATGGTGATTGATGCCACTTACAAGGGCAACAAATCCCGATACATTAATCATAGTTGTTGTCCAAATACTGAGATGCAGAAATGGTATAGAAATAGCTAAATAATTAATCGTACTTCTATATTCTCAACCTCCATTCCCAGAGATTCAACTCTATATTACATTTCATTTCCATGTCCGCCTTTTTCTTTTAGGATGATTGATGGTGAAACAAGAATTGGCATATTTGCAACACGAGACATTAAAAGGGGCGAGCATCTGACCTATGATTACCAGTATGAAGCTGCTCTTTAATTTTACTTATTTCTTTTCCACCTGTAAGGTGTGCAGTGTGTTATTCTTCTGAGAGATTAAATAAACCTTCTTGGAATGTACATTGCATTTGAATCTAACAAGTGTAGCAGGTTTGTTCAGTTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGTAAGATGTAGGCGAAAGCTGGGCGTTAAACCTAACAAACCAAAACTCCCTGCTTCAGATACCGC</genome_strand>
        <mrna_strand>TTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAAATAGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAAATGTGGCACTGGGATTGTGGCAGATGAAGATATCAAGACAAAAGAGTTTGTTGTAGAGTATGTTGGAGAAG................................................................................................TTATTGATGACAAGACATGTGAAGAGCGACTTTGGAAATTGAAGCACAGTGGGGAAACAAATTTTTACTTGTGTGAGATCAATAGGGATATGGTGATTGATGCCACTTATAAGGGAAACAAATCCAGATACATTAATCATAGCTGTTGTCCAAATACTGAGATGCAGAGATG............................................................................................................GATGATTGATGGTGAGAATAGAATTGGCATATTTGCAACGCGTGACATTAAAAGGGGCGAGCATCTGACCTACGATTATCA.................................................................................................................................GTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTATAAATTGCAAGCGAAAGCTGGGAATCAGACCTAACAAACTAAAACTTCCTTCTTCAGATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268979" ref_strand="+" ref_description="SGN-E268979 [cLEI-16-A20]">
      <seq>aagaaggtaaagcgacgtctggaagatgatggtatattttgttcctgcagctgaacggcagaaacttctgttgtgtgtggcaaggattgtctctgtggcataatgttgtctagctgctcctcgggttgtaaatgtgggagttcttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaattagtgaagactgaaaaatgtggctctggaattgtggcagatgaagatatcaaacgaggagactttgttatagagtatgttggagaagttattgatgacaaaacatgtgaagagaggctttggaaaatgaagcatagtggagaaacaaacttctacttgtgtgaaatcaatcgggatatggtgattgatgccacttacaagggcaacaaatcccgatacattaatcatagttgttgtccaaatactgagatgcagaaatggatgattgatggtgaaacaagaattggcatatttgcaacacgagacattaaaaggggcgagcatctgacctatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="31181" stop="25289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30881" g_stop="30784" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30783" i_stop="28520" i_length="2264">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28519" g_stop="28420" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="198" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28419" i_stop="26122" i_length="2298">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26121" g_stop="26043" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="277" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26042" i_stop="25947" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.468" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25946" g_stop="25775" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="449" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25774" i_stop="25667" i_length="108">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25666" g_stop="25589" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="527" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E268979" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30881" e_stop="30784"/>
          <exon e_start="28519" e_stop="28420"/>
          <exon e_start="26121" e_stop="26043"/>
          <exon e_start="25946" e_stop="25775"/>
          <exon e_start="25666" e_stop="25589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGGGTGAGGATGATTTTGATTAAGTTCCGTTGGCTGTCAGTAAACTGGAGAAGTGTTACATACATTTGTGGAAATATCAGCTCTATACATTAATTATTCTGGATGGTTCTTTAGCTGATAGCTTCCTGCTGTTACGTGCATTCCCTTTTCCGTTAAAGTCTTGTGTGAATATATTATATATAGCATGTTTTAGGTTCTTAGGCGTTTATACTTTTAATATAAATCCCAGTGACATTTTTGCTTATATTCTTGTGTTAGTCTTCTAGTCGTTCATTAGCTCCATGGTGTAATTTCTAGCTGCAGACCTAGAGGAGGCAACATAAAAGGTTTAGGTTTTGTGGATAAGATGAGGGAAGTGAGACTGAGAAGGTTTGGGCATTCGAAGAGGAAGTGCACAGAGGCCCAGTGAGGAGGTGTGAAAGGTTGGCCAGAGTGGGTTTTAGGAGAGGTAGAGGTAGGCCAAAGACGTATTTGGGAGAGGTGATTAAACAAGACATGGTTCAACTCTATCTTTCCGAGGACATGATCTTAGAGTTGTGGAGGTCGTTAATTAGGGTAGAAGGTGATTAGATAGTTGAGCATTGTCTCATTTCCTAGCCGGATAGGTTGGTGCATTGTATCTAACCCAAATAAAAACATAATCAAGACTATATATAAAAACTATAAACACCCTAGCTTTTTGTATTCTTAATTTCATACACATGCATTTGACATATTCTAATGCTTTAGTGATTCATGACCTTTAAATACTCTTAATCAATTTAAAATGTGTAAAAATAAATATAACGAAAAGAGAAAGGTTTGTTTCAATATATTCTTTATATACATAAATTAATTCACTTTATATATATAAGAAAAATAATTTTGTTCCTATCGAAAATAATATTTCTACCTCTCAAGATAAGAATAAGATTTGCATACACGATTTTTCTCAGATTCTACTTATGAAATTATACTTGCTATGTTATTACTGAATTTCACAACAACTTCATTTATATGTTTGTCTATTGATCTTAGCCACTAATATATCTTCTTCATTTGATTTGTTATTATAAGTCAAATTAATGGACATTGGGGTCTACAATTAGGAAGAAGAACTGTAGTATTTATTACGTGGAATGTTCTTTTCCATGCAACTAGCTAGACTTATGCGTGTATAAAGAAGGATTGAAGTTATATACGCTTAACATACAAAATCTTTTTGCAGTGTAGTTTAGCTTATTATAACATGTCCCTTTTTGTATTATCATGTTATTACTTAATATTTGTCATAAAACTTTACTTGTAATTACTTAACAAATTACGTATTATTAATGCATAAGACTTGAACTCGTAAATAACGATTAAACCTTAGTTTTCTTTCCCCTCTAGGTTCACACATGCACTGACTTGAGATGCATGTTGTACTAGAAATATAAAATTCCACACCATACAAAAGTACTAATTGTCAAAAGGGATCAAAAGGCCATGGATGAGTTGACAATCATACTACTACAAGTCTTCTAATGCTTTAACTAGATGGAGTAGGAACTCTAACTAGAAAATTTTAAAAAAGATAAATGGAAGTGTAGTAATCGAGATTCAAACTTATAATCTAAAGCAACTTTCGAAGTATCTTCATTCATACACAAAGAGTTCCTCTTGTATTAGGCGATTCAACTAACCTTGTATATTGGTAGGAGATGTGACACATCTCGTAGACCAAAATTCTTCTTTCGAGTTTCTTAGATTTGTGCCCTGTCCCATTGAAACTCTTTTAGTTTTGGATAGTGTTCTAATTTGTGTCACTTCTAGTCTTGCTACTATTTCTATTTTATGAACATCATGTATTATATGATCATATGTTATGTTTGGCATGAAAAAATGTATATATGAACAATTTCTTATCAGTTAAATCGAAAATTTAACTGCTAAACACCAAACACGGATTTACTGAAAATCGACAATAAATATCTTATTGGTTTGGTTACCGGTTTAGCCTGTTCACAAACTGAAAATTGATAAACCGAACCGACCGAAGCACACCCCTACATGTGACTAGTCTAGGCATTCATTTTCTTACATTTTAGATCGTTATGGTTTTATTTATTTTTTGGTTACTCTTATATTGTTCTAGATCTCTTTGGCAGTTCTTTTAGACGTGTTATATATATTTGCTTGATAAAAGGATAATCAGCTTAAAGATTTTATTTCAGCATTTTATTTGGGAAATTTGATACAGCTTTAGAGAAGTGTGTAATTTGTTTGACTTTTCGTAAATTTTACAGCATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAGGTAGACACTTAAAGAACTTCGAGCTGCTTCAGATAGTTGAACAAATATCCCCTGATGGATGCATTTTAACTACTTGATTGTTTTTAACTACTTCTCATTGAGATGACTGTTTGTGATGCCTTGTGGTGACTTTTGTAATTCTGAATTGTTCTATTTTGCAGTACCTCATTGGTACTCGCTTCAATAAATTTTACTTAAATTACCCAAATAAAATTGTTTTAAACTTCTTTGGAACCTTTGATATTTATCTTTCTCAAAAGAAGAACCTTTGTTGGACTAGAAAGTTGACCATTGACCTTGAGCTGTGATTTTGCCATAGCATAGACTTTCACTTCCTTGTATTTCTCAATTGAATTATACTTTTTTATGTGATTACTACCAACACATATGATAATTGTCCGATGTGGGTTATTGTTGATTATAGTGTGTCAGACTCAATATATATTTGTAAATTTCACACTGGCTGAGAATTTCTATAGCTGGCAAATAGAATGGAATAAGGTAAAATGGTTATAACTTTGGGAGGAAATCCATACTCATTGCGAAATGTTTCTTTGAATATCTTTTTTTACAATGATGTATCTTTTAATGTCTAAATGACTGGTTTTAGTATATGTTTTGTTTAGTATCTAAATTGTTTGATTTATAACCGGAAAATAATGTGTTCACAATTATTTAGTATTGATTAATATTGAAGTATATTACCACACATATCTAATGCATGATTCTAGTTTTAAGTTTTGAATAAGAATGTCAATTTCACATGTATTCAGAAAGTTTAGAACATTATGAACAGAACATGAAAACCTAGGACAAGAAATGCATAAACCATACGAATGAAGAAGATGAAGTGCAATAACAAAACTTGCACTTTTTCTTCGCTGAAACAATACCGTTAGGAGGAGGTCTTTATTTAACACACATTCGGAGCTTTTTGAATCTGGGAAAAAATACGTAGTTTTGATTTGAGATCGAACGAACCGTCCAAAGACAAATACCAAAATTGCAATTAACTTTAACAAAAGTATTCTAGACTTGCAAGTACACCCAACAATTATGGAGGATTTTATCAGCCTCAAAAGGCATTTTCTGGATCATGCCTAGGAAAGTGACTGAGGCCTTAATGAGCTGGGAGGAAGAGGGGGTCCCTGCAAAAGACAGAAGTAGATGGAGAATTATCCCTAGTGCTATATGGTGGGTTATCTGGAAAGAGAGGAATTCAACATGTGTTGAGAGCATACTGAACAATGTGCAGAAAGTTAAACTTAACTACTACTTTTTTAGTTTTTTGGTGTAATCAGTTATACTCAAATGAAACTATTTCTTATTATTGATGTTCTAGACTCAATTTGATCATAGAGCAGAGAAAATTGGAGTACACTTGTATTTAAGGTTTCAATACAACCCATTTGTTGTTTTGTGGTATAATACAAAGTTACCAAGTTAAAAAAAAAATATTTTGGACTTGGATAAATTTTCATCCTAGTGAATAGTCTCTTTCTATTCCTTTCTTGACAGTTGTTTCACCAAGTAAAGAAGCTCTTGAGTTCCCCATTTCAATTTTCATCAAAGTGTTGTCTAGAAATTCTTAAAGATAGAATGAATAGAAGTTTCACCAATTTTCTAGCACTTTGTACTCTTCATTTTCTGCATCTATTGGATGCCATCAATGAAATCAATTACTTTCATGAAAAACAAGAGAAAATGAAGGAAGTTCTATCAATGTTCTTGTTTGTGGTTTATTTCTTTAAGGGTTGCTGAATTATCCATGTGACGGTTGCAATTCCCTTATTCCTTCATTTTGGTTTACTTCTGCTTAAGTTTGTCTACTGCCAATTTTATTACCAGGAAAATACTGCCTAAAATTAGTCACCTAGAGAATTATGACTTTCCTTGTCATCAAGATAGAGACACTCATCCTACATCTGTTTTTGACCTAAACAGTGAATACCATTCTAACTTGGTCTCATTAACTTTTAGACCCTGAGCATGAGTGAAAAAATCAATGTTAAACACTGCATAGATGAACCTGATGTCTGATTATTTGTAGAGAATATCTGTAGAGCAGTCTTAGAGTTGTTACATTAAGAAAAAGGACGTCCAGAGGGGAGTGATTGTTTAATCTGTTTATTGTGTCATTTTGTGTCTCTCATGTATTTTGAAAGAAATTAGAAGAGGTTACATTATCACCTTTATTTCTTTGCTTTCTTTTAAAAAGTGTACAACGATCATATTCTTCCTCAAACTTTTGGTCATTATATACATGGTTGGTCAAGTTTGTTGACATGTAACATGCAGACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAACGAGGAGACTTTGTTATAGAGTATGTTGGAGAAGGTGAGTTATTTCACTTTTTGATTATATTTTGAGGAATAATTTATGTTTTGTGCATTCTGAACTTCATTTAGCAAGGAAATATGCTTACCACTGCAGTTATTGATGACAAAACATGTGAAGAGAGGCTTTGGAAAATGAAGCATAGTGGAGAAACAAACTTCTACTTGTGTGAAATCAATCGGGATATGGTGATTGATGCCACTTACAAGGGCAACAAATCCCGATACATTAATCATAGTTGTTGTCCAAATACTGAGATGCAGAAATGGTATAGAAATAGCTAAATAATTAATCGTACTTCTATATTCTCAACCTCCATTCCCAGAGATTCAACTCTATATTACATTTCATTTCCATGTCCGCCTTTTTCTTTTAGGATGATTGATGGTGAAACAAGAATTGGCATATTTGCAACACGAGACATTAAAAGGGGCGAGCATCTGACCTATGATTA</genome_strand>
        <mrna_strand>AAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTGAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAACGAGGAGACTTTGTTATAGAGTATGTTGGAGAAG................................................................................................TTATTGATGACAAAACATGTGAAGAGAGGCTTTGGAAAATGAAGCATAGTGGAGAAACAAACTTCTACTTGTGTGAAATCAATCGGGATATGGTGATTGATGCCACTTACAAGGGCAACAAATCCCGATACATTAATCATAGTTGTTGTCCAAATACTGAGATGCAGAAATG............................................................................................................GATGATTGATGGTGAAACAAGAATTGGCATATTTGCAACACGAGACATTAAAAGGGGCGAGCATCTGACCTATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331825" ref_strand="+" ref_description="SGN-E331825 [cTOD-7-M22]">
      <seq>gggaaccggtcaaggttgaaatttaactgggatgagcaataacaggctaagtggtcattagctcagatcagcttttcaggttatagtcaatcagtgttatatccagtgccagtcaaggtgatgcctgctatgaagactgctattcatggtgggattgggcacgtattcagcaaactaataaaggagattggtgatcctgttgactttgaacttccagattggttaaataaatggcagtcaatgccctatacctttattaagcgcaatatatacctcactaagaaggtaaagcgacgtctggaagatgatggtatattttgttcctgcagctcaacggcagaaacttctgttgtgtgtggcaaggattgtctctgtggcataatgttgtctagctgctcctcgggttgtaaatgtgggagttcttgtctgaataagccattccatcaacgtcctgtgaagaagatgaaattagtgaagactgaaaaatgtggctctggaattgtggcagatgaagatatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="33719" stop="25777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33418" g_stop="33348" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="79" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33347" i_stop="32997" i_length="351">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32996" g_stop="32941" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="135" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32940" i_stop="31285" i_length="1656">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31284" g_stop="31155" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="265" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31154" i_stop="30896" i_length="259">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30895" g_stop="30784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="377" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30783" i_stop="28520" i_length="2264">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28519" g_stop="28420" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="477" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28419" i_stop="26122" i_length="2298">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26121" g_stop="26077" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="522" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E331825" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33418" e_stop="33348"/>
          <exon e_start="32996" e_stop="32941"/>
          <exon e_start="31284" e_stop="31155"/>
          <exon e_start="30895" e_stop="30784"/>
          <exon e_start="28519" e_stop="28420"/>
          <exon e_start="26121" e_stop="26077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGGTTGAAATTTAACTGGGATGAGCAATAACAGGCTAAATGGTCATTAGCTCAGATCAGCTTTTCAGGTACACTCAAGAAATACTATGAATATAGATGAAGTGGTGGATAACGTATGGCGGAGAAAACTGAAGAGTCGAAATTCTATACTTGTCTTAAGATTATCCATTAAATGAGAGTAGCATGTGAAAGGAAGTGGTAATTTTGTGGTTGCATTATCAGAAACTTCATTGTCCCAGCAATGGCATAAATAAAACTGCTGAAGTCCTTAATTTATGCATTTTATTTTCATGAACTTCTTTTTAGTCTGCAATTTTATACTGATTGATGTGGTATTTTGTAAATCTTAATCTGCAATTTTCTACTTTGTATATCAGCTTCTCTGCACATCAATTGATTCCTTGTTTTACCATTATTAGGTTATAGTCAATCAGTGTTATATCCAGTGCCAGTCAAGGTGATGCCTGCTATGAAGGTTCAGATACTAACTTTTTCTGGTTCATACTCTTTGTCTGCATGTTGTCTATATCAATTTAACTTACAGAGATATTATGTCGAGTGATATCATATGCTGTGCTATATACTTATAATAATTATATTATGTGCTATACAAGTTACATTTTTTGTTCTACATATTTGAATCTCAATAATTTCTGCTCCCTCTTGGTATTTTTGTAATCAATGAAGCAACATAACTAGACCTCTAAAGGAGAAGATTTGGTGCGAGGCATTTGGTAAAGTCAGGACGTTTTGATATACTGCAAATTAAATAGTAAATTGACAGCTGCTGTAGTGACTCCAGTAAAGCCAAAAGACTAGCTAGCAGCTAGCCAGTGGCTTGAATTCAAGTCTGAGTTCAGTTCCTATCGAGGATAAAAGTGGGAATATTTATTTTGGAAGCATTAGTTTCTTCATTACCGCGGTGGGGACGAGTTCGCTTTTTCTACTTTCCATGGGTTAGGGGTGGGTGGTGTTTGCAGGTTTCGATTGGAACTCCAATTTGTCAAAATGCATTTTTCACAGCTTTAAATCATAAAATGCCCACTCCCTTGGACATGGTGATGTCCACTTAAATAATAGAATTGGGCATCCGAGTGTTGAAGACCAGAAAGAGTCAAATACGAGCATTCCTAGTGGACAATCGAGGAAACAAAACTTTCCTCCGAAGCTAATTAGGGATTCCTTTTTTCCCGGTTAATAATTAGGGGTTCCATTGCAATATATTTTCCTTGTAGTTCTACTCCAATTCAAGAAGTCTGAAACTTTTTCAAGTTGGTGATTCAGTAGCTTTTAGAACATATAATTTCTTATTCTGCTGGCTGGTTTGTCTGATTTAGGCATTTGCTTTTGTCTCCACATTCGTCCTTCATGTTTGCGAAATGTGAAGAAGAGAGTTTAATGATTTTTAATCCTGTTCGATTTAAATATATAGGAAATTGAGATACTCTTTTATGTTATTTGCATGACTAGCTAATATAGGCGAACATAGTGGATATGTAATCCTTGATTTCAATCCATCCACTACACACTTCCAGTCCTATGTGATGGTTCCATTTTCCTTTTTCCTATTTATTTTAGTGAAAGATCCTTGCATTTTATGTTGGCCTGAGATGCACCCAAGGGGGTGTGTGGCTTAGTGGTTAATGAAGTGGTTGAAAAACCATGAGATCTTGGGTTAAAATCCTAGTGGATGCAAAAAACATGGGGCAATTTCTTTCCATTTGGTTATGTGGCACGTGCCTTGGGCCATGTCCTTATGCTGATTGTGAAATTTTTTTGCCCGTAGTGCCGACAATGTTTGTTGGAACATTTTTTGAGTTAAATTTTGTAGTAGTTTTTATTTGATTATTATATTTGTAATTATTTTGATAATATATTGTAGCTAGAAAGATCCACTTAATGTAATTACAAAGCCCATTCCTTTTGTTTTTTTGGATGTTGGATTGTATTTAAGAAAAAATGGTTCTCTATGATTTAGTTCTTGAGCTTCTTTTACTTATTGACATATATAAAAAGTTGGGAATGCCATTGCTGATTCCGATCGTCTCAATCAATTGATTGGGAAGAGATTACTTTAGAATGCAAAAAAATATATCATCTTGTTAATATGCCTTTTTCTTTCCGTGGCCAGACTGCTATTCATGGTGGGATTGGGCACGTATTCAGCAAACTAATAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCAGTATCCTTTCATTTGATGGTCTTGATATTTGTGACCTATGATATTCTTCACCTATCTATTAGATGTTCTTTCATATTGTGATAGTTTACATCTTACACGTACACTGTTCACTTCTGCATCTCTTGGATAAGATCTTTGTGCTTCATCTCATTTCCTTTTTCATTAAGGTTTTCTGTCTGACCTTCATAGTCCTTTATCTTTGTGATCTTTCTTTGTATCCTCTTTTTTTTCCTCTTCTGTTGGTATTAACTACTTGAAGATATATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGGGTGAGGATGATTTTGATTAAGTTCCGTTGGCTGTCAGTAAACTGGAGAAGTGTTACATACATTTGTGGAAATATCAGCTCTATACATTAATTATTCTGGATGGTTCTTTAGCTGATAGCTTCCTGCTGTTACGTGCATTCCCTTTTCCGTTAAAGTCTTGTGTGAATATATTATATATAGCATGTTTTAGGTTCTTAGGCGTTTATACTTTTAATATAAATCCCAGTGACATTTTTGCTTATATTCTTGTGTTAGTCTTCTAGTCGTTCATTAGCTCCATGGTGTAATTTCTAGCTGCAGACCTAGAGGAGGCAACATAAAAGGTTTAGGTTTTGTGGATAAGATGAGGGAAGTGAGACTGAGAAGGTTTGGGCATTCGAAGAGGAAGTGCACAGAGGCCCAGTGAGGAGGTGTGAAAGGTTGGCCAGAGTGGGTTTTAGGAGAGGTAGAGGTAGGCCAAAGACGTATTTGGGAGAGGTGATTAAACAAGACATGGTTCAACTCTATCTTTCCGAGGACATGATCTTAGAGTTGTGGAGGTCGTTAATTAGGGTAGAAGGTGATTAGATAGTTGAGCATTGTCTCATTTCCTAGCCGGATAGGTTGGTGCATTGTATCTAACCCAAATAAAAACATAATCAAGACTATATATAAAAACTATAAACACCCTAGCTTTTTGTATTCTTAATTTCATACACATGCATTTGACATATTCTAATGCTTTAGTGATTCATGACCTTTAAATACTCTTAATCAATTTAAAATGTGTAAAAATAAATATAACGAAAAGAGAAAGGTTTGTTTCAATATATTCTTTATATACATAAATTAATTCACTTTATATATATAAGAAAAATAATTTTGTTCCTATCGAAAATAATATTTCTACCTCTCAAGATAAGAATAAGATTTGCATACACGATTTTTCTCAGATTCTACTTATGAAATTATACTTGCTATGTTATTACTGAATTTCACAACAACTTCATTTATATGTTTGTCTATTGATCTTAGCCACTAATATATCTTCTTCATTTGATTTGTTATTATAAGTCAAATTAATGGACATTGGGGTCTACAATTAGGAAGAAGAACTGTAGTATTTATTACGTGGAATGTTCTTTTCCATGCAACTAGCTAGACTTATGCGTGTATAAAGAAGGATTGAAGTTATATACGCTTAACATACAAAATCTTTTTGCAGTGTAGTTTAGCTTATTATAACATGTCCCTTTTTGTATTATCATGTTATTACTTAATATTTGTCATAAAACTTTACTTGTAATTACTTAACAAATTACGTATTATTAATGCATAAGACTTGAACTCGTAAATAACGATTAAACCTTAGTTTTCTTTCCCCTCTAGGTTCACACATGCACTGACTTGAGATGCATGTTGTACTAGAAATATAAAATTCCACACCATACAAAAGTACTAATTGTCAAAAGGGATCAAAAGGCCATGGATGAGTTGACAATCATACTACTACAAGTCTTCTAATGCTTTAACTAGATGGAGTAGGAACTCTAACTAGAAAATTTTAAAAAAGATAAATGGAAGTGTAGTAATCGAGATTCAAACTTATAATCTAAAGCAACTTTCGAAGTATCTTCATTCATACACAAAGAGTTCCTCTTGTATTAGGCGATTCAACTAACCTTGTATATTGGTAGGAGATGTGACACATCTCGTAGACCAAAATTCTTCTTTCGAGTTTCTTAGATTTGTGCCCTGTCCCATTGAAACTCTTTTAGTTTTGGATAGTGTTCTAATTTGTGTCACTTCTAGTCTTGCTACTATTTCTATTTTATGAACATCATGTATTATATGATCATATGTTATGTTTGGCATGAAAAAATGTATATATGAACAATTTCTTATCAGTTAAATCGAAAATTTAACTGCTAAACACCAAACACGGATTTACTGAAAATCGACAATAAATATCTTATTGGTTTGGTTACCGGTTTAGCCTGTTCACAAACTGAAAATTGATAAACCGAACCGACCGAAGCACACCCCTACATGTGACTAGTCTAGGCATTCATTTTCTTACATTTTAGATCGTTATGGTTTTATTTATTTTTTGGTTACTCTTATATTGTTCTAGATCTCTTTGGCAGTTCTTTTAGACGTGTTATATATATTTGCTTGATAAAAGGATAATCAGCTTAAAGATTTTATTTCAGCATTTTATTTGGGAAATTTGATACAGCTTTAGAGAAGTGTGTAATTTGTTTGACTTTTCGTAAATTTTACAGCATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAGGTAGACACTTAAAGAACTTCGAGCTGCTTCAGATAGTTGAACAAATATCCCCTGATGGATGCATTTTAACTACTTGATTGTTTTTAACTACTTCTCATTGAGATGACTGTTTGTGATGCCTTGTGGTGACTTTTGTAATTCTGAATTGTTCTATTTTGCAGTACCTCATTGGTACTCGCTTCAATAAATTTTACTTAAATTACCCAAATAAAATTGTTTTAAACTTCTTTGGAACCTTTGATATTTATCTTTCTCAAAAGAAGAACCTTTGTTGGACTAGAAAGTTGACCATTGACCTTGAGCTGTGATTTTGCCATAGCATAGACTTTCACTTCCTTGTATTTCTCAATTGAATTATACTTTTTTATGTGATTACTACCAACACATATGATAATTGTCCGATGTGGGTTATTGTTGATTATAGTGTGTCAGACTCAATATATATTTGTAAATTTCACACTGGCTGAGAATTTCTATAGCTGGCAAATAGAATGGAATAAGGTAAAATGGTTATAACTTTGGGAGGAAATCCATACTCATTGCGAAATGTTTCTTTGAATATCTTTTTTTACAATGATGTATCTTTTAATGTCTAAATGACTGGTTTTAGTATATGTTTTGTTTAGTATCTAAATTGTTTGATTTATAACCGGAAAATAATGTGTTCACAATTATTTAGTATTGATTAATATTGAAGTATATTACCACACATATCTAATGCATGATTCTAGTTTTAAGTTTTGAATAAGAATGTCAATTTCACATGTATTCAGAAAGTTTAGAACATTATGAACAGAACATGAAAACCTAGGACAAGAAATGCATAAACCATACGAATGAAGAAGATGAAGTGCAATAACAAAACTTGCACTTTTTCTTCGCTGAAACAATACCGTTAGGAGGAGGTCTTTATTTAACACACATTCGGAGCTTTTTGAATCTGGGAAAAAATACGTAGTTTTGATTTGAGATCGAACGAACCGTCCAAAGACAAATACCAAAATTGCAATTAACTTTAACAAAAGTATTCTAGACTTGCAAGTACACCCAACAATTATGGAGGATTTTATCAGCCTCAAAAGGCATTTTCTGGATCATGCCTAGGAAAGTGACTGAGGCCTTAATGAGCTGGGAGGAAGAGGGGGTCCCTGCAAAAGACAGAAGTAGATGGAGAATTATCCCTAGTGCTATATGGTGGGTTATCTGGAAAGAGAGGAATTCAACATGTGTTGAGAGCATACTGAACAATGTGCAGAAAGTTAAACTTAACTACTACTTTTTTAGTTTTTTGGTGTAATCAGTTATACTCAAATGAAACTATTTCTTATTATTGATGTTCTAGACTCAATTTGATCATAGAGCAGAGAAAATTGGAGTACACTTGTATTTAAGGTTTCAATACAACCCATTTGTTGTTTTGTGGTATAATACAAAGTTACCAAGTTAAAAAAAAAATATTTTGGACTTGGATAAATTTTCATCCTAGTGAATAGTCTCTTTCTATTCCTTTCTTGACAGTTGTTTCACCAAGTAAAGAAGCTCTTGAGTTCCCCATTTCAATTTTCATCAAAGTGTTGTCTAGAAATTCTTAAAGATAGAATGAATAGAAGTTTCACCAATTTTCTAGCACTTTGTACTCTTCATTTTCTGCATCTATTGGATGCCATCAATGAAATCAATTACTTTCATGAAAAACAAGAGAAAATGAAGGAAGTTCTATCAATGTTCTTGTTTGTGGTTTATTTCTTTAAGGGTTGCTGAATTATCCATGTGACGGTTGCAATTCCCTTATTCCTTCATTTTGGTTTACTTCTGCTTAAGTTTGTCTACTGCCAATTTTATTACCAGGAAAATACTGCCTAAAATTAGTCACCTAGAGAATTATGACTTTCCTTGTCATCAAGATAGAGACACTCATCCTACATCTGTTTTTGACCTAAACAGTGAATACCATTCTAACTTGGTCTCATTAACTTTTAGACCCTGAGCATGAGTGAAAAAATCAATGTTAAACACTGCATAGATGAACCTGATGTCTGATTATTTGTAGAGAATATCTGTAGAGCAGTCTTAGAGTTGTTACATTAAGAAAAAGGACGTCCAGAGGGGAGTGATTGTTTAATCTGTTTATTGTGTCATTTTGTGTCTCTCATGTATTTTGAAAGAAATTAGAAGAGGTTACATTATCACCTTTATTTCTTTGCTTTCTTTTAAAAAGTGTACAACGATCATATTCTTCCTCAAACTTTTGGTCATTATATACATGGTTGGTCAAGTTTGTTGACATGTAACATGCAGACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAA</genome_strand>
        <mrna_strand>GTCAAGGTTGAAATTTAACTGGGATGAGCAATAACAGGCTAAGTGGTCATTAGCTCAGATCAGCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................GTTATAGTCAATCAGTGTTATATCCAGTGCCAGTCAAGGTGATGCCTGCTATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTATTCATGGTGGGATTGGGCACGTATTCAGCAAACTAATAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCA...................................................................................................................................................................................................................................................................ATATATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241592" ref_strand="+" ref_description="SGN-E241592 [cLED-36-I1]">
      <seq>aaagttaagggacctctgggggagatggccataacttatccacgagaagtaaagcttgagaaggaagatggaggtattctaagggtcagaaaagccatggagacaagacgcgctaatcagatgcatggtttattcaggactctaactgataacatggtagtcggcgtttccaaaggattcgagaagaaacttcaattggtaggggttggatatcgtgcaaccatcgaagggaaagacatagttctcaatctcggattttctcatcccgttaggatggaagatcctgctggactgcaagttaaggttgaagaaaacaccacaatcactgttagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggctagaagaagtaaatcatggtacattttgtcattgttttattgtatttttcttagagctattttgaaggtaggttcattatgcaagtgacttgacaaattttttatcttgtggatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="34763" stop="38280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35012" g_stop="35148" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35149" i_stop="37538" i_length="2390">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37539" g_stop="37980" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="579" r_length="442" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E241592" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35012" e_stop="35148"/>
          <exon e_start="37539" e_stop="37980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAGGTAGTCTGCAGTTTAATTGTGCTGTTTTCTCGACTTCTTTTCTCGGTTTTATTCTTAGATATGGTAAACATTCTAAGTTATAATTTACCTATTACTACTACGTATGATCAAGAAGCTATAATCTACTTACTGGAGTAATTACTTTGAAATTCACGACTGGTTTTGATGTGGACTAGTGATGACTTAGTTCTTCTGACATAAAATTTAAGATTTAAAGGGTCTAATTGATCTTCTCCAATTATATGATATCATATTTTATAACCAAATTGAGATGTTTCCCAGTCCTAGTCCTAATTGATTTTATCCTAGTTGTTAATGAAGAGGAAAGGATAATTTTTTCCTCTTAATAAGGTAAAGAAGGGCAGTCATTTCTTACCACCTTGAAGTTTTCTGTTCTTTTTAGTACTTCTAAGTTTCAAAAATAGTGAACCTCTTTGTGGTTCTAAACTTTACTTATTTGATCTTAACTATTGATATATATTACTTGCTGTAGCCTCTTGCCAATGGTTACCTAATAAATTGATATAATCGAATGCTTCTTTTGCTATGAGGGGACTCGAAAATATGGAAGAAAACGTGGACATTAGTCACTGTAAGTAGCAAAAGAAGTATGTTGCTCGGGAATCACCAAAAATGTTATTGCATTTGTGTTGGATCCTCAAAAGTTCACTACTTTTGGAGGGTCTGACCTGCACTCGGCAGCATTTTGAAGAGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAACGATCTTTTGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAATGATCTTTCTCACTATGAGAAGATTGACTGGCAACAAAGTTCAAATGTAGCAGATCCTTAGTTCCATGACAGAATTAATGATTCTAAGGTCATGAGAAGTGATAAATTAGGCAGAAGAGGGAATATAGACGTAAGAACAGCTAGGACTTCTAGCAAAGGACATATATCAGTGCTAGTCGTAGTGTTTCTAGGCTAAAAGGTATCACAATTAGGGGGTGGTGAGAAAGATCTATAATATCTGGATGCTAATAAGCCATTTGCAAGTCTCAAAAGCCACAAGTGCATATACTACACTTTGGTCAAGGGGAAAATGGAAAAAAATGGATACGGTTAAAGTTTTCAATGTAAACAACAGATTTGAAGAGGAAAACCCCAACTTTAAAAGAAGGAAGAGAAAGTAGAAATAATTAAAAAATCTATGTTTTTGAGTTTAGACACGCACTTCAATTGGTTCTTTCATATTAAAACTCCTTATACTCTCCAACGGCTAGTTAACGACTACTTTAACTTAGGGAAGATCATAACTAATCAGATAAAAACAAGGGAAACTTCCTTTTGAGACATACTCACAGTAGTGAGGTTGAGTAAAACTCTTAATCTTATTCATGTGTATCTGCTCTTTTGAAATTACGGCAAAATTCTAAAGCACTCTCGAATAACCAGGCAAGCCAGTTGTCTATTATGCATTAGCGCAAAACTGCAATAAACAATAGAAATTGTGGGAGTATAATGTGATGAATAAGAAACTTAGCTTACAACTAGAATTTTTAGTTCGTAAAAGTTATCAACTTTGCCAATTATTCTGTAAGTCAAATCTTAGCATCTGTATTTGGTTCGTAATCCAAAAGATACCAAATGGATCCATTATACTCAAAACCCAGCAAACTATCAAAATATGTTTTCTTTCTTCATTTTATAGATATTCTTTTTGAGATGTGCGTGGGATTGTTGGAAATTTGGAAGTATCTCATAAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCC</genome_strand>
        <mrna_strand>AAAGTTAAGGGACCTCTGGGGGAGATGGCCATAACTTATCCACGAGAAGTAAAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGATCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCACAATCACTGTTAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCTAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGGTAGGTTCATTATGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242435" ref_strand="+" ref_description="SGN-E242435 [cLED-30-N17]">
      <seq>aaagttaagggacctctgggggagatggccataacttatccacgagaagtaaagcttgagaaggaagatggaggtattctaagggtcagaaaagccatggagacaagacgcgctaatcagatgcatggtttattcaggactctaactgataacatggtagtcggcgtttccaaaggattcgagaagaaacttcaattggtaggggttggatatcgtgcaaccatcgaagggaaagacatagttctcaatctcggattttctcatcccgttaggatggaagttcctgctggactgcaagttaaggttgaagaaaacaccagaatcactgtaagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaaatcatggtacattctgtcattgttttattgcattcttcttagagctattttgaagttaggttcattttgcaagtgacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="34763" stop="38256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35012" g_stop="35148" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35149" i_stop="37538" i_length="2390">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37539" g_stop="37956" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="555" r_length="418" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E242435" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35012" e_stop="35148"/>
          <exon e_start="37539" e_stop="37956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAGGTAGTCTGCAGTTTAATTGTGCTGTTTTCTCGACTTCTTTTCTCGGTTTTATTCTTAGATATGGTAAACATTCTAAGTTATAATTTACCTATTACTACTACGTATGATCAAGAAGCTATAATCTACTTACTGGAGTAATTACTTTGAAATTCACGACTGGTTTTGATGTGGACTAGTGATGACTTAGTTCTTCTGACATAAAATTTAAGATTTAAAGGGTCTAATTGATCTTCTCCAATTATATGATATCATATTTTATAACCAAATTGAGATGTTTCCCAGTCCTAGTCCTAATTGATTTTATCCTAGTTGTTAATGAAGAGGAAAGGATAATTTTTTCCTCTTAATAAGGTAAAGAAGGGCAGTCATTTCTTACCACCTTGAAGTTTTCTGTTCTTTTTAGTACTTCTAAGTTTCAAAAATAGTGAACCTCTTTGTGGTTCTAAACTTTACTTATTTGATCTTAACTATTGATATATATTACTTGCTGTAGCCTCTTGCCAATGGTTACCTAATAAATTGATATAATCGAATGCTTCTTTTGCTATGAGGGGACTCGAAAATATGGAAGAAAACGTGGACATTAGTCACTGTAAGTAGCAAAAGAAGTATGTTGCTCGGGAATCACCAAAAATGTTATTGCATTTGTGTTGGATCCTCAAAAGTTCACTACTTTTGGAGGGTCTGACCTGCACTCGGCAGCATTTTGAAGAGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAACGATCTTTTGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAATGATCTTTCTCACTATGAGAAGATTGACTGGCAACAAAGTTCAAATGTAGCAGATCCTTAGTTCCATGACAGAATTAATGATTCTAAGGTCATGAGAAGTGATAAATTAGGCAGAAGAGGGAATATAGACGTAAGAACAGCTAGGACTTCTAGCAAAGGACATATATCAGTGCTAGTCGTAGTGTTTCTAGGCTAAAAGGTATCACAATTAGGGGGTGGTGAGAAAGATCTATAATATCTGGATGCTAATAAGCCATTTGCAAGTCTCAAAAGCCACAAGTGCATATACTACACTTTGGTCAAGGGGAAAATGGAAAAAAATGGATACGGTTAAAGTTTTCAATGTAAACAACAGATTTGAAGAGGAAAACCCCAACTTTAAAAGAAGGAAGAGAAAGTAGAAATAATTAAAAAATCTATGTTTTTGAGTTTAGACACGCACTTCAATTGGTTCTTTCATATTAAAACTCCTTATACTCTCCAACGGCTAGTTAACGACTACTTTAACTTAGGGAAGATCATAACTAATCAGATAAAAACAAGGGAAACTTCCTTTTGAGACATACTCACAGTAGTGAGGTTGAGTAAAACTCTTAATCTTATTCATGTGTATCTGCTCTTTTGAAATTACGGCAAAATTCTAAAGCACTCTCGAATAACCAGGCAAGCCAGTTGTCTATTATGCATTAGCGCAAAACTGCAATAAACAATAGAAATTGTGGGAGTATAATGTGATGAATAAGAAACTTAGCTTACAACTAGAATTTTTAGTTCGTAAAAGTTATCAACTTTGCCAATTATTCTGTAAGTCAAATCTTAGCATCTGTATTTGGTTCGTAATCCAAAAGATACCAAATGGATCCATTATACTCAAAACCCAGCAAACTATCAAAATATGTTTTCTTTCTTCATTTTATAGATATTCTTTTTGAGATGTGCGTGGGATTGTTGGAAATTTGGAAGTATCTCATAAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGA</genome_strand>
        <mrna_strand>AAAGTTAAGGGACCTCTGGGGGAGATGGCCATAACTTATCCACGAGAAGTAAAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTCTGTCATTGTTTTATTGCATTCTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239915" ref_strand="+" ref_description="SGN-E239915 [cLED-29-K17]">
      <seq>aaagttaagggacctctgggggagatggccataacttatccacgagaagtaaagcttgagaaggaagatggaggtattctaagggtcagaaaagccatggagacaagacgcgctaatcagatgcatggtttattcaggactctaactgataacatggtagtcggcgtttccaaaggattcgagaagaaacttcaattggtaggggttggatatcgtgcaaccatcgaagggaaagacatagttctcaatctcggattttctcatcccgttaggatggaagttcctgctggactgcaagttaaggttgaagaaaacaccagaatcactgtaagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaaatcatggtacattttgtcattggtttattgtatttttcttagagctattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="34763" stop="38227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35012" g_stop="35148" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35149" i_stop="37538" i_length="2390">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37539" g_stop="37927" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="526" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E239915" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35012" e_stop="35148"/>
          <exon e_start="37539" e_stop="37927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAGGTAGTCTGCAGTTTAATTGTGCTGTTTTCTCGACTTCTTTTCTCGGTTTTATTCTTAGATATGGTAAACATTCTAAGTTATAATTTACCTATTACTACTACGTATGATCAAGAAGCTATAATCTACTTACTGGAGTAATTACTTTGAAATTCACGACTGGTTTTGATGTGGACTAGTGATGACTTAGTTCTTCTGACATAAAATTTAAGATTTAAAGGGTCTAATTGATCTTCTCCAATTATATGATATCATATTTTATAACCAAATTGAGATGTTTCCCAGTCCTAGTCCTAATTGATTTTATCCTAGTTGTTAATGAAGAGGAAAGGATAATTTTTTCCTCTTAATAAGGTAAAGAAGGGCAGTCATTTCTTACCACCTTGAAGTTTTCTGTTCTTTTTAGTACTTCTAAGTTTCAAAAATAGTGAACCTCTTTGTGGTTCTAAACTTTACTTATTTGATCTTAACTATTGATATATATTACTTGCTGTAGCCTCTTGCCAATGGTTACCTAATAAATTGATATAATCGAATGCTTCTTTTGCTATGAGGGGACTCGAAAATATGGAAGAAAACGTGGACATTAGTCACTGTAAGTAGCAAAAGAAGTATGTTGCTCGGGAATCACCAAAAATGTTATTGCATTTGTGTTGGATCCTCAAAAGTTCACTACTTTTGGAGGGTCTGACCTGCACTCGGCAGCATTTTGAAGAGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAACGATCTTTTGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAATGATCTTTCTCACTATGAGAAGATTGACTGGCAACAAAGTTCAAATGTAGCAGATCCTTAGTTCCATGACAGAATTAATGATTCTAAGGTCATGAGAAGTGATAAATTAGGCAGAAGAGGGAATATAGACGTAAGAACAGCTAGGACTTCTAGCAAAGGACATATATCAGTGCTAGTCGTAGTGTTTCTAGGCTAAAAGGTATCACAATTAGGGGGTGGTGAGAAAGATCTATAATATCTGGATGCTAATAAGCCATTTGCAAGTCTCAAAAGCCACAAGTGCATATACTACACTTTGGTCAAGGGGAAAATGGAAAAAAATGGATACGGTTAAAGTTTTCAATGTAAACAACAGATTTGAAGAGGAAAACCCCAACTTTAAAAGAAGGAAGAGAAAGTAGAAATAATTAAAAAATCTATGTTTTTGAGTTTAGACACGCACTTCAATTGGTTCTTTCATATTAAAACTCCTTATACTCTCCAACGGCTAGTTAACGACTACTTTAACTTAGGGAAGATCATAACTAATCAGATAAAAACAAGGGAAACTTCCTTTTGAGACATACTCACAGTAGTGAGGTTGAGTAAAACTCTTAATCTTATTCATGTGTATCTGCTCTTTTGAAATTACGGCAAAATTCTAAAGCACTCTCGAATAACCAGGCAAGCCAGTTGTCTATTATGCATTAGCGCAAAACTGCAATAAACAATAGAAATTGTGGGAGTATAATGTGATGAATAAGAAACTTAGCTTACAACTAGAATTTTTAGTTCGTAAAAGTTATCAACTTTGCCAATTATTCTGTAAGTCAAATCTTAGCATCTGTATTTGGTTCGTAATCCAAAAGATACCAAATGGATCCATTATACTCAAAACCCAGCAAACTATCAAAATATGTTTTCTTTCTTCATTTTATAGATATTCTTTTTGAGATGTGCGTGGGATTGTTGGAAATTTGGAAGTATCTCATAAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTG</genome_strand>
        <mrna_strand>AAAGTTAAGGGACCTCTGGGGGAGATGGCCATAACTTATCCACGAGAAGTAAAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGGTTTATTGTATTTTTCTTAGAGCTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238103" ref_strand="+" ref_description="SGN-E238103 [cLED-22-I6]">
      <seq>aaagttaagggacctctgggggagatggccataacttatccacgagaagtaaagcttgagaaggaagatggaggtattctaagggtcagaaaagccatggagacaagacgcgctaatcagatgcatggcttattcaggactctaactgataacatggtagtcggcgtttccaaaggattcgagaagaaacttcaattggtaggggttggatatcgtgcaaccatcgaagggaaagacatagttctgaatctcggattttctcatcccgttaggatggaagtttctgctggactgcaagttaaggttgaagaaaacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="34763" stop="38019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35012" g_stop="35148" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35149" i_stop="37538" i_length="2390">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37539" g_stop="37719" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="318" r_length="181" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E238103" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35012" e_stop="35148"/>
          <exon e_start="37539" e_stop="37719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAGGTAGTCTGCAGTTTAATTGTGCTGTTTTCTCGACTTCTTTTCTCGGTTTTATTCTTAGATATGGTAAACATTCTAAGTTATAATTTACCTATTACTACTACGTATGATCAAGAAGCTATAATCTACTTACTGGAGTAATTACTTTGAAATTCACGACTGGTTTTGATGTGGACTAGTGATGACTTAGTTCTTCTGACATAAAATTTAAGATTTAAAGGGTCTAATTGATCTTCTCCAATTATATGATATCATATTTTATAACCAAATTGAGATGTTTCCCAGTCCTAGTCCTAATTGATTTTATCCTAGTTGTTAATGAAGAGGAAAGGATAATTTTTTCCTCTTAATAAGGTAAAGAAGGGCAGTCATTTCTTACCACCTTGAAGTTTTCTGTTCTTTTTAGTACTTCTAAGTTTCAAAAATAGTGAACCTCTTTGTGGTTCTAAACTTTACTTATTTGATCTTAACTATTGATATATATTACTTGCTGTAGCCTCTTGCCAATGGTTACCTAATAAATTGATATAATCGAATGCTTCTTTTGCTATGAGGGGACTCGAAAATATGGAAGAAAACGTGGACATTAGTCACTGTAAGTAGCAAAAGAAGTATGTTGCTCGGGAATCACCAAAAATGTTATTGCATTTGTGTTGGATCCTCAAAAGTTCACTACTTTTGGAGGGTCTGACCTGCACTCGGCAGCATTTTGAAGAGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAACGATCTTTTGTCCGAGCAACATAAAAGCAGTACATAGTTCTCAGTCTTGACATGTTAAAGAAATGATCTTTCTCACTATGAGAAGATTGACTGGCAACAAAGTTCAAATGTAGCAGATCCTTAGTTCCATGACAGAATTAATGATTCTAAGGTCATGAGAAGTGATAAATTAGGCAGAAGAGGGAATATAGACGTAAGAACAGCTAGGACTTCTAGCAAAGGACATATATCAGTGCTAGTCGTAGTGTTTCTAGGCTAAAAGGTATCACAATTAGGGGGTGGTGAGAAAGATCTATAATATCTGGATGCTAATAAGCCATTTGCAAGTCTCAAAAGCCACAAGTGCATATACTACACTTTGGTCAAGGGGAAAATGGAAAAAAATGGATACGGTTAAAGTTTTCAATGTAAACAACAGATTTGAAGAGGAAAACCCCAACTTTAAAAGAAGGAAGAGAAAGTAGAAATAATTAAAAAATCTATGTTTTTGAGTTTAGACACGCACTTCAATTGGTTCTTTCATATTAAAACTCCTTATACTCTCCAACGGCTAGTTAACGACTACTTTAACTTAGGGAAGATCATAACTAATCAGATAAAAACAAGGGAAACTTCCTTTTGAGACATACTCACAGTAGTGAGGTTGAGTAAAACTCTTAATCTTATTCATGTGTATCTGCTCTTTTGAAATTACGGCAAAATTCTAAAGCACTCTCGAATAACCAGGCAAGCCAGTTGTCTATTATGCATTAGCGCAAAACTGCAATAAACAATAGAAATTGTGGGAGTATAATGTGATGAATAAGAAACTTAGCTTACAACTAGAATTTTTAGTTCGTAAAAGTTATCAACTTTGCCAATTATTCTGTAAGTCAAATCTTAGCATCTGTATTTGGTTCGTAATCCAAAAGATACCAAATGGATCCATTATACTCAAAACCCAGCAAACTATCAAAATATGTTTTCTTTCTTCATTTTATAGATATTCTTTTTGAGATGTGCGTGGGATTGTTGGAAATTTGGAAGTATCTCATAAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACC</genome_strand>
        <mrna_strand>AAAGTTAAGGGACCTCTGGGGGAGATGGCCATAACTTATCCACGAGAAGTAAAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGCTTATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTGAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTTCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213962" ref_strand="+" ref_description="SGN-E213962 [cLEC-80-E12]">
      <seq>gagaactagtcccttgtttttatccacttatagtttattgttttgcccttactttaaatggtcaaactagccgttaactagtcgttgtagagttttaggagctttaataaagaactagtttaggtataataaccataaatcataaggtttttgatgctagtttatactagatgagcttgttgaatcctaggagatacgtttatatgattgaatatccttacagaaagtgtcatacacacgccttaagctagaagaatatccatgatttcaacaattagacgtgattttcaacttggaattttcatttacacgactctcgtctctgatgatgatgatcatcagtttcacagaattttgtgataaaggtatgattctgcaccccaaatgatttcctctcaacttcaaaagccataatatgtgtcttacaccaactctatcaaacattctgccaatacctacggactgtatataaaatttttcataatcttatcactgttgttatgttggtcaattctagtgacaatgtatagatgcacatattttgagtgtttactctgaagatgttctttttcttcatcaaactcggcaggactctaactgataacatgggtagtcggcgtttccaaaggattcgagaagaaacttcattgggtanggggntggatatcgtgcaaccatcgaaaggaaagacatagttctcaatctcggattttctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="36653" stop="37966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36950" g_stop="37666" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E213962" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36950" e_stop="37666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACAT-GGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTA-GGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATC</genome_strand>
        <mrna_strand>GAGAACTAGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCATTGGGTANGGGGNTGGATATCGTGCAACCATCGAAAGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214002" ref_strand="+" ref_description="SGN-E214002 [cLEC-80-F24]">
      <seq>gagaactagtcccttgtttttatccacttatagtttattgttttgcccttactttaaatggtcaaactagccgttaactagtcgttgtagagttttaggagctttaataaagaactagtttaggtataataaccataaatcataaggtttttgatgctagtttatactagatgagcttgttgaatcctaggagatacgtttatatgattgaatatccttacagaaagtgtcatacacacgccttaagctagaagaatatccatgatttcaacaattagacgtgattttcaacttggaattttcatttacacgactctcgtctctgatgatgatgatcatcagtttcacagaattttgtgataaaggtatgattctgcaccccaaatgatttcctctcaacttcaaaagccataatatgtgtcttacaccaactctatcaaacattctgccaatacctacggactgtatataaaatttttcataatcttatcactgttgttatgttggtcaattctagtgacaatgtatagatgcacatattttgagtgtttactctgaagatgttctttttcttcatcaaactcggcaggactctaactgataacatggtagtcggcgtttccaaaggattcgagaagaaacttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="36653" stop="37895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36950" g_stop="37596" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E214002" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36950" e_stop="37596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAA</genome_strand>
        <mrna_strand>GAGAACTAGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204617" ref_strand="+" ref_description="SGN-E204617 [cLEC-14-M19]">
      <seq>gagaactagtcccttgtttttatccacttatagtttattgttttgcccttactttaaatggtcaaactagccgttaactagtcgttgtagagttttaggagctttaataaagaactagtttaggtataataaccataaatcataaggtttttgatgctagtttatactagatgagcttgttgaatcctaggagatacgtttatatgattgaatatccttacagaaagtgtcatacacacgccttaagctagaagaatatccatgatttcaacaattagacgtgattttcaacttggaattttcatttacacgactctcgtctctgatgatgatgatcatcagtttcacagaattttgtgataaaggtatgattctgcaccccaaatgatttcctctcaacttcaaaagccataatatgtgtcttacaccaactctatcaaacattctgccaatacctacggactgtatataaaatttttcataatcttatcactgttgttatgttggtcaattctagtgacaatgtatagatgcacatattttgagtgtttactctgaagatgttctttttcttcatcaaactcggcaggactctaactgataacatggtagtcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="36653" stop="37865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36950" g_stop="37565" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E204617" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36950" e_stop="37565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGG</genome_strand>
        <mrna_strand>GAGAACTAGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214589" ref_strand="+" ref_description="SGN-E214589 [cLEC-79-N22]">
      <seq>gagaactagtcccttgtttttatccacttatagtttattgttttgcccttactttaaatggtcaaactagccgttaactagtcgttgtagagttttaggagctttaataaagaactagtttaggtataataaccataaatcataaggtttttgatgctagtttatactagatgagcttgttgaatcctaggagatacgtttatatgattgaatatccttacagaaagtgtcatacacacgccttaagctagaagaatatccatgatttcaacaattagacgtgattttcaacttggaattttcatttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="36653" stop="37559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36950" g_stop="37259" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E214589" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36950" e_stop="37259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACA</genome_strand>
        <mrna_strand>GAGAACTAGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227378" ref_strand="+" ref_description="SGN-E227378 [cLEL-30-B24](-)">
      <seq>tccaaaggattcgagaagaaacttcaattggtaggggttggatatcgtgcaaccttcgaagggaaagacatagttctcaatctcggattttctcatcccgttaggatggaagttcctgctggactgcaagttaaggttgaagaaaacaccagaatcactgtaagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaaatcatggtacattttgtcattgttttattgtatttttcttagagctattttgaagttaggttcattttgcaagtgacttgacaaattttttatcttgtggatccctttaaatataagagtcacacaatttgaatattgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37270" stop="38315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37570" g_stop="38012" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="465"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E227378" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37570" e_stop="38012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATT</genome_strand>
        <mrna_strand>TCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCTTCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278208" ref_strand="-" ref_description="SGN-E278208 [cLER-9-C11]">
      <seq>aacttcaattggtaggggttggatatcgtgcaaccatcgaagggaaagacatagttctcaatctcggattttctcatcccgttaggatggaagttcctgctggactgcaagttaaggttgaagaaaacaccagaatccctgtaagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaaatcatgggacattttgtcattgttttattgtatttttcttagagctattttgaagttaggttcattttgcaagtgacttgacaaattttttatcttgtggatccctttaaatataagagtcacccaatttgaatattgtatgtaatctggtttcccttacatttcttttaaagctgttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37289" stop="38367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37589" g_stop="38061" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="501"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E278208" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278208" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37589" e_stop="38061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATTGTATGTAATCTGGTTTCCCTTACATTTCTTTTAAAGCTGTTCTGAAAAA</genome_strand>
        <mrna_strand>AACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCCCTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGGACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACCCAATTTGAATATTGTATGTAATCTGGTTTCCCTTACATTTCTTTTAAAGCTGTTTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222349" ref_strand="+" ref_description="SGN-E222349 [cLEL-16-E4](-)">
      <seq>cttcaattggtaggggttggatatcgtgcaaccatcgaagggaaagacatagttctcaatctcggattttctcatcccgttaggatggaagttcctgctggactgcaagttaaggttgaagaaaacaccagaatcactgtaagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaaatcatggtacattttgtcattgttttattgtatttttcttagagctattttgaagttaggttcattttgcaagtgacttgacaaattttttatcttgtggatccctttaaatataagagtcacacaatttgaatattgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37291" stop="38315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37591" g_stop="38012" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="444"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E222349" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37591" e_stop="38012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATT</genome_strand>
        <mrna_strand>CTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227157" ref_strand="+" ref_description="SGN-E227157 [cLEL-30-B22](-)">
      <seq>gaagaaaacaccanngaatcactgtaagtggttacgataagtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaaatcatggtacattttgtcattgttttattgtatttttcttagagctattttgaagttaggttcattttgcaagtgacttgacaaattttttatcttgtggatccctttaaatataagagtcacacaatttgaatattgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37421" stop="38315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37708" g_stop="38012" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="310" polyA_stop="329"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E227157" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37708" e_stop="38012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAACACCA--GAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATT</genome_strand>
        <mrna_strand>GAAGAAAACACCANNGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227595" ref_strand="+" ref_description="SGN-E227595 [cLEL-30-B12](-)">
      <seq>agtcagagatcggtcaatttgcagcttcaattagaaaatggagacctccagagccatacaaaggtaaaggagtgaaatatgctgatgaaatagttagaaggaaagaaggtaaagcaggcaagaagaagtaaatcatggtacattttgtcattgttttattgtatttttcttagagctattttgaagttaggttcattttgcaagtgacttgacaaattttttatcttgtggatccctttaaaaatcaccctcacacaatttgtatattgtaaaaaaaaaaacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37445" stop="38291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37745" g_stop="38012" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="271" polyA_stop="290"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E227595" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37745" e_stop="38012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATT</genome_strand>
        <mrna_strand>AGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAAAATCACCCTCACACAATTTGTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746325" ref_strand="+" ref_description="SGN-E746325 [GI|47104729]">
      <seq>tttggttcaaaatggagctaactaattcaagaggtactagtttaagagaaaaaataatcaggggaagtagtttgagagggagcttaagtagaaagaggaatagtactaacaactccaggtggaatggcaatgatggggagatttttaatcgttcaacgagagacgaagatgatgaagaggctcttaaatgggcagctcttgaaaaacttccaacgtttgatcgtttgagaaaaggtctcttgtttggatcacaaggtgcatctgctgaaattgatatacatgatattggttttcaagaaagaaacaagttgcttgaaaggcttgtcaaagttgcagatgaggataatgagaagctcctgttgaaactcaagcaaagaattgacagagttgggatagatttgcctgaaatagaagtaagatatgagcatttaactattgaggcagatgcatatgtaggaagtagagctttgcctacatttatcaactttatctctaatttttttgaggatatattgaactctgtccatatcctaccgagtcgaaagaggaaactaactattcttaatgatgtgagtggtatcattaagcctcgcagattgactttgcttttaggacctccaagttccgggaaaactacattattattagctttggccggaaagctcgactctgcccttaaggttactggaaaagtgacctataatggacatgaaatgaatgagtttgtgccgcaaagaacagctgcttatattagccagtatgatttacatattggagaaatgactgtgagagaaaccttggaattctccgccagatgccagggagttggatcgagttatgagatgttggttgaactgtcaagaagagagaaagcagctaaaatcaagccagatcctgatattgatattttcatgaaggcattagcaacagagggacaagaagccgtttttgttacagattatgttctgaagcttttggggctggatatttgtgcagatactatggtgggagatgaaatgattaggggaatttcaggaggacaaaagaagcgtgtgacaaccggtgaaatgctcgttggaccgtccaaggcacttttcatggatgaaatctcaactggattggatagttctactacttactcaatagtgaactcactaagacaatctgtgcaaatcttgcacggaactgctgtgatatctctcttgcagccagcacccgagacgtacaacttgttcgacgacattattctgttatcagatgagaaaattgtctatcagggacctcgagaggatgtccttggcttctttgagtccatggggttcaaatgtccagacagaaaaggcgtggccgacttcttgcaagaagtgacttcaaagaaagatcaacagcaatattgggtgaggagggatgaaacttaccggtttatcacttcaaaagaatttgctgaggcacatcaatcgttccatgttgggaggaaactcgcggataagcttgcagcttcatatgacaagagcaaaagccatcctgctgctttgtcaactcaaaagtatggtatagggaagaaacaactcttaaaggtctgcactgaacgagaactcttactaatgaagaggaactcatttgtttacatcttcaagttcattcagcttacaattgtggcactcatatcaatgactctctttttccgtactaagatgccgcgtgatacaactgaagatggagtaaaatatgttggtgccctctttttggttgtcactcagattatgtttaacggaatggctgagatcgccctgacaatttacaaacttcctgtcttctacaagcaaagggaccttctcttttacccttcatgggcttatgcaatgcccacatggatactcaaaatgcctataacatttgctgaagttggactttgggtgttcctcacttactatgtcataggatttgatccgagtgctgcaagattattcaaacagtttttgctactcatattactaaaccagatggcgtcagcattgtttcgcttcattggggcagctggaaggaccatgggagttgctaatacatttggaacatttgttctgcttttacagtttgcattgggtggattcgttctttcacgagttgatgtgaagaaatggtggttatggggttactggtcatcaccgatgatgtatgctatgaattcaattcttgtgaatgaatttgatggaaaaaagtggaaacaaattgcaccaaatggaactgattcacttggagttacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41928" stop="64476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42228" g_stop="42612" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42613" i_stop="43133" i_length="521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43134" g_stop="43254" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="506" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43255" i_stop="43342" i_length="88">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43343" g_stop="43516" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="680" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43517" i_stop="43658" i_length="142">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43659" g_stop="43818" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="840" r_length="160" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43819" i_stop="44160" i_length="342">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44161" g_stop="44237" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="917" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44238" i_stop="44298" i_length="61">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44299" g_stop="44352" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="918" r_stop="971" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44353" i_stop="44448" i_length="96">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44449" g_stop="44841" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="972" r_stop="1364" r_length="393" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44842" i_stop="44923" i_length="82">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44924" g_stop="45205" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1365" r_stop="1646" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45206" i_stop="45301" i_length="96">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="45302" g_stop="45618" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1647" r_stop="1963" r_length="317" r_score="0.991"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="45619" i_stop="45713" i_length="95">
            <donor d_prob="0.635" d_score="0.98"/>
            <acceptor a_prob="0.878" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="45714" g_stop="45878" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1964" r_stop="2124" r_length="161" r_score="0.891"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="45879" i_stop="64035" i_length="18157">
            <donor d_prob="0.882" d_score="0.86"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="64036" g_stop="64176" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="2125" r_stop="2265" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E746325" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>2269</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42228" e_stop="42612"/>
          <exon e_start="43134" e_stop="43254"/>
          <exon e_start="43343" e_stop="43516"/>
          <exon e_start="43659" e_stop="43818"/>
          <exon e_start="44161" e_stop="44237"/>
          <exon e_start="44299" e_stop="44352"/>
          <exon e_start="44449" e_stop="44841"/>
          <exon e_start="44924" e_stop="45205"/>
          <exon e_start="45302" e_stop="45618"/>
          <exon e_start="45714" e_stop="45878"/>
          <exon e_start="64036" e_stop="64176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAATAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAGCTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAGGTAAGTCGATGTATCTTCTGTCATCTTTGATGAACGAAAAATAACTATATAGGCCACACCATTTAACAGCAATGTTCGTTACAGATTCTGCATACATATGTTGTTAGAAGCTTGTGGTCTTAAATATGACTTCTGATCATATCATTTGTATGGCTACAGAAGTTTCTCACCAAAGCTAGTAGAATAAAAAGCTAAGTTTTGTGTTTCTTCTGTAATGAATTAATAAGGATATATTTTTATATAAACTAGAATGGAGCAAACAAAGTGGCACGAATAGTGACGATTTATGTAATCAAACTATCTTGCTTAAAAACTGAGACGTCGTAGTTGTTGTGCTGTTCTTCATCTAAGACTAATTTGTTTTTCATATTTAATTGAGACGGACTTAAATGGAACAACATGGACAATGATGATTCATATTGTCATTAATTACTCCGACTTGGTTAGAATTGAGGCATAGTTATTGTGATGTTGTTGATTATCTATGATAAGTTGTTTGACAATTCTTTTTCTTTTCACAGAGTTGGGATAGATTTGCCAGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTCTAATTTTTTTGAGGTAAAAAGAAAATCTTGATTTCGAATCTTGAACAAAAAGGATGTTTGTAACTAACTTTTTTTTTTAAAAATTTTTTTGGGATTCATAGGATATATTGAACTCTGTCCATATCCTACCGAGTCGAAAGAGGAAACTAACTATTCTTAATGATGTGAGTGGTATCATTAAGCCTCGCAGATTGACTTTGCTTTTAGGACCTCCAAGTTCCGGGAAAACTACATTATTATTAGCTTTGGCCGGAAAGCTCGACTCTGCCCTTAAGGTATCACCATTAGTTCTATGTATCCAAGACTGACAGTTCAAGGATTAGCTAGCTGTCATTTTTGTCGTTCCGACAATTAATATATATTCTTCTTATTATAGACTGTCAATGCATAAAACTCATTTGTTTGTGTGGAAAACAGGTTACTGGAAAAGTGACGTATAATGGACATGAAATGAATGAGTTTGTGCCGCAAAGAACAGCGGCTTATATTAGCCAGTATGATTTACATATTGGAGAAATGACTGTGAGAGAAACCTTGGAATTCTCCGCCAGATGCCAGGGAGTTGGATCGAGTTATGGTTAGAATTTGTCTCCTTTTTCCTTAATCACTAAACCAGTAATGAGCTTTAACGAAAATAACTAATTGCCAACTAAAAATGTGCATGGTTTGTAAAAGTCCCTAAAAGCTTATAGCGGTATTGGATCCAATAACAATGAATCAATTAAGGCTTGTAAAGCCTTTAGCACTTTTTATTATATGCATATTTAATTTATTGCCACTAAAATTAAAGTTGTTTTTTTATTGTAGTGAATCTTGATCATACTTCAAACTTCTTGTTCTTTAAAAAAAGCATTTTGTGTTGAAATTTAACTAACGTGGATGATATATCGATTGATCTTTCTCGGAATTATTGTTGCAGAGCTGTTGGTTGAACTGTCAAGAAGAGAGAAAGCAGCTAAAATCAAGCCAGATCCTGATATTGATATTTTCATGAAGGTAAGCAACTAGAATATTTCCTTTCTCGAAAAGAAATGCTTATAGTTATTTTGGGATGTAGGCATTAGCAACAGAGGGACAAGAAGCAGTTTTTGTTACAGATTATGTTCTGAAGGTAACAGAAATATGTTTCACTAATTTCTCAAAATTTCCGACGATCAGAAGGCTGAGGAAAATTTGATAACTAAGTGATTTGTGTATTCCACTGCAGCTTTTGGGGCTGGATATTTGTGCAGATACTATGGTGGGAGATGAAATGATTAGGGGTATTTCAGGAGGACAAAAGAAGCGTGTGACAACCGGTGAAATGCTCGTTGGACCGTCCAAGGCACTTTTCATGGATGAAATCTCAACTGGATTGGATAGTTCTACTACTTACTCAATTGTGAACTCACTAAGACAATCTGTGCAAATCTTGCACGGAACTGCTGTGATATCTCTCTTGCAGCCAGCACCCGAGACGTACAACTTGTTCGACGACATTATTCTGTTATCAGATGAGAAAATTGTCTATCAGGGACCTCGAGAGGATGTCCTTGGCTTCTTCGAGTCCATGGGGTTCAAATGTCCAGATAGAAAAGGCGTGGCCGACTTCTTGCAAGAAGTATGTCTTATAATAAACAAATAAGAATGACAATCATTGATCTATTTTCCCTTCTGATGGTGGAAATTTAAATTCGTTGCAGGTGACTTCAAAGAAAGATCAACAGCAATATTGGGTGAGGAGGGATGAAACTTACCGGTTTATCACTTCAAAAGAATTTGCTGAGGCACATCAATCGTTCCATGTTGGGAGGAAACTCGCGGATAAGCTTGCAGCTTCATATGACAAGAGCAAAAGCCATCCTGCTGCTTTGTCAACTCAAAAGTATGGTATAGGGAAGAAACAACTCTTAAAGGTCTGCACTGAACGAGAACTCTTACTAATGAAGAGGAACTCATTTGTTTACATCTTCAAGTTCATTCAGGTGACAACTTGTCAATGAAAATATTAAATTTCAAGTCTCCGGCTCATCATATTTGTTCGCAAGTACTAATGCCTCATGGTTTTGATCTGTTCACAGCTTACAATTGTGGCACTCATATCAATGACTCTCTTTTTCCGTACTAAGATGCCGCGTGATACAATTGAAGATGGAGTAAAATATGTTGGTGCCCTCTTTTTGGTTGTCACTCAGATTATGTTTAACGGAATGGCTGAGATCGCCCTGACAATTTACAAACTTCCTGTCTTCTACAAGCAAAGGGACCTTCTCTTTTACCCTTCATGGGCTTATGCAGTGCCCACATGGATACTCAAAATGCCTATAACATTTGCTGAAGTTGGACTTTGGGTGTTCCTCACTTACTATGTCATAGGATTTGATCCGAGCGCTGCAAGGTAAGAGAAGAAATAGATGATGCAGTATAAAGATCAGGTTACCTTCAACAGCTTCCTTTTTCCCGTGATTACTTAACATCAGTCTATTATTGCAGATTTTTCAAACAGTTTTTGCTACTTCTATCACAAAACCAGATGGGCATCAGCATTGTTTCGCTTCATTGGGGCAGCGGGAAGGACCATGGGAAGTTGCTAATCCATTTGGAACCTTTGTTCTGCTTTTGCAGTTTGCATTGGGTGGGTTTCTTTCTCTTCCCAAGGTATTTTTGGTAGATTTTAGTGTTAAATCAACCTCTTAATCCTGCCAAACCATACCATCTCTTACCCAACAACGCGGTTTGTTGTTTATAGAGAGAACATCTGCGGCGATGAGCGGCGTTCCCCGGCCGAAAGGCCAGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGTGGAAAGGGATAAATGGGATAATGCAGTTTCTTTATTGTAGTTATGTGATGCCCAAGGCGGGTGGGGGTGTTTTATTCTGGTAATTCCCCTCCACCCTTACGATCCGGGGATTATTTTTTTTAATTTAGTGTATGTATAAATAATTTTGTGATGCTTTTGGTTACCATAAGTCGGGGGTGGCTTCGGGGGGTTTGTGGGGTTCCTTAAATTCATAATTCCCAAAGGAGTGCTAATTTTTTTTTTTTGGGAAACCCCTTGGATTGAAATTGTTGGTATCATTGGACAGGGGGCCGTTGCCTTCAGCTTTTGTTCAGGGTTTACACCCTATGGTTGGATGGCTTTAGGCATGTATACAAAAAAAACAATGAAATCACAAAGAACCCACCTTTTTAGGGATAGGAGAGTTTTTTACCATCATCATCTTGCTCAGTTCCTTTGTTATTAGCACTCAACCCACCGCTCTGATCCCCCATTTCCTCTTCAACTCTTCTGCTTTTGCCTTAGCAGCACAGGTCTTTACGAAACTTCTTCCCTTCCCGCTGGCTGCTGGTTTTTCAACACCTACAGGCATTAGCGTTCTTTACAAACAATGCAAGTAGAACAAAACCCAAAGTGACCATCATCAATACAAAATTGATCGTTTGAATTCTTCAACAAGTTTTCAACAGCGATCGAAACAAATAGAAAGATGAATGAGCAGTAAGATTAAAGAGGTCTTGATGCTAGGGTTTGTTGAAGAAACATCCAAAAGAAATATCAACAAAAGTGTAGGCGACTGTTGGGTTTTTGGGTGTATAATATGTTGATATTATTAGAGAGAGGCGTCTATTCATGCGTTTTTGGTTTTCGAAATTGTATTTGGAAATACTTTTTGCTACCTTAACTTTTGCAATTTTGAGTTTGGTGCCATATGACTAAACATATTTAGTTCTCTTAAAAATTATTAATCAAGTTTCTCAATATATTTTATTTATTTATTTTCTATTATTAATTATGTGATATTCATCAATTTTTGTGTATTCGAACTGATTCAATAAAATATTTGTATCTTATTGTTTCTCATATATCATGTAACTATAAAAATAAAAATATATAATATTTTAAAGTAATAGATGAACTCAGTTATATTATTTTGAGGCAATATGAATACAACTTTGTTATAGCATAACTGTAGTGAAATTTTGTGGTTTAATGACGTATTTCGGTTATAACAATAATATGTATCAACTATGATTTTATAAGTGATGTATGAGAGAAATTGTATTTTTATTTTGTTTATGTTAAGTTTATAAACAGATTGAGTTACGTGTATCAAAATCAAACTTGTAAAGTAATTATAATAGTGAAAAAATCATAGAAAAGAGAATAATAACAAGCAATAATAAATAATATGACAATGAAGCGAATAACACAATAAATAATACTAAGATCTAAAATAAGTTAGTATGAACGTAAAAATAAAGAAACTAGACGACATCTGATTAAATACTAACCCTTCAATTTCAGTATCTTCATATCTAATATCATGTCATCGTTAAATTACATATATCATATTCATCTAATCACATCTCTTCCCTACATTTTTTATTTGTTTCTACATGTACTTGTATTTGACCATAGTCAACCTCTTAATCTTCATATCTATATTAAAGTAAGGGCAGAAGCATGACAAGTTGTCAAGTGAAAGTTTAATATCAAGCCAGTTGGGAGTTTTAAATTAAACCTCTTCAAACCATAACTAAAAATTTAACTATTCAAAACATAAAAATAAATAAAACAATGATAATTTGACCCAAAAAGAAAATTACCAAATATTATACAATTCAAGATAATATTATTGGTAATTATTCATATATTTTTCATTGCTTATATATTATTTTATGCAAAAATAAGACGAGTTAAAATTGTTTGTGATTTTGAGCTTGACTTAATTCTATATCGATTTGAGTTGTGAAAGCAGGATATGTTAAATTATTATTATCATAATTTTGTAAAAACAAATTTTTTTCTTTGCATGTGAAAAGATGATACTGGGAGTGTTAATTCCGAAAAAAAAAACAGGATATGTTAAATTATTATTATCATAATTTTGTAAAAACAATTTTTTTTTCTTTGCATGTGAAAAGATGATACTGGGAGTGTTAATTCCGAGAAAAACGTTTGTATTGAATTCATGTGATTTGTCGCAAGGAAATTATTAAAGATGAATTGAAGAGAATATATATATGTATGTTGATAACTTACTCCCATTTGTTTCAGTATTGCTCCCTCATGTGGTATGAGCTCATTCTTGATGTTAAGTGTAAACTAGTTGGGTCTATTGTCTGTAACTTCACAAACCGACCTGATTGAATCAGACTCTTCAGTTGTTCTAACAAAGCATGGGTGTTTCTTGATCAAAGTCACCACATTTATGAGCACTATGAAATACAAGAATCAAAAAGAAAGATTTCTTCAAGGAATCAACAAGACAAGAACATGTGCTGTCATATTGAACTTCAGTTACAAATCAAACATTAGTTCTCATAATTTTGTGTGTCATCTCAACCTAATATATCACTCCCTTTGCAATAAGACACTTGTAGTTGTGCCTTAAACTCGAGCCAAGGCCTCTCTAATCTCCAAAGATCAGCTATCTGACAATTCTCCCCTAACTTCACCCAAGAAATAAGCCTGGATAACTCTTTTTTCTTCACTTTGGGACTCAATCCTTTTACACCAATCCATGCATCACGAAATGCTGGGAAGCACTTCTGCTTTGCAAATTCATGGCACTTCCCATTTGCTGCTTCAAGGCAAGCCTCCATTTCACGTTCTTCGCATCTCGCCCTCTCTGCAAAGTCTTGATTGGAAGCACTGCCAGTGAATGATTTCCACCAAGGAGTTTTACATTTGTCTGAGGCTGCGATAGAGCAACCAATCCTAGCTCCAGATTCACATTGTTGAGTGACTTGAGATTCACAAGCCTTGTATGCAGAGGCCCAGGAGATAGGGTCTTTAAATGCGAGGATGAATTGCCCAACTGTTTCTTCTTGTGGGCCAGCCTTGATGGGACCTCGAAGAAGAGGGACTGGTCGGTCAAAAGGAATCAGAGTCTTTGATGCAGAGTACTCCTCGAGGTCGATTGATGGCACTTCTGGTTGTGGTCGTCCTGGTGCTGTCATGATGCAGAGTACTCCCTGAGGTCGATTGATGGCACTTCTGGTTGCGGTCGTTCTGGTGCTGTCATATAGGCAGTTTTGTTTGTTCACAATTTTGGGTCCTGAAGAGACGAAACCAATATCAGGATACTCAAAGTAGTTTTCTCAAGGCTGAATTGATATCATCACCAGTAAATGCATCTGCAACAAGGACATTTGGATAAGGAACTTTTCAAACTTTTGGTATTCTGTATAGATTGTTGGGTATGTTTTTGATAAAATGTAAGGAAAACAATTGTACATAAATCATTTAAGATAAAGAAGTTGTTTTTGAGAAACAGAATTTTTTGCTACTGGTACTCCATCAACGTTTTTGGATTGTCTTCCAATAACAAGTTTGGTTTTTGAAATAGACATGAGAGTTGTTTTGGAAAAAACTTCATTGGAAAACATCCCAAATTCAAACACCACAAAGTGTCTATATCACGAGTATCTAGAAGTTCTCCCAACACAAGGGGCTCATACTTCATGGAATCATGCCAAGTGACATAAACTGCAGGGGACTGAATAAACTGATAATATGTATATGCCCGCGGGAAGAAGGGGCTGGGTACAATATAAAAAATTGTACCCCCCTAAGTATCGCTGTCTCCTTTCGATAAGGTTGGAACGATACTTTAAGGGATACATAAAATTCATGATATACGATAAGTGTTACATTTCATAAGATCAATAAATAAAAACAATAAGCATTAAAAGCATTTTCATGTAATCTTTAAATCATTTCAGAATGTTATATCATTTCTATGCATAGAGGTATGTATTACTGTTGAGCGCTTCACTCAGAGGACTTCAGTTTAGAAACAAACAGAAGCAAAACAACCAGATCAACATTCAGTGAGGCAGGGAAAGATGATGAAGAGTGGTATATGTAGCTAAAAGGAAAAGCAGCTGTGTTGGCAGTACGAGTCAAGGAGATGCAGTTAGGGAAGAAGATCAAAACCATAGCCACCTTAAGTTTTGTTGGCTAAATCAACTGAATGAAGCTTTTAACATGGTGTAATATTGTCCGCTTTGGCCAAATCCACATGGTTTTTTTTCAAAAGGCCTCACACACCTCATATGTAGCTTTCCAGTCTTTTTAAGCTACCACTTTGTTTGCACGCCCAACAAAATTGTTGCCGAATTCCCATCGCTGATATCTTCATCAGGGGATCTCAGAAATCCCTTTCCAAGTTTAATTTTTGTATATAAATGACATGGACAACTCACATAATTCTTATTGACCAGTTATTCGAACTAGGGACTTACTTGGGATCCAGGTTGAGTACGGAAGCACGTGACAAAGGTTTTGGGATTTTCATCTTCTTTCTAATCTAATTTCTTTATCCTTGTATCCTTCCAATCAATAAATAATAGTAATGCTTATATTCCTTATTTCAGTTTATTAGAGTAATAATACAATCAATGAATCTTGTTTACTGTGAATTGGAATAGTGTTTGCTTCATTTCCTTTAAAGATCTCAATCGAGAAACATGTAAACTTGCACATAGAGTGAACAATCAAACAGATATATTTTACCAAAAGAACACTATCCAAACAGAACATTCCATTCCAATTAAGTTTAAAAATAAAAAGTTGAAGAATATATTTTTTAAAAAATGAACGAACAAACCATAAACATACCTACAAATTGATAGAGAGAAAGAGTTGGCAGCCATGGGAGACGAAATACTCGAGCTTCCGACTTTTTCTTACTTTGTTCATCTAACACTAGAAGAGGATTGGGCCCCCGATTCTTTTGCTTTAACATGGGCCTCAAAAACTCTTTTAGTAAATAACCAAAACAATTATGAACCTTTTACAACTGAAAATCACATGTGTAAACTTGTAATATTTTGTTGGTAAAAACTAAATAGTATCAAAATGAGAAAATGTTAGGCTATGCTATAACTATTCAAATTTCAGACTCCAATCTAATAGTTTATCGTGGATTATGAATAAACATTATATTTGAGTTTAATGTAATTTCTTAAAAAGCTATATTTAGCACGTTTTTTTTTTCAAGTATGGAAAAAAAATATAATAATATCCTAAAAAGGTATATTTGTATATCGGCCTATTTTTAGAAATATAATAACCAGGGCAATAGTTATATTTACATAGTCTACATTCGTTTTGCAATAATATTTATATAACTTTATGCATGTTAAAACAAGTACTTTAAATAACATGTGATAGCAAAATTAATTACTGTCACATTATAATTAAGTAAATTAAATGCACTTTCTTCCGTGTGATCGGACACTTTAAAATAATGTAGTAGCATGAATGTAAGTTGAGAACATAATATGTCTACATTTATTAAGTCAAGCTTGACTAAAAACATTTCACAAGTAATGTCAATCAATATTTGATTATACCAAATATTACTACTCTTCTTTTAAGCCATGTTTTATTATGAATTTTTGGCATATATTTTTTTTTCTCAATCCACACGAATGAAATAAATAAATATTTATTTTAAAATTATTTTTTTCATTAAATGACTTATTTTCCTTTTTTATTGGCTTAAAAAAGGATAATTTATTATTTTTATAGCAATACTTTAATTTCAGTTTGTAGTATGATTGATACAGTAACTTTAATTTAGAATTATAAATTTTTTTAAAAAAATATGGGCTTTTTAATGTAACTGAGTCCATATTTCAATTGGCTTTTGAAATTGTCCAATAATTCCGCCAGTCCCGCCTTTTTCTCCCACTTTTTACTAATTTCAAATATTTTCGCTAAGCCCAAAAAAACAAGAGATTATAAAAGCCAAATACAGCTCTCCTGTTTTTTTGCTCTCTCTTATATTCCCTCATCCTCCCGCCACTGTACACACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTATGTAAGAAAGATTCTTACTTTGAGATTTTAAATATTCTTTACTTTGAAATATTTGCAATTTAGTTGCAAAAACGTTTAATATAATTTTAAATGGCATGAAATTATGCTTTCTATATGGTATATCTGATATTCTGCTGCCAAACTTGATGCTATCTGAAATAAGAAGCATAATTTAAGGGACTGTTGTTGATAGTCTATCAATCCGTTTTTATTTGGCATCATTTGTCTTTATTCAATATTTTACTTACATGGCTATTTCTTTTTGTAAACAGAATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGGGTAAGTCTTGAACCACTTTCCACTCCAACATCATTTTTGTTATATATAAATTAGTTCAAGGATTTATGTGTTTTTGGTACTTTCATGTTACAGTCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAGGTAAAGTGTAAATTAACCATAAACTTACATTATTCAGGTCCTTTCATTGTGTTGATATACTCTTTACAATAGGTTTGATAGGAATGTGGGTACTTTTTATGTAGTCTTAATTATTAACTTAATGTTAAATTGTATCTGGGCCTTATTTGTGGCAAGTGGAGCTTTTTACAGATAATGGGTGGAGATGATACTTGGGGATCTAGTATGTTTGCTTACTGTTAAGGAATGAATATAGTCATATTCCTTGTAATATATGTGGACAACTTAATTCTAGGGGTTCATAGCAAATCTGTAGGACTTTCCTTTTAATTACTTCCATAGTTAGAAAGATCTATATGTATATAATCGTGTCACTTCATGTAATTTTATGTCAGCTTTTCTTCTTATTTGATATATACATGGTATTAGAGCCAGATTTATCCTCCTTGGATTTGTGGTTCATACTCTAGTTGGACCTTTGTGTAAATAGGTGTTAGCGTCACCTTGGTTGGTGAATTGCTTATACAGACTTGTGCAATTCTCCCTCTTGAGCTAGTTTTTGGGTTTGTGTTAGCATGGATGCCCTATCTTTACATCTACTTTGATATGTGTTTTCTTAGATAGCATTAAAAAAAATTCTGTTTCAATTTGTTTGATTGGTTTTGACATGACACAAAGTTAATGTAAGTAAATAAATACTTTTTAATGTTGTGGTTTTAAATTTAAGATATGTATAAAGTACTTAAAAGTCCTTTAGTATTGGGTTTGAACATCCCAGGATTAAAGTTAAAATTAAAAGAGTTGCCGTTGTTTGTGTTGACATTGGACTCTCAACTTACCATGAAACTGCTTGTATAGATTTGGTAGTTTTCTCCCTATGACTTGGCTTTTGGGGTTATTTAAACACAAGGTTCACACCTTTTATGGTATCAGAGCTAGATCTGTCACTGTTTAGGTACCTATGGTGATGTTGTCCACAATCTAATTGGTGGTCTTGGTGAGTTTAGGTGTGTGGTGGTTGTGGAGGTTTTAGAGTTCGTTAGAGTCCTACACTTATTGGGGAATGGATTGATGGTCTCCTAGTTTATATTTGAGCTATACTCCCTCATGAGCTAGTTTTGGTTTGAGTTAGGCCCAAGGTTCATATTTTACAGTTGGTTGAAATTTTTCTCCATTTATCATAGCCCAATTACTGTAAGTTGAGGTTTGTTATTTTACTTATGGCCATAAAATGTATCCATGTATTGACTAATTTTTATTATCTATCATGTAACTAGGCTGCTGATGGTGAGGACGATTACATTTGCAAGATTGTTGAATTCTTTGAAGCAGTTGACGGAGTGCAGTATTTTACAGCTCAGTGGTTTTACAGAGCTAAGGATACTGTAAGAAATACCAACTCTATAATCTGAAAGGTTCTTGCCCCCTGTGATGCTATCATGGTCTCACATCTCTTTTTCCCTGCTAGGTTATTAAAAGCCATGATCAGTTCATTGACAAAAAACGTGTATTCCTTTCTGAAATCAAGGATGACAATCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCTCAAATGTATGTCTTTGTTACCTTGCTGGTGAGTACTGTGAATTGGTATTGAGTGGTTGAACTAAAAATGCAGAATATTGCTGCAGGCAACTTCACAGTTCAAGGAAAATGTAAAATCAAATTGTGATTTCTACTATGACATGAAGTACTTGCTTCCATACTCTTCCTTCATTAGCTTGCCTCCTGGTATTTATTTTTTGTCGACTCTTTTCAATTATTGTCCAACAGTGTTGGTCCTTTTGTGTTAGTATTCAAGCTTAAACATGCCTAATTGAGAGGTCAATTCTTTTTAGATACTACAAGTCCAGTTAGTTCATCTTCTACTATATCAAGTGACATTGATGCTGGTGAGGTCAAAGAACACAATCTGGAAAAGAAGCTCTTGGATCTATATTCAGGATGTGGAGCAATGTCCACAGGGTTATGCTTGGGTGCCAATAGCAAAGGCGTTAAACTTGTTACTGTATGTTCTTTCCTTCAACTTATTCTATGTTTTGCCAATTTGAACCAGCAGAATATGACTTACTTTCTTGATATTTGATAAGACCTTTAGTCCTGTTAATACAAAATCTTGGATGCAGAAATGGGCTGTTGACCTTAACAAACATGCATGTGACAGTTTGAGATTGAACCACCCTGAGACTCAGGTGAGGAATGAGTATGCCAGTGATTTCCTATCACTTCTGAAGGAGTGGGTACAGCTCTGTGTCTCTTGTTCCTTGATAAAAGGCAGTGTTCCTCCACACCCTCATTTGAAAGTAACAGATGAAGTTGATGAAGATGAAGAAAATGATGATGAAGGTGAAGATTCTGGTGATGATAAAGAAGGTGAAATTTTTGAGGTCGAAGAACTCCTAGAAGTTTGTTATGGAGATCCAAAAGAGAATAACAAACCTGGACTTTACTTCAAGGTACTTGACCATTGAGCTTGGAATTCTTTAATTCTTTGGTAGAACACAGATTTATTATGTGGAAAAGCTGAAGTCATTTTATGTTTTTTTTTTCTGTGTGTTTCTGGCACTTGTCATTTTCTGAAATCACTTTGATTACTTTGTGCCTAGGTTCGCTGGAGAGGTTATGGTCCAGAGGAAGACACCTGGGAGCCAATAGATGGCTTAAGGTATACACATGAAACAATTTATTCTGAAATTTTTATGTTTATTTGTTTAAAAACATTGGTTCTAACTAGTTGACATTTGTATAGTGACTGCCCGAAGAAAATCAGTGAGTTTGTGGTGAAAGGCTTCAAAGCAAATCTTTTGCCGTTGCCTGTAAGTAAATCCCTCTTTCAGTCCTACTGGCTTTGGGGTTAAAAGATCTGAACCACTTCTAGGTTATCAACTTGCTAACGATTTGTAATGCTGACCATACTGATTGAATTTTCTGTTGGTTATTTTCTAGGGTGATGTTGATGTTGTATGCGGTGGACCACCTTGCCAAGGAATCAGTGGGTTCAATCGTTTTAGGAATAAAGAAAATCCGATGCAGGATCCCAAAAATAAACAACTTGATGTCTACATGGACATTGTGGATTTCTTGAAACCCAGGTTTGTATTAATGGAGAATGTGGTGGACCTTGTCAAATTCTCCAATGGTTTCCTTGGGCGATATGCATTGAGCAGACTTGTAGGGATGAACTACCAAGCACGGATGGGAATGATGGCAGCTGGTGCGTATGGTCTTCCACAATTTCGTATGCGTGTTTTCATGTTTGGAGCTCTTTCATCAAAGGTAATAATGATTTTGATTTTTAAGTTAATATTTTTCCAAAATTGAATTCAATGCACCTATCCATCATCCTCACTCCGCATAAATCTTGTCATGTTTGAAAAGTTGCCCCAATATTCATTGCCCACCCCCAAAAGTATTGGGAGGGGTGATATTTCCCTAAATTTAAAGTAGGCCTTTTGATTTTTTTAAAATAACAGGGAATCCTGATCAATCGAAAATTGACTAAATGATCACTCTGCTGCACAAGCAATCAAACAACTATGCGTATGAATCGGCAAGAGTTCCTGGATACACGAAAAACTCCTCCTAGGAAAAGCACGAACATAACCACCAAATGAAGACTCACAAATAATAACGTTTTTTGACGACCCCCCCCCACCCCAAAATAAGAAAGAGGAAACTCTTCCATACGCATCGCACACTTACCCAGCTCAAAAATACACACCGGCAAAAAAAATAAACAACACCACTGATACCCGCGCCACTCCATACCCCGCCGACCTCAAAAAAAGANGCACAGTATCCTACCAATACACCAATAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGACTGCGTCCATGATTGCCAGGTGGCAGGATGTTGGTTTCACACATGGAGTCATGAACACTGATAATATGAGCGTGTTAGGACTCACTATTGACTATGGTCCCTTTGGCTTTTTAGATTCTTTTGATCCCAGTTACACACCAAATACCACTGATCTTCCTGGCAGAAGATATTGTTTTGCAAATCAGCCAGATGTAGGTTTATGGAATATTGCGCAGTTTACCTCTGCTCTATCTACTGCCGAGTTGCTTAGTGATAAAGAGGCAGATTATGCTATGGAAAGGTATCTTTAGATACTAGCATTTGGCCATTTGCTCAAATGTTATGTCTCTGTGATTGCTCGATTATTTCTCTTTTGCTGTTGTTGATGTTTATCTGTTGACTTTTTTTAGATATGGTAACAAATTCATGGATGATTATCAAGATATCATGACCAGGAAACTTGGTCTGACAAAGTACAATAAAAAGTTGATTGGTGAACTACTCAAGAATATGGTCTCCGATAAAGTTGATTACACAAATTTCTTTCGATCTCTATCAAACATCAAAGCTGATCCTGCAATTCCAGAGGACCAATTATTGATTCCTCTCAAAGATGTTCTCTTAGATATTGGTATGGAACGCAGGGAAGCCTGGACTAACTGGATAAAGTCATATATACAAGAGGTATGTGACAATGAATTTCCTTATTCAAATAATACAATGCCGCCGCCTCAATCCCAGGGGTCGGCTATATTAATCCTCACTGTCTATGTCTGGTCCATTTATGCTCATTTCAGTCCAATATTATTCAATTTTCCCAAATAGAATGAAGCATATAATGTGTTTAGAATTAGTTTAGCTACTTGAGCTCAACATTGCAGTGAGTAGGGTAATATAAGGTCGGGTAACATAAGGTCCTTTGAAATCGGACTTTGTCCTGGAACCACCCGTATTTGAATAGTTATTCACTTCAATAATAAGTTGTTATGGTTTTGTTCTTTAAACTGTTGTCAAATGTTCTTTTAGGATAGCTGGTTGCTCACCTTGTTTGTTCCTTAGATACCAGTAATGGTAGGTGGTAATGGATAGCAGTTTCCATCCATGGGAAGATGTTCAATTTCATTCCTCCTCTGCCTTGTTCTTCAAGGTTTCCATCTTTCCAGTCTCTTCTACCCTGGGCCCAAAAAAGCAAGAAGAAAGTCATAAAGGAAATAACAGATAGTAGACGTAAGCAATGGGTGAGAAGTAGTTGTGACAACGTTTTTGTATGGCATTGAGTGTGACTCTTATATTCTCATCAATTGAAATGGCTTGTCATGTTAGCTTCCTGCTTCTTCCTCTTTTATGTCTAACACCTTGTGCTCAGATTGTGCTGTGGAAGAGACATCCTTCTACAAGAGGTGTCAGATGACTTGTATGTAGGTAATAGTGTGGTCACCCATTAGGTGGGAGAGGGAGGAAGCTTGCCCCATATCCTTTTTCTCCTTATTAGTAGTAATATTTAGTAATCACATAGTTTCTTATTCTTCATGTGTGTCTACTATTTGTTGCTTCGTTTTGCTTTATATCTTGATATTTGTTGTCATTTTTTTCTGCTTGCAACACTTCCATGAATAACTTCCCTTTTAAGCCGAGGATCTATCGGAAACCTCTCCACCCCACAGAGGTAGGGTAAGGTCTGCATACATCTCACTCTCTCCAGACCCCACTTGTGGGATTACATTGAGTATGTTGTGTTGTATGTAAGTAGTGTTTTTTCTTGAAAAAGAAAGTATCGATATATAAGGCTGATACAACTTGAAAAGCAATGTCAGAGTAAACAACAATTTGAAGCAAAGCCTTGTAACTTACGCAACTTAGACGGTAACTCATTTGCAAATTGAGTTGTTGAATTGTGGTAATAGACAGACAATGCTTGCGTAAAATCCTGCATACACCATTGTTTTATGCGGTTGTTTTTGTGGACTCTTTTCTGGAAATTATCAAGTTCCATTCTTGTATGTGAGGTACTCATGGTGTCACTTTTCTACCTCTTGCAGCTCTCCACAACTGGTGTATTAGATGAGGAGAGGAAAGTTTCAATGAATTTTGTAAATCCAAAGTACATCCTCAGAAACTATCTATGCCAGAATGCCATTGATGCAGCAGAACAAGGCGATTTTGAGGAGGTTCGGCAGTTATTGAAGGTTATGCAATGTCCATTTGATGAACAGCCTGGTATGGAGAAATATGCACGCTTGCCTCCAGCTTGGGCTCATCGTCCGGGTGTATGCATGCTTTCTTGTTCCTCATAAGGTTTCCGGGTGTATGCTTATGCTTTCTTGTTCCTCATAATATCTCCACTATGTAATACCAGAGTTTCACTTGTATATATATAACTAGTCTCCCGGCACGTGCGTTGCACGTGTATTCCAAATAAAAATCAATAAAAAAAATAAATGAAAAAGTATATAATAAACTATTAGGAGAATTATGATGTTTTTTTCGAGTGTTCTCTCAATATTTTCAATCTACTGCACATTAGATAAGTCTCCAAAACTTACCCATTTATAAGCAATTAAATATAGTCAACAAGTAAAATTTTCAAGAAAGACACATCAAGCTAAAGAATTAAAAAGGGAAAATGCGTCGTTACTTAAAGTCATCTTGTATCCCTAATGTGTGTCGTTACAAATGTAACTACTTCCTTAAAAACTTTCAGATGTACCCAGACTTACATTTATAGGCTTACAATATCCATCACTGTTAGAGAAGACTTGGAGTTACTACATTTGTTGAAGAAAATGTGATATATTTTGCTAGCAAACAACTGCAATTTCAATTTATTATTATTAGTTTAAAAGTTTAAACATGGTTTCTTTTCTGTGGGAAGCTATGTGTAGGGAGTTTCAAAGAGAGTTGATCATCATTCAGCATCAAACCACATGTGTACAATAATATTCAATTTTTGATATGTGTGATTATACCTTTCAAACTATTTACTTTACCTATTAAAAAAATTAGAAAGTTATCATTCAAATGAAGTTGGCAAATCAAACGGAAAAATCTAAGACTTAATAAGATTGTACCTGAAAATTAGAAGACATTTTTGTACCCAATGGAAGCTTGTGTTGAATGACTAATATTGAGTATGTTTATATAGTGTAGTCTTGAAGATTTGTTGATAAAAACTCTTTGATATTCCTCAATTACTTAATTTGATCCCTTTCAACTTCTCATAATTAGCAAAATACGTTTCAACTTCTATATTAATTGAAACTTTATTAGTGTTCATCCTATTTGGTTGTTTCACACATAATAGTTGAATAGACTGTTGAACTTCTCATTTTGCTCCTCTATTATGTAATTCAATATTATTATTTAATTAGATATTTAATTTATATTTGGGTAAAGTATTTTATTACTTTTTAATTTAGTATAGGGGCAAAGTAGTAATTCAACTTTACACTTTAGAGCTTCATGCTTATAATAATATATGATATGATAATAGAAATCAGTTCTTCGTTCTTGCAGTTATGTGTAAAAAGTACGTTACAGATTGTATTGTAAGTGACAGAGTGGCCTTCGAGCCACAATATAGGAAGAAGATTCAGTTGGTTTCGCTGCAAAAGAGAGAACTCTTGGTATCATTTTCAAACATTAATTTGTATTTGGAGAAATACTTTTTTCGCAGGTTCTTTGCCTCTTTGGAGCTCATTTTTTACCCAAGTCTTTATGCAACATTTAATACATATGTATAAACGTAAAATTTGATCTATGTTAAGATATGCCCGTGCAATTATTCAGTGAATGGTGTTAACTGACCACTTCTGTAAGTAATAACTTTGCCCTTGTGTTCAAGAGAATCCAAACAACTATTGCAGGTTTAACATCTGGCTATCAACTTGTTTCACAATCCTCTGGCATATGCTGCAGGAGTAAACAAACACACCTGTCACCTATGCCTACAACGTGTTGAATCCCACATCATTCACTTGGCCTTCAACTTTCTTACATGAATCTTCCCATCACGAGCTAGCTTGTGGTGTGCTAGCCTACTGGTTTCACAATGAAAAAGATTTCCAAGTCTATCCAACAGTTTATACAAGTCTAATTGCTAGTTTTCTATATTTGACAGCAACCGGACCTGATCTCATGCCCGCATTAAGTCCTCTGTCGAGGTTTATGCATGCGATAAGTCAAAGTTCATCTTGGTGTAGCTAAACGGGCCTTGAAGGGAACTGTTGATTATGGATTTTGGTTTTAGAAAGAAGAGCAATGGCAATTGATGGGTTGTGATTGGGCAGGAAGTGTTGATGATACGATAAGGAGTTGTTGATATGCTTTTTTACACTTGGTTCAGGCATATTCTCATGAAATTCAAAAAATCAAGAGGTAGTAGTTCAATCTTCTGCAGAAGCAGAATACTATACATCACCCTGCTGTTGGTGCAACTAATCAGGTTCTACAGTTAAAGAAGGATTCTAAGTTTTCCTCTGAGGTTCCAAATACTAACATGTTGAAGTAATATTTGACCTATAAAGGCAGTACAATTAATTATTCAGAGATCACGAATATCCAAATAATCAGTTCATTGCAGAGTAATGTGATACAAAACAAACAGATCATATATATACATCTTCAAGTGGTAACCTGAATACATTAGTTCTATAAGCATTTCTTGAATTTTCCTCATGAAGATGTTCAGCAGGTAAGCTCTTCTATCTTTTCTGGAAGTTGAAAACCTTAATAGCCAAAGCAAATGTGAAGGCAAAAACAAGAGTATATGCAACAGTCACCACTGCAGCTACTCCAACAAAATCATGCTTGAACCCAAAGTAACGCCTCAAGAATTGTTTGGCTGTCTCATCACTATCAGTAATTTTGTTTTGGAGGTCTCCGAATTGTGATGCAACCAAACCATACAATGTCCAGGCAACAGGATCAGCCCAATAGTACCATCTCCACCATATGGGCATGCTCTATTTTTCAAAGAAAAAACATGTCATCATTTTCATGTGAAGAAGGTACAAAATGCAAATGTTTCAAGAACTTACAGGTCGTGGAACAATGAATCCTGAGAAAAGATTCCACATTCCATATCCGGAGACAGAGACAATTTGCGCGACATGTTGATTTGGGGTAATGGCAACACTCATCATTCCATAGAAGGTGAAGTACAAGAGAGTGAAGAACATTATAAACAAGTACCAAAAGAACTTGGTCACAGTCCATTCAAATCCAATCATAGCATAGACGATAACACCATAAGAAACAGCTTGCACAAAGACATATGGTATTTCAATGAAAGTCTGCAGATTAGAGTTATTTAGACTTTTTAAACCGGAGATAGGCTTGTAAGAAGTTAAATCATATGCTTACTTGTCCAAAGGCGTAAGGGATGGCAGAATACATTCCAGCAGCTCTTTCTCTGTAATATACTGTACGCTCAACGGCTACAACAGGCAACACTGATGATGCATTTTGAAAACCAAGGAAGAAAACAGGAGTATACAATGATCCCAAAGCGTTAAACAGGTCTTGTTTCTTACCCCTATAACACAAAGAAATATGCTTTTAGCATGAAGTATTTTCCAGAGTACTTGGTTTTGTCATATGTTTGGGGACTTACACTTTAGTACCAAGATCCCAGAACATTGTCCCAATGGCCAAGGCAATGAAGATTGTACAGATATATCTGACTGCAGTATAAGCAGGATTACGCCAGTATGACCAGTGTTGCTTCCAAAGGCAAGCCATACATTGGATCCAAAATGGTTGTGAGTATTGATTGTTGAAATGCAGGTCTTTTGTACCAGGGCAAGGCATGCTAAGTTCACTAATCAATGTTTTATTCCTCCTGTAAAGGTCTGATTTCTTGTATAAATCAGTGAAATCAAGCCCCAGCATCGTTTCCTGAGCCAAATTTGTGACTTCTAACATCCAAGTTGCTGGATTGTAGCCATCGTGTATTTTACTTACCCCAGGAATTGACTGAATACAAGAAGAATTATTTTGTTATTCGATCGTATTAACTTGAAAAAGGGGAGGCTCGTTTATCTACTTAGACAACTTACCTCAAAGTATCTGATTAAATGGCAAGAATGGTGACCCAATGGACCAACATATATCTCGTTTCCTCCTCGTTTCATTAGAAATAGCTGCAAAGAGTGGTATTTATATTAGTATTCAATGTCAAAAAAGAAAGATGACATTTATTAGATTCACCTCATCAAATGCTTCAAAAATGTCGATACTAGGCTGATGGATGGTACAAACAACGGTTCTTCCTGTGTCAACTGTGTTCCTAACAGTTCTCATAACAATTGCAGCAGCTCTTGCATCCAACCCCGAAGTTGGTTCATCCATGAAAATGATAGAGGGGTTTGCCACTAGTTCCACTGCAATGGTCAACCTTTTGCGTTGCTCAGTTGAGAGACCGTTGACTCCTGGCAGACCAACCAACGCTGACCTTAATGGTGTAAGCTCCACAAGTTCCATAACTTCATCAACAAACATCTACACAAGGATATAATATAAGAAATGTCATATGATTTCCACATTAACTGCATTTAACTTATATTCAAAAGGAACAAAACCTTTCTGGTCTTTTCATCAACATCAAAAGGTAAACGCCACCCAAACTAAATAAACAAAAGAATTCAAAAACTGTAACAAAAAGGGGAAAGGGATATCAATTCCGTTCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAAGCTTTAATCTTGCAAAAACCAACTACTGCTAACAGACTACTGCTGATGTTGTAGTTGATGTGAAGAAATGGTGGTTATGGGGTTACTGGTCATCACCGATGATGTATGCTATGAATTCAATTCTTGTGAATGAATTTGATGGAAAAAAGTGGAAACAAATTGCACCAAATGGAACTGATTCACTTGGAGTTACAG</genome_strand>
        <mrna_strand>TTTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAACAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAACTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGGATAGATTTGCCTGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTCTAATTTTTTTGAG........................................................................................GATATATTGAACTCTGTCCATATCCTACCGAGTCGAAAGAGGAAACTAACTATTCTTAATGATGTGAGTGGTATCATTAAGCCTCGCAGATTGACTTTGCTTTTAGGACCTCCAAGTTCCGGGAAAACTACATTATTATTAGCTTTGGCCGGAAAGCTCGACTCTGCCCTTAAG..............................................................................................................................................GTTACTGGAAAAGTGACCTATAATGGACATGAAATGAATGAGTTTGTGCCGCAAAGAACAGCTGCTTATATTAGCCAGTATGATTTACATATTGGAGAAATGACTGTGAGAGAAACCTTGGAATTCTCCGCCAGATGCCAGGGAGTTGGATCGAGTTATG......................................................................................................................................................................................................................................................................................................................................................AGATGTTGGTTGAACTGTCAAGAAGAGAGAAAGCAGCTAAAATCAAGCCAGATCCTGATATTGATATTTTCATGAAG.............................................................GCATTAGCAACAGAGGGACAAGAAGCCGTTTTTGTTACAGATTATGTTCTGAAG................................................................................................CTTTTGGGGCTGGATATTTGTGCAGATACTATGGTGGGAGATGAAATGATTAGGGGAATTTCAGGAGGACAAAAGAAGCGTGTGACAACCGGTGAAATGCTCGTTGGACCGTCCAAGGCACTTTTCATGGATGAAATCTCAACTGGATTGGATAGTTCTACTACTTACTCAATAGTGAACTCACTAAGACAATCTGTGCAAATCTTGCACGGAACTGCTGTGATATCTCTCTTGCAGCCAGCACCCGAGACGTACAACTTGTTCGACGACATTATTCTGTTATCAGATGAGAAAATTGTCTATCAGGGACCTCGAGAGGATGTCCTTGGCTTCTTTGAGTCCATGGGGTTCAAATGTCCAGACAGAAAAGGCGTGGCCGACTTCTTGCAAGAA..................................................................................GTGACTTCAAAGAAAGATCAACAGCAATATTGGGTGAGGAGGGATGAAACTTACCGGTTTATCACTTCAAAAGAATTTGCTGAGGCACATCAATCGTTCCATGTTGGGAGGAAACTCGCGGATAAGCTTGCAGCTTCATATGACAAGAGCAAAAGCCATCCTGCTGCTTTGTCAACTCAAAAGTATGGTATAGGGAAGAAACAACTCTTAAAGGTCTGCACTGAACGAGAACTCTTACTAATGAAGAGGAACTCATTTGTTTACATCTTCAAGTTCATTCAG................................................................................................CTTACAATTGTGGCACTCATATCAATGACTCTCTTTTTCCGTACTAAGATGCCGCGTGATACAACTGAAGATGGAGTAAAATATGTTGGTGCCCTCTTTTTGGTTGTCACTCAGATTATGTTTAACGGAATGGCTGAGATCGCCCTGACAATTTACAAACTTCCTGTCTTCTACAAGCAAAGGGACCTTCTCTTTTACCCTTCATGGGCTTATGCAATGCCCACATGGATACTCAAAATGCCTATAACATTTGCTGAAGTTGGACTTTGGGTGTTCCTCACTTACTATGTCATAGGATTTGATCCGAGTGCTGCAAG...............................................................................................ATTATTCAAACAGTTTTTGCTACTCATATTACTAAACCAGAT-GGCGTCAGCATTGTTTCGCTTCATTGGGGCAGCTGGAAGGACCATGGG-AGTTGCTAATACATTTGGAACATTTGTTCTGCTTTTACAGTTTGCATTGGGT-GGATTCGTTCT-TTCACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGTGAAGAAATGGTGGTTATGGGGTTACTGGTCATCACCGATGATGTATGCTATGAATTCAATTCTTGTGAATGAATTTGATGGAAAAAAGTGGAAACAAATTGCACCAAATGGAACTGATTCACTTGGAGTTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546066" ref_strand="+" ref_description="SGN-E546066 [TUS-69-D20]">
      <seq>tttggttcaaaatggagctaactaattcaagaggtactagtttaagagaaaaaataatcaggggaagtagtttgagagggagcttaagtagaaagaggaatagtactaacaactccaggtggaatggcaatgatggggagatttttaatcgttcaacgagagacgaagatgatgaagaggctcttaaatgggcagctcttgaaaaacttccaacgtttgatcgtttgagaaaaggtctcttgtttggatcacaaggtgcatctgctgaaattgatatacatgatattggttttcaagaaagaaacaagttgcttgaaaggcttgtcaaagttgcagatgaggataatgagaagctcctgttgaaactcaagcaaagaattgacagagttgggatagatttgcctgaaatagaagtaagatatgagcatttaactattgaggcagatgcatatgtaggaagtagagctttgcctacatttatcaactttatctctaatttttttgaggatatattgaactctgtccatatcctaccgagtcgaaagaggaaactaactattcttaatgatgtgagtggtatcattaagcctcgcagattgactttgcttttaggacctccaagttccgggaaaactacattattattagctttggccggaaagctcgactctgcccttaaggttactggaaaagtgacctataatggacatgaaatgaatgagtttgtgccgcaaagaacagctgcttatattagccagtatgatttacatattggagaaatgactgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41928" stop="44066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42228" g_stop="42612" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42613" i_stop="43133" i_length="521">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43134" g_stop="43254" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="506" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43255" i_stop="43342" i_length="88">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43343" g_stop="43516" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="680" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43517" i_stop="43658" i_length="142">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43659" g_stop="43766" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="788" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E546066" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42228" e_stop="42612"/>
          <exon e_start="43134" e_stop="43254"/>
          <exon e_start="43343" e_stop="43516"/>
          <exon e_start="43659" e_stop="43766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAATAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAGCTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAGGTAAGTCGATGTATCTTCTGTCATCTTTGATGAACGAAAAATAACTATATAGGCCACACCATTTAACAGCAATGTTCGTTACAGATTCTGCATACATATGTTGTTAGAAGCTTGTGGTCTTAAATATGACTTCTGATCATATCATTTGTATGGCTACAGAAGTTTCTCACCAAAGCTAGTAGAATAAAAAGCTAAGTTTTGTGTTTCTTCTGTAATGAATTAATAAGGATATATTTTTATATAAACTAGAATGGAGCAAACAAAGTGGCACGAATAGTGACGATTTATGTAATCAAACTATCTTGCTTAAAAACTGAGACGTCGTAGTTGTTGTGCTGTTCTTCATCTAAGACTAATTTGTTTTTCATATTTAATTGAGACGGACTTAAATGGAACAACATGGACAATGATGATTCATATTGTCATTAATTACTCCGACTTGGTTAGAATTGAGGCATAGTTATTGTGATGTTGTTGATTATCTATGATAAGTTGTTTGACAATTCTTTTTCTTTTCACAGAGTTGGGATAGATTTGCCAGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTCTAATTTTTTTGAGGTAAAAAGAAAATCTTGATTTCGAATCTTGAACAAAAAGGATGTTTGTAACTAACTTTTTTTTTTAAAAATTTTTTTGGGATTCATAGGATATATTGAACTCTGTCCATATCCTACCGAGTCGAAAGAGGAAACTAACTATTCTTAATGATGTGAGTGGTATCATTAAGCCTCGCAGATTGACTTTGCTTTTAGGACCTCCAAGTTCCGGGAAAACTACATTATTATTAGCTTTGGCCGGAAAGCTCGACTCTGCCCTTAAGGTATCACCATTAGTTCTATGTATCCAAGACTGACAGTTCAAGGATTAGCTAGCTGTCATTTTTGTCGTTCCGACAATTAATATATATTCTTCTTATTATAGACTGTCAATGCATAAAACTCATTTGTTTGTGTGGAAAACAGGTTACTGGAAAAGTGACGTATAATGGACATGAAATGAATGAGTTTGTGCCGCAAAGAACAGCGGCTTATATTAGCCAGTATGATTTACATATTGGAGAAATGACTGTG</genome_strand>
        <mrna_strand>TTTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAACAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAACTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGGATAGATTTGCCTGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTCTAATTTTTTTGAG........................................................................................GATATATTGAACTCTGTCCATATCCTACCGAGTCGAAAGAGGAAACTAACTATTCTTAATGATGTGAGTGGTATCATTAAGCCTCGCAGATTGACTTTGCTTTTAGGACCTCCAAGTTCCGGGAAAACTACATTATTATTAGCTTTGGCCGGAAAGCTCGACTCTGCCCTTAAG..............................................................................................................................................GTTACTGGAAAAGTGACCTATAATGGACATGAAATGAATGAGTTTGTGCCGCAAAGAACAGCTGCTTATATTAGCCAGTATGATTTACATATTGGAGAAATGACTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357155" ref_strand="+" ref_description="SGN-E357155 [cLHT-17-H15]">
      <seq>ttggttcaaaatggagctaactaattcaagaggtactagtttaagagaaaaaataatcaggggaagtagtttgagagggagcttaagtagaaagaggaatagtactaacaactccaggtggaatggcaatgatggggagatttttaatcgttcaacgagagacgaagatgatgaagaggctcttaaatgggcagctcttgaaaaacttccaacgtttgatcgtttgagaaaaggtctcttgtttggatcacaaggtgcatctgctgaaattgatatacatgatattggttttcaagaaagaaacaagttgcttgaaaggcttgtcaaagttgcagatgaggataatgagaagctcctgttgaaactcaagcgaagaattgacagagttgggatagatttgcctgaaatagaagttagatatgagcatttaactattgaggcagatgcatatgtaggaagttgagctttgcctacatttatcaactttatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41929" stop="43541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42229" g_stop="42612" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42613" i_stop="43133" i_length="521">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43134" g_stop="43241" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="492" r_length="108" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E357155" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42229" e_stop="42612"/>
          <exon e_start="43134" e_stop="43241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAATAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAGCTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAGGTAAGTCGATGTATCTTCTGTCATCTTTGATGAACGAAAAATAACTATATAGGCCACACCATTTAACAGCAATGTTCGTTACAGATTCTGCATACATATGTTGTTAGAAGCTTGTGGTCTTAAATATGACTTCTGATCATATCATTTGTATGGCTACAGAAGTTTCTCACCAAAGCTAGTAGAATAAAAAGCTAAGTTTTGTGTTTCTTCTGTAATGAATTAATAAGGATATATTTTTATATAAACTAGAATGGAGCAAACAAAGTGGCACGAATAGTGACGATTTATGTAATCAAACTATCTTGCTTAAAAACTGAGACGTCGTAGTTGTTGTGCTGTTCTTCATCTAAGACTAATTTGTTTTTCATATTTAATTGAGACGGACTTAAATGGAACAACATGGACAATGATGATTCATATTGTCATTAATTACTCCGACTTGGTTAGAATTGAGGCATAGTTATTGTGATGTTGTTGATTATCTATGATAAGTTGTTTGACAATTCTTTTTCTTTTCACAGAGTTGGGATAGATTTGCCAGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTC</genome_strand>
        <mrna_strand>TTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAACAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAACTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCGAAGAATTGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGGATAGATTTGCCTGAAATAGAAGTTAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTTGAGCTTTGCCTACATTTATCAACTTTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339813" ref_strand="+" ref_description="SGN-E339813 [cTOE-16-P20]">
      <seq>tatcaatttgtaggacccaaaattgtgaacaaacaaaactgcctatatgacagcaccagaacgaccgcaaccagaagtgccatcaatcgacctcagggagtactctgcatcatgacagcaccaggacgaccacaaccagaagtgccatcaatcgacctcgaggagtactctgcatcaaagactctgattccttttgaccgaccagtccctcttcttcgaggtcccatcaaggctggcccacaagaagaaacagttgggcaattcatcctcgcatttaaagaccctatctcctgggcctctgcatacaaggcttgtgaatctcaagtcactcaacaatgtgaatctggagctaggattggttgctctatcgcagcctcagacaaatgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="49693" stop="48709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49604" g_stop="49604" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49603" i_stop="49466" i_length="138">
            <donor d_prob="0.507" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49465" g_stop="49454" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="13" r_length="12" r_score="0.583"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49453" i_stop="49387" i_length="67">
            <donor d_prob="0.808" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49386" g_stop="49009" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="391" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E339813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49604" e_stop="49604"/>
          <exon e_start="49465" e_stop="49454"/>
          <exon e_start="49386" e_stop="49009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTCAAAAACAACTTCTTTATCTTAAATGATTTATGTACAATTGTTTTCCTTACATTTTATCAAAAACATACCCAACAATCTATACAGAATACCAAAAGTTTGAAAAGTTCCTTATCCAAATGTCCTTGTTGCAGATGCATTTACTGGTGATGATATCAATTCAGCCTTGAGAAAACTACTTTGAGTATCCTGATATTGGTTTCGTCTCTTCAGGACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAA</genome_strand>
        <mrna_strand>T..........................................................................................................................................ATCAATTTGTAG...................................................................GACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312010" ref_strand="+" ref_description="SGN-E312010 [cTOA-16-F8]">
      <seq>aactctttctctctatcaatttgtagatgcatttactggtgatgatatcaattcagccttgagaaaactactttgagtatcctgatattggtttcgtctcttcaggacccaaaattgtgaacaaacaaaactgcctatatgacagcaccagaacgaccgcaaccagaagtgccatcaatcgacctcagggagtactctgcatcatgacagcaccaggacgaccacaaccagaagtgccatcaatcgacctcgaggagtactctgcatcaaagactctgattccttttgaccgaccagtccctcttcttcgaggtcccatcaaggctggcccacaagaagaaacagttgggcaattcatcctcgcatttaaagaccctatctcctgggcctctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51277" stop="48797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50977" g_stop="50952" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50951" i_stop="49466" i_length="1486">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49465" g_stop="49097" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="395" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E312010" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50977" e_stop="50952"/>
          <exon e_start="49465" e_stop="49097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTTCTCTCTATCAATTTGTAGGTATGTTTATGGTTTGTTCGTTCATTTTTTAAAAAATATATTCTTCAACTTTTTATTTTTAAACTTAATTGGAATGGAATGTTCTGTTTGGATAGTGTTCTTTTGGTAAAATATATCTGTTTGATTGTTCACTCTATGTGCAAGTTTACATGTTTCTCGATTGAGATCTTTAAAGGAAATGAAGCAAACACTATTCCAATTCACAGTAAACAAGATTCATTGATTGTATTATTACTCTAATAAACTGAAATAAGGAATATAAGCATTACTATTATTTATTGATTGGAAGGATACAAGGATAAAGAAATTAGATTAGAAAGAAGATGAAAATCCCAAAACCTTTGTCACGTGCTTCCGTACTCAACCTGGATCCCAAGTAAGTCCCTAGTTCGAATAACTGGTCAATAAGAATTATGTGAGTTGTCCATGTCATTTATATACAAAAATTAAACTTGGAAAGGGATTTCTGAGATCCCCTGATGAAGATATCAGCGATGGGAATTCGGCAACAATTTTGTTGGGCGTGCAAACAAAGTGGTAGCTTAAAAAGACTGGAAAGCTACATATGAGGTGTGTGAGGCCTTTTGAAAAAAAACCATGTGGATTTGGCCAAAGCGGACAATATTACACCATGTTAAAAGCTTCATTCAGTTGATTTAGCCAACAAAACTTAAGGTGGCTATGGTTTTGATCTTCTTCCCTAACTGCATCTCCTTGACTCGTACTGCCAACACAGCTGCTTTTCCTTTTAGCTACATATACCACTCTTCATCATCTTTCCCTGCCTCACTGAATGTTGATCTGGTTGTTTTGCTTCTGTTTGTTTCTAAACTGAAGTCCTCTGAGTGAAGCGCTCAACAGTAATACATACCTCTATGCATAGAAATGATATAACATTCTGAAATGATTTAAAGATTACATGAAAATGCTTTTAATGCTTATTGTTTTTATTTATTGATCTTATGAAATGTAACACTTATCGTATATCATGAATTTTATGTATCCCTTAAAGTATCGTTCCAACCTTATCGAAAGGAGACAGCGATACTTAGGGGGGTACAATTTTTTATATTGTACCCAGCCCCTTCTTCCCGCGGGCATATACATATTATCAGTTTATTCAGTCCCCTGCAGTTTATGTCACTTGGCATGATTCCATGAAGTATGAGCCCCTTGTGTTGGGAGAACTTCTAGATACTCGTGATATAGACACTTTGTGGTGTTTGAATTTGGGATGTTTTCCAATGAAGTTTTTTCCAAAACAACTCTCATGTCTATTTCAAAAACCAAACTTGTTATTGGAAGACAATCCAAAAACGTTGATGGAGTACCAGTAGCAAAAAATTCTGTTTCTCAAAAACAACTTCTTTATCTTAAATGATTTATGTACAATTGTTTTCCTTACATTTTATCAAAAACATACCCAACAATCTATACAGAATACCAAAAGTTTGAAAAGTTCCTTATCCAAATGTCCTTGTTGCAGATGCATTTACTGGTGATGATATCAATTCAGCCTTGAGAAAACTACTTTGAGTATCCTGATATTGGTTTCGTCTCTTCAGGACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCA</genome_strand>
        <mrna_strand>AACTCTTTCTCTCTATCAATTTGTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATTTACTGGTGATGATATCAATTCAGCCTTGAGAAAACTACTTTGAGTATCCTGATATTGGTTTCGTCTCTTCAGGACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738231" ref_strand="+" ref_description="SGN-E738231 [LC12DE01]">
      <seq>ctcttcctcccgccactgtacacactgcacgttcgccgccgccgctgcgacctactacttcatcttttcagatatcccaatgccaagcaaacggaaatcttctccggctacaaagccagagtcttcatccggcagcaggaagtcgaagagacttgtagttgaaagaccagatccagtagtagctcaaccatctgattccgattttgaaccggaacctgttttatcatcaaagaagaaatccacgaggcgagctgcagtaaaggtggaacctttggtggattctgtagctgggagtgattttgtggaagaggaagaagtagatggaatggagctagggagtctgaagaagagcttgtcgatttcaccttccaaaaggaagcctaagagggctgagaaagttaaagatgaagagtgtgtacttgccggtgaccctgttccggatgcagaagctagactgaagtggcctcatcgctataataaagggaaagaaaatggtaccaagagcttaaatggtcaagatgatccggaccagttaattcaagctaagtgccattttagtcgagcagatgttgatggtcagatatattatctcgaggatgatgcacatgtgaaggctgctgatggtgaggacgattacatttgcaagattgttgaattctttgaagcagttgacggagtgcagtattttacagctcagtggttttacagagctaaggatactgttattaaaagccatgatcagttcattgacaaaaaacgtgtattcctttctgaaatcaaggatgacaatcctcttgattgccttgtgaccaaactaaagattgttcctgtgcccctcaatgcaacttcacagttcaagggaaaatgtaaaatcaaattgtgatttctactatgacatgaagtacttgcttccatactcttccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51828" stop="55300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52128" g_stop="52373" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52374" i_stop="52538" i_length="165">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52539" g_stop="52767" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="475" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52768" i_stop="53038" i_length="271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53039" g_stop="53076" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="513" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53077" i_stop="53169" i_length="93">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53170" g_stop="53269" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="613" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53270" i_stop="54525" i_length="1256">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54526" g_stop="54633" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="721" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54634" i_stop="54716" i_length="83">
            <donor d_prob="0.793" d_score="1.00"/>
            <acceptor a_prob="0.487" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54717" g_stop="54836" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="841" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54837" i_stop="54916" i_length="80">
            <donor d_prob="0.706" d_score="0.94"/>
            <acceptor a_prob="0.820" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54917" g_stop="55000" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="926" r_length="85" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E738231" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52128" e_stop="52373"/>
          <exon e_start="52539" e_stop="52767"/>
          <exon e_start="53039" e_stop="53076"/>
          <exon e_start="53170" e_stop="53269"/>
          <exon e_start="54526" e_stop="54633"/>
          <exon e_start="54717" e_stop="54836"/>
          <exon e_start="54917" e_stop="55000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCCTCCCGCCACTGTACACACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTATGTAAGAAAGATTCTTACTTTGAGATTTTAAATATTCTTTACTTTGAAATATTTGCAATTTAGTTGCAAAAACGTTTAATATAATTTTAAATGGCATGAAATTATGCTTTCTATATGGTATATCTGATATTCTGCTGCCAAACTTGATGCTATCTGAAATAAGAAGCATAATTTAAGGGACTGTTGTTGATAGTCTATCAATCCGTTTTTATTTGGCATCATTTGTCTTTATTCAATATTTTACTTACATGGCTATTTCTTTTTGTAAACAGAATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGGGTAAGTCTTGAACCACTTTCCACTCCAACATCATTTTTGTTATATATAAATTAGTTCAAGGATTTATGTGTTTTTGGTACTTTCATGTTACAGTCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAGGTAAAGTGTAAATTAACCATAAACTTACATTATTCAGGTCCTTTCATTGTGTTGATATACTCTTTACAATAGGTTTGATAGGAATGTGGGTACTTTTTATGTAGTCTTAATTATTAACTTAATGTTAAATTGTATCTGGGCCTTATTTGTGGCAAGTGGAGCTTTTTACAGATAATGGGTGGAGATGATACTTGGGGATCTAGTATGTTTGCTTACTGTTAAGGAATGAATATAGTCATATTCCTTGTAATATATGTGGACAACTTAATTCTAGGGGTTCATAGCAAATCTGTAGGACTTTCCTTTTAATTACTTCCATAGTTAGAAAGATCTATATGTATATAATCGTGTCACTTCATGTAATTTTATGTCAGCTTTTCTTCTTATTTGATATATACATGGTATTAGAGCCAGATTTATCCTCCTTGGATTTGTGGTTCATACTCTAGTTGGACCTTTGTGTAAATAGGTGTTAGCGTCACCTTGGTTGGTGAATTGCTTATACAGACTTGTGCAATTCTCCCTCTTGAGCTAGTTTTTGGGTTTGTGTTAGCATGGATGCCCTATCTTTACATCTACTTTGATATGTGTTTTCTTAGATAGCATTAAAAAAAATTCTGTTTCAATTTGTTTGATTGGTTTTGACATGACACAAAGTTAATGTAAGTAAATAAATACTTTTTAATGTTGTGGTTTTAAATTTAAGATATGTATAAAGTACTTAAAAGTCCTTTAGTATTGGGTTTGAACATCCCAGGATTAAAGTTAAAATTAAAAGAGTTGCCGTTGTTTGTGTTGACATTGGACTCTCAACTTACCATGAAACTGCTTGTATAGATTTGGTAGTTTTCTCCCTATGACTTGGCTTTTGGGGTTATTTAAACACAAGGTTCACACCTTTTATGGTATCAGAGCTAGATCTGTCACTGTTTAGGTACCTATGGTGATGTTGTCCACAATCTAATTGGTGGTCTTGGTGAGTTTAGGTGTGTGGTGGTTGTGGAGGTTTTAGAGTTCGTTAGAGTCCTACACTTATTGGGGAATGGATTGATGGTCTCCTAGTTTATATTTGAGCTATACTCCCTCATGAGCTAGTTTTGGTTTGAGTTAGGCCCAAGGTTCATATTTTACAGTTGGTTGAAATTTTTCTCCATTTATCATAGCCCAATTACTGTAAGTTGAGGTTTGTTATTTTACTTATGGCCATAAAATGTATCCATGTATTGACTAATTTTTATTATCTATCATGTAACTAGGCTGCTGATGGTGAGGACGATTACATTTGCAAGATTGTTGAATTCTTTGAAGCAGTTGACGGAGTGCAGTATTTTACAGCTCAGTGGTTTTACAGAGCTAAGGATACTGTAAGAAATACCAACTCTATAATCTGAAAGGTTCTTGCCCCCTGTGATGCTATCATGGTCTCACATCTCTTTTTCCCTGCTAGGTTATTAAAAGCCATGATCAGTTCATTGACAAAAAACGTGTATTCCTTTCTGAAATCAAGGATGACAATCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCTCAAATGTATGTCTTTGTTACCTTGCTGGTGAGTACTGTGAATTGGTATTGAGTGGTTGAACTAAAAATGCAGAATATTGCTGCAGGCAACTTCACAGTTCAA-GGAAAATGTAAAATCAAATTGTGATTTCTACTATGACATGAAGTACTTGCTTCCATACTCTTCCTTC</genome_strand>
        <mrna_strand>CTCTTCCTCCCGCCACTGTACACACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGCAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAG.....................................................................................................................................................................GCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTAT...............................................................................................................................................................................................................................................................................AATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGG.............................................................................................TCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGATGGTGAGGACGATTACATTTGCAAGATTGTTGAATTCTTTGAAGCAGTTGACGGAGTGCAGTATTTTACAGCTCAGTGGTTTTACAGAGCTAAGGATACT...................................................................................GTTATTAAAAGCCATGATCAGTTCATTGACAAAAAACGTGTATTCCTTTCTGAAATCAAGGATGACAATCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCCTCAAT................................................................................GCAACTTCACAGTTCAAGGGAAAATGTAAAATCAAATTGTGATTTCTACTATGACATGAAGTACTTGCTTCCATACTCTTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739525" ref_strand="+" ref_description="SGN-E739525 [LC17DC01]">
      <seq>cgttaactgcacgttcgccgccgccgctgcgacctactacttcatcttttcagatatcccaatgccaagcaaacggaaatcttctccggctacaaagccagagtcttcatccggcagcaggaagtcgaagagacttgtagttgaaagaccagatccagtagtagctcaaccatctgattccgattttgaaccggaacctgttttatcatcaaagaagaaatccacgagacgaacaacagctgaaagttcagtggtagcttgtcaatcggaaagcaataacaagaagttgaagaagccaactgttgaaaaggcagaatctggtgtagcttcaccagctgatagagatttcgtatctgagtctgattcggagacgccgagcaagaaatccacgaggcgagctgcagtaaaggtggaacctttggtggattctgtagctgggagtgattttgtggaagaggaagaagtagatggaatggagctagggagtctgaagaagagcttgtcgatttcaccttccaaaaggaagcctaagagggctgagaaagttaaagatgaagagtgtgtacttgccggtgaccctgttccggatgcagaagctagactgaagtggcctcatcgctataataaagggaaagaaaatggtaccaagagcttaaatggtcaagatgatccggaccagttaattcaagctaagtgccattttagtcgagcagatgttgatggtcagatatattatctcgaggatgatgcacatgtgaaggctgctgatggtgaggacgattacattttgcagattgttgaattctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51851" stop="54875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52767" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52768" i_stop="53038" i_length="271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53039" g_stop="53076" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="660" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53077" i_stop="53169" i_length="93">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53170" g_stop="53269" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="760" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53270" i_stop="54525" i_length="1256">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54526" g_stop="54575" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="810" r_length="50" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E739525" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52767"/>
          <exon e_start="53039" e_stop="53076"/>
          <exon e_start="53170" e_stop="53269"/>
          <exon e_start="54526" e_stop="54575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACACACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTATGTAAGAAAGATTCTTACTTTGAGATTTTAAATATTCTTTACTTTGAAATATTTGCAATTTAGTTGCAAAAACGTTTAATATAATTTTAAATGGCATGAAATTATGCTTTCTATATGGTATATCTGATATTCTGCTGCCAAACTTGATGCTATCTGAAATAAGAAGCATAATTTAAGGGACTGTTGTTGATAGTCTATCAATCCGTTTTTATTTGGCATCATTTGTCTTTATTCAATATTTTACTTACATGGCTATTTCTTTTTGTAAACAGAATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGGGTAAGTCTTGAACCACTTTCCACTCCAACATCATTTTTGTTATATATAAATTAGTTCAAGGATTTATGTGTTTTTGGTACTTTCATGTTACAGTCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAGGTAAAGTGTAAATTAACCATAAACTTACATTATTCAGGTCCTTTCATTGTGTTGATATACTCTTTACAATAGGTTTGATAGGAATGTGGGTACTTTTTATGTAGTCTTAATTATTAACTTAATGTTAAATTGTATCTGGGCCTTATTTGTGGCAAGTGGAGCTTTTTACAGATAATGGGTGGAGATGATACTTGGGGATCTAGTATGTTTGCTTACTGTTAAGGAATGAATATAGTCATATTCCTTGTAATATATGTGGACAACTTAATTCTAGGGGTTCATAGCAAATCTGTAGGACTTTCCTTTTAATTACTTCCATAGTTAGAAAGATCTATATGTATATAATCGTGTCACTTCATGTAATTTTATGTCAGCTTTTCTTCTTATTTGATATATACATGGTATTAGAGCCAGATTTATCCTCCTTGGATTTGTGGTTCATACTCTAGTTGGACCTTTGTGTAAATAGGTGTTAGCGTCACCTTGGTTGGTGAATTGCTTATACAGACTTGTGCAATTCTCCCTCTTGAGCTAGTTTTTGGGTTTGTGTTAGCATGGATGCCCTATCTTTACATCTACTTTGATATGTGTTTTCTTAGATAGCATTAAAAAAAATTCTGTTTCAATTTGTTTGATTGGTTTTGACATGACACAAAGTTAATGTAAGTAAATAAATACTTTTTAATGTTGTGGTTTTAAATTTAAGATATGTATAAAGTACTTAAAAGTCCTTTAGTATTGGGTTTGAACATCCCAGGATTAAAGTTAAAATTAAAAGAGTTGCCGTTGTTTGTGTTGACATTGGACTCTCAACTTACCATGAAACTGCTTGTATAGATTTGGTAGTTTTCTCCCTATGACTTGGCTTTTGGGGTTATTTAAACACAAGGTTCACACCTTTTATGGTATCAGAGCTAGATCTGTCACTGTTTAGGTACCTATGGTGATGTTGTCCACAATCTAATTGGTGGTCTTGGTGAGTTTAGGTGTGTGGTGGTTGTGGAGGTTTTAGAGTTCGTTAGAGTCCTACACTTATTGGGGAATGGATTGATGGTCTCCTAGTTTATATTTGAGCTATACTCCCTCATGAGCTAGTTTTGGTTTGAGTTAGGCCCAAGGTTCATATTTTACAGTTGGTTGAAATTTTTCTCCATTTATCATAGCCCAATTACTGTAAGTTGAGGTTTGTTATTTTACTTATGGCCATAAAATGTATCCATGTATTGACTAATTTTTATTATCTATCATGTAACTAGGCTGCTGATGGTGAGGACGATTACATTTGCAAGATTGTTGAATTCTTTGA</genome_strand>
        <mrna_strand>CGT-TA-ACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGCAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTAT...............................................................................................................................................................................................................................................................................AATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGG.............................................................................................TCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGATGGTGAGGACGATTACATTTTGCAGATTGTTGAATTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379697" ref_strand="+" ref_description="SGN-E379697 [TUS-1-M14]">
      <seq>ccatttggagaatatgactaggagtgaaagcatatcagctaacacagacgtggatttaacttcaaacaagtatgcagcttgggcagtggaagttgctgagaggactgcgtccatgattgccaggtggcaggatgttggtttcacacatggagtcatgaacactgataatatgagcgtgttaggactcactattgactatggtccctttggctttttagattcttttgatcccagttacacaccaaataccactgatcttcctggcagaagatattgttttgcaaatcagccagatgtaggtttatggaatattgcgcagtttacctctgctctatctactgccgagttgcttagtgataaagaggcagattatgctatggaaagatatggtaacaaattcatggatgattatcaagatatcatgaccaggaaacttggtctgacaaagtacaataaaaagttgattggtgaactactcaagaatatggtctccgataaagttgattacacaaatttctttcgatctctatcnaaatnaaagctgatcctgcaattccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="56906" stop="58074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57106" g_stop="57489" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57490" i_stop="57598" i_length="109">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57599" g_stop="57774" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="559" r_length="175" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E379697" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57106" e_stop="57489"/>
          <exon e_start="57599" e_stop="57774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGACTGCGTCCATGATTGCCAGGTGGCAGGATGTTGGTTTCACACATGGAGTCATGAACACTGATAATATGAGCGTGTTAGGACTCACTATTGACTATGGTCCCTTTGGCTTTTTAGATTCTTTTGATCCCAGTTACACACCAAATACCACTGATCTTCCTGGCAGAAGATATTGTTTTGCAAATCAGCCAGATGTAGGTTTATGGAATATTGCGCAGTTTACCTCTGCTCTATCTACTGCCGAGTTGCTTAGTGATAAAGAGGCAGATTATGCTATGGAAAGGTATCTTTAGATACTAGCATTTGGCCATTTGCTCAAATGTTATGTCTCTGTGATTGCTCGATTATTTCTCTTTTGCTGTTGTTGATGTTTATCTGTTGACTTTTTTTAGATATGGTAACAAATTCATGGATGATTATCAAGATATCATGACCAGGAAACTTGGTCTGACAAAGTACAATAAAAAGTTGATTGGTGAACTACTCAAGAATATGGTCTCCGATAAAGTTGATTACACAAATTTCTTTCGATCTCTATCAAACATCAAAGCTGATCCTGCAATTCCAG</genome_strand>
        <mrna_strand>CCATTTGGAGAATATGACTAGGAGTGAAAGCATATCAGCTAACACAGACGTGGATTTAACTTCAAACAAGTATGCAGCTTGGGCAGTGGAAGTTGCTGAGAGGACTGCGTCCATGATTGCCAGGTGGCAGGATGTTGGTTTCACACATGGAGTCATGAACACTGATAATATGAGCGTGTTAGGACTCACTATTGACTATGGTCCCTTTGGCTTTTTAGATTCTTTTGATCCCAGTTACACACCAAATACCACTGATCTTCCTGGCAGAAGATATTGTTTTGCAAATCAGCCAGATGTAGGTTTATGGAATATTGCGCAGTTTACCTCTGCTCTATCTACTGCCGAGTTGCTTAGTGATAAAGAGGCAGATTATGCTATGGAAAG.............................................................................................................ATATGGTAACAAATTCATGGATGATTATCAAGATATCATGACCAGGAAACTTGGTCTGACAAAGTACAATAAAAAGTTGATTGGTGAACTACTCAAGAATATGGTCTCCGATAAAGTTGATTACACAAATTTCTTTCGATCTCTATCNAA-ATNAAAGCTGATCCTGCAATTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200048" ref_strand="+" ref_description="SGN-E200048 [cLEC-8-G14]">
      <seq>ccatttggagaatatgactaggagtgaaagcatatcagctaacacagacgtggatttaacttcaaacaagtatgcagcttgggcagtggaagttgctgagaggactgcgtccatgattgccaggtggcaggatgttggtttcacacatggagtcatgaacactgataatatgagcgtgttaggactcactattgactatggtccctttggctttttagattcttttgatcccagttacacaccaaataccactgatcttcctggcagaagatattgttttgcaaatcagccagatgtaggtttatggaatattgcgcagtttacctctgctctatctactgccgagttgcttagtgataaagaggcagattatgctatggaaagatatggtaacaaattcatggatgattatcaagatatcatgaccaggaaacttggtctgacaaagtacaataaaaagttgattggtgaactactcaagaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="56906" stop="58001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57106" g_stop="57489" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57490" i_stop="57598" i_length="109">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57599" g_stop="57701" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="487" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E200048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57106" e_stop="57489"/>
          <exon e_start="57599" e_stop="57701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGACTGCGTCCATGATTGCCAGGTGGCAGGATGTTGGTTTCACACATGGAGTCATGAACACTGATAATATGAGCGTGTTAGGACTCACTATTGACTATGGTCCCTTTGGCTTTTTAGATTCTTTTGATCCCAGTTACACACCAAATACCACTGATCTTCCTGGCAGAAGATATTGTTTTGCAAATCAGCCAGATGTAGGTTTATGGAATATTGCGCAGTTTACCTCTGCTCTATCTACTGCCGAGTTGCTTAGTGATAAAGAGGCAGATTATGCTATGGAAAGGTATCTTTAGATACTAGCATTTGGCCATTTGCTCAAATGTTATGTCTCTGTGATTGCTCGATTATTTCTCTTTTGCTGTTGTTGATGTTTATCTGTTGACTTTTTTTAGATATGGTAACAAATTCATGGATGATTATCAAGATATCATGACCAGGAAACTTGGTCTGACAAAGTACAATAAAAAGTTGATTGGTGAACTACTCAAGAATATG</genome_strand>
        <mrna_strand>CCATTTGGAGAATATGACTAGGAGTGAAAGCATATCAGCTAACACAGACGTGGATTTAACTTCAAACAAGTATGCAGCTTGGGCAGTGGAAGTTGCTGAGAGGACTGCGTCCATGATTGCCAGGTGGCAGGATGTTGGTTTCACACATGGAGTCATGAACACTGATAATATGAGCGTGTTAGGACTCACTATTGACTATGGTCCCTTTGGCTTTTTAGATTCTTTTGATCCCAGTTACACACCAAATACCACTGATCTTCCTGGCAGAAGATATTGTTTTGCAAATCAGCCAGATGTAGGTTTATGGAATATTGCGCAGTTTACCTCTGCTCTATCTACTGCCGAGTTGCTTAGTGATAAAGAGGCAGATTATGCTATGGAAAG.............................................................................................................ATATGGTAACAAATTCATGGATGATTATCAAGATATCATGACCAGGAAACTTGGTCTGACAAAGTACAATAAAAAGTTGATTGGTGAACTACTCAAGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379123" ref_strand="+" ref_description="SGN-E379123 [TUS-1-M14](-)">
      <seq>gataaagttgattacacaaatttctttcgatctctatcaaacatcaaagctgatcctgcaattccagaggaccaattattgattcctctcaaagatgttctcttagatattggtatggaacgcagggaagcctggactaactggataaagtcatatatacaagagctctccacaactggtgtattagatgaggagaggaaagtttcaatgaattttgtaaatccaaagtacatcctcagaaactatctatgccagaatgccattgatgcagcagaacaaggcgattttgaggaggttcggcagttattgaaggttatgcaatgtccatttgatgaacagcctggtatggagaaatatgcacgcttgcctccagcttgggctcatcgtccgggtgtatgcatgctttcttgttcctcataaggtttccgggtgtatgcttatgctttcttgttcctcataatatctccactatgtaataccagagtttcacttgtatatatataactagtctcccggcacgtgcgttgcacgtgtattccaaataaaaatcagtaaaaaaaataaatgaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57408" stop="59936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57708" g_stop="57872" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57873" i_stop="59227" i_length="1355">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59228" g_stop="59636" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="574" r_length="409" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E379123" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57708" e_stop="57872"/>
          <exon e_start="59228" e_stop="59636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAGTTGATTACACAAATTTCTTTCGATCTCTATCAAACATCAAAGCTGATCCTGCAATTCCAGAGGACCAATTATTGATTCCTCTCAAAGATGTTCTCTTAGATATTGGTATGGAACGCAGGGAAGCCTGGACTAACTGGATAAAGTCATATATACAAGAGGTATGTGACAATGAATTTCCTTATTCAAATAATACAATGCCGCCGCCTCAATCCCAGGGGTCGGCTATATTAATCCTCACTGTCTATGTCTGGTCCATTTATGCTCATTTCAGTCCAATATTATTCAATTTTCCCAAATAGAATGAAGCATATAATGTGTTTAGAATTAGTTTAGCTACTTGAGCTCAACATTGCAGTGAGTAGGGTAATATAAGGTCGGGTAACATAAGGTCCTTTGAAATCGGACTTTGTCCTGGAACCACCCGTATTTGAATAGTTATTCACTTCAATAATAAGTTGTTATGGTTTTGTTCTTTAAACTGTTGTCAAATGTTCTTTTAGGATAGCTGGTTGCTCACCTTGTTTGTTCCTTAGATACCAGTAATGGTAGGTGGTAATGGATAGCAGTTTCCATCCATGGGAAGATGTTCAATTTCATTCCTCCTCTGCCTTGTTCTTCAAGGTTTCCATCTTTCCAGTCTCTTCTACCCTGGGCCCAAAAAAGCAAGAAGAAAGTCATAAAGGAAATAACAGATAGTAGACGTAAGCAATGGGTGAGAAGTAGTTGTGACAACGTTTTTGTATGGCATTGAGTGTGACTCTTATATTCTCATCAATTGAAATGGCTTGTCATGTTAGCTTCCTGCTTCTTCCTCTTTTATGTCTAACACCTTGTGCTCAGATTGTGCTGTGGAAGAGACATCCTTCTACAAGAGGTGTCAGATGACTTGTATGTAGGTAATAGTGTGGTCACCCATTAGGTGGGAGAGGGAGGAAGCTTGCCCCATATCCTTTTTCTCCTTATTAGTAGTAATATTTAGTAATCACATAGTTTCTTATTCTTCATGTGTGTCTACTATTTGTTGCTTCGTTTTGCTTTATATCTTGATATTTGTTGTCATTTTTTTCTGCTTGCAACACTTCCATGAATAACTTCCCTTTTAAGCCGAGGATCTATCGGAAACCTCTCCACCCCACAGAGGTAGGGTAAGGTCTGCATACATCTCACTCTCTCCAGACCCCACTTGTGGGATTACATTGAGTATGTTGTGTTGTATGTAAGTAGTGTTTTTTCTTGAAAAAGAAAGTATCGATATATAAGGCTGATACAACTTGAAAAGCAATGTCAGAGTAAACAACAATTTGAAGCAAAGCCTTGTAACTTACGCAACTTAGACGGTAACTCATTTGCAAATTGAGTTGTTGAATTGTGGTAATAGACAGACAATGCTTGCGTAAAATCCTGCATACACCATTGTTTTATGCGGTTGTTTTTGTGGACTCTTTTCTGGAAATTATCAAGTTCCATTCTTGTATGTGAGGTACTCATGGTGTCACTTTTCTACCTCTTGCAGCTCTCCACAACTGGTGTATTAGATGAGGAGAGGAAAGTTTCAATGAATTTTGTAAATCCAAAGTACATCCTCAGAAACTATCTATGCCAGAATGCCATTGATGCAGCAGAACAAGGCGATTTTGAGGAGGTTCGGCAGTTATTGAAGGTTATGCAATGTCCATTTGATGAACAGCCTGGTATGGAGAAATATGCACGCTTGCCTCCAGCTTGGGCTCATCGTCCGGGTGTATGCATGCTTTCTTGTTCCTCATAAGGTTTCCGGGTGTATGCTTATGCTTTCTTGTTCCTCATAATATCTCCACTATGTAATACCAGAGTTTCACTTGTATATATATAACTAGTCTCCCGGCACGTGCGTTGCACGTGTATTCCAAATAAAAATCAATAAAAAAAATAAATGAAAAAGT</genome_strand>
        <mrna_strand>GATAAAGTTGATTACACAAATTTCTTTCGATCTCTATCAAACATCAAAGCTGATCCTGCAATTCCAGAGGACCAATTATTGATTCCTCTCAAAGATGTTCTCTTAGATATTGGTATGGAACGCAGGGAAGCCTGGACTAACTGGATAAAGTCATATATACAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCCACAACTGGTGTATTAGATGAGGAGAGGAAAGTTTCAATGAATTTTGTAAATCCAAAGTACATCCTCAGAAACTATCTATGCCAGAATGCCATTGATGCAGCAGAACAAGGCGATTTTGAGGAGGTTCGGCAGTTATTGAAGGTTATGCAATGTCCATTTGATGAACAGCCTGGTATGGAGAAATATGCACGCTTGCCTCCAGCTTGGGCTCATCGTCCGGGTGTATGCATGCTTTCTTGTTCCTCATAAGGTTTCCGGGTGTATGCTTATGCTTTCTTGTTCCTCATAATATCTCCACTATGTAATACCAGAGTTTCACTTGTATATATATAACTAGTCTCCCGGCACGTGCGTTGCACGTGTATTCCAAATAAAAATCAGTAAAAAAAATAAATGAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690375" ref_strand="+" ref_description="SGN-E690375 [LH_Ea03F13]">
      <seq>cgttgcgtacagtattttacagagaaagagctgctggaatgtattcttccctcccctatgcctttggacaaactttcattgaaataccatatgtctttgtgcaagctgttacctatgctgttatcatctatgctatgatcggatttgaatggacagtgagcaagttcttttggtacttgtttatcatgtatttcactttcttgtacttcaccttctatggtatgatgagcgttgccgtttccccaaatcaaaatattgcgcaaattgtctctctcttcggctattcaatgtggaatcttttctcaggattcatgattccgcgacctagtatgcccatatggtggagatggtactattgggctgatcctgttgcctggacattgtatggtttggttgtatcgcaattcggagacctccaagataaaattactgatatagatgagacatccaaacaattcttgaggcgttactttgggttcaagcatgattttcttggagtagttgcagctgtgactgttgcatatgctgttgtttttgccttcacatttggtttggccattaagtttttcaacttccagaaaagatagaagagcttacctgctgaagatggaacattcaagaaatgcttataaaaataatgtattcaggttaccacttgaacaagtatatatatgttctgtttgttttgtatcgcactactatgcagtgaaatgattttgtaagtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="62916" stop="61439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62622" g_stop="62550" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62549" i_stop="62480" i_length="70">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62479" g_stop="62225" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="326" r_length="255" r_score="0.898"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62224" i_stop="62150" i_length="75">
            <donor d_prob="0.991" d_score="0.86"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62149" g_stop="61752" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="716" r_length="390" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="728" polyA_stop="737"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E690375" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62622" e_stop="62550"/>
          <exon e_start="62479" e_stop="62225"/>
          <exon e_start="62149" e_stop="61752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGAGCGTACAGTATATTACAGAGAAAGAGCTGCTGGAATGTATTCTGCCATCCCTTACGCCTTTGGACAAGTAAGCATATGATTTAACTTCTTACAAGCCTATCTCCGGTTTAAAAAGTCTAAATAACTCTAATCTGCAGACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTTCTTATGGTGTTATCGTCTATGCTATGATTGGATTTGAATGGACTGTGACCAAGTTCTTTTGGTACTTGTTTATAATGTTCTTCACTCTCTTGTACTTCACCTTCTATGGAATGATGAGTGTTGCCATTACCCCAAATCAACATGTCGCGCAAATTGTCTCTGTCTCCGGATATGGAATGTGGAATCTTTTCTCAGGATTCATTGTTCCACGACCTGTAAGTTCTTGAAACATTTGCATTTTGTACCTTCTTCACATGAAAATGATGACATGTTTTTTCTTTGAAAAATAGAGCATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGCATCACAATTCGGAGACCTCCAAAACAAAATTACTGATAGTGATGAGACAGCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTGTTGGAGTAGCTGCAGTGGTGACTGTTGCATATACTCTTGTTTTTGCCTTCACATTTGCTTTGGCTATTAAGGTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAACATCTTCATGAGGAAAATTCAAGAAATGCTTATAGAACTAATGTATTCAGGTTACCACTTGAAGATGTATATATATGATCTGTTTGTTTTGTATCACATTACTCTGCAATGAACTGATT</genome_strand>
        <mrna_strand>CGTT--GCGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAA......................................................................ACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAGTTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTACTTCACCTTCTATGGTATGATGAGCGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCT...........................................................................AGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTG-A-A----GAT--GGAACATTCAAGAAATGCTTATAAAAATAATGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694215" ref_strand="+" ref_description="SGN-E694215 [LH_Ea03F13](-)">
      <seq>agcgtacagtattttacagagaaagagctgctggaatgtattcttccctcccctatgcctttggacaaactttcattgaaataccatatgtctttgtgcaagctgttacctatgctgttatcatctatgctatgatcggatttgaatggacagtgagcaagttcttttggtacttgtttatcatgtatttcactttcttgtacttcaccttctatggtatgatgagcgttgccgtttccccaaatcaaaatattgcgcaaattgtctctctcttcggctattcaatgtggaatcttttctcaggattcatgattccgcgacctagtatgcccatatggtggagatggtactattgggctgatcctgttgcctggacattgtatggtttggttgtatcgcaattcggagacctccaagataaaattactgatatagatgagacatccaaacaattcttgaggcgttactttgggttcaagcatgattttcttggagtagttgcagctgtgactgttgcatatgctgttgtttttgccttcacatttggtttggccattaagtttttcaacttccagaaaagatagaagagcttacctgctgaagatggaacattcaagaaatgcttataaaaataatgtattcaggttaccacttgaacaagtatatatatgttctgtttgttttgtatcacagtactatgcagtgaaatgattttgtaagttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="62917" stop="61441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62617" g_stop="62550" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62549" i_stop="62480" i_length="70">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62479" g_stop="62225" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="323" r_length="255" r_score="0.898"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62224" i_stop="62150" i_length="75">
            <donor d_prob="0.991" d_score="0.86"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62149" g_stop="61752" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="713" r_length="390" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="740"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E694215" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62617" e_stop="62550"/>
          <exon e_start="62479" e_stop="62225"/>
          <exon e_start="62149" e_stop="61752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTACAGTATATTACAGAGAAAGAGCTGCTGGAATGTATTCTGCCATCCCTTACGCCTTTGGACAAGTAAGCATATGATTTAACTTCTTACAAGCCTATCTCCGGTTTAAAAAGTCTAAATAACTCTAATCTGCAGACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTTCTTATGGTGTTATCGTCTATGCTATGATTGGATTTGAATGGACTGTGACCAAGTTCTTTTGGTACTTGTTTATAATGTTCTTCACTCTCTTGTACTTCACCTTCTATGGAATGATGAGTGTTGCCATTACCCCAAATCAACATGTCGCGCAAATTGTCTCTGTCTCCGGATATGGAATGTGGAATCTTTTCTCAGGATTCATTGTTCCACGACCTGTAAGTTCTTGAAACATTTGCATTTTGTACCTTCTTCACATGAAAATGATGACATGTTTTTTCTTTGAAAAATAGAGCATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGCATCACAATTCGGAGACCTCCAAAACAAAATTACTGATAGTGATGAGACAGCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTGTTGGAGTAGCTGCAGTGGTGACTGTTGCATATACTCTTGTTTTTGCCTTCACATTTGCTTTGGCTATTAAGGTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAACATCTTCATGAGGAAAATTCAAGAAATGCTTATAGAACTAATGTATTCAGGTTACCACTTGAAGATGTATATATATGATCTGTTTGTTTTGTATCACATTACTCTGCAATGAACTGATT</genome_strand>
        <mrna_strand>AGCGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAA......................................................................ACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAGTTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTACTTCACCTTCTATGGTATGATGAGCGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCT...........................................................................AGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTG-A-A----GAT--GGAACATTCAAGAAATGCTTATAAAAATAATGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCACAGTACTATGCAGTGAAATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367397" ref_strand="+" ref_description="SGN-E367397 [cLPT-7-B21]">
      <seq>ttgcagttgtaagatcccgagggtttttcccaaatgcatactggtactggataggtgtcagcgcacttattggtttcataatcgtctttaacatcttctacagacttgcactcgtttttctcaacccatttggtaagccgcaaggtatgatatcagaagacagtgatgatgccaaaacacaaacactgagaaagaagtatccactagtgagggccagaataagaaaaagggaatggttcttcaatttgaaccgcattccatcaccttcaatgaagttacgtactctgttgacatgcctcaggaaatgaaaaatcaaggtgccactgaagatagattggtacttctgaatggtgtatgcggagctttcaggcccggtgttttgacagcattgatgggagttagtggcgctggaaaaacaacgttaatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63870" stop="65045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64171" g_stop="64296" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64297" i_stop="64372" i_length="76">
            <donor d_prob="0.987" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64373" g_stop="64548" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="301" r_length="175" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64549" i_stop="64616" i_length="68">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64617" g_stop="64745" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="430" r_length="129" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E367397" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64171" e_stop="64296"/>
          <exon e_start="64373" e_stop="64548"/>
          <exon e_start="64617" e_stop="64745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGTTGTAAGATCTCGAGGGTTCTTCACAAATGCATACTGGTACTGGATAGGCGTTGGTGCACAAATTGGTTTCACAATCGTCTTTAACATCTGCTACAGTATTGCACTCGCTTATCTCAACCGTGAGTATCTTTAGAATTTCACCATTCATTTTCCCCTAAAGGTGAAAACATTGAATGTTTAGTTGAATATCTACAGCATTTGGTAAGCCGCAAGGTATGATATCAGAAGACAGCAATGATGCCAAAACAACGAGCACTGAGAAAGAAGTGTCCACTAGTGAGGGCCAGAATAAGAAAAAGGGAATGGTTCTTCCATTTGAACCGCATTCTATAACCTTCGATGAAGTTACATACTCTGTTGACATGCCTCAGGTAACTAGCTGGGAATTGTTGTAGGATAAAAAAAATTATATTACTTAACTTTCCAATGATACTTCCAGGAAATGAAAAATCAAGGTGTCACTGAAGATAGATTGGTACTTCTGAATGGTGTATCTGGAGCTTTCAGGCCCGGTGTTTTGACAGCATTGATGGGAGTTAGTGGCGCTGGAAAAACAACGTTAATGGAT</genome_strand>
        <mrna_strand>TTGCAGTTGTAAGATCCCGAGGGTTTTTCCCAAATGCATACTGGTACTGGATAGGTGTCAGCGCACTTATTGGTTTCATAATCGTCTTTAACATCTTCTACAGACTTGCACTCGTTTTTCTCAACC............................................................................CATTTGGTAAGCCGCAAGGTATGATATCAGAAGACAGTGATGATGCCAAAAC-ACAAACACTGAGAAAGAAGTATCCACTAGTGAGGGCCAGAATAAGAAAAAGGGAATGGTTCTTCAATTTGAACCGCATTCCATCACCTTCAATGAAGTTACGTACTCTGTTGACATGCCTCAG....................................................................GAAATGAAAAATCAAGGTGCCACTGAAGATAGATTGGTACTTCTGAATGGTGTATGCGGAGCTTTCAGGCCCGGTGTTTTGACAGCATTGATGGGAGTTAGTGGCGCTGGAAAAACAACGTTAATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690375" ref_strand="+" ref_description="SGN-E690375 [LH_Ea03F13]">
      <seq>cgttgcgtacagtattttacagagaaagagctgctggaatgtattcttccctcccctatgcctttggacaaactttcattgaaataccatatgtctttgtgcaagctgttacctatgctgttatcatctatgctatgatcggatttgaatggacagtgagcaagttcttttggtacttgtttatcatgtatttcactttcttgtacttcaccttctatggtatgatgagcgttgccgtttccccaaatcaaaatattgcgcaaattgtctctctcttcggctattcaatgtggaatcttttctcaggattcatgattccgcgacctagtatgcccatatggtggagatggtactattgggctgatcctgttgcctggacattgtatggtttggttgtatcgcaattcggagacctccaagataaaattactgatatagatgagacatccaaacaattcttgaggcgttactttgggttcaagcatgattttcttggagtagttgcagctgtgactgttgcatatgctgttgtttttgccttcacatttggtttggccattaagtttttcaacttccagaaaagatagaagagcttacctgctgaagatggaacattcaagaaatgcttataaaaataatgtattcaggttaccacttgaacaagtatatatatgttctgtttgttttgtatcgcactactatgcagtgaaatgattttgtaagtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65814" stop="67301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66108" g_stop="66180" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66181" i_stop="66250" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.379" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66251" g_stop="66505" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="326" r_length="255" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66506" i_stop="66598" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66599" g_stop="67009" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="737" r_length="411" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E690375" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66108" e_stop="66180"/>
          <exon e_start="66251" e_stop="66505"/>
          <exon e_start="66599" e_stop="67009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAGCGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAAGTAAGCATATGATTTAACTTCTTACAAGCCAATATCCGGTTTAAAAAGTCTAAATAACTCTAATCTGCAGACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAATTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTATTTCACCTTCTATGGTATGATGAGTGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCTGTAAGTTGTTGAAACAATTCCATTTTGTTTTACATGAAAATCAATTTAGAGCTTGAAAATGATGACATGTTTTCATTGATTTTAAATAACCAGAGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAATCGATTGT</genome_strand>
        <mrna_strand>CGTTG--CGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAA......................................................................ACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAGTTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTACTTCACCTTCTATGGTATGATGAGCGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCT.............................................................................................AGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCAAGAAATGCTTATAAAAATAATGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694215" ref_strand="+" ref_description="SGN-E694215 [LH_Ea03F13](-)">
      <seq>agcgtacagtattttacagagaaagagctgctggaatgtattcttccctcccctatgcctttggacaaactttcattgaaataccatatgtctttgtgcaagctgttacctatgctgttatcatctatgctatgatcggatttgaatggacagtgagcaagttcttttggtacttgtttatcatgtatttcactttcttgtacttcaccttctatggtatgatgagcgttgccgtttccccaaatcaaaatattgcgcaaattgtctctctcttcggctattcaatgtggaatcttttctcaggattcatgattccgcgacctagtatgcccatatggtggagatggtactattgggctgatcctgttgcctggacattgtatggtttggttgtatcgcaattcggagacctccaagataaaattactgatatagatgagacatccaaacaattcttgaggcgttactttgggttcaagcatgattttcttggagtagttgcagctgtgactgttgcatatgctgttgtttttgccttcacatttggtttggccattaagtttttcaacttccagaaaagatagaagagcttacctgctgaagatggaacattcaagaaatgcttataaaaataatgtattcaggttaccacttgaacaagtatatatatgttctgtttgttttgtatcacagtactatgcagtgaaatgattttgtaagttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65813" stop="67301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66113" g_stop="66180" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66181" i_stop="66250" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.379" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66251" g_stop="66505" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="323" r_length="255" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66506" i_stop="66598" i_length="93">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66599" g_stop="66994" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="719" r_length="396" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="740"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E694215" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66113" e_stop="66180"/>
          <exon e_start="66251" e_stop="66505"/>
          <exon e_start="66599" e_stop="66994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAAGTAAGCATATGATTTAACTTCTTACAAGCCAATATCCGGTTTAAAAAGTCTAAATAACTCTAATCTGCAGACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAATTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTATTTCACCTTCTATGGTATGATGAGTGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCTGTAAGTTGTTGAAACAATTCCATTTTGTTTTACATGAAAATCAATTTAGAGCTTGAAAATGATGACATGTTTTCATTGATTTTAAATAACCAGAGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAA</genome_strand>
        <mrna_strand>AGCGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAA......................................................................ACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAGTTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTACTTCACCTTCTATGGTATGATGAGCGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCT.............................................................................................AGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCAAGAAATGCTTATAAAAATAATGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCACAGTACTATGCAGTGAAATGATTTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693204" ref_strand="+" ref_description="SGN-E693204 [LH_Ea10L10]">
      <seq>ccatttggtttggccattaagtttttcaacttccagaaaagatctaagagcttacctgctgaagatggaacattcaagaaatgcttataaaaataatgtattcaggttaccacttgaacaagtatatatatgttctgtttgttttgtatcgcactactatgcagtgaaatgattttgtaagtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="66516" stop="67301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66815" g_stop="67009" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E693204" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66815" e_stop="67009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAATCGATTGT</genome_strand>
        <mrna_strand>CCATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATCTAAGAGCTTACCTGCTGAAGATGGAACATTCAAGAAATGCTTATAAAAATAATGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691289" ref_strand="+" ref_description="SGN-E691289 [LH_Ea05L15]">
      <seq>cgtttggtttggccattaagtttttcaacttccagaaaagatctaagagcttacctgctgaagatggaacattcaagaaatgcttataaaaataatgtattcaggttaccacttgaacaagtatatatatgttctgtttgttttgtatcgcactactatgcagtgaaatgattttgtaagtttgaatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="66516" stop="67305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66816" g_stop="67004" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="190" polyA_stop="200"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E691289" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66816" e_stop="67004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAATCG</genome_strand>
        <mrna_strand>CGTTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATCTAAGAGCTTACCTGCTGAAGATGGAACATTCAAGAAATGCTTATAAAAATAATGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697044" ref_strand="+" ref_description="SGN-E697044 [LH_Ea10L10](-)">
      <seq>catttggtttggccattaagtttttcaacttccagaaaagatagaagagcttacctgctgaagatggaacattcaagaaatgcttataaaaataatgtattcaggttaccaagggaacaagtatatatatgttctgtttgttttgtatttatcgactatgcagtgaaatgattttgtaagttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="66516" stop="67301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66816" g_stop="66994" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="184" polyA_stop="197"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E697044" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66816" e_stop="66994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAA</genome_strand>
        <mrna_strand>CATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCAAGAAATGCTTATAAAAATAATGTATTCAGGTTACCAAGGGAACAAGTATATATATGTTCTGTTTGTTTTGTATTTATCGACTATGCAGTGAAATGATTTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217634" ref_strand="+" ref_description="SGN-E217634 [cLEL-25-G11](-)">
      <seq>agttgcccgagcattgggctattctttggccatgtcaataaagggattatctggagaaacaccaattgttcaccttgccaaaaaatttcccttctcatgaggatcagaaattgtaatgaagtgtcacaataatttaaacattaactaattgagattaccaaactatctttcaccctctgtatgggggatgattatttttaggatcttagttttattgattaatttgccttcagacattgtttcacaatacaatcatgccaatgttgaagctggtgaaggcgtgggtttatgtaatagcaaggtgaacatgtgtcatgttctattctagttcccagaaaatgtattttgagcattcaattccatgtaacatttcaagttgtaaactgtgagaaaacatttagacccattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="75235" stop="74227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74935" g_stop="74530" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="409" polyA_stop="429"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E217634" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74935" e_stop="74530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACC-ATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAG-AATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTGAGAAAACATTTAGACACATT</genome_strand>
        <mrna_strand>AGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCAATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTGAGAAAACATTTAGACCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217590" ref_strand="+" ref_description="SGN-E217590 [cLEL-25-G23](-)">
      <seq>ctattctttggccatgtcaataaagggattatctggagaaacaccattgttcaccttgccaaaaaatttcccttctcatgaggatcagaattgtaatgaagtgtcacaataatttaaacattaactaattgagattaccaaactatctttcaccctctgtatgggggatgattatttttaggatcttagttttattgattaatttgccttcagacattgtttcacaatacaatcatgccaatgttgaagctggtgaaggcgtgggtttatgtaatagcaaggtgaacatgtgtcatgttctattctagttcccagaaaatgtattttgagcattcaattccatgtaacatttcaagttgtaaactgtcagaaaacatttagacacattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="75217" stop="74227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74917" g_stop="74530" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="409"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E217590" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74917" e_stop="74530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTGAGAAAACATTTAGACACATT</genome_strand>
        <mrna_strand>CTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTCAGAAAACATTTAGACACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282464" ref_strand="+" ref_description="SGN-E282464 [cLER-18-K17]">
      <seq>acaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaaggtacatgcaagtaggtaatgcagttgcagttccagttgcccgagcattgggctattctttggccatgtcaataaagggattatctggagaaacaccattgttcaccttgccaaaaaatttcccttctcatgaggatcagaattgtaatgaagtgtcacaataatttaaacattaactaattgagattaccaaactatctttcaccctctgtatgggggatgattatttttaggatcttagttttattgattaatttgccttcagacattgtttcacaatacaatcatgccaatgttgaagctggtgaaggcgtgggtttatgtaatagcaaggtgaacatgtgtcatgttctattctagttcccagaaaatgtattttgagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="75764" stop="74285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75464" g_stop="75394" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75393" i_stop="74969" i_length="425">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74968" g_stop="74585" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="455" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E282464" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75464" e_stop="75394"/>
          <exon e_start="74968" e_stop="74585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCAT</genome_strand>
        <mrna_strand>ACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346593" ref_strand="+" ref_description="SGN-E346593 [cTOF-28-L7]">
      <seq>gatgatcatcagcgtgtatgtcaaattccaaagcggaagggtgcaaacttcagggacttgcccggagttcgtgttcggccagataataaagttgaatgggacccagacgtggagagagtaaagctaccttctgggaagcctttggtccctgactatgcgatgagcttcgttggtggtagttcctcaaaaccatttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatccactacaagatagagtgctcacaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaaggtacatgcaagtaggtaatgcagttgcagttccagttgcccgagcattgggctattctttggccatgtcaataaagggattatctggagaaacaccattgttcaccttgccaaaaaatttcccttctcatgaggatcagaattgtaatgaagtgtcacaataatttaaacattaactaattgagattaccaaactatctttcaccctctgtatgggggatgattatttttaggatcttagttttattgattaatttgccttcagacattgtttcacaatacaatcatgccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76413" stop="74376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76113" g_stop="76075" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76074" i_stop="75988" i_length="87">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75987" g_stop="75883" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="144" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75882" i_stop="75810" i_length="73">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75809" g_stop="75766" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="188" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75765" i_stop="75661" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75660" g_stop="75591" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="258" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75590" i_stop="75498" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75497" g_stop="75394" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="362" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75393" i_stop="74969" i_length="425">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74968" g_stop="74676" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="655" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E346593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76113" e_stop="76075"/>
          <exon e_start="75987" e_stop="75883"/>
          <exon e_start="75809" e_stop="75766"/>
          <exon e_start="75660" e_stop="75591"/>
          <exon e_start="75497" e_stop="75394"/>
          <exon e_start="74968" e_stop="74676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAGGTAATTAAATTGTTTCTGTCATGCCATTTGTGGTACTAAGTGATGAGCTACTTGAAATGTTGAGTTCTTGACCTTCTGTGATTGTAGGGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAAT</genome_strand>
        <mrna_strand>GATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAG.......................................................................................GGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG.........................................................................GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316747" ref_strand="+" ref_description="SGN-E316747 [cTOB-5-L18]">
      <seq>ttcagttgaacgaagatgatcatcagcgtgtatgtcaaattccaaagcggaagggtgcaaacttcagggacttgcccggagttcgtgttcggccagataataaagttgaatgggacccagacgtggagagagtaaagctaccttctgggaagcctttggtccctgactatgcgatgagcttcgttggtggtagttcctcaaaaccatttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatccactacaagatagagtgctcacaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaaggtacatgcaagtaggtaatgcagttgcagttccagttgcccgagcattgggctattctttggccatgtcaataaagggattatctggagaaacaccattgttcaccttgccaaaaaatttcccttctcatgaggatcagaattgtaatgaagtgtcacaataatttaaacattaactaattgagattaccaaactatctttcaccctctgtatgggggatgattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76427" stop="74442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76127" g_stop="76075" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76074" i_stop="75988" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75987" g_stop="75883" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="158" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75882" i_stop="75810" i_length="73">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75809" g_stop="75766" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="202" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75765" i_stop="75661" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75660" g_stop="75591" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="272" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75590" i_stop="75498" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75497" g_stop="75394" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="376" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75393" i_stop="74969" i_length="425">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74968" g_stop="74742" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="603" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E316747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76127" e_stop="76075"/>
          <exon e_start="75987" e_stop="75883"/>
          <exon e_start="75809" e_stop="75766"/>
          <exon e_start="75660" e_stop="75591"/>
          <exon e_start="75497" e_stop="75394"/>
          <exon e_start="74968" e_stop="74742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAGGTAATTAAATTGTTTCTGTCATGCCATTTGTGGTACTAAGTGATGAGCTACTTGAAATGTTGAGTTCTTGACCTTCTGTGATTGTAGGGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATT</genome_strand>
        <mrna_strand>TTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAG.......................................................................................GGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG.........................................................................GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347489" ref_strand="+" ref_description="SGN-E347489 [cTOF-33-H2]">
      <seq>gataataaagttgaatgggacccagacgtggagagagtaaagctaccttctgggaagcctttggtccctgactatgcgatgagcttcgttggtggtagttcctcaaaaccatttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatccactacaagatagagtgctcacaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaaggtacatgcaagtaggtaatgcagttgcagttccagttgcccgagcattgggctattctttggccatgtcaataaagggattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76245" stop="74585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75945" g_stop="75883" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75882" i_stop="75810" i_length="73">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75809" g_stop="75766" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="107" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75765" i_stop="75661" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75660" g_stop="75591" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="177" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75590" i_stop="75498" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75497" g_stop="75394" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="281" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75393" i_stop="74969" i_length="425">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74968" g_stop="74885" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="365" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E347489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75945" e_stop="75883"/>
          <exon e_start="75809" e_stop="75766"/>
          <exon e_start="75660" e_stop="75591"/>
          <exon e_start="75497" e_stop="75394"/>
          <exon e_start="74968" e_stop="74885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATC</genome_strand>
        <mrna_strand>GATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG.........................................................................GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317106" ref_strand="+" ref_description="SGN-E317106 [cTOA-27-N13]">
      <seq>ttgccacaatatccattgcccacacataaagttattgtgaggggtgttattcccgtagaatttgagtcaaacacagttgcgtatgattcagtcagggatctcgagttaaagaaagaactctttcttggtgatgcactttctgatctccctttggtggagaacaatgagccaagagatgaaatgccttacactgatgagcctaaatctgatttccagcattttataagaatggggagggatgggttgttgggaagcgtactatatgatcatcgtcctcttcagttgaacgaagatgatcatcagcgtgtatgtcaaattccaaagcggaagggtgcaaacttcagggacttgcccggagttcgtgttcggccagataataaagttgaatgggacccagacgtggagagagtaaagctaccttctgggaagcctttggtccctgactatgcgatgagcttcgttggtggtagttcctcaaaaccatttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatccactacaagatagagtgctcacaattcgtgaaaatgcaaggctccaaggttttcctgactactacaagttgataggtccaataaaagaaggtacatgcaagtaggtaatgcagttgcagttccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76918" stop="74633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76613" g_stop="76527" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="153" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76526" i_stop="76435" i_length="92">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76434" g_stop="76347" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="241" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76346" i_stop="76164" i_length="183">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76163" g_stop="76075" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="330" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76074" i_stop="75988" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75987" g_stop="75883" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="435" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75882" i_stop="75810" i_length="73">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75809" g_stop="75766" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="479" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75765" i_stop="75661" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75660" g_stop="75591" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="549" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75590" i_stop="75498" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75497" g_stop="75394" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="652" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="75393" i_stop="74969" i_length="425">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="74968" g_stop="74933" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="688" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E317106" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76613" e_stop="76527"/>
          <exon e_start="76434" e_stop="76347"/>
          <exon e_start="76163" e_stop="76075"/>
          <exon e_start="75987" e_stop="75883"/>
          <exon e_start="75809" e_stop="75766"/>
          <exon e_start="75660" e_stop="75591"/>
          <exon e_start="75497" e_stop="75394"/>
          <exon e_start="74968" e_stop="74933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTGGTATGTATGAGATATTAAAGTTGTTTTGGATGCACCTCCAATTACTTAAACATAAACTAGTTACTCTTTTTTGCATATGATTTTCTCTTTAGGTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATGGTGAGTCCACATATTTTGCTTGTAGAGCAATTAGGTTTTGTTGTTCCACATTTGCATCAGAGAAGTATCAGCAAACACAACTCTTAATTATTATTTTGAAAAGTTTAATGTTGTAACTAGGGCTGAGCTTGAAATGGGTTCTGCGTTGATGAGTTTTGCTAATGCATTCTGGTCATTTTGTAGGGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAGGTAATTAAATTGTTTCTGTCATGCCATTTGTGGTACTAAGTGATGAGCTACTTGAAATGTTGAGTTCTTGACCTTCTGTGATTGTAGGGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAGGTATTGCTATGACTAAAATCTGAGATTTCAGTATTTCTTTTATTAAATCCCTGCTTTGCTCTATATCACCAATAGGCTGGCGACTGAGGGAAGGGGACATGTTTTTATTGTTTTCACTTAAAATATCATGCTACCGTGAGCTTAAACTAACAAGAGAATTAGGAAACTTGCCAGAGCTGCCAGTATTTGGGAGATATTTATGAATGGAAAAAGTTACTTGGCTTTTGTTTTCTTATAATGGCTGTTATGGATATTAATATACTAAACCAACCTAGAAGAAGCTTTGGAGATCTGTTATTATTTTTTAGTAGAAGCTTCCTATGAATGGAATAAGTCACTTGCCTTCTTCATCTGAATTTCTTTGATATTTGAAACAACATTTTGTTGCTTGCTGTGACATATTTTCATTGTTATATGACACTCAGGTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGT</genome_strand>
        <mrna_strand>TCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTG............................................................................................GTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATG.......................................................................................................................................................................................GGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAG.......................................................................................GGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG.........................................................................GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAG-AAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279934" ref_strand="+" ref_description="SGN-E279934 [cLER-8-M16]">
      <seq>aaatgccttacactgatgagcctaaatctgatttccagcattttataagaatggggagggatgggttgttgggaagcgtactatatgatcatcgtcctcttcagttgaacgaagatgatcatcagcgtgtatgtcaaattccaaagcggaagggtgcaaacttcagggacttgcccggagttcgtgttcggccagataataaagttgaatgggacccagacgtggagagagtaaagctaccttctgggaagcctttggtccctgactatgcgatgagcttcgttggtggtagttcctcaaaaccatttggtcgtttgtggtgggatgaaactgtcccaacagttgtgacgagagctgaaccccataatcagaccatagtacatccactacaagatagagtgctcacaatttctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76709" stop="75152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76409" g_stop="76347" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76346" i_stop="76164" i_length="183">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76163" g_stop="76075" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="152" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76074" i_stop="75988" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75987" g_stop="75883" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="257" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75882" i_stop="75810" i_length="73">
            <donor d_prob="0.779" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75809" g_stop="75766" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="301" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75765" i_stop="75661" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75660" g_stop="75591" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="371" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75590" i_stop="75498" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75497" g_stop="75452" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="417" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E279934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76409" e_stop="76347"/>
          <exon e_start="76163" e_stop="76075"/>
          <exon e_start="75987" e_stop="75883"/>
          <exon e_start="75809" e_stop="75766"/>
          <exon e_start="75660" e_stop="75591"/>
          <exon e_start="75497" e_stop="75452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATGGTGAGTCCACATATTTTGCTTGTAGAGCAATTAGGTTTTGTTGTTCCACATTTGCATCAGAGAAGTATCAGCAAACACAACTCTTAATTATTATTTTGAAAAGTTTAATGTTGTAACTAGGGCTGAGCTTGAAATGGGTTCTGCGTTGATGAGTTTTGCTAATGCATTCTGGTCATTTTGTAGGGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAGGTAATTAAATTGTTTCTGTCATGCCATTTGTGGTACTAAGTGATGAGCTACTTGAAATGTTGAGTTCTTGACCTTCTGTGATTGTAGGGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTGGTATGATTTTGTTGGAGTGATGTAGATATTGTGTTGTTCATTTTCAGGATCTGATGATGCTTAAAATTAACAGGTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAAGTAATGATAAATCTCTTTCCCCCCCTTGTTGAGTTGGTATCTTTATTTATTTCCACCTCCCTCTCCATAATGCTAAATACTATTTTTAATTGTGACATCATGCAGACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAGGTAGCTTTAACCTTTGCCATCTATGTTAATTCATAAAATTATTTATCTTGTTTCATCCTGATGCATTGTTCTTTATTCTCATGTTTCTTCCAGACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAA</genome_strand>
        <mrna_strand>AAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATG.......................................................................................................................................................................................GGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAG.......................................................................................GGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG.........................................................................GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA.........................................................................................................ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG.............................................................................................ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTTCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395863" ref_strand="+" ref_description="SGN-E395863 [TUS-18-E17](-)">
      <seq>aacacaaggcctaacttgggttatacgcatctatggagtaccccttgtaattgggaatgggttcatattgttaataactttactgcatcacactcatgcttcattgccacattatgattcatcagagtggagttggctaaaaggagctctagctacggtagatagagactatggtgtcctaaataaggtgtttcatcatatcgtagatacacacgttctacatcatgtattttcaagtataccacattatcatgctgtcgaggcaaccaaggccatcaagccgttactaggagaatactaccaatttgatggaactccattttacaaagcaatatggagggattttaatgagtgtcaatatgtggagaaagatgaagcatctcaacatcagggtattttttggtatacaaattacaacacataatattcattaataacaactggcttacgaatgtgttagccaatgcatgagttgttgtaattatttgtattttggatggagtgttatcataataataataatactgttacattaataaaaatgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="78582" stop="77446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78282" g_stop="77724" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E395863" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78282" e_stop="77724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATATTGTTACTTTAATTTTATTGTACAAACATTGTTAA</genome_strand>
        <mrna_strand>AACACAAGGCCTAACTTGGGTTATACGCATCTATGGAGTACCCCTTGTAATTGGGAATGGGTTCATATTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATGTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTTTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTAATTATTTGTATTTTGGATGGAGTGTTATCATAATAATAATAATACTGTTACATTAATAAAAATGTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373857" ref_strand="+" ref_description="SGN-E373857 [TUS-31-G16](-)">
      <seq>tcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaggtgtgattgcaactatttatttattatatcgcgttgctctaacacaaggcctaacttgggttatatgcatctatggagtaccccttgtaattgtgaatgggttcatagtgttaataactttactgcatcacactcatgcttcattgccacattatgattcatcagagtggagttggctaaaaggagctctagctacggtagatagagactatggtgtcctaaataaggtgtttcatcatatcgtagatacacacgttctacatcatctattttcaagtataccacattatcatgctgtcgaggcaaccaaggccatcaagccgttactaggagaatactaccaatttgatggaactccattttacaaagcaatatggagggattttaatgagtgtcaatatgtggagaaagatgaagcatctcaacatcagggtattttctggtatacaaattacaacacataatattcattaataacaactggcttacgaatgtgttagccaatgcatgagttgttgttgttatttgtattttggatggtgtgttatcataataataataatattgttactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="78763" stop="77447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78463" g_stop="77748" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E373857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78463" e_stop="77748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATATTGTTACTTTA</genome_strand>
        <mrna_strand>TCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATATTGTTACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397118" ref_strand="+" ref_description="SGN-E397118 [TUS-44-N12](-)">
      <seq>tgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaggtgtgattgcaactatttatttattatatcgcgttgctctaacacaaggcctaacttgggttatatgcatctatggagtaccccttgtaattgtgaatgggttcatagtgttaataactttactgcatcacactcatgcttcattgccacattatgattcatcagagtggagttggctaaaaggagctctagctacggtagatagagactatggtgtcctaaataaggtgtttcatcatatcgtagatacacacgttctacatcatctattttcaagtataccacattatcatgctgtcgaggcaaccaaggccatcaagccgttactaggagaatactaccaatttgatggaactccattttacaaagcaatatggagggattttaatgagtgtcaatatgtggagaaagatgaagcatctcaacatcagggtattttctggtatacaaattacaacacataatattcattaataacaactggcttacgaatgtgttagccaatgcatgagttgttgttgttatttgtattttggatggtgtgttatcataataataataatattgttacttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="78732" stop="77447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78432" g_stop="77748" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E397118" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78432" e_stop="77748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATATTGTTACTTTA</genome_strand>
        <mrna_strand>TGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATATTGTTACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215092" ref_strand="+" ref_description="SGN-E215092 [cLEC-78-H11]">
      <seq>gaaaatcatgtgcccaaacttgaagtcaaactaaaatggtacactaaattatacgtgaataatccacttggacgattattattaattgtcttcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaggtgtgattgcaactatttatttattatatcgcgttgctctaacacaaggcctaacttgggttatatgcatctatggagtaccccttgtaattgtgaatgggttcatagtgttaataactttactgcatcacactcatgcttcattgccacattatgattcatcagagtggagttggctaaaaggagctctagctacggtagatagagactatggtgtcctaaataaggtgtttcatcatatcgtagatacacacgttctacatcatctattttcaagtataccacattatcatgctgtcgaggcaaccaaggccatcaagccgttactaggagaatactaccaatttgatggaactccattttacaaagcaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="78854" stop="77648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78554" g_stop="77948" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E215092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78554" e_stop="77948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATAT</genome_strand>
        <mrna_strand>GAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202163" ref_strand="+" ref_description="SGN-E202163 [cLEC-7-D11]">
      <seq>gaaaatcatgtgcccaaacttgaagtcaaactaaaatggtacactaaattatacgtgaataatccacttggacgattattattaattgtcttcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaggtgtgattgcaactatttatttattatatcgcgttgctctaacacaaggcctaacttgggttatatgcatctatggagtaccccttgtaattgtgaatgggttcatagtgttaataactttactgcatcacactcatgcttcattgccacattatgattcatcagagtggagttggctaaaaggagctctagctacggtagatagagactatggtgtcctaaataaggtgtttcatcatatcgtagatacacacgttctacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="78854" stop="77758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78554" g_stop="78058" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E202163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78554" e_stop="78058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCA</genome_strand>
        <mrna_strand>GAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210819" ref_strand="+" ref_description="SGN-E210819 [cLEC-68-L21]">
      <seq>tcaagaaggctatccctcctcattgctttcaacgctctctcgttcgctcctcttcctatcttatttacgatctcatacttgtcttcatcttctattacatcgcctctacttatttccacgtccttccaaaaccgtattatccatacctagcatggcctatttattggatcgttcaaggatgtgtttgcaccgcactatgggtcattgcccatgaatgtggccaccaatcctttagtgattaccaatggataaatgacactatcggttttatcctccactctgcacttttaacaccatacttctcatggaaatatagtcatcgtcgtcatcactccaatactaattcccttgagcatgatgaaaatcatgtgcccaaacttgaagtcaaactaaaatggtacactaaattatacgtgaataatccacttggacgattattattaattgtcttcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaggtgtgattgcaactatttatttattatatcgcgttgctctaacacaaggcctaacttgggttatatgcatctatggagtaccccttngtattgtgaatggggtcatagtggtaataactttactgcatcacactcatgcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="79213" stop="77880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78913" g_stop="78180" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E210819" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78913" e_stop="78180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCA</genome_strand>
        <mrna_strand>TCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTNGTATTGTGAATGGGGTCATAGTGGTAATAACTTTACTGCATCACACTCATGCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212322" ref_strand="+" ref_description="SGN-E212322 [cLEC-74-E19]">
      <seq>tcaagaaggctatccctcctcattgctttcaacgctctctcgttcgctcctcttcctatcttatttacgatctcatacttgtcttcatcttctattacatcgcctctacttatttccacgtccttccaaaaccgtattatccatacctagcatggcctatttattggatcgttcaaggatgtgtttgcaccgcactatgggtcattgcccatgaatgtggccaccaatcctttagtgattaccaatggataaatgacactatcggttttatcctccactctgcacttttaacaccatacttctcatggaaatatagtcatcgtcgtcatcactccaatactaattcccttgagcatgatgaaaatcatgtgcccaaacttgaagtcaaactaaaatggtacactaaattatacgtgaataatccacttggacgattattattaattgtcttcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaagtgtgattgcaactatttatttattatatcgccgtgctctaacacaaggcctaacttgggttatatgcatctatggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="79213" stop="77944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78913" g_stop="78244" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E212322" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78913" e_stop="78244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGT</genome_strand>
        <mrna_strand>TCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAAGTGTGATTGCAACTATTTATTTATTATATCGCCGTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373858" ref_strand="+" ref_description="SGN-E373858 [TUS-31-G16]">
      <seq>ttgaactttgagatttaggatatagcaaaagcaaaaatgggaggtggtggtaattctatgagtaatccaacaactaaaaatcgagttccaagttcaaagcccccttttacgattggtgatatcaagaaggctatccctcctcattgctttcaacgctctctcgttcgctcctcttcctatcttatttacgatctcatacttgtcttcatcttctattacatcgcctctacttatttccacgtccttccaaaaccgtattatccatacctagcatggcctatttattggatcgttcaaggatgtgtttgcaccgcactatgggtcattgcccatgaatgtggccaccaatcctttagtgattaccaatggataaatgacactatcggttttatcctccactctgcacttttaacaccatacttctcatggaaatatagtcatcgtcgtcatcactccaatactaattcccttgagcatgatgaaaatcatgtgcccaaacttgaagtcaaactaaaatggtacactaaattatacgtgaataatccacttggacgattattattaattgtcttcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccttatgatcgttttgcaagtcattatgatccatatagccctatctacaatgaccgtgagagactacaaatttacatctcagatgcaggtgtgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="79335" stop="78014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79121" g_stop="79110" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79109" i_stop="79023" i_length="87">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79022" g_stop="78314" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="721" r_length="709" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E373858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79121" e_stop="79110"/>
          <exon e_start="79022" e_stop="78314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACTTTGAGGTATTTAAATTAATTTCTTTCTTTTCATAACAAAAAATTTACCAATTTTAATTATGAAGCATGATGATTTAAATTTGATTATTGCAGATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTG</genome_strand>
        <mrna_strand>TTGAACTTTGAG.......................................................................................ATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397119" ref_strand="+" ref_description="SGN-E397119 [TUS-44-N12]">
      <seq>tttgaactttgagatttaggatatagcaaaagcaaaaatgggaggtggtggtaattctatgagtaatccaacaactaaaaatcgagttccaagttcaaagcccccttttacgattggtgatatcaagaaggctatccctcctcattgctttcaacgctctctcgttcgctcctcttcctatcttatttacgatctcatacttgtcttcatcttctattacatcgcctctacttatttccacgtccttccaaaaccgtattatccatacctagcatggcctatttattggatcgttcaaggatgtgtttgcaccgcactatgggtcattgcccatgaatgtggccaccaatcctttagtgattaccaatggataaatgacactatcggttttatcctccactctgcacttttaacaccatacttctcatggaaatatagtcatcgtcgtcatcactccaatactaattcccttgagcatgatgaaaatcatgtgcccaaacttgaagtcaaactaaaatggtacactaaattatacgtgaataatccacttggacgattattattaattgtcttcacactcactgctggcttacctttatactatgccatcaatatagccggtagaccctatgatcgttttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="79336" stop="78093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79122" g_stop="79110" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79109" i_stop="79023" i_length="87">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79022" g_stop="78393" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="643" r_length="630" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E397119" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79122" e_stop="79110"/>
          <exon e_start="79022" e_stop="78393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACTTTGAGGTATTTAAATTAATTTCTTTCTTTTCATAACAAAAAATTTACCAATTTTAATTATGAAGCATGATGATTTAAATTTGATTATTGCAGATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCA</genome_strand>
        <mrna_strand>TTTGAACTTTGAG.......................................................................................ATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCCTATGATCGTTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290375" ref_strand="+" ref_description="SGN-E290375 [cLES-20-I4]">
      <seq>aactttgagatttaggatatatcacaagcaaaaatgggaggtggtggaaattctatgagtaatccaacaactaaaaatcgagttccaagttcaaagcccccttttacgattggtgatatcaagaaggctatccctcctcattgctttcaacgctctctcgttcgctcctcttcctatcttatttacgatctcatacttgtcttcatcttctattacatcgcctctacttatttccacgtccttccaaaaccgtattatccatacctagcatggcctatttattggatcgttcaaggatgtgtttgcaccgcactatgggtcattgcccatgaatgtggccaccaatcctttagtgattaccaatggataaatgacactatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="-" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="79332" stop="78350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79118" g_stop="79110" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79109" i_stop="79023" i_length="87">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79022" g_stop="78650" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="382" r_length="373" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="-" ref_id="SGN-E290375" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79118" e_stop="79110"/>
          <exon e_start="79022" e_stop="78650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTGAGGTATTTAAATTAATTTCTTTCTTTTCATAACAAAAAATTTACCAATTTTAATTATGAAGCATGATGATTTAAATTTGATTATTGCAGATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCG</genome_strand>
        <mrna_strand>AACTTTGAG.......................................................................................ATTTAGGATATATCACAAGCAAAAATGGGAGGTGGTGGAAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200818" ref_strand="+" ref_description="SGN-E200818 [cLEC-9-N13]">
      <seq>tcatctctctttaacttatacaaaagaatctattttaggattgatcaagagaccatgggagctggtggaaatatgtctactccaacaactaaaaaaagtcatctccaaagagttccatcttcgaagcccccttttacacttggcgatgtgaagaaggccattcctcctcactgcttccaacgttctcttattcgatccttctcttatcttattcaagatctcatacttgtctccgtcttctattatattgccaacacttacttccatctccttccatctccattaacttaccttgcctggcccgcttattggatcgcgcaaggttgtgtttccactgggatatgggtcattggacacgaatgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81958" stop="83120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82258" g_stop="82284" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82285" i_stop="82536" i_length="252">
            <donor d_prob="0.697" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82537" g_stop="82875" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="366" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E200818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82258" e_stop="82284"/>
          <exon e_start="82537" e_stop="82875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCTCTTTAACTTATACAAAAGAGTAAGGCTAAAAGAATTCTCTTTTGATCTTTGCTTTTTGCTTTGCTTTAATTTTGATTAAGCGCTTATCATTATATCAAAAAACATTTTAACTTTAACACTTTCTTATCCTAATAATGAAAATTTTATTTATGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TCATCTCTCTTTAACTTATACAAAAGA............................................................................................................................................................................................................................................................ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578264" ref_strand="+" ref_description="SGN-E578264 [LE12BE10]">
      <seq>gagataattgtgtgtaattatatatcataggtgcatgttgcctagcaaaggtaaacgactttcataattatgttacaatctccatataattagaattgtaattatgtgacaagtatacaacaatttcaacatctcacttaattaaactcccttaattatattagtataagggttatattctagaaaatcaatttaagtaattttagaagttaaggaaggagccctaaacctaatattttcctttgtagtctaaatagtgtaatataataatatggtaccgtagattcaaagtggactcctttattttttgagttatttaagttaccttttataatcttcgtccataacaataataacatatttggttagattataagtagggtctatgaagagtagtgcgtacataaatctaagagtttccaatagatctttattttaatgattgctgatatatggagtgataaataatacacgaaatatttgaatatataaaaataatttttttaaaatcaccctttttcttgcactagcttaaaaggagatcaatatgtaatttaaaacaaattttacgtacctagtcatttcgttaaaaaaaatgtattttaagtacatgtgttgttaaaaataatgaactacttagttgttttacaaagaaattaaactcaaagtgatttgatatcaataggaaaaacaaactttgattagtcaaatatgttatgcgtaactaatactacttcctatttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="91649" stop="92998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91949" g_stop="92698" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E578264" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91949" e_stop="92698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATAATTGTGTGTAATTATATATCATAGGTGCATGTTGCCTAGCAAAGGTAAACGACTTTCATAATTATGTTACAATCTCCATATAATTAGAATTGTAATTATGTGACAAGTATACAACAATTTCAACATCTCACTTAATTAAACTCCCTTAATTATATTAGTATAAGGGTTATATTCTAGAAAATCAATTTAAGTAATTTTAGAAGTTAAGGAAGGAGCCCTAAACCTAATATTTTCCTTTGTAGTCTAAATAGTGTAATATAATAATATGGTACCGTAGATTCAAAGTGGACTCCTTTATTTTTTGAGTTATTTAAGTTACCTTTTATAATCTTCGTCCATAACAATAATAACATATTTGGTTAGATTATAAGTAGGGTCTATGAAGAGTAGTGCGTACATAAATCTAAGAGTTTCCAATAGATCTTTATTTTAATGATTGCTGATATATGGAGTGATAAATAATACACCAAATATTTGAATATATAAAAATAATTTTTTTAAAATCACCCTTTTTCTTGCACTAGCTTAAAAGGAGATCAATATGTAATTTAAAACAAATTTTACGTACCTAGTCATTTCGTTAAAAAAAATGTATTTTAAGTACATGTGTTGTTAAAAATAATGAACTACTTAGTTGTTTTACAAAGAAATTGAACTCAAAGTGATTTGATATCAATAGGAAAAACAAACTTTGATTAGTCAAATATGTTATGCGTAACTAATACTACTTCCTATTTTTTTTTT</genome_strand>
        <mrna_strand>GAGATAATTGTGTGTAATTATATATCATAGGTGCATGTTGCCTAGCAAAGGTAAACGACTTTCATAATTATGTTACAATCTCCATATAATTAGAATTGTAATTATGTGACAAGTATACAACAATTTCAACATCTCACTTAATTAAACTCCCTTAATTATATTAGTATAAGGGTTATATTCTAGAAAATCAATTTAAGTAATTTTAGAAGTTAAGGAAGGAGCCCTAAACCTAATATTTTCCTTTGTAGTCTAAATAGTGTAATATAATAATATGGTACCGTAGATTCAAAGTGGACTCCTTTATTTTTTGAGTTATTTAAGTTACCTTTTATAATCTTCGTCCATAACAATAATAACATATTTGGTTAGATTATAAGTAGGGTCTATGAAGAGTAGTGCGTACATAAATCTAAGAGTTTCCAATAGATCTTTATTTTAATGATTGCTGATATATGGAGTGATAAATAATACACGAAATATTTGAATATATAAAAATAATTTTTTTAAAATCACCCTTTTTCTTGCACTAGCTTAAAAGGAGATCAATATGTAATTTAAAACAAATTTTACGTACCTAGTCATTTCGTTAAAAAAAATGTATTTTAAGTACATGTGTTGTTAAAAATAATGAACTACTTAGTTGTTTTACAAAGAAATTAAACTCAAAGTGATTTGATATCAATAGGAAAAACAAACTTTGATTAGTCAAATATGTTATGCGTAACTAATACTACTTCCTATTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273842" ref_strand="+" ref_description="SGN-E273842 [cLEN-7-G17]">
      <seq>gaagagcagcctagaaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttacaatgctaggaagcccatgaaacagaggtaccattataatgtaacagatacaagactagcagagcatgtggagaaagggactgaagatggattatacataagttgtgtggcatcttgttccgacttctgggctattatcatggatgctggaaccaatttcactagccaagtttatgagctatcacaatcattcttgcacaaggagtgggttatggaacagtgggagaagaactattatattagttctcttgctggtgctaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacctccatggcaactgctggaagtaggtgggcggttgttatgtctcgtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="93721" stop="97178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94021" g_stop="94108" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94109" i_stop="95999" i_length="1891">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96000" g_stop="96174" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="264" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96175" i_stop="96442" i_length="268">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96443" g_stop="96533" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="355" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96534" i_stop="96737" i_length="204">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96738" g_stop="96878" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="496" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E273842" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94021" e_stop="94108"/>
          <exon e_start="96000" e_stop="96174"/>
          <exon e_start="96443" e_stop="96533"/>
          <exon e_start="96738" e_stop="96878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGGCGCCCTAGAAAG-AGGTTTGCATTGGAGTTCCTGCTTCCCAGTGGATTTTGATTTACAATGCTAGGAAGCCCATGAAACAGAGGGGAAATTTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAGGTAAATGTGAAGTCCCATTCATTCCACTATACTAAGGAATCATTCATTTGCCATGTACCTCAGTGTATGGTACTTGCATATGTTCATGAAAATACAATAAATTTTTGCCAAAAGCGGCACACACTCCTACCAAATACTTCCACACAACTGTAATCTGTGTATATTGTATCCGAGTACATGTATGATGTAATATAGTTCTTAATGCACTTCACTGTCGCTTCAACCTGATATTTTAACTATCTTAGTTCTTGTAATGCATTATTTACAGGAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATT</genome_strand>
        <mrna_strand>GAAGAGCAGCCTAGAAAGAAGGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAG............................................................................................................................................................................................................................................................................GAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277070" ref_strand="+" ref_description="SGN-E277070 [cLEN-22-P11]">
      <seq>tagaaagaatgttcgcatcggagttcctgcatcacagtggatttcgatttacaatgctaggaagcccatgaaacagaggtaccattataatgtaacagatacaagactagcagagcatgtggagaaagggactgaagatggattatacataagttgtgtggcatcttgttccgacttctgggctattatcatggatgctggaaccaatttcactagccaagtttatgagctatcacaatcattcttgcacaaggagtgggttatggaacagtgggagaagaactattatattagttctcttgctggtgctaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacctccatggcaactgctggaagtaggtgggcggttgttatgtctcgtaattcaggtgtcagtaaccaggtagtggagcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="93732" stop="97199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94032" g_stop="94108" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94109" i_stop="95999" i_length="1891">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96000" g_stop="96174" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="253" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96175" i_stop="96442" i_length="268">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96443" g_stop="96533" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="344" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96534" i_stop="96737" i_length="204">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96738" g_stop="96895" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="502" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E277070" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94032" e_stop="94108"/>
          <exon e_start="96000" e_stop="96174"/>
          <exon e_start="96443" e_stop="96533"/>
          <exon e_start="96738" e_stop="96895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAG-AGGTTTGCATTGGAGTTCCTGCTTCCCAGTGGATTTTGATTTACAATGCTAGGAAGCCCATGAAACAGAGGGGAAATTTTCGTTTCATATTACATCTTCTCTTTGCAAAGCAATTAAATTGTGATCTACATGCTGAAATTACATTATTCGGTGGATTCTATATTTTTCTTTCTGTTAGTCCTTTTGTTACAAGATAATTGTAACTTCATTAAGCTAGTACCAAGAAGGTACTGCAAGACAGTACAATGAGAAAATTAATCTAGCTCATTACATCTTTTTGACATAACGGAGTCCAAAAAAAATGTTCCACATTTCCTACCTACCCTCCTTGCACCATGAAGACAGACTATGGATACAATTGGATATAAGTCTAGTTCGATGTTGTTTTCTTTCTTCAAATTATCTCTTCTTCCTCTAGCCAAATACTCCACATGATGTGCAATTAGATGTTCTTACCTTTTGCTTATTGTTGTTTCTTTAGTGGTAACATCTTCAATGTACATCTTTGGAATTTTCTCTTTGATTTCCTCTTTTCTGCAAATTGGGGGTAGGGCTACTTCATGGGTGGTGCGGTATGAAGACGGTTATCGATTTTGGCATTGCGAATTTCATTTTGGCAATGCGAATTTCCAAGAGCTTCTATAAACCTAGATAATTCTTTTGGTGTTCTGGGGTACTTTTTTGTTGCTAGTGATTCAGTGTAATATTTTGAGAGAGTCGTATTTTATCTTTCCTTGACTTGTAGTTATGTCTTCCTTTCAGCTTTCAACAATTCCAAAGAAGAAAAGTAAAGAAAAGACTTTCCTTCAGCTTTAGAAATTTTATGTATAGTAGCACTCGGTTTCATCATAATATGCCACTTCGCATAAACTTGTCTCTCCAGAATATTTTTTGTTTTGGCCTTTGGAAAAAGATTAGGGAAATTTTTAATTATTTTAGGAATGTCTTTATATGAATTTTGTCGTGGAGAAGCTTATTGATCTTGTGCTGGATTTCTTTGGTACATAAACTTGAGCAGTAAATGTTTTTTCATTACTTTTAAAAACAATTTCCCCTAGAAGTGTAAAGTATCATGATTGGGAAAACTATATGACTTACTGGGCTATTTAGGTGACATGCCACTTTATTCTATTATTACAAATGTACTGTATTCCTGATAAAAAAGAATTAAGAAATTAACTGGCTGCCACTATATGTGTATAAGAGGCTAGTTATGGTTACTAGATAATATTGTAGCTACCTTAAAGGCATATTTACTTGGTAAATTCACATCAGCATCTTTGTTCAAAATGAGTGCATCACTTTGTCCTTTATCTCGTGACTGGTAATCAGGAGTGTCCCAGGATGTATAGACTAAAGAAGATTGGGTGGCTTTTGTGGAGAAACATATTCTTTTGTAGGTTCTGATTTATGAAATGAAATTGTTTACCTGACCAAAACAACATGGTTAGACATTTTCAAGGATGACATGTGGTAAGGACTTCTCCAATGCTATTATTTTCATGGATAACTTTTCCCCGTTGTTTTCAGCATGACTTCTCCACTATTGTATTTCCTTCTTAATAATTGTTACTTGAGCTGAGGGCTCATTGGAAACAACCTCTCTACCTTCACAAGGTATGGGAAGGCTACATACACACCACCCTCCCAATTCTAACTTCTACACCGAGTATGTTGTTGTTATATCTTGTGGTTATGCTGCTTGCTTTCAGTAGAGAGTCCTTTTCTGTTCAGTATGTGGTGGTAAATGGGAATTATCTTGAGCCAAGGGTCTATCGGAAACAACTTTCTCTACCTTTGAGGTAGTGGTAAGGTTTGTGTACATTCTACCTTCCCTAGACCCTACTTTGTGGGATTATTCTGGGTTTGTTGTTGTTTTATGTGGTGGTTATTATAGATAATGTACTTTCTGAGTTTGTGTAGGCAAGTACACTACATAATGCAATGTATCTTGTCTTTAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAGGTAAATGTGAAGTCCCATTCATTCCACTATACTAAGGAATCATTCATTTGCCATGTACCTCAGTGTATGGTACTTGCATATGTTCATGAAAATACAATAAATTTTTGCCAAAAGCGGCACACACTCCTACCAAATACTTCCACACAACTGTAATCTGTGTATATTGTATCCGAGTACATGTATGATGTAATATAGTTCTTAATGCACTTCACTGTCGCTTCAACCTGATATTTTAACTATCTTAGTTCTTGTAATGCATTATTTACAGGAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAG</genome_strand>
        <mrna_strand>TAGAAAGAATGTTCGCATCGGAGTTCCTGCATCACAGTGGATTTCGATTTACAATGCTAGGAAGCCCATGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAG............................................................................................................................................................................................................................................................................GAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368936" ref_strand="+" ref_description="SGN-E368936 [TUS-25-F5](-)">
      <seq>gaactattatattagttctcttgctggtgctaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacctccatggcaactgctggaagtaggtgggcggttgttatgtctcgtaattcaggtgtcagtaaccaggtagtggagcttgattttctttatccaagtgaaggcattcataaacgatgggacaatggttatcgtattacagcaacagctgctacattagatcaagctgctcttatcctgagtgtgcctcgacgaaggcctggcgatgagactcaggagacattgagaacatctcagtttccaagcacacatgttaaggaaaaatgggcaaaaaatctctatctttcctgtctctgctatggacgaactgtatcttgagaggatggaaaatctgatgttggacatttttccttcaccccttttattttctcattgtcagtcaattgtaaaaagtgaggaaatcttaattatggtggcacttgcttcttttagcttgtttggatagtggcaaactttctcgtctcttgtgtacatacaattaacagcacaaaattacaaatctatgaatcttttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="96169" stop="98766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96469" g_stop="96533" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96534" i_stop="96737" i_length="204">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96738" g_stop="96895" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="223" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96896" i_stop="97760" i_length="865">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97761" g_stop="97949" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="412" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97950" i_stop="98208" i_length="259">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98209" g_stop="98476" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="680" r_length="268" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E368936" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96469" e_stop="96533"/>
          <exon e_start="96738" e_stop="96895"/>
          <exon e_start="97761" e_stop="97949"/>
          <exon e_start="98209" e_stop="98476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAGGTTGGTCCTCTTTCTTTGTCTGCATGTTTGTGATCATCTCTTCTGCCCAGTACGTCTTATTTTCATTAATACTTTATTGTAACAATATAAGCCTAGGCTAAGAGTCCATATCTTATTTTTTTTTTATTTGGACAGTTGTTGGAAGATTGTTGAATTATAAGAGATCTATTATGGAAATTTGCTAGAGCTAAATAGTAATGTCATGGAACTTATATTTGGTACAAGGAAGTAAAGGAGTAATTGTTACTCAATGGTTGAGTTAAAACAACAAATGAGTGATGGGGCCTACAGGGCTTTAAGCATAAAGCGAGTCATAAAGGGTTTCTCTGAAATGAAGTGCCTAATTTATCCATATACAGAAGTTGCAAAACATGTCGGTACTTATGACATCCAGCTGGAACTACAATTACCTCTTCTTTTTTATTTAAGGAATTAAAATTTCTAGCTTTGTATCCATATAGTATAGGCATATGTAGCAACTCAAGTTGAGTTATCACTGGAAGTATCTTGAGAAGAGGGCCAGAGAAAGATGATTTTAATGGCAAAATTGATAATCAATTTTCAATTAGTAAACCATAAGAAACAATTAGTACCTTTCATCATTTAATTTCATGATTATCGCCTTTAGTAACTCTACTTATTGAGTTGTTGAGAGAAACAGAAAAGAAGTCCTAAACAAAACTCATCATCGTGTTATTTTTGCTCTTTTTAGTAGGTGCTAACATTTTGTCCCTCCCGTTTTTATCAGAAGCGCATGTGTCTCTATGATGTTCCTTCTAGCTTGGTTTCATCTGTCTCTCCTCCTACCTTGGTTTTATCATGCACTCATACTATCTTAAGATAAAGTTGCTTTTTTTCCTGATAGGTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAGGTAATATAGGCAACTTGTGATGTGGAATGGTGTCTTCATCTGATTTAGCTTGAATATGTCTAGTAGAGCTTAGGTACATATAGTGAGAGGAAATTCTTTATCTTGTATTTAATATCTTTCATAAGCTTATTTTTTCGTGGTTGTATTATGAATAATATTTGGAGTCTCCAATCCATGTGGGGAAACCTCCAGTTTAAAGAGTTATTACATGTTGGTTATTTAGATGAGAGTAAGTAATGCACCTTTTTTTTTGTGCCAGGAAAAATGGGCAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAATCTATGAATCTTTTATATCTGTTGTGT</genome_strand>
        <mrna_strand>GAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAG...................................................................................................................................................................................................................................................................GAAAAATGGGCAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAATCTATGAATCTTTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376056" ref_strand="+" ref_description="SGN-E376056 [TUS-40-I24](-)">
      <seq>cttgctggtgctaccaatggaagctctcttgttgtaatgtcaaaaggcacacagttcagtcagcagtcttataaagtaagtgagtcattcccattcaagtggataagcaagaagtggaaagaagggttcaatgtaacctccatggcaactgctggaagtaggtgggcggttgttatgtctcgtaattcaggtgtcagtaaccaggtagtggagcttgattttctttatccaagtgaaggcattcataaacgatgggacaatggttatcgtattacagcaacagctgctacattagatcaagctgctcttatcctgagtgtgcctcgacgaaggcctggcgatgagactcaggagacattgagaacatctcagtttccaagcacacatgttaaggaaaaatgggcaaaaaatctctatctttcctgtctctgctatggacgaactgtatcttgagaggatggaaaatctgatgttggacatttttccttcaccccttttattttctcattgtcagtcaattgtaaaaagtgaggaaatcttaattatggtggcacttgcttcttttagcttgtttggatagtggcaaactttctcgtctcttgtgtacatacaattaacagcacaaaattacaaatctatgaatcttttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="96188" stop="98766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96488" g_stop="96533" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96534" i_stop="96737" i_length="204">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96738" g_stop="96895" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="204" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96896" i_stop="97760" i_length="865">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97761" g_stop="97949" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="393" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97950" i_stop="98208" i_length="259">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98209" g_stop="98476" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="661" r_length="268" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E376056" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96488" e_stop="96533"/>
          <exon e_start="96738" e_stop="96895"/>
          <exon e_start="97761" e_stop="97949"/>
          <exon e_start="98209" e_stop="98476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAGGTGTGTTCTCTAGTTTCATAGTTGAGCGTGTGCAAGTACACACAATGAGTAAACATTGTAACCTGAATGGTTTGAAGGCCTTCCCCCCATCTCAGTGGCAAAATGAGAACCCTGTTGTTGAAGGCTTTACCTTTATGCCTTTCGTCTCCAGGTAATGGACTTCCTTTAAGAAAGAATGTTAAAATTATTATTTTGTATTTGCAGGCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAGGTTGGTCCTCTTTCTTTGTCTGCATGTTTGTGATCATCTCTTCTGCCCAGTACGTCTTATTTTCATTAATACTTTATTGTAACAATATAAGCCTAGGCTAAGAGTCCATATCTTATTTTTTTTTTATTTGGACAGTTGTTGGAAGATTGTTGAATTATAAGAGATCTATTATGGAAATTTGCTAGAGCTAAATAGTAATGTCATGGAACTTATATTTGGTACAAGGAAGTAAAGGAGTAATTGTTACTCAATGGTTGAGTTAAAACAACAAATGAGTGATGGGGCCTACAGGGCTTTAAGCATAAAGCGAGTCATAAAGGGTTTCTCTGAAATGAAGTGCCTAATTTATCCATATACAGAAGTTGCAAAACATGTCGGTACTTATGACATCCAGCTGGAACTACAATTACCTCTTCTTTTTTATTTAAGGAATTAAAATTTCTAGCTTTGTATCCATATAGTATAGGCATATGTAGCAACTCAAGTTGAGTTATCACTGGAAGTATCTTGAGAAGAGGGCCAGAGAAAGATGATTTTAATGGCAAAATTGATAATCAATTTTCAATTAGTAAACCATAAGAAACAATTAGTACCTTTCATCATTTAATTTCATGATTATCGCCTTTAGTAACTCTACTTATTGAGTTGTTGAGAGAAACAGAAAAGAAGTCCTAAACAAAACTCATCATCGTGTTATTTTTGCTCTTTTTAGTAGGTGCTAACATTTTGTCCCTCCCGTTTTTATCAGAAGCGCATGTGTCTCTATGATGTTCCTTCTAGCTTGGTTTCATCTGTCTCTCCTCCTACCTTGGTTTTATCATGCACTCATACTATCTTAAGATAAAGTTGCTTTTTTTCCTGATAGGTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAGGTAATATAGGCAACTTGTGATGTGGAATGGTGTCTTCATCTGATTTAGCTTGAATATGTCTAGTAGAGCTTAGGTACATATAGTGAGAGGAAATTCTTTATCTTGTATTTAATATCTTTCATAAGCTTATTTTTTCGTGGTTGTATTATGAATAATATTTGGAGTCTCCAATCCATGTGGGGAAACCTCCAGTTTAAAGAGTTATTACATGTTGGTTATTTAGATGAGAGTAAGTAATGCACCTTTTTTTTTGTGCCAGGAAAAATGGGCAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAATCTATGAATCTTTTATATCTGTTGTGT</genome_strand>
        <mrna_strand>CTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG............................................................................................................................................................................................................GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAG...................................................................................................................................................................................................................................................................GAAAAATGGGCAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAATCTATGAATCTTTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224859" ref_strand="+" ref_description="SGN-E224859 [cLEL-27-A3](-)">
      <seq>gctgctacattagatcaagctgctcttatcctgagtgtgcctcgacgaaggcctggcgatgagactcaggagacattgagaacatctcagtttccaagcacacatgttaaggaaaaatgggcaaaaaaatctctatctttcctgtctctgctatggacgaactgtatcttgagaggatggaaaatctgatgttggacatttttccttcaccccttttattttctcattgtcagtcaattgtaaaaagtgaggaaatcttaattatggtggcacttgcttcttttagcttgtttggatagtggcaaactttctcgtctcttgtgtacatacaattaacagcccaaaattacaaatctatgaatcctttataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="97539" stop="98766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97839" g_stop="97949" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97950" i_stop="98208" i_length="259">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98209" g_stop="98465" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="369" r_length="258" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="385"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E224859" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97839" e_stop="97949"/>
          <exon e_start="98209" e_stop="98465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAGGTAATATAGGCAACTTGTGATGTGGAATGGTGTCTTCATCTGATTTAGCTTGAATATGTCTAGTAGAGCTTAGGTACATATAGTGAGAGGAAATTCTTTATCTTGTATTTAATATCTTTCATAAGCTTATTTTTTCGTGGTTGTATTATGAATAATATTTGGAGTCTCCAATCCATGTGGGGAAACCTCCAGTTTAAAGAGTTATTACATGTTGGTTATTTAGATGAGAGTAAGTAATGCACCTTTTTTTTTGTGCCAGGAAAAATGGGC-AAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAATCTATGAATCTTTTAT</genome_strand>
        <mrna_strand>GCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAG...................................................................................................................................................................................................................................................................GAAAAATGGGCAAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCCCAAAATTACAAATCTATGAATCCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224359" ref_strand="+" ref_description="SGN-E224359 [cLEL-27-A3](-)">
      <seq>ctgctacattagatcaagctgctcttatcctgagtgtgcctcgacgaaggcctggcgatgagactcaggagacattgagaacatctcagtttccaagcacacatgttaaggaaaaatgggcaaaaaaatctctatctttcctgtctctgctatggacgaactgtatcttgagaggatggaaaatctgatgttggacatttttccttcaccccttttattttctcattgtcagtcaattgtaaaaagtgaggaaatcttaattatggtggcacttgcttcttttagcttgtttggatagtggcaaactttctcgtctcttgtgtacatacaattaccagcacaaaattacaaatctatgaatcttttataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="97540" stop="98766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97840" g_stop="97949" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97950" i_stop="98208" i_length="259">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98209" g_stop="98465" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="368" r_length="258" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="369" polyA_stop="384"/>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E224359" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97840" e_stop="97949"/>
          <exon e_start="98209" e_stop="98465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAGGTAATATAGGCAACTTGTGATGTGGAATGGTGTCTTCATCTGATTTAGCTTGAATATGTCTAGTAGAGCTTAGGTACATATAGTGAGAGGAAATTCTTTATCTTGTATTTAATATCTTTCATAAGCTTATTTTTTCGTGGTTGTATTATGAATAATATTTGGAGTCTCCAATCCATGTGGGGAAACCTCCAGTTTAAAGAGTTATTACATGTTGGTTATTTAGATGAGAGTAAGTAATGCACCTTTTTTTTTGTGCCAGGAAAAATGGGC-AAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAATCTATGAATCTTTTAT</genome_strand>
        <mrna_strand>CTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAG...................................................................................................................................................................................................................................................................GAAAAATGGGCAAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTACCAGCACAAAATTACAAATCTATGAATCTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368937" ref_strand="+" ref_description="SGN-E368937 [TUS-25-F5]">
      <seq>gaaagtaggaatgtcgccagtttatcaggttgaaaggaagttaggtaaaggtgggtttggtcaggtctttttgggtcgtcgtctttctggtggaaatgaatcttcaaatggtcaaggggctgttgaggttgcactgaaatttgagcatatgaaaagcaaaggctgtaactatggtcctccacatgagtggcaagtttacaatactcttggaggcagccatggagtgcctagcgtgcattataaagggagggtaggagactattacgtaatggttatggacatgctagggcctagcttatgggatgtatggaattcctctgggcaggcgatgtctgcagaaatggtagcatgtattgcagttgagtctctgtcaattttaagcataatgcatgcacaaggttatgtgcatggagatgtaaagccagagaactttttgcttggtcagccatcaactctgcaggagaagaagttgttccttgtcgacttgggactagcaacaaagtggagagagaatgtgaaaggtccgcatgtggtatatgatcagcgacctgacatgtttagagggactgttcggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="99647" stop="103400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99947" g_stop="100073" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100074" i_stop="100183" i_length="110">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100184" g_stop="100257" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="201" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100258" i_stop="100342" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100343" g_stop="100412" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="271" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100413" i_stop="102274" i_length="1862">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102275" g_stop="102330" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="327" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102331" i_stop="102485" i_length="155">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102486" g_stop="102557" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="399" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102558" i_stop="102704" i_length="147">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102705" g_stop="102799" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="494" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102800" i_stop="102882" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102883" g_stop="102949" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="561" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="102950" i_stop="103035" i_length="86">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="103036" g_stop="103100" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="626" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E368937" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99947" e_stop="100073"/>
          <exon e_start="100184" e_stop="100257"/>
          <exon e_start="100343" e_stop="100412"/>
          <exon e_start="102275" e_stop="102330"/>
          <exon e_start="102486" e_stop="102557"/>
          <exon e_start="102705" e_stop="102799"/>
          <exon e_start="102883" e_stop="102949"/>
          <exon e_start="103036" e_stop="103100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAGGTATGTGCTTGGTCTCCCCCTTCCCCTCTCACTGCCTATGCTAGACAATTTGTTTTCCACAAGTAATATTAGGGGATTTTACTCTCACTGGTTTATCTTTATGGCTCCAGGTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAAGTATGGATATGGACCTCTTTTGGAGTGAATGGGTGCTCATTTTAGAATATGATTCTAACTAGACTAAACTTGTTTTGTTGAGCAGTACTCTTGGAGGCAGCCATGGAGTGCCTAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACGTAATGGTATGTGTAGTAAAGTTATGTTTTTTTCCATTAAGTGTGTAGCAGAATTATGCTTCTGCCATTAATATTAATTGGTATAACCATTAAGATTGGTAAACTATAACTTTTAACAGTTAAGTTGGCGTTTGAGTCAAAAAGTCAAATTAGCTGTTGACTGGTGGAAATCAATGTCGCATCCCAAATGGATTATGCGTCCGGCACTAGTGCCTACCAACTTGCACTGAGCGCACTATTGTAGCATAATGCGTACCCCATCTTGTATCACATAATTCATTTCATTAAATTAATAACAACATTAATTATGGGAGAAATATAGTGAACTGCATTAACGATCAAGGTGGATCAAAGCGTAAACTAGACGTAAGTTGAAATGTCATTCACTATTCTGTATGAGTATCCATCACTCAGAAGTAATACAAATCGTTTATGGGGCCTTTATGATGCTACAAATGAATAATTAAGTTGCAAGGTTTGCCAGGGCTGCAAAAATATAGAACTAAAATTTAGTGATCCCACTAGTCCAAAAGTGGGCTCACCAAAAGAATTAAGTTGAACTCTAGCCTGTACGCTGGCAACCTTGCACTCGACTGTTTCCTAAACCTAAACAAATGATGCCTAAGTATTGAAATACTTAGATATGCGTCATAGCCAAACCAGTCATGGTTGGTCAAGAGTTATGCAAACAAAATATATAATAAATGCATAAAAGGAAATAAGTCAAATTGGGATTAGCTCATCAGTTCATTTAGTAAAAACATTTCTATTATCAATCAGTGAATAAAATCATTTCAATTGACATAACAATTTATAAAAGCATCAATTATGTATCAAGACATCTATAGGACCATTTAGTGTGGCAACTACATCTTTGTTTAGAATGTGAATTTAACAAAGAGACATGAACAAAGACTTTTATTCTTTGAGAATATATTTATGACACAAGATTTAAATTTTATGTTGAGTCCCACTTAATGAGAATATGCTGATTTTTTAAATTTCCCTTTCTTGACCAAATTAAAATTTTATAAGCGCAAGTCTTGTCATCCCCAATTTTCATCCTCCTTGCCGTAACTCTCTTTGCATAACCCCATTTTCTTTTTAGCTTATATAACATTGTATTATTGGCATAAAATTCGTCTCATGCTTGTATGTGCCTATAACTTTGCCAATTCATTTGCAATTTTGGTGTCATGGGGTTCGGCCCCTGCACCCCATAAATTTCCAATTCTTTGCCCCTTTTTTGTTTCCATTTCCATTTTCAATACAAGTAAATTTTCAGACTCCATATATGTACTCCTGGCCAATTATATCAGTATTAACATGTCCGTTATAATGTTTTTCTCAAGCATCGTCGTTGCGCAAACAATAATTCAAATATTTATTAGCGCGCTTCAAGGTATTGCAACTTGGTTGACTTTTTAGAAGTGCTATACTCAGGAAGGTTTCTGCATTGAAATGTTGAACTAGAAGGGAGTTGTTTTGAAATATGACGATCTGTGTGGGAGGTCAGTGGAGTTGACCCACATTATTTTGGTTTCAATGGAGACCCTCAGGTGCTTTTTTGACTGGTTGGTATGTTACTGAATGCCCTTTCAGGGATGACTGGTAAGAGTGGTTTCTTGAACTGTGACTTGGACAGTTTCTTTGCTATGAGAAGTCATAGGTTCTTGGATAGACTGATTCTTTCTTTTTAATATTTTTTTTTGGATGAGATACTTGTTTTGGACTGAGCCTTTGCTTTGCTTGCAGTTAGTACTGCTACTGTTAGATTATTTTGAAGATTGTGATACTGGTTCATGCATTTTTTATGTTGTGTTCATGTAAGGATGGATGACACCTATTGACCACATTAGTCTATGCAGGTTATGGACATGCTAGGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGCGTAAGTGTCTAAATGTTTAGTTCCTCAGCAAGCTCATTTTTCCTCCATTATCATGCATGCCATTAACTTTTCTTTGTATAGATAATATTCAGATGTGATGTTGGACTTCAAGCAATAGAAGGTAAGATCTTAACTATGCTTTTCTATTATTGCAGGATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGGGTATGGAATGCTCTCTTCTTGTTACTACTACTGTTATTATGTCCAATCTAGTTGTCCGGCTGCTGGTTTAATAATTTATGTTACTGCTTTTGAACTTTACTGATAGATGCTAGTATCTTTTCTATTGATTGTTGTTCTCGGCCACAGTTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGACTAGGTAATAGCATTTATTTTACTATAATATCGTAGTGATTATAGATTCAGTATTCCGTTAATCTTTTCCAAACTACCAAATTACAGCAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAGGTCAGTTCTATATAGTGTTATCCTTAACCATAATTTTGATCATTGCCACTTGTTCTGCTTATCAACCTTTTGTGAATGGCTTCTAGAGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATC</genome_strand>
        <mrna_strand>GAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAG..............................................................................................................GTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAA.....................................................................................TACTCTTGGAGGCAGCCATGGAGTGCCTAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACGTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGC...........................................................................................................................................................GATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGG...................................................................................................................................................TTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGACTAG...................................................................................CAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAG......................................................................................AGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249027" ref_strand="+" ref_description="SGN-E249027 [cLEF-49-C22]">
      <seq>gaaagtaggaatgtcgccagtttatcaggttgaaaggaagttaggtaaaggtgggtttggtcaggtctttttgggtcgtcgtctttctggtggaaatgaatcttcaaatggtcaaggggctgttgaggttgcactgaaatttgagcatatgaaaagcaaaggctgtaactatggtcctccacatgagtggcaagtttacaatactcttggaggcagccatggagtgcctagcgtgcattataaagggagggtaggagactattacgtaatggttatggacatgctagggcctagcttatgggatgtatggaattcctctgggcaggcgatgtctgcagaaatggtagcatgtattgcagttgagtctctgtcaattttaagcataatgcatgcacaaggttatgtgcatggagatgtaaagccagagaactttttgcttggtcagccatcaactctgcaggagaagaagttgttccttgtcgacttgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="99647" stop="103096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99947" g_stop="100073" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100074" i_stop="100183" i_length="110">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100184" g_stop="100257" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="201" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100258" i_stop="100342" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100343" g_stop="100412" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="271" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100413" i_stop="102274" i_length="1862">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102275" g_stop="102330" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="327" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102331" i_stop="102485" i_length="155">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102486" g_stop="102557" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="399" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102558" i_stop="102704" i_length="147">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102705" g_stop="102796" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="491" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E249027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99947" e_stop="100073"/>
          <exon e_start="100184" e_stop="100257"/>
          <exon e_start="100343" e_stop="100412"/>
          <exon e_start="102275" e_stop="102330"/>
          <exon e_start="102486" e_stop="102557"/>
          <exon e_start="102705" e_stop="102796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAGGTATGTGCTTGGTCTCCCCCTTCCCCTCTCACTGCCTATGCTAGACAATTTGTTTTCCACAAGTAATATTAGGGGATTTTACTCTCACTGGTTTATCTTTATGGCTCCAGGTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAAGTATGGATATGGACCTCTTTTGGAGTGAATGGGTGCTCATTTTAGAATATGATTCTAACTAGACTAAACTTGTTTTGTTGAGCAGTACTCTTGGAGGCAGCCATGGAGTGCCTAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACGTAATGGTATGTGTAGTAAAGTTATGTTTTTTTCCATTAAGTGTGTAGCAGAATTATGCTTCTGCCATTAATATTAATTGGTATAACCATTAAGATTGGTAAACTATAACTTTTAACAGTTAAGTTGGCGTTTGAGTCAAAAAGTCAAATTAGCTGTTGACTGGTGGAAATCAATGTCGCATCCCAAATGGATTATGCGTCCGGCACTAGTGCCTACCAACTTGCACTGAGCGCACTATTGTAGCATAATGCGTACCCCATCTTGTATCACATAATTCATTTCATTAAATTAATAACAACATTAATTATGGGAGAAATATAGTGAACTGCATTAACGATCAAGGTGGATCAAAGCGTAAACTAGACGTAAGTTGAAATGTCATTCACTATTCTGTATGAGTATCCATCACTCAGAAGTAATACAAATCGTTTATGGGGCCTTTATGATGCTACAAATGAATAATTAAGTTGCAAGGTTTGCCAGGGCTGCAAAAATATAGAACTAAAATTTAGTGATCCCACTAGTCCAAAAGTGGGCTCACCAAAAGAATTAAGTTGAACTCTAGCCTGTACGCTGGCAACCTTGCACTCGACTGTTTCCTAAACCTAAACAAATGATGCCTAAGTATTGAAATACTTAGATATGCGTCATAGCCAAACCAGTCATGGTTGGTCAAGAGTTATGCAAACAAAATATATAATAAATGCATAAAAGGAAATAAGTCAAATTGGGATTAGCTCATCAGTTCATTTAGTAAAAACATTTCTATTATCAATCAGTGAATAAAATCATTTCAATTGACATAACAATTTATAAAAGCATCAATTATGTATCAAGACATCTATAGGACCATTTAGTGTGGCAACTACATCTTTGTTTAGAATGTGAATTTAACAAAGAGACATGAACAAAGACTTTTATTCTTTGAGAATATATTTATGACACAAGATTTAAATTTTATGTTGAGTCCCACTTAATGAGAATATGCTGATTTTTTAAATTTCCCTTTCTTGACCAAATTAAAATTTTATAAGCGCAAGTCTTGTCATCCCCAATTTTCATCCTCCTTGCCGTAACTCTCTTTGCATAACCCCATTTTCTTTTTAGCTTATATAACATTGTATTATTGGCATAAAATTCGTCTCATGCTTGTATGTGCCTATAACTTTGCCAATTCATTTGCAATTTTGGTGTCATGGGGTTCGGCCCCTGCACCCCATAAATTTCCAATTCTTTGCCCCTTTTTTGTTTCCATTTCCATTTTCAATACAAGTAAATTTTCAGACTCCATATATGTACTCCTGGCCAATTATATCAGTATTAACATGTCCGTTATAATGTTTTTCTCAAGCATCGTCGTTGCGCAAACAATAATTCAAATATTTATTAGCGCGCTTCAAGGTATTGCAACTTGGTTGACTTTTTAGAAGTGCTATACTCAGGAAGGTTTCTGCATTGAAATGTTGAACTAGAAGGGAGTTGTTTTGAAATATGACGATCTGTGTGGGAGGTCAGTGGAGTTGACCCACATTATTTTGGTTTCAATGGAGACCCTCAGGTGCTTTTTTGACTGGTTGGTATGTTACTGAATGCCCTTTCAGGGATGACTGGTAAGAGTGGTTTCTTGAACTGTGACTTGGACAGTTTCTTTGCTATGAGAAGTCATAGGTTCTTGGATAGACTGATTCTTTCTTTTTAATATTTTTTTTTGGATGAGATACTTGTTTTGGACTGAGCCTTTGCTTTGCTTGCAGTTAGTACTGCTACTGTTAGATTATTTTGAAGATTGTGATACTGGTTCATGCATTTTTTATGTTGTGTTCATGTAAGGATGGATGACACCTATTGACCACATTAGTCTATGCAGGTTATGGACATGCTAGGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGCGTAAGTGTCTAAATGTTTAGTTCCTCAGCAAGCTCATTTTTCCTCCATTATCATGCATGCCATTAACTTTTCTTTGTATAGATAATATTCAGATGTGATGTTGGACTTCAAGCAATAGAAGGTAAGATCTTAACTATGCTTTTCTATTATTGCAGGATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGGGTATGGAATGCTCTCTTCTTGTTACTACTACTGTTATTATGTCCAATCTAGTTGTCCGGCTGCTGGTTTAATAATTTATGTTACTGCTTTTGAACTTTACTGATAGATGCTAGTATCTTTTCTATTGATTGTTGTTCTCGGCCACAGTTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGAC</genome_strand>
        <mrna_strand>GAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAG..............................................................................................................GTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAA.....................................................................................TACTCTTGGAGGCAGCCATGGAGTGCCTAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACGTAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGC...........................................................................................................................................................GATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGG...................................................................................................................................................TTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248014" ref_strand="+" ref_description="SGN-E248014 [cLEF-47-E24]">
      <seq>tttttgcttggtcagccatcaactctgcaggagaagaaggggttccttgtcgacttgggactagcaacaaagtggagagagaatgtgaaaggtccgcatgtggtatatgatcagcgacctgacatgtttagagggactgttcggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataaggccaatcaacactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102436" stop="103782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102736" g_stop="102799" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102800" i_stop="102882" i_length="83">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102883" g_stop="102949" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="131" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102950" i_stop="103035" i_length="86">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103036" g_stop="103165" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="261" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103166" i_stop="103274" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103275" g_stop="103482" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="468" r_length="207" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E248014" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102736" e_stop="102799"/>
          <exon e_start="102883" e_stop="102949"/>
          <exon e_start="103036" e_stop="103165"/>
          <exon e_start="103275" e_stop="103482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGACTAGGTAATAGCATTTATTTTACTATAATATCGTAGTGATTATAGATTCAGTATTCCGTTAATCTTTTCCAAACTACCAAATTACAGCAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAGGTCAGTTCTATATAGTGTTATCCTTAACCATAATTTTGATCATTGCCACTTGTTCTGCTTATCAACCTTTTGTGAATGGCTTCTAGAGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACCGAT</genome_strand>
        <mrna_strand>TTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGGGGTTCCTTGTCGACTTGGGACTAG...................................................................................CAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAG......................................................................................AGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCT-CCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264944" ref_strand="+" ref_description="SGN-E264944 [cLEI-10-H1]">
      <seq>tttagagggactgttcggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataaggccaatcaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatgtagaggagggggaagagcagcctataaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttacaatgctaggaagcccatgaaacagaggtaccattataatgtaacagatacaagactagcagagcatgtggagaaagggactgaagatggattatacataagttgtgtggcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102731" stop="103797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102945" g_stop="102949" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102950" i_stop="103035" i_length="86">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103036" g_stop="103165" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="135" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103166" i_stop="103274" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103275" g_stop="103495" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="354" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103496" i_stop="103587" i_length="92">
            <donor d_prob="0.204" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103588" g_stop="103797" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="553" r_length="199" r_score="0.713"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E264944" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102945" e_stop="102949"/>
          <exon e_start="103036" e_stop="103165"/>
          <exon e_start="103275" e_stop="103495"/>
          <exon e_start="103588" e_stop="103797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGTCAGTTCTATATAGTGTTATCCTTAACCATAATTTTGATCATTGCCACTTGTTCTGCTTATCAACCTTTTGTGAATGGCTTCTAGAGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACCGATGGGGCCCAAAAAGGTGGTAATTTACATGTCTCCCCAAACTGGCCTATTTACTTCGACCTTCCTGGTGTTGGGCTATAAAAATCCCCATCATGCTAATAATTGCAAATTCCTTCAAGTGGGCCAAAAACCGGGGGGAAATAAATTGTAAAAGGAAGGGGGAAAAAAAACCCTAAAAAAGAAGGGTACGCACCCCGAGTTTCCGCCAACCACGCTGATTTTCATTTACCAATGCCATGGAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TTTAG......................................................................................AGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCT-CCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCC-AAAAG............................................................................................ATT-CTTCAAGTTGGCC-AAAAGC-GGGGGAGATTAAATGT-AGAGG-AGGGGG-AAGAGCAGCCT-ATAAAGAA-GGTTCGCA-TCGGAG-TTCCTGCATCACAGTGGATTTCGATTTA-CAATGCTAGGAAGCCCATGAAACAGAGGTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257265" ref_strand="+" ref_description="SGN-E257265 [cLEG-46-O11]">
      <seq>ttcggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataaggccaatcaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatgtagaggagggggaagagcagcctagaaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttancatgctaggaagcccatgaaacagaggtaccattantatgtaacagatacaagactagcagagcatgtggagaaagggactgaagatggattataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102744" stop="103797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103044" g_stop="103165" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103166" i_stop="103274" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103275" g_stop="103495" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="341" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103496" i_stop="103587" i_length="92">
            <donor d_prob="0.204" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103588" g_stop="103797" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="540" r_length="199" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E257265" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103044" e_stop="103165"/>
          <exon e_start="103275" e_stop="103495"/>
          <exon e_start="103588" e_stop="103797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACCGATGGGGCCCAAAAAGGTGGTAATTTACATGTCTCCCCAAACTGGCCTATTTACTTCGACCTTCCTGGTGTTGGGCTATAAAAATCCCCATCATGCTAATAATTGCAAATTCCTTCAAGTGGGCCAAAAACCGGGGGGAAATAAATTGTAAAAGGAAGGGGGAAAAAAAACCCTAAAAAAGAAGGGTACGCACCCCGAGTTTCCGCCAACCACGCTGATTTTCATTTACCAATGCCATGGAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCT-CCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCC-AAAAG............................................................................................ATT-CTTCAAGTTGGCC-AAAAGC-GGGGGAGATTAAATGT-AGAGG-AGGGGG-AAGAGCAGCCT-AGAAAGAA-GGTTCGCA-TCGGAG-TTCCTGCATCACAGTGGATTTCGATTTANC-ATGCTAGGAAGCCCATGAAACAGAGGTACCATTANTATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264200" ref_strand="+" ref_description="SGN-E264200 [cLEG-64-P10]">
      <seq>ttcggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgctataaggccaatcaacactgatggtgcccaaaagattcttcaagttggccaaaagcgggggagattaaatgtagagggagggggaagagcagcctagaaagaaggttcgcatcggagttcctgcatcacagtggatttcgatttacaatgctaggaagcccatgaaacagaggtaccattataatgtaacagatacaagactagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102744" stop="103797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103044" g_stop="103165" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103166" i_stop="103274" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103275" g_stop="103495" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="341" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103496" i_stop="103587" i_length="92">
            <donor d_prob="0.204" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103588" g_stop="103770" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="514" r_length="173" r_score="0.713"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E264200" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103044" e_stop="103165"/>
          <exon e_start="103275" e_stop="103495"/>
          <exon e_start="103588" e_stop="103770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACCGATGGGGCCCAAAAAGGTGGTAATTTACATGTCTCCCCAAACTGGCCTATTTACTTCGACCTTCCTGGTGTTGGGCTATAAAAATCCCCATCATGCTAATAATTGCAAATTCCTTCAAGTGGGCCAAAAACCGGGGGGAAATAAATTGTAAAAGGAAGGGGGAAAAAAAACCCTAAAAAAGAAGGGTACGCACCCCGAGTTTCCGCCAACCACGCTGATTTTCATTTACCAATGCCATGGAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCT-CCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACTGATGGTGCCC-AAAAG............................................................................................ATT-CTTCAAGTTGGCC-AAAAGC-GGGGGAGATTAAATGT-AGAGGGAGGGGG-AAGAGCAGCCT-AGAAAGAA-GGTTCGCA-TCGGAG-TTCCTGCATCACAGTGGATTTCGATTTA-CAATGCTAGGAAGCCCATGAAACAGAGGTACCATTATAATGTAACAGATACAAGACTAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264236" ref_strand="+" ref_description="SGN-E264236 [cLEG-70-O20]">
      <seq>cggtatgcaagtgctcatgcacacttgggaaggactgccagtagaagagatgatctggaatcacttgcatatacactcatttttcttcacagaggcaggttgccatggcaaggatttcagggagataacaaatcgtttttggtctgcaaaaagaagatggcaacatctccagaaatgctttgctgtttctgtccatcacctctgagagaatttcttgatatagtaataaacatgaaatttgatgaagaacctaattattcgaagttaatctccttatttgggagcttgcttggacctgatcctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0004A15-0pSkP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0004A15.1" temp_strand="+" temp_description="C12HBa0004A15.1  AC217494.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0004A15 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102746" stop="103762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103046" g_stop="103165" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103166" i_stop="103274" i_length="109">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103275" g_stop="103462" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="307" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0004A15.1" gen_strand="+" ref_id="SGN-E264236" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0004A15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103046" e_stop="103165"/>
          <exon e_start="103275" e_stop="103462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAGGTATCTGTACTAGCTTTTCTCGAGTTTTATGAACTGCAGTGCAGTCAAGTTGTTCCTGTCAACTTCCATGTCATCCTATTCTCACAATTTTTTGTTCTGAACATCTTAGGGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTA</genome_strand>
        <mrna_strand>CGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG.............................................................................................................GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCT-CCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>106</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4250" PGL_stop="1345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4250" e_stop="4197"/>
            <exon e_start="4028" e_stop="3817"/>
            <exon e_start="3731" e_stop="3499"/>
            <exon e_start="3428" e_stop="3209"/>
            <exon e_start="3126" e_stop="2745"/>
            <exon e_start="2671" e_stop="2564"/>
            <exon e_start="2424" e_stop="2221"/>
            <exon e_start="2126" e_stop="2025"/>
            <exon e_start="1938" e_stop="1765"/>
            <exon e_start="1680" e_stop="1345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.561" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.553" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4250" e_stop="4197" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.680">
            <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4028" e_stop="3817" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.561">
            <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3731" e_stop="3499" e_length="233"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.553">
            <gDNA_intron_boundary i_start="3498" i_stop="3429" i_length="70"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3428" e_stop="3209" e_length="220"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.890">
            <gDNA_intron_boundary i_start="3208" i_stop="3127" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3126" e_stop="2745" e_length="382"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.939">
            <gDNA_intron_boundary i_start="2744" i_stop="2672" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2671" e_stop="2564" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="2563" i_stop="2425" i_length="139"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2424" e_stop="2221" e_length="204"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="2220" i_stop="2127" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="2126" e_stop="2025" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.713" acc_prob="0.998">
            <gDNA_intron_boundary i_start="2024" i_stop="1939" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="1938" e_stop="1765" e_length="174"/>
          </exon>
          <intron i_serial="9" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1764" i_stop="1681" i_length="84"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="1680" e_stop="1345" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4250" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4250" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4249" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3209"/>
              <exon start="3126" stop="3101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4248" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3209"/>
              <exon start="3126" stop="3109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4248" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4246" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4244" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4228" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3903" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3209"/>
              <exon start="3126" stop="3061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3366" stop="3209"/>
              <exon start="3126" stop="2745"/>
              <exon start="2671" stop="2659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3285" stop="3209"/>
              <exon start="3126" stop="2745"/>
              <exon start="2671" stop="2564"/>
              <exon start="2424" stop="2347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3263" stop="3209"/>
              <exon start="3126" stop="2745"/>
              <exon start="2671" stop="2564"/>
              <exon start="2424" stop="2248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3043" stop="2745"/>
              <exon start="2671" stop="2564"/>
              <exon start="2424" stop="2276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2835" stop="2745"/>
              <exon start="2671" stop="2564"/>
              <exon start="2424" stop="2221"/>
              <exon start="2126" stop="2025"/>
              <exon start="1938" stop="1854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2362" stop="2221"/>
              <exon start="2126" stop="2025"/>
              <exon start="1938" stop="1765"/>
              <exon start="1680" stop="1375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2324" stop="2221"/>
              <exon start="2126" stop="2025"/>
              <exon start="1938" stop="1765"/>
              <exon start="1680" stop="1345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2311" stop="2221"/>
              <exon start="2126" stop="2025"/>
              <exon start="1938" stop="1765"/>
              <exon start="1680" stop="1675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1857" stop="1765"/>
              <exon start="1680" stop="1416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206213" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG : TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG : GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG : CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTC : GTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA : TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG : GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG : GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG : ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAG : AACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATAAGGATCCATTTTTCATTACAAAAATCAACT</gDNA_template>
            <first_frame> S  K  P  G  I  L  S  E  W  P  W  A  N  L  G  N  F  K  :  Y  L  V  L  A  P  F  V  G  H  S  I  Y  S  F  L  R  D  G  D  I  G  Y  I  A  I  L  P  F  L  L  F  R  F  I  H  N  Q  I  W  I  S  L  S  R  H  R  T  A  K  G  N  N  R  I  V  D  R  S  I  E  F  D  Q  V  D  R  E  N  N  W :   D  D  Q  I  I  F  N  G  L  L  Y  Y  V  G  Y  L  R  M  E  Q  V  H  H  L  P  L  W  R  S  G  G  F  I  V  T  A  L  A  H  I  G  P  V  E  F  I  Y  Y  W  F  H  R  A  L  H  H  H  F  L  Y  S  R  Y  H  S  H  H  H  S  S  I  V  T  Q  P  I  S   : A  F  I  H  P  F  A  E  V  A  S  Y  Y  A  I  F  A  V  P  V  I  A  T  E  L  T  G  T  T  S  I  A  T  I  T  L  Y  V  I  F  T  D  F  M  N  N  L  G  H  C  N  F  E  V  I  P  K  W  I  F  S  L  F  P  P  L  K  Y  L  I  Y  T  S  S :   Y  H  S  L  H  H  T  Q  F  R  T  N  Y  S  L  F  M  P  I  Y  D  Y  I  F  G  T  M  D  K  S  S  D  T  L  Y  E  K  S  L  E  K  K  A  E  L  P  H  V  V  H  L  T  H  L  T  T  L  Q  S  I  Y  H  L  R  L  G  F  S  S  L  A  S  K  P  H  M  T  S  S  K  W  Y  L  W  L  M  W  P  V  T  L  W  S  I  L  I  T  W  I  Y  S  H  T  F  V  I  E  R  N  L  F  K  D  L  K  L  Q  T  W  A  I  P  K  F  R  K  Q  :  Y  F  S  Q  W  Q  R  K  S  I  N  N  L  I  K  E  A  I  M  E  A  D  Q  K  G  V  K  V  L  S  L  G  L  L  N  Q  :  D  E  K  L  N  N  N  G  E  I  C  I  R  K  H  P  E  L  K  V  K  L  V  D  G  S  S  L  V  V  A  V  V  L  N  S  I  P  K  G  T  S  Q  V  V  L  Q  A  G  R  L  S  K  V  A  N  A  I  A  L  A  L  C  Q  R  G  I  Q  :  V  I  T  L  D  E  E  E  Y  K  G  L  K  A  R  F  T  P  E  A  A  A  N  L  V  L  L  K  S  T  C  V  S  K  :  T  W  L  V  D  D  G  L  S  E  D  E  Q  L  K  A  P  K  G  T  L  F  I  P  Y  S  P  F  P  P  K  K  V  R  E  D  C  F  Y  L  S  T  P  A  M  I  C  P  K  H  V  Q  N  V  D  S  C  E  :  N  W  L  P  R  R  V  M  S  A  S  R  I  A  G  I  L  H  A  F  E  G  W  N  E  H  E  C  G  D  M  M  F  D  I  D  K  V  W  K  A  S  L  D  H  G  F  S  P  L  D  V  E  I  M  *  I  I  I  L  *  D  H  S  Y  K  L  V  I  M  V  N  N  S  *  Q  L  N  G  L  Y  Y  M  *  *  I  T  F  D  K  F  K  R  P  L  L  P  K  H  K  H  I  R  I  H  F  S  L  Q  K  S  T </first_frame>
            <second_frame>  L  N  L  E  F  S  Q  N  G  H  G  Q  T  L  A  T  L  S :   T  W  C  W  H  H  L  L  V  I  A  Y  T  H  S  *  G  M  E  I  L  D  T  *  P  Y  F  H  F  Y  S  S  D  L  F  T  T  R  Y  G  Y  R  Y  R  A  T  G  L  L  R  V  I  I  E  L  L  I  E  A  L  S  L  I  K  L  I  E  K  T  T   : G  M  I  K  L  Y  L  T  G  Y  Y  T  M  L  D  T  *  E  W  N  K  F  I  T  C  L  Y  G  E  V  V  D  S  L  *  L  H  W  P  I  L  V  L  L  S  L  S  I  I  G  F  I  E  L  C  I  T  I  F  S  I  R  V  I  I  L  I  I  T  P  L  L  L  L  N  L  S  V  :  H  L  F  I  R  L  L  R  S  H  H  I  M  P  S  L  L  F  L  *  S  Q  L  N  S  L  G  L  L  L  *  L  Q  S  L  F  M  L  S  L  L  I  S  *  T  T  W  A  I  V  T  L  R  *  F  Q  S  G  S  S  L  C  F  H  L  S  S  T  *  Y  I  R  P   : R  T  T  H  Y  I  T  R  N  S  E  L  I  I  L  F  S  C  Q  Y  M  T  I  F  L  V  Q  W  T  S  P  V  T  H  C  M  K  S  H  L  R  K  K  R  N  C  L  M  W  F  T  L  H  I  *  Q  P  Y  N  P  S  I  I  S  V  *  D  F  H  R  W  P  Q  S  L  T  *  L  A  L  S  G  I  C  G  *  C  G  L  S  R  Y  G  Q  Y  S  L  L  G  F  I  V  T  H  L  L  S  R  G  I  C  S  R  I  S  N  Y  K  L  G  L  F  Q  S  F  A  N  N :   T  L  V  N  G  K  E  R  V  L  I  I  *  S  R  K  P  S  W  K  Q  I  R  K  A  *  R  F  *  A  S  D  S  *  I  R :   T  R  S  *  I  T  M  V  K  F  A  *  G  S  I  L  S  *  K  L  N  W  *  M  E  V  A  *  L  L  L  W  F  S  T  P  F  L  K  E  L  P  K  W  Y  Y  K  L  V  V  C  P  K  L  L  M  L  L  P  S  P  C  V  N  E  E  F  R :   L  S  R  *  T  K  K  S  T  R  D  L  K  Q  G  L  P  L  R  L  Q  L  I  W  S  C  *  K  V  L  V  F  Q  R :   R  G  *  *  M  M  D  *  V  K  M  N  N  *  K  H  Q  K  E  H  C  L  F  L  I  H  H  F  H  Q  R  K  F  V  R  I  A  S  T  *  A  H  Q  P  *  F  V  Q  N  M  F  K  M  *  T  L  V  R :   T  G  C  Q  E  E  *  *  V  H  R  E  *  L  E  F  C  T  R  L  K  V  G  T  S  T  S  V  V  T  *  C  L  I  L  T  K  Y  G  K  L  V  L  I  M  V  F  H  H  *  M  *  K  *  C  R  L  L  F  C  K  I  T  V  I  S  L  *  *  W  L  I  I  P  S  N  S  M  A  C  T  I  C  N  K  *  L  L  T  N  L  K  D  H  Y  Y  L  N  T  N  I  *  G  S  I  F  H  Y  K  N  Q   </second_frame>
            <third_frame>   *  T  W  N  S  L  R  M  A  M  G  K  P  W  Q  L  *   : V  L  G  V  G  T  I  C  W  S  *  H  I  L  I  L  E  G  W  R  Y  W  I  H  S  H  T  S  I  S  T  L  Q  I  Y  S  Q  P  D  M  D  I  V  I  A  P  Q  D  C  *  G  *  *  *  N  C  *  *  K  H  *  V  *  S  S  *  *  R  K  Q  L  :  G  *  S  N  Y  I  *  R  A  I  I  L  C  W  I  P  E  N  G  T  S  S  S  L  A  S  M  E  K  W  W  I  H  C  N  C  I  G  P  Y  W  S  C  *  V  Y  L  L  L  V  S  *  S  S  A  S  P  F  S  L  F  A  L  S  F  S  S  S  L  L  Y  C  Y  S  T  Y  Q  C :   I  Y  S  S  V  C  *  G  R  I  I  L  C  H  L  C  C  S  C  N  R  N  *  T  H  W  D  Y  F  Y  S  Y  N  H  S  L  C  Y  L  Y  *  F  H  E  Q  L  G  P  L  *  L  *  G  D  S  K  V  D  L  L  S  V  S  T  S  Q  V  L  D  I  Y  V  L  :  V  P  L  T  T  S  H  A  I  Q  N  *  L  F  S  F  H  A  N  I  *  L  Y  F  W  Y  N  G  Q  V  Q  *  H  I  V  *  K  V  T  *  E  K  S  G  T  A  S  C  G  S  P  Y  T  S  N  N  L  T  I  H  L  S  S  P  S  R  I  F  I  V  G  L  K  A  S  H  D  *  L  *  V  V  F  V  V  N  V  A  C  H  A  M  V  N  T  H  Y  L  D  L  *  S  H  I  C  Y  R  E  E  F  V  Q  G  S  Q  I  T  N  L  G  Y  S  K  V  S  Q  T   : I  L  *  S  M  A  K  K  E  Y  *  *  F  D  Q  G  S  H  H  G  S  R  S  E  R  R  K  G  F  E  P  R  T  L  K  S   : G  R  E  V  E  *  Q  W  *  N  L  H  K  E  A  S  *  A  E  S  *  I  G  R  W  K  *  P  S  C  C  C  G  S  Q  L  H  S  *  R  N  F  P  S  G  I  T  S  W  S  F  V  Q  S  C  *  C  Y  C  P  R  L  V  S  T  R  N  S   : G  Y  H  V  R  R  R  R  V  Q  G  T  *  S  K  V  Y  P  *  G  C  S  *  F  G  L  V  E  K  Y  L  C  F  K   : D  V  V  S  R  *  W  I  E  *  R  *  T  I  E  S  T  K  R  N  I  V  Y  S  L  F  T  I  S  T  K  E  S  S  *  G  L  L  L  L  E  H  T  S  H  D  L  S  K  T  C  S  K  C  R  L  L  *   : E  L  A  A  K  K  S  D  E  C  I  E  N  S  W  N  F  A  R  V  *  R  L  E  R  A  R  V  W  *  H  D  V  *  Y  *  Q  S  M  E  S  *  S  *  S  W  F  F  T  I  R  C  R  N  N  V  D  Y  Y  F  V  R  S  Q  L  *  A  C  N  N  G  *  *  F  L  A  T  Q  W  P  V  L  Y  V  I  N  N  F  *  Q  I  *  K  T  I  I  T  *  T  Q  T  Y  K  D  P  F  F  I  T  K  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4250" stop="4197"/>
                    <exon start="4028" stop="3817"/>
                    <exon start="3731" stop="3499"/>
                    <exon start="3428" stop="3209"/>
                    <exon start="3126" stop="2745"/>
                    <exon start="2671" stop="2564"/>
                    <exon start="2424" stop="2221"/>
                    <exon start="2126" stop="2025"/>
                    <exon start="1938" stop="1765"/>
                    <exon start="1680" stop="1513"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1854</number_coding_nucleotides>
                  <number_encoded_amino_acids>618</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKPGILSEWPWANLGNFKYLVLAPFVGHSIYSFLRDGDIGYIAILPFLLFRFIHNQIWISLSRHRTAKGNNRIVDRSIEFDQVDRENNWDDQIIFNGLLYYVGYLRMEQVHHLPLWRSGGFIVTALAHIGPVEFIYYWFHRALHHHFLYSRYHSHHHSSIVTQPISAFIHPFAEVASYYAIFAVPVIATELTGTTSIATITLYVIFTDFMNNLGHCNFEVIPKWIFSLFPPLKYLIYTSSYHSLHHTQFRTNYSLFMPIYDYIFGTMDKSSDTLYEKSLEKKAELPHVVHLTHLTTLQSIYHLRLGFSSLASKPHMTSSKWYLWLMWPVTLWSILITWIYSHTFVIERNLFKDLKLQTWAIPKFRKQYFSQWQRKSINNLIKEAIMEADQKGVKVLSLGLLNQDEKLNNNGEICIRKHPELKVKLVDGSSLVVAVVLNSIPKGTSQVVLQAGRLSKVANAIALALCQRGIQVITLDEEEYKGLKARFTPEAAANLVLLKSTCVSKTWLVDDGLSEDEQLKAPKGTLFIPYSPFPPKKVREDCFYLSTPAMICPKHVQNVDSCENWLPRRVMSASRIAGILHAFEGWNEHECGDMMFDIDKVWKASLDHGFSPLDVEIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4250" e_stop="4197"/>
            <exon e_start="4028" e_stop="3817"/>
            <exon e_start="3731" e_stop="3499"/>
            <exon e_start="3428" e_stop="2745"/>
            <exon e_start="2671" e_stop="2564"/>
            <exon e_start="2424" e_stop="2221"/>
            <exon e_start="2126" e_stop="2025"/>
            <exon e_start="1938" e_stop="1765"/>
            <exon e_start="1680" e_stop="1345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.561" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.553" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4250" e_stop="4197" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.680">
            <gDNA_intron_boundary i_start="4196" i_stop="4029" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4028" e_stop="3817" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.561">
            <gDNA_intron_boundary i_start="3816" i_stop="3732" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3731" e_stop="3499" e_length="233"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.553">
            <gDNA_intron_boundary i_start="3498" i_stop="3429" i_length="70"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3428" e_stop="2745" e_length="684"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.939">
            <gDNA_intron_boundary i_start="2744" i_stop="2672" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2671" e_stop="2564" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="2563" i_stop="2425" i_length="139"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2424" e_stop="2221" e_length="204"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="2220" i_stop="2127" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2126" e_stop="2025" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.713" acc_prob="0.998">
            <gDNA_intron_boundary i_start="2024" i_stop="1939" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="1938" e_stop="1765" e_length="174"/>
          </exon>
          <intron i_serial="8" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1764" i_stop="1681" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="1680" e_stop="1345" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4250" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4250" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4248" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4246" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4244" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3499"/>
              <exon start="3428" stop="3303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4228" stop="4197"/>
              <exon start="4028" stop="3817"/>
              <exon start="3731" stop="3538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3268" stop="2816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3043" stop="2745"/>
              <exon start="2671" stop="2564"/>
              <exon start="2424" stop="2276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2835" stop="2745"/>
              <exon start="2671" stop="2564"/>
              <exon start="2424" stop="2221"/>
              <exon start="2126" stop="2025"/>
              <exon start="1938" stop="1854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2362" stop="2221"/>
              <exon start="2126" stop="2025"/>
              <exon start="1938" stop="1765"/>
              <exon start="1680" stop="1375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2324" stop="2221"/>
              <exon start="2126" stop="2025"/>
              <exon start="1938" stop="1765"/>
              <exon start="1680" stop="1345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2311" stop="2221"/>
              <exon start="2126" stop="2025"/>
              <exon start="1938" stop="1765"/>
              <exon start="1680" stop="1675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1857" stop="1765"/>
              <exon start="1680" stop="1416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206213" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTAAACCTGGAATTCTCTCAGAATGGCCATGGGCAAACCTTGGCAACTTTAAG : TACTTGGTGTTGGCACCATTTGTTGGTCATAGCATATACTCATTCTTGAGGGATGGAGATATTGGATACATAGCCATACTTCCATTTCTACTCTTCAGATTTATTCACAACCAGATATGGATATCGTTATCGCGCCACAGGACTGCTAAGGGTAATAATAGAATTGTTGATAGAAGCATTGAGTTTGATCAAGTTGATAGAGAAAACAACTG : GGATGATCAAATTATATTTAACGGGCTATTATACTATGTTGGATACCTGAGAATGGAACAAGTTCATCACTTGCCTCTATGGAGAAGTGGTGGATTCATTGTAACTGCATTGGCCCATATTGGTCCTGTTGAGTTTATCTATTATTGGTTTCATAGAGCTCTGCATCACCATTTTCTCTATTCGCGTTATCATTCTCATCATCACTCCTCTATTGTTACTCAACCTATCAGTG : CATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA : TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG : GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG : GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG : ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAG : AACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATAAGGATCCATTTTTCATTACAAAAATCAACT</gDNA_template>
            <first_frame> S  K  P  G  I  L  S  E  W  P  W  A  N  L  G  N  F  K  :  Y  L  V  L  A  P  F  V  G  H  S  I  Y  S  F  L  R  D  G  D  I  G  Y  I  A  I  L  P  F  L  L  F  R  F  I  H  N  Q  I  W  I  S  L  S  R  H  R  T  A  K  G  N  N  R  I  V  D  R  S  I  E  F  D  Q  V  D  R  E  N  N  W :   D  D  Q  I  I  F  N  G  L  L  Y  Y  V  G  Y  L  R  M  E  Q  V  H  H  L  P  L  W  R  S  G  G  F  I  V  T  A  L  A  H  I  G  P  V  E  F  I  Y  Y  W  F  H  R  A  L  H  H  H  F  L  Y  S  R  Y  H  S  H  H  H  S  S  I  V  T  Q  P  I  S   : A  F  I  H  P  F  A  E  V  A  S  Y  Y  A  I  F  A  V  P  V  I  A  T  E  L  T  G  T  T  S  I  A  T  I  T  L  Y  V  I  F  T  D  F  M  N  N  L  G  H  C  N  F  E  V  I  P  K  W  I  F  S  L  F  P  P  L  K  Y  L  I  Y  T  S  S  *  V  I  F  L  P  L  P  T  H  I  L  S  D  E  F  L  H  Y  H  N  L  S  M  S  L  Q  V  P  L  T  T  S  H  A  I  Q  N  *  L  F  S  F  H  A  N  I  *  L  Y  F  W  Y  N  G  Q  V  Q  *  H  I  V  *  K  V  T  *  E  K  S  G  T  A  S  C  G  S  P  Y  T  S  N  N  L  T  I  H  L  S  S  P  S  R  I  F  I  V  G  L  K  A  S  H  D  *  L  *  V  V  F  V  V  N  V  A  C  H  A  M  V  N  T  H  Y  L  D  L  *  S  H  I  C  Y  R  E  E  F  V  Q  G  S  Q  I  T  N  L  G  Y  S  K  V  S  Q  T   : I  L  *  S  M  A  K  K  E  Y  *  *  F  D  Q  G  S  H  H  G  S  R  S  E  R  R  K  G  F  E  P  R  T  L  K  S   : G  R  E  V  E  *  Q  W  *  N  L  H  K  E  A  S  *  A  E  S  *  I  G  R  W  K  *  P  S  C  C  C  G  S  Q  L  H  S  *  R  N  F  P  S  G  I  T  S  W  S  F  V  Q  S  C  *  C  Y  C  P  R  L  V  S  T  R  N  S   : G  Y  H  V  R  R  R  R  V  Q  G  T  *  S  K  V  Y  P  *  G  C  S  *  F  G  L  V  E  K  Y  L  C  F  K   : D  V  V  S  R  *  W  I  E  *  R  *  T  I  E  S  T  K  R  N  I  V  Y  S  L  F  T  I  S  T  K  E  S  S  *  G  L  L  L  L  E  H  T  S  H  D  L  S  K  T  C  S  K  C  R  L  L  *   : E  L  A  A  K  K  S  D  E  C  I  E  N  S  W  N  F  A  R  V  *  R  L  E  R  A  R  V  W  *  H  D  V  *  Y  *  Q  S  M  E  S  *  S  *  S  W  F  F  T  I  R  C  R  N  N  V  D  Y  Y  F  V  R  S  Q  L  *  A  C  N  N  G  *  *  F  L  A  T  Q  W  P  V  L  Y  V  I  N  N  F  *  Q  I  *  K  T  I  I  T  *  T  Q  T  Y  K  D  P  F  F  I  T  K  I  N  </first_frame>
            <second_frame>  L  N  L  E  F  S  Q  N  G  H  G  Q  T  L  A  T  L  S :   T  W  C  W  H  H  L  L  V  I  A  Y  T  H  S  *  G  M  E  I  L  D  T  *  P  Y  F  H  F  Y  S  S  D  L  F  T  T  R  Y  G  Y  R  Y  R  A  T  G  L  L  R  V  I  I  E  L  L  I  E  A  L  S  L  I  K  L  I  E  K  T  T   : G  M  I  K  L  Y  L  T  G  Y  Y  T  M  L  D  T  *  E  W  N  K  F  I  T  C  L  Y  G  E  V  V  D  S  L  *  L  H  W  P  I  L  V  L  L  S  L  S  I  I  G  F  I  E  L  C  I  T  I  F  S  I  R  V  I  I  L  I  I  T  P  L  L  L  L  N  L  S  V  :  H  L  F  I  R  L  L  R  S  H  H  I  M  P  S  L  L  F  L  *  S  Q  L  N  S  L  G  L  L  L  *  L  Q  S  L  F  M  L  S  L  L  I  S  *  T  T  W  A  I  V  T  L  R  *  F  Q  S  G  S  S  L  C  F  H  L  S  S  T  *  Y  I  R  P  R  E  *  S  S  Y  L  S  L  H  I  Y  S  L  T  N  F  Y  T  I  T  T  C  R  C  H  C  R  Y  H  S  L  H  H  T  Q  F  R  T  N  Y  S  L  F  M  P  I  Y  D  Y  I  F  G  T  M  D  K  S  S  D  T  L  Y  E  K  S  L  E  K  K  A  E  L  P  H  V  V  H  L  T  H  L  T  T  L  Q  S  I  Y  H  L  R  L  G  F  S  S  L  A  S  K  P  H  M  T  S  S  K  W  Y  L  W  L  M  W  P  V  T  L  W  S  I  L  I  T  W  I  Y  S  H  T  F  V  I  E  R  N  L  F  K  D  L  K  L  Q  T  W  A  I  P  K  F  R  K  Q  :  Y  F  S  Q  W  Q  R  K  S  I  N  N  L  I  K  E  A  I  M  E  A  D  Q  K  G  V  K  V  L  S  L  G  L  L  N  Q  :  D  E  K  L  N  N  N  G  E  I  C  I  R  K  H  P  E  L  K  V  K  L  V  D  G  S  S  L  V  V  A  V  V  L  N  S  I  P  K  G  T  S  Q  V  V  L  Q  A  G  R  L  S  K  V  A  N  A  I  A  L  A  L  C  Q  R  G  I  Q  :  V  I  T  L  D  E  E  E  Y  K  G  L  K  A  R  F  T  P  E  A  A  A  N  L  V  L  L  K  S  T  C  V  S  K  :  T  W  L  V  D  D  G  L  S  E  D  E  Q  L  K  A  P  K  G  T  L  F  I  P  Y  S  P  F  P  P  K  K  V  R  E  D  C  F  Y  L  S  T  P  A  M  I  C  P  K  H  V  Q  N  V  D  S  C  E  :  N  W  L  P  R  R  V  M  S  A  S  R  I  A  G  I  L  H  A  F  E  G  W  N  E  H  E  C  G  D  M  M  F  D  I  D  K  V  W  K  A  S  L  D  H  G  F  S  P  L  D  V  E  I  M  *  I  I  I  L  *  D  H  S  Y  K  L  V  I  M  V  N  N  S  *  Q  L  N  G  L  Y  Y  M  *  *  I  T  F  D  K  F  K  R  P  L  L  P  K  H  K  H  I  R  I  H  F  S  L  Q  K  S  T </second_frame>
            <third_frame>   *  T  W  N  S  L  R  M  A  M  G  K  P  W  Q  L  *   : V  L  G  V  G  T  I  C  W  S  *  H  I  L  I  L  E  G  W  R  Y  W  I  H  S  H  T  S  I  S  T  L  Q  I  Y  S  Q  P  D  M  D  I  V  I  A  P  Q  D  C  *  G  *  *  *  N  C  *  *  K  H  *  V  *  S  S  *  *  R  K  Q  L  :  G  *  S  N  Y  I  *  R  A  I  I  L  C  W  I  P  E  N  G  T  S  S  S  L  A  S  M  E  K  W  W  I  H  C  N  C  I  G  P  Y  W  S  C  *  V  Y  L  L  L  V  S  *  S  S  A  S  P  F  S  L  F  A  L  S  F  S  S  S  L  L  Y  C  Y  S  T  Y  Q  C :   I  Y  S  S  V  C  *  G  R  I  I  L  C  H  L  C  C  S  C  N  R  N  *  T  H  W  D  Y  F  Y  S  Y  N  H  S  L  C  Y  L  Y  *  F  H  E  Q  L  G  P  L  *  L  *  G  D  S  K  V  D  L  L  S  V  S  T  S  Q  V  L  D  I  Y  V  L  V  S  N  L  L  T  S  P  Y  T  Y  T  L  *  R  I  F  T  L  S  Q  P  V  D  V  T  A  G  T  T  H  Y  I  T  R  N  S  E  L  I  I  L  F  S  C  Q  Y  M  T  I  F  L  V  Q  W  T  S  P  V  T  H  C  M  K  S  H  L  R  K  K  R  N  C  L  M  W  F  T  L  H  I  *  Q  P  Y  N  P  S  I  I  S  V  *  D  F  H  R  W  P  Q  S  L  T  *  L  A  L  S  G  I  C  G  *  C  G  L  S  R  Y  G  Q  Y  S  L  L  G  F  I  V  T  H  L  L  S  R  G  I  C  S  R  I  S  N  Y  K  L  G  L  F  Q  S  F  A  N  N :   T  L  V  N  G  K  E  R  V  L  I  I  *  S  R  K  P  S  W  K  Q  I  R  K  A  *  R  F  *  A  S  D  S  *  I  R :   T  R  S  *  I  T  M  V  K  F  A  *  G  S  I  L  S  *  K  L  N  W  *  M  E  V  A  *  L  L  L  W  F  S  T  P  F  L  K  E  L  P  K  W  Y  Y  K  L  V  V  C  P  K  L  L  M  L  L  P  S  P  C  V  N  E  E  F  R :   L  S  R  *  T  K  K  S  T  R  D  L  K  Q  G  L  P  L  R  L  Q  L  I  W  S  C  *  K  V  L  V  F  Q  R :   R  G  *  *  M  M  D  *  V  K  M  N  N  *  K  H  Q  K  E  H  C  L  F  L  I  H  H  F  H  Q  R  K  F  V  R  I  A  S  T  *  A  H  Q  P  *  F  V  Q  N  M  F  K  M  *  T  L  V  R :   T  G  C  Q  E  E  *  *  V  H  R  E  *  L  E  F  C  T  R  L  K  V  G  T  S  T  S  V  V  T  *  C  L  I  L  T  K  Y  G  K  L  V  L  I  M  V  F  H  H  *  M  *  K  *  C  R  L  L  F  C  K  I  T  V  I  S  L  *  *  W  L  I  I  P  S  N  S  M  A  C  T  I  C  N  K  *  L  L  T  N  L  K  D  H  Y  Y  L  N  T  N  I  *  G  S  I  F  H  Y  K  N  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3200" stop="2745"/>
                    <exon start="2671" stop="2564"/>
                    <exon start="2424" stop="2221"/>
                    <exon start="2126" stop="2025"/>
                    <exon start="1938" stop="1765"/>
                    <exon start="1680" stop="1513"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1209</number_coding_nucleotides>
                  <number_encoded_amino_acids>403</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSYLSLHIYSLTNFYTITTCRCHCRYHSLHHTQFRTNYSLFMPIYDYIFGTMDKSSDTLYEKSLEKKAELPHVVHLTHLTTLQSIYHLRLGFSSLASKPHMTSSKWYLWLMWPVTLWSILITWIYSHTFVIERNLFKDLKLQTWAIPKFRKQYFSQWQRKSINNLIKEAIMEADQKGVKVLSLGLLNQDEKLNNNGEICIRKHPELKVKLVDGSSLVVAVVLNSIPKGTSQVVLQAGRLSKVANAIALALCQRGIQVITLDEEEYKGLKARFTPEAAANLVLLKSTCVSKTWLVDDGLSEDEQLKAPKGTLFIPYSPFPPKKVREDCFYLSTPAMICPKHVQNVDSCENWLPRRVMSASRIAGILHAFEGWNEHECGDMMFDIDKVWKASLDHGFSPLDVEIM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4250" stop="4197"/>
                    <exon start="4028" stop="3817"/>
                    <exon start="3731" stop="3499"/>
                    <exon start="3428" stop="3205"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKPGILSEWPWANLGNFKYLVLAPFVGHSIYSFLRDGDIGYIAILPFLLFRFIHNQIWISLSRHRTAKGNNRIVDRSIEFDQVDRENNWDDQIIFNGLLYYVGYLRMEQVHHLPLWRSGGFIVTALAHIGPVEFIYYWFHRALHHHFLYSRYHSHHHSSIVTQPISAFIHPFAEVASYYAIFAVPVIATELTGTTSIATITLYVIFTDFMNNLGHCNFEVIPKWIFSLFPPLKYLIYTSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="3443" e_stop="2745"/>
            <exon e_start="2671" e_stop="2564"/>
            <exon e_start="2424" e_stop="2221"/>
            <exon e_start="2126" e_stop="2025"/>
            <exon e_start="1938" e_stop="1765"/>
            <exon e_start="1680" e_stop="1345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3443" e_stop="2745" e_length="699"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.939">
            <gDNA_intron_boundary i_start="2744" i_stop="2672" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2671" e_stop="2564" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="2563" i_stop="2425" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2424" e_stop="2221" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="2220" i_stop="2127" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2126" e_stop="2025" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.713" acc_prob="0.998">
            <gDNA_intron_boundary i_start="2024" i_stop="1939" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1938" e_stop="1765" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1764" i_stop="1681" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="1680" e_stop="1345" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3443" stop="2966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3443" stop="2972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3268" stop="2816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3043" stop="2745"/>
              <exon start="2671" stop="2564"/>
              <exon start="2424" stop="2276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2835" stop="2745"/>
              <exon start="2671" stop="2564"/>
              <exon start="2424" stop="2221"/>
              <exon start="2126" stop="2025"/>
              <exon start="1938" stop="1854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2362" stop="2221"/>
              <exon start="2126" stop="2025"/>
              <exon start="1938" stop="1765"/>
              <exon start="1680" stop="1375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2324" stop="2221"/>
              <exon start="2126" stop="2025"/>
              <exon start="1938" stop="1765"/>
              <exon start="1680" stop="1345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2311" stop="2221"/>
              <exon start="2126" stop="2025"/>
              <exon start="1938" stop="1765"/>
              <exon start="1680" stop="1675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1857" stop="1765"/>
              <exon start="1680" stop="1416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206213" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGTATTTTGACAGCATTTATTCATCCGTTTGCTGAGGTCGCATCATATTATGCCATCTTTGCTGTTCCTGTAATCGCAACTGAACTCACTGGGACTACTTCTATAGCTACAATCACTCTTTATGTTATCTTTACTGATTTCATGAACAACTTGGGCCATTGTAACTTTGAGGTGATTCCAAAGTGGATCTTCTCTCTGTTTCCACCTCTCAAGTACTTGATATATACGTCCTCGTGAGTAATCTTCTTACCTCTCCCTACACATATACTCTCTGACGAATTTTTACACTATCACAACCTGTCGATGTCACTGCAGGTACCACTCACTACATCACACGCAATTCAGAACTAATTATTCTCTTTTCATGCCAATATATGACTATATTTTTGGTACAATGGACAAGTCCAGTGACACATTGTATGAAAAGTCACTTGAGAAAAAAGCGGAACTGCCTCATGTGGTTCACCTTACACATCTAACAACCTTACAATCCATCTATCATCTCCGTCTAGGATTTTCATCGTTGGCCTCAAAGCCTCACATGACTAGCTCTAAGTGGTATTTGTGGTTAATGTGGCCTGTCACGCTATGGTCAATACTCATTACTTGGATTTATAGTCACACATTTGTTATCGAGAGGAATTTGTTCAAGGATCTCAAATTACAAACTTGGGCTATTCCAAAGTTTCGCAAACAA : TACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG : GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTAAATTGGTAGATGGAAGTAGCCTAGTTGTTGCTGTGGTTCTCAACTCCATTCCTAAAGGAACTTCCCAAGTGGTATTACAAGCTGGTCGTTTGTCCAAAGTTGCTAATGCTATTGCCCTCGCCTTGTGTCAACGAGGAATTCAG : GTTATCACGTTAGACGAAGAAGAGTACAAGGGACTTAAAGCAAGGTTTACCCCTGAGGCTGCAGCTAATTTGGTCTTGTTGAAAAGTACTTGTGTTTCAAAG : ACGTGGTTAGTAGATGATGGATTGAGTGAAGATGAACAATTGAAAGCACCAAAAGGAACATTGTTTATTCCTTATTCACCATTTCCACCAAAGAAAGTTCGTGAGGATTGCTTCTACTTGAGCACACCAGCCATGATTTGTCCAAAACATGTTCAAAATGTAGACTCTTGTGAG : AACTGGCTGCCAAGAAGAGTGATGAGTGCATCGAGAATAGCTGGAATTTTGCACGCGTTTGAAGGTTGGAACGAGCACGAGTGTGGTGACATGATGTTTGATATTGACAAAGTATGGAAAGCTAGTCTTGATCATGGTTTTTCACCATTAGATGTAGAAATAATGTAGATTATTATTTTGTAAGATCACAGTTATAAGCTTGTAATAATGGTTAATAATTCCTAGCAACTCAATGGCCTGTACTATATGTAATAAATAACTTTTGACAAATTTAAAAGACCATTATTACCTAAACACAAACATATAAGGATCCATTTTTCATTACAAAAATCAACT</gDNA_template>
            <first_frame> D  V  F  *  Q  H  L  F  I  R  L  L  R  S  H  H  I  M  P  S  L  L  F  L  *  S  Q  L  N  S  L  G  L  L  L  *  L  Q  S  L  F  M  L  S  L  L  I  S  *  T  T  W  A  I  V  T  L  R  *  F  Q  S  G  S  S  L  C  F  H  L  S  S  T  *  Y  I  R  P  R  E  *  S  S  Y  L  S  L  H  I  Y  S  L  T  N  F  Y  T  I  T  T  C  R  C  H  C  R  Y  H  S  L  H  H  T  Q  F  R  T  N  Y  S  L  F  M  P  I  Y  D  Y  I  F  G  T  M  D  K  S  S  D  T  L  Y  E  K  S  L  E  K  K  A  E  L  P  H  V  V  H  L  T  H  L  T  T  L  Q  S  I  Y  H  L  R  L  G  F  S  S  L  A  S  K  P  H  M  T  S  S  K  W  Y  L  W  L  M  W  P  V  T  L  W  S  I  L  I  T  W  I  Y  S  H  T  F  V  I  E  R  N  L  F  K  D  L  K  L  Q  T  W  A  I  P  K  F  R  K  Q  :  Y  F  S  Q  W  Q  R  K  S  I  N  N  L  I  K  E  A  I  M  E  A  D  Q  K  G  V  K  V  L  S  L  G  L  L  N  Q  :  D  E  K  L  N  N  N  G  E  I  C  I  R  K  H  P  E  L  K  V  K  L  V  D  G  S  S  L  V  V  A  V  V  L  N  S  I  P  K  G  T  S  Q  V  V  L  Q  A  G  R  L  S  K  V  A  N  A  I  A  L  A  L  C  Q  R  G  I  Q  :  V  I  T  L  D  E  E  E  Y  K  G  L  K  A  R  F  T  P  E  A  A  A  N  L  V  L  L  K  S  T  C  V  S  K  :  T  W  L  V  D  D  G  L  S  E  D  E  Q  L  K  A  P  K  G  T  L  F  I  P  Y  S  P  F  P  P  K  K  V  R  E  D  C  F  Y  L  S  T  P  A  M  I  C  P  K  H  V  Q  N  V  D  S  C  E  :  N  W  L  P  R  R  V  M  S  A  S  R  I  A  G  I  L  H  A  F  E  G  W  N  E  H  E  C  G  D  M  M  F  D  I  D  K  V  W  K  A  S  L  D  H  G  F  S  P  L  D  V  E  I  M  *  I  I  I  L  *  D  H  S  Y  K  L  V  I  M  V  N  N  S  *  Q  L  N  G  L  Y  Y  M  *  *  I  T  F  D  K  F  K  R  P  L  L  P  K  H  K  H  I  R  I  H  F  S  L  Q  K  S  T </first_frame>
            <second_frame>  M  Y  F  D  S  I  Y  S  S  V  C  *  G  R  I  I  L  C  H  L  C  C  S  C  N  R  N  *  T  H  W  D  Y  F  Y  S  Y  N  H  S  L  C  Y  L  Y  *  F  H  E  Q  L  G  P  L  *  L  *  G  D  S  K  V  D  L  L  S  V  S  T  S  Q  V  L  D  I  Y  V  L  V  S  N  L  L  T  S  P  Y  T  Y  T  L  *  R  I  F  T  L  S  Q  P  V  D  V  T  A  G  T  T  H  Y  I  T  R  N  S  E  L  I  I  L  F  S  C  Q  Y  M  T  I  F  L  V  Q  W  T  S  P  V  T  H  C  M  K  S  H  L  R  K  K  R  N  C  L  M  W  F  T  L  H  I  *  Q  P  Y  N  P  S  I  I  S  V  *  D  F  H  R  W  P  Q  S  L  T  *  L  A  L  S  G  I  C  G  *  C  G  L  S  R  Y  G  Q  Y  S  L  L  G  F  I  V  T  H  L  L  S  R  G  I  C  S  R  I  S  N  Y  K  L  G  L  F  Q  S  F  A  N  N :   T  L  V  N  G  K  E  R  V  L  I  I  *  S  R  K  P  S  W  K  Q  I  R  K  A  *  R  F  *  A  S  D  S  *  I  R :   T  R  S  *  I  T  M  V  K  F  A  *  G  S  I  L  S  *  K  L  N  W  *  M  E  V  A  *  L  L  L  W  F  S  T  P  F  L  K  E  L  P  K  W  Y  Y  K  L  V  V  C  P  K  L  L  M  L  L  P  S  P  C  V  N  E  E  F  R :   L  S  R  *  T  K  K  S  T  R  D  L  K  Q  G  L  P  L  R  L  Q  L  I  W  S  C  *  K  V  L  V  F  Q  R :   R  G  *  *  M  M  D  *  V  K  M  N  N  *  K  H  Q  K  E  H  C  L  F  L  I  H  H  F  H  Q  R  K  F  V  R  I  A  S  T  *  A  H  Q  P  *  F  V  Q  N  M  F  K  M  *  T  L  V  R :   T  G  C  Q  E  E  *  *  V  H  R  E  *  L  E  F  C  T  R  L  K  V  G  T  S  T  S  V  V  T  *  C  L  I  L  T  K  Y  G  K  L  V  L  I  M  V  F  H  H  *  M  *  K  *  C  R  L  L  F  C  K  I  T  V  I  S  L  *  *  W  L  I  I  P  S  N  S  M  A  C  T  I  C  N  K  *  L  L  T  N  L  K  D  H  Y  Y  L  N  T  N  I  *  G  S  I  F  H  Y  K  N  Q   </second_frame>
            <third_frame>   C  I  L  T  A  F  I  H  P  F  A  E  V  A  S  Y  Y  A  I  F  A  V  P  V  I  A  T  E  L  T  G  T  T  S  I  A  T  I  T  L  Y  V  I  F  T  D  F  M  N  N  L  G  H  C  N  F  E  V  I  P  K  W  I  F  S  L  F  P  P  L  K  Y  L  I  Y  T  S  S  *  V  I  F  L  P  L  P  T  H  I  L  S  D  E  F  L  H  Y  H  N  L  S  M  S  L  Q  V  P  L  T  T  S  H  A  I  Q  N  *  L  F  S  F  H  A  N  I  *  L  Y  F  W  Y  N  G  Q  V  Q  *  H  I  V  *  K  V  T  *  E  K  S  G  T  A  S  C  G  S  P  Y  T  S  N  N  L  T  I  H  L  S  S  P  S  R  I  F  I  V  G  L  K  A  S  H  D  *  L  *  V  V  F  V  V  N  V  A  C  H  A  M  V  N  T  H  Y  L  D  L  *  S  H  I  C  Y  R  E  E  F  V  Q  G  S  Q  I  T  N  L  G  Y  S  K  V  S  Q  T   : I  L  *  S  M  A  K  K  E  Y  *  *  F  D  Q  G  S  H  H  G  S  R  S  E  R  R  K  G  F  E  P  R  T  L  K  S   : G  R  E  V  E  *  Q  W  *  N  L  H  K  E  A  S  *  A  E  S  *  I  G  R  W  K  *  P  S  C  C  C  G  S  Q  L  H  S  *  R  N  F  P  S  G  I  T  S  W  S  F  V  Q  S  C  *  C  Y  C  P  R  L  V  S  T  R  N  S   : G  Y  H  V  R  R  R  R  V  Q  G  T  *  S  K  V  Y  P  *  G  C  S  *  F  G  L  V  E  K  Y  L  C  F  K   : D  V  V  S  R  *  W  I  E  *  R  *  T  I  E  S  T  K  R  N  I  V  Y  S  L  F  T  I  S  T  K  E  S  S  *  G  L  L  L  L  E  H  T  S  H  D  L  S  K  T  C  S  K  C  R  L  L  *   : E  L  A  A  K  K  S  D  E  C  I  E  N  S  W  N  F  A  R  V  *  R  L  E  R  A  R  V  W  *  H  D  V  *  Y  *  Q  S  M  E  S  *  S  *  S  W  F  F  T  I  R  C  R  N  N  V  D  Y  Y  F  V  R  S  Q  L  *  A  C  N  N  G  *  *  F  L  A  T  Q  W  P  V  L  Y  V  I  N  N  F  *  Q  I  *  K  T  I  I  T  *  T  Q  T  Y  K  D  P  F  F  I  T  K  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3200" stop="2745"/>
                    <exon start="2671" stop="2564"/>
                    <exon start="2424" stop="2221"/>
                    <exon start="2126" stop="2025"/>
                    <exon start="1938" stop="1765"/>
                    <exon start="1680" stop="1513"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1209</number_coding_nucleotides>
                  <number_encoded_amino_acids>403</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSYLSLHIYSLTNFYTITTCRCHCRYHSLHHTQFRTNYSLFMPIYDYIFGTMDKSSDTLYEKSLEKKAELPHVVHLTHLTTLQSIYHLRLGFSSLASKPHMTSSKWYLWLMWPVTLWSILITWIYSHTFVIERNLFKDLKLQTWAIPKFRKQYFSQWQRKSINNLIKEAIMEADQKGVKVLSLGLLNQDEKLNNNGEICIRKHPELKVKLVDGSSLVVAVVLNSIPKGTSQVVLQAGRLSKVANAIALALCQRGIQVITLDEEEYKGLKARFTPEAAANLVLLKSTCVSKTWLVDDGLSEDEQLKAPKGTLFIPYSPFPPKKVREDCFYLSTPAMICPKHVQNVDSCENWLPRRVMSASRIAGILHAFEGWNEHECGDMMFDIDKVWKASLDHGFSPLDVEIM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3441" stop="3205"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CILTAFIHPFAEVASYYAIFAVPVIATELTGTTSIATITLYVIFTDFMNNLGHCNFEVIPKWIFSLFPPLKYLIYTSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="2695" e_stop="2564"/>
            <exon e_start="2424" e_stop="2364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="0.939"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="2695" e_stop="2564" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="2563" i_stop="2425" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="2424" e_stop="2364" e_length="61"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2695" stop="2564"/>
              <exon start="2424" stop="2364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204135" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATGATTATTTTTTTTTTAACAGTACTTTAGTCAATGGCAAAGAAAGAGTATTAATAATTTGATCAAGGAAGCCATCATGGAAGCAGATCAGAAAGGCGTAAAGGTTTTGAGCCTCGGACTCTTAAATCAG : GACGAGAAGTTGAATAACAATGGTGAAATTTGCATAAGGAAGCATCCTGAGCTGAAAGTTA</gDNA_template>
            <first_frame> S  *  L  F  F  F  *  Q  Y  F  S  Q  W  Q  R  K  S  I  N  N  L  I  K  E  A  I  M  E  A  D  Q  K  G  V  K  V  L  S  L  G  L  L  N  Q  :  D  E  K  L  N  N  N  G  E  I  C  I  R  K  H  P  E  L  K  V  </first_frame>
            <second_frame>  H  D  Y  F  F  F  N  S  T  L  V  N  G  K  E  R  V  L  I  I  *  S  R  K  P  S  W  K  Q  I  R  K  A  *  R  F  *  A  S  D  S  *  I  R :   T  R  S  *  I  T  M  V  K  F  A  *  G  S  I  L  S  *  K  L </second_frame>
            <third_frame>   M  I  I  F  F  L  T  V  L  *  S  M  A  K  K  E  Y  *  *  F  D  Q  G  S  H  H  G  S  R  S  E  R  R  K  G  F  E  P  R  T  L  K  S   : G  R  E  V  E  *  Q  W  *  N  L  H  K  E  A  S  *  A  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0004A15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9545" PGL_stop="7956"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9545" e_stop="7956"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9545" e_stop="7956" e_length="1590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9545" stop="9129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9489" stop="8712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9254" stop="8393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9254" stop="8399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9254" stop="8715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9254" stop="8778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9254" stop="8916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9132" stop="8658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9132" stop="8700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9017" stop="8409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8957" stop="8476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8721" stop="7956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAGGCATCTCATCTCTTTTTCTTAAACAAAATTAAAGAGTAAGGCTAAAAGAATTGTCTCTTTTGATGTTGGCATTAATTTAGATTAGGCGCTTATCGATCATCCTATCAAAAACTATATATGAATCTTTTAACACTTTCTTATCCTAATAATGAAAATTTTATTTATGTTTGATTTGCCATGCATGGTTGAATTGTATTCTAACTTCTGTTTAATAATATTAATTTCATATTACTTTTTATATTATAACTATCATAGTAAACCAAAATCCAAACTTAATTGGTGCAGATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGGATCGCGCAAGGTTGTGTTTCCACTGGGATATGGGTCATTGGACACGAATGTGGTCATCATGGCTTCAGTGATTACCAATGGGTAGATGACACTGTTGGTCTCATCCTACATTCTGCACTTTTAACACCATACTTTGCATGGAAGCATAGTCATCGGCGTCATCATGCCAACACTGGCTCCCTTGAGAATGATGAAGTGTACATACCTAGGTTTAAATCCAAACTGAGATGGTACTACAAATACTTGAACAATCCATTAGGACGAGTATTCGTACTTGCCTTCACCCTCACCTTTGCCTGGCCTTTATACTTGATGTTCAATATCTCAGGCAAAAAATATGAACGTTTTGCATGTCACTATGATCCAAATAGCCCAATCTATTCTAACCGCGAGAGAATGCAAATCTACATTTCAGATGCAGGTGTGATTGCAGCTACTTATGTATTATACCGCCTTGCTATGACACAAGGGCTAACTTGGGTTCTGTGTATGTACGGAGTGCCTCTCCTTATCGTGAATGGATTTATAGTGTTGATCACTCTTATGCACCACACTCATGCTTCATTGCCACATTATGATTCATCGGAGTGGGATTATCTAAGAGGAGCTTTAGCTACCGTAGATAGAGACTATGGTATACTAAACAAGGTGTTCCATAATGTTACTGATACTCATGTCTTGCATCATATATTCTCATACATATCACATTACCATGCAATGGAGGCGACCAACGCGATTAAGCCATTGCTAGGAGATTATTACCAAGTTGATGATACCCCAATTTTAAAGGCAATGTGGAGGGATACAAAGGAGTGCATCTATGTAGAGAAGGACGAAGGATCTCAAGGAAGAGGTGTTTATTGGTATAAAAACAAGCTTTGAAAGTAGAATACCAAGTAATTGGTTAAATCTTTTAACCTAATAAGAAGATGCAAGTATTTTGAATAATTATGTGTGTTTTTGTTGTATTTTATTGTTAAATGTTGGTTTTAGTTGTTACTATTGTATTGTTAA</gDNA_template>
            <first_frame> *  K  A  S  H  L  F  F  L  N  K  I  K  E  *  G  *  K  N  C  L  F  *  C  W  H  *  F  R  L  G  A  Y  R  S  S  Y  Q  K  L  Y  M  N  L  L  T  L  S  Y  P  N  N  E  N  F  I  Y  V  *  F  A  M  H  G  *  I  V  F  *  L  L  F  N  N  I  N  F  I  L  L  F  I  L  *  L  S  *  *  T  K  I  Q  T  *  L  V  Q  I  Y  F  R  I  D  Q  E  T  M  G  A  G  G  N  M  S  T  P  T  T  K  K  S  H  L  Q  R  V  P  S  S  K  P  P  F  T  L  G  D  V  K  K  A  I  P  P  H  C  F  Q  R  S  L  I  R  S  F  S  Y  L  I  Q  D  L  I  L  V  S  V  F  Y  Y  I  A  N  T  Y  F  H  L  L  P  S  P  L  T  Y  L  A  W  P  A  Y  W  I  A  Q  G  C  V  S  T  G  I  W  V  I  G  H  E  C  G  H  H  G  F  S  D  Y  Q  W  V  D  D  T  V  G  L  I  L  H  S  A  L  L  T  P  Y  F  A  W  K  H  S  H  R  R  H  H  A  N  T  G  S  L  E  N  D  E  V  Y  I  P  R  F  K  S  K  L  R  W  Y  Y  K  Y  L  N  N  P  L  G  R  V  F  V  L  A  F  T  L  T  F  A  W  P  L  Y  L  M  F  N  I  S  G  K  K  Y  E  R  F  A  C  H  Y  D  P  N  S  P  I  Y  S  N  R  E  R  M  Q  I  Y  I  S  D  A  G  V  I  A  A  T  Y  V  L  Y  R  L  A  M  T  Q  G  L  T  W  V  L  C  M  Y  G  V  P  L  L  I  V  N  G  F  I  V  L  I  T  L  M  H  H  T  H  A  S  L  P  H  Y  D  S  S  E  W  D  Y  L  R  G  A  L  A  T  V  D  R  D  Y  G  I  L  N  K  V  F  H  N  V  T  D  T  H  V  L  H  H  I  F  S  Y  I  S  H  Y  H  A  M  E  A  T  N  A  I  K  P  L  L  G  D  Y  Y  Q  V  D  D  T  P  I  L  K  A  M  W  R  D  T  K  E  C  I  Y  V  E  K  D  E  G  S  Q  G  R  G  V  Y  W  Y  K  N  K  L  *  K  *  N  T  K  *  L  V  K  S  F  N  L  I  R  R  C  K  Y  F  E  *  L  C  V  F  L  L  Y  F  I  V  K  C  W  F  *  L  L  L  L  Y  C  * </first_frame>
            <second_frame>  K  R  H  L  I  S  F  S  *  T  K  L  K  S  K  A  K  R  I  V  S  F  D  V  G  I  N  L  D  *  A  L  I  D  H  P  I  K  N  Y  I  *  I  F  *  H  F  L  I  L  I  M  K  I  L  F  M  F  D  L  P  C  M  V  E  L  Y  S  N  F  C  L  I  I  L  I  S  Y  Y  F  L  Y  Y  N  Y  H  S  K  P  K  S  K  L  N  W  C  R  S  I  L  G  L  I  K  R  P  W  E  L  V  E  I  C  L  L  Q  Q  L  K  K  V  I  S  K  E  F  H  L  R  S  P  L  L  H  L  A  M  *  R  R  P  F  L  L  T  A  S  N  V  L  L  F  D  P  S  L  I  L  F  K  I  S  Y  L  S  P  S  S  I  I  L  P  T  L  T  S  I  S  F  H  L  H  *  L  T  L  P  G  P  L  I  G  S  R  K  V  V  F  P  L  G  Y  G  S  L  D  T  N  V  V  I  M  A  S  V  I  T  N  G  *  M  T  L  L  V  S  S  Y  I  L  H  F  *  H  H  T  L  H  G  S  I  V  I  G  V  I  M  P  T  L  A  P  L  R  M  M  K  C  T  Y  L  G  L  N  P  N  *  D  G  T  T  N  T  *  T  I  H  *  D  E  Y  S  Y  L  P  S  P  S  P  L  P  G  L  Y  T  *  C  S  I  S  Q  A  K  N  M  N  V  L  H  V  T  M  I  Q  I  A  Q  S  I  L  T  A  R  E  C  K  S  T  F  Q  M  Q  V  *  L  Q  L  L  M  Y  Y  T  A  L  L  *  H  K  G  *  L  G  F  C  V  C  T  E  C  L  S  L  S  *  M  D  L  *  C  *  S  L  L  C  T  T  L  M  L  H  C  H  I  M  I  H  R  S  G  I  I  *  E  E  L  *  L  P  *  I  E  T  M  V  Y  *  T  R  C  S  I  M  L  L  I  L  M  S  C  I  I  Y  S  H  T  Y  H  I  T  M  Q  W  R  R  P  T  R  L  S  H  C  *  E  I  I  T  K  L  M  I  P  Q  F  *  R  Q  C  G  G  I  Q  R  S  A  S  M  *  R  R  T  K  D  L  K  E  E  V  F  I  G  I  K  T  S  F  E  S  R  I  P  S  N  W  L  N  L  L  T  *  *  E  D  A  S  I  L  N  N  Y  V  C  F  C  C  I  L  L  L  N  V  G  F  S  C  Y  Y  C  I  V   </second_frame>
            <third_frame>   K  G  I  S  S  L  F  L  K  Q  N  *  R  V  R  L  K  E  L  S  L  L  M  L  A  L  I  *  I  R  R  L  S  I  I  L  S  K  T  I  Y  E  S  F  N  T  F  L  S  *  *  *  K  F  Y  L  C  L  I  C  H  A  W  L  N  C  I  L  T  S  V  *  *  Y  *  F  H  I  T  F  Y  I  I  T  I  I  V  N  Q  N  P  N  L  I  G  A  D  L  F  *  D  *  S  R  D  H  G  S  W  W  K  Y  V  Y  S  N  N  *  K  K  S  S  P  K  S  S  I  F  E  A  P  F  Y  T  W  R  C  E  E  G  H  S  S  S  L  L  P  T  F  S  Y  S  I  L  L  L  S  Y  S  R  S  H  T  C  L  R  L  L  L  Y  C  Q  H  L  L  P  S  P  S  I  S  I  N  L  P  C  L  A  R  L  L  D  R  A  R  L  C  F  H  W  D  M  G  H  W  T  R  M  W  S  S  W  L  Q  *  L  P  M  G  R  *  H  C  W  S  H  P  T  F  C  T  F  N  T  I  L  C  M  E  A  *  S  S  A  S  S  C  Q  H  W  L  P  *  E  *  *  S  V  H  T  *  V  *  I  Q  T  E  M  V  L  Q  I  L  E  Q  S  I  R  T  S  I  R  T  C  L  H  P  H  L  C  L  A  F  I  L  D  V  Q  Y  L  R  Q  K  I  *  T  F  C  M  S  L  *  S  K  *  P  N  L  F  *  P  R  E  N  A  N  L  H  F  R  C  R  C  D  C  S  Y  L  C  I  I  P  P  C  Y  D  T  R  A  N  L  G  S  V  Y  V  R  S  A  S  P  Y  R  E  W  I  Y  S  V  D  H  S  Y  A  P  H  S  C  F  I  A  T  L  *  F  I  G  V  G  L  S  K  R  S  F  S  Y  R  R  *  R  L  W  Y  T  K  Q  G  V  P  *  C  Y  *  Y  S  C  L  A  S  Y  I  L  I  H  I  T  L  P  C  N  G  G  D  Q  R  D  *  A  I  A  R  R  L  L  P  S  *  *  Y  P  N  F  K  G  N  V  E  G  Y  K  G  V  H  L  C  R  E  G  R  R  I  S  R  K  R  C  L  L  V  *  K  Q  A  L  K  V  E  Y  Q  V  I  G  *  I  F  *  P  N  K  K  M  Q  V  F  *  I  I  M  C  V  F  V  V  F  Y  C  *  M  L  V  L  V  V  T  I  V  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9263" stop="8088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVQIYFRIDQETMGAGGNMSTPTTKKSHLQRVPSSKPPFTLGDVKKAIPPHCFQRSLIRSFSYLIQDLILVSVFYYIANTYFHLLPSPLTYLAWPAYWIAQGCVSTGIWVIGHECGHHGFSDYQWVDDTVGLILHSALLTPYFAWKHSHRRHHANTGSLENDEVYIPRFKSKLRWYYKYLNNPLGRVFVLAFTLTFAWPLYLMFNISGKKYERFACHYDPNSPIYSNRERMQIYISDAGVIAATYVLYRLAMTQGLTWVLCMYGVPLLIVNGFIVLITLMHHTHASLPHYDSSEWDYLRGALATVDRDYGILNKVFHNVTDTHVLHHIFSYISHYHAMEATNAIKPLLGDYYQVDDTPILKAMWRDTKECIYVEKDEGSQGRGVYWYKNKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="33418" PGL_stop="25349"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33418" e_stop="33348"/>
            <exon e_start="32996" e_stop="32941"/>
            <exon e_start="31284" e_stop="31155"/>
            <exon e_start="30895" e_stop="30784"/>
            <exon e_start="28519" e_stop="28420"/>
            <exon e_start="26121" e_stop="26043"/>
            <exon e_start="25946" e_stop="25775"/>
            <exon e_start="25666" e_stop="25586"/>
            <exon e_start="25456" e_stop="25349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.864" acc_prob="0.921" e_score="0.986"/>
          <exon-intron don_prob="0.993" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.468" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.305" e_score="1.000"/>
          <exon-only e_score="0.852"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="33418" e_stop="33348" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.864" acc_prob="0.921">
            <gDNA_intron_boundary i_start="33347" i_stop="32997" i_length="351"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32996" e_stop="32941" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.977">
            <gDNA_intron_boundary i_start="32940" i_stop="31285" i_length="1656"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31284" e_stop="31155" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.960">
            <gDNA_intron_boundary i_start="31154" i_stop="30896" i_length="259"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30895" e_stop="30784" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="30783" i_stop="28520" i_length="2264"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28519" e_stop="28420" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28419" i_stop="26122" i_length="2298"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26121" e_stop="26043" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.468">
            <gDNA_intron_boundary i_start="26042" i_stop="25947" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25946" e_stop="25775" e_length="172"/>
          </exon>
          <intron i_serial="7" don_prob="0.882" acc_prob="0.988">
            <gDNA_intron_boundary i_start="25774" i_stop="25667" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="25666" e_stop="25586" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.305">
            <gDNA_intron_boundary i_start="25585" i_stop="25457" i_length="129"/>
          </intron>
          <exon e_serial="9" e_score="0.852">
            <gDNA_exon_boundary e_start="25456" e_stop="25349" e_length="108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33418" stop="33348"/>
              <exon start="32996" stop="32941"/>
              <exon start="31284" stop="31155"/>
              <exon start="30895" stop="30784"/>
              <exon start="28519" stop="28420"/>
              <exon start="26121" stop="26077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30881" stop="30784"/>
              <exon start="28519" stop="28420"/>
              <exon start="26121" stop="26043"/>
              <exon start="25946" stop="25775"/>
              <exon start="25666" stop="25589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28474" stop="28420"/>
              <exon start="26121" stop="26043"/>
              <exon start="25946" stop="25775"/>
              <exon start="25666" stop="25586"/>
              <exon start="25456" stop="25349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAAGGTTGAAATTTAACTGGGATGAGCAATAACAGGCTAAATGGTCATTAGCTCAGATCAGCTTTTCAG : GTTATAGTCAATCAGTGTTATATCCAGTGCCAGTCAAGGTGATGCCTGCTATGAAG : ACTGCTATTCATGGTGGGATTGGGCACGTATTCAGCAAACTAATAAAGGAGATTGGTGATCCTGTTGACTTTGAACTTCCAGATTGGTTAAATAAATGGCAGTCAATGCCCTATACCTTTATTAAGCGCA : ATATATACCTCACTAAGAAGGTAAAGCGACGTCTGGAAGATGATGGTATATTTTGTTCCTGCAGCTCAACGGCAGAAACTTCTGTTGTGTGTGGCAAGGATTGTCTCTGTGG : CATAATGTTGTCTAGCTGCTCCTCGGGTTGTAAATGTGGGAGTTCTTGTCTGAATAAGCCATTCCATCAACGTCCTGTGAAGAAGATGAAATTAGTGAAG : ACTGAAAAATGTGGCTCTGGAATTGTGGCAGATGAAGATATCAAACGAGGAGACTTTGTTATAGAGTATGTTGGAGAAG : TTATTGATGACAAAACATGTGAAGAGAGGCTTTGGAAAATGAAGCATAGTGGAGAAACAAACTTCTACTTGTGTGAAATCAATCGGGATATGGTGATTGATGCCACTTACAAGGGCAACAAATCCCGATACATTAATCATAGTTGTTGTCCAAATACTGAGATGCAGAAATG : GATGATTGATGGTGAAACAAGAATTGGCATATTTGCAACACGAGACATTAAAAGGGGCGAGCATCTGACCTATGATTACCA : GTTTGTTCAGTTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGTAAGATGTAGGCGAAAGCTGGGCGTTAAACCTAACAAACCAAAACTCCCTGCTTCAGATACCGC</gDNA_template>
            <first_frame> V  K  V  E  I  *  L  G  *  A  I  T  G  *  M  V  I  S  S  D  Q  L  F  R :   L  *  S  I  S  V  I  S  S  A  S  Q  G  D  A  C  Y  E   : D  C  Y  S  W  W  D  W  A  R  I  Q  Q  T  N  K  G  D  W  *  S  C  *  L  *  T  S  R  L  V  K  *  M  A  V  N  A  L  Y  L  Y  *  A  Q :   Y  I  P  H  *  E  G  K  A  T  S  G  R  *  W  Y  I  L  F  L  Q  L  N  G  R  N  F  C  C  V  W  Q  G  L  S  L  W  :  H  N  V  V  *  L  L  L  G  L  *  M  W  E  F  L  S  E  *  A  I  P  S  T  S  C  E  E  D  E  I  S  E   : D  *  K  M  W  L  W  N  C  G  R  *  R  Y  Q  T  R  R  L  C  Y  R  V  C  W  R  S :   Y  *  *  Q  N  M  *  R  E  A  L  E  N  E  A  *  W  R  N  K  L  L  L  V  *  N  Q  S  G  Y  G  D  *  C  H  L  Q  G  Q  Q  I  P  I  H  *  S  *  L  L  S  K  Y  *  D  A  E  M  :  D  D  *  W  *  N  K  N  W  H  I  C  N  T  R  H  *  K  G  R  A  S  D  L  *  L  P  :  V  C  S  V  W  C  R  S  R  L  P  L  W  C  C  K  M  *  A  K  A  G  R  *  T  *  Q  T  K  T  P  C  F  R  Y  R </first_frame>
            <second_frame>  S  R  L  K  F  N  W  D  E  Q  *  Q  A  K  W  S  L  A  Q  I  S  F  S   : G  Y  S  Q  S  V  L  Y  P  V  P  V  K  V  M  P  A  M  K  :  T  A  I  H  G  G  I  G  H  V  F  S  K  L  I  K  E  I  G  D  P  V  D  F  E  L  P  D  W  L  N  K  W  Q  S  M  P  Y  T  F  I  K  R   : N  I  Y  L  T  K  K  V  K  R  R  L  E  D  D  G  I  F  C  S  C  S  S  T  A  E  T  S  V  V  C  G  K  D  C  L  C  G :   I  M  L  S  S  C  S  S  G  C  K  C  G  S  S  C  L  N  K  P  F  H  Q  R  P  V  K  K  M  K  L  V  K  :  T  E  K  C  G  S  G  I  V  A  D  E  D  I  K  R  G  D  F  V  I  E  Y  V  G  E   : V  I  D  D  K  T  C  E  E  R  L  W  K  M  K  H  S  G  E  T  N  F  Y  L  C  E  I  N  R  D  M  V  I  D  A  T  Y  K  G  N  K  S  R  Y  I  N  H  S  C  C  P  N  T  E  M  Q  K  W :   M  I  D  G  E  T  R  I  G  I  F  A  T  R  D  I  K  R  G  E  H  L  T  Y  D  Y  Q :   F  V  Q  F  G  A  D  Q  D  C  H  C  G  A  V  R  C  R  R  K  L  G  V  K  P  N  K  P  K  L  P  A  S  D  T   </second_frame>
            <third_frame>   Q  G  *  N  L  T  G  M  S  N  N  R  L  N  G  H  *  L  R  S  A  F  Q  :  V  I  V  N  Q  C  Y  I  Q  C  Q  S  R  *  C  L  L  *  R :   L  L  F  M  V  G  L  G  T  Y  S  A  N  *  *  R  R  L  V  I  L  L  T  L  N  F  Q  I  G  *  I  N  G  S  Q  C  P  I  P  L  L  S  A  :  I  Y  T  S  L  R  R  *  S  D  V  W  K  M  M  V  Y  F  V  P  A  A  Q  R  Q  K  L  L  L  C  V  A  R  I  V  S  V   : A  *  C  C  L  A  A  P  R  V  V  N  V  G  V  L  V  *  I  S  H  S  I  N  V  L  *  R  R  *  N  *  *  R :   L  K  N  V  A  L  E  L  W  Q  M  K  I  S  N  E  E  T  L  L  *  S  M  L  E  K  :  L  L  M  T  K  H  V  K  R  G  F  G  K  *  S  I  V  E  K  Q  T  S  T  C  V  K  S  I  G  I  W  *  L  M  P  L  T  R  A  T  N  P  D  T  L  I  I  V  V  V  Q  I  L  R  C  R  N   : G  *  L  M  V  K  Q  E  L  A  Y  L  Q  H  E  T  L  K  G  A  S  I  *  P  M  I  T   : S  L  F  S  L  V  Q  I  K  I  A  T  V  V  L  *  D  V  G  E  S  W  A  L  N  L  T  N  Q  N  S  L  L  Q  I  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33384" stop="33348"/>
                    <exon start="32996" stop="32941"/>
                    <exon start="31284" stop="31155"/>
                    <exon start="30895" stop="30784"/>
                    <exon start="28519" stop="28420"/>
                    <exon start="26121" stop="26043"/>
                    <exon start="25946" stop="25775"/>
                    <exon start="25666" stop="25586"/>
                    <exon start="25456" stop="25351"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAKWSLAQISFSGYSQSVLYPVPVKVMPAMKTAIHGGIGHVFSKLIKEIGDPVDFELPDWLNKWQSMPYTFIKRNIYLTKKVKRRLEDDGIFCSCSSTAETSVVCGKDCLCGIMLSSCSSGCKCGSSCLNKPFHQRPVKKMKLVKTEKCGSGIVADEDIKRGDFVIEYVGEVIDDKTCEERLWKMKHSGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWMIDGETRIGIFATRDIKRGEHLTYDYQFVQFGADQDCHCGAVRCRRKLGVKPNKPKLPASDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="35012" PGL_stop="38061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36950" e_stop="38061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="36950" e_stop="38061" e_length="1112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36950" stop="37666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36950" stop="37596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36950" stop="37565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36950" stop="37259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37570" stop="38012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37589" stop="38061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278208" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37591" stop="38012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37708" stop="38012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37745" stop="38012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGAAGTGTCCCTTGTTTTTATCCACTTATAGTTTATTGTTTTGCCCTTACTTTAAATGGTCAAACTAGCCGTTAACTAGTCGTTGTAGAGTTTTAGGAGCTTTAATAAAGAACTAGTTTAGGTATAATAACCATAAATCATAAGGTTTTTGATGCTAGTTTATACTAGATGAGCTTGTTGAATCCTAGGAGATACGTTTATATGATTGAATATCCTTACAGAAAGTGTCATACACACGCCTTAAGCTAGAAGAATATCCATGATTTCAACAATTAGACGTGATTTTCAACTTGGAATTTTCATTTACACGACTCTCGTCTCTGATGATGATGATCATCAGTTTCACAGAATTTTGTGATAAAGGTATGATTCTGCACCCCAAATGATTTCCTCTCAACTTCAAAAGCCATAATATGTGTCTTACACCAACTCTATCAAACATTCTGCCAATACCTACGGACTGTATATAAAATTTTTCATAATCTTATCACTGTTGTTATGTTGGTCAATTCTAGTGACAATGTATAGATGCACATATTTTGAGTGTTTACTCTGAAGATGTTCTTTTTCTTCATCAAACTCGGCAGGACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATTGTATGTAATCTGGTTTCCCTTACATTTCTTTTAAAGCTGTTCTGAAAAA</gDNA_template>
            <first_frame> K  E  V  S  L  V  F  I  H  L  *  F  I  V  L  P  L  L  *  M  V  K  L  A  V  N  *  S  L  *  S  F  R  S  F  N  K  E  L  V  *  V  *  *  P  *  I  I  R  F  L  M  L  V  Y  T  R  *  A  C  *  I  L  G  D  T  F  I  *  L  N  I  L  T  E  S  V  I  H  T  P  *  A  R  R  I  S  M  I  S  T  I  R  R  D  F  Q  L  G  I  F  I  Y  T  T  L  V  S  D  D  D  D  H  Q  F  H  R  I  L  *  *  R  Y  D  S  A  P  Q  M  I  S  S  Q  L  Q  K  P  *  Y  V  S  Y  T  N  S  I  K  H  S  A  N  T  Y  G  L  Y  I  K  F  F  I  I  L  S  L  L  L  C  W  S  I  L  V  T  M  Y  R  C  T  Y  F  E  C  L  L  *  R  C  S  F  S  S  S  N  S  A  G  L  *  L  I  T  W  *  S  A  F  P  K  D  S  R  R  N  F  N  W  *  G  L  D  I  V  Q  P  S  K  G  K  T  *  F  S  I  S  D  F  L  I  P  L  G  W  K  F  L  L  D  C  K  L  R  L  K  K  T  P  E  S  L  *  V  V  T  I  S  Q  R  S  V  N  L  Q  L  Q  L  E  N  G  D  L  Q  S  H  T  K  V  K  E  *  N  M  L  M  K  *  L  E  G  K  K  V  K  Q  A  R  R  S  K  S  W  Y  I  L  S  L  F  Y  C  I  F  L  R  A  I  L  K  L  G  S  F  C  K  *  L  D  K  F  F  I  L  W  I  P  L  N  I  R  V  T  Q  F  E  Y  C  M  *  S  G  F  P  Y  I  S  F  K  A  V  L  K   </first_frame>
            <second_frame>  R  K  C  P  L  F  L  S  T  Y  S  L  L  F  C  P  Y  F  K  W  S  N  *  P  L  T  S  R  C  R  V  L  G  A  L  I  K  N  *  F  R  Y  N  N  H  K  S  *  G  F  *  C  *  F  I  L  D  E  L  V  E  S  *  E  I  R  L  Y  D  *  I  S  L  Q  K  V  S  Y  T  R  L  K  L  E  E  Y  P  *  F  Q  Q  L  D  V  I  F  N  L  E  F  S  F  T  R  L  S  S  L  M  M  M  I  I  S  F  T  E  F  C  D  K  G  M  I  L  H  P  K  *  F  P  L  N  F  K  S  H  N  M  C  L  T  P  T  L  S  N  I  L  P  I  P  T  D  C  I  *  N  F  S  *  S  Y  H  C  C  Y  V  G  Q  F  *  *  Q  C  I  D  A  H  I  L  S  V  Y  S  E  D  V  L  F  L  H  Q  T  R  Q  D  S  N  *  *  H  G  S  R  R  F  Q  R  I  R  E  E  T  S  I  G  R  G  W  I  S  C  N  H  R  R  E  R  H  S  S  Q  S  R  I  F  S  S  R  *  D  G  S  S  C  W  T  A  S  *  G  *  R  K  H  Q  N  H  C  K  W  L  R  *  V  R  D  R  S  I  C  S  F  N  *  K  M  E  T  S  R  A  I  Q  R  *  R  S  E  I  C  *  *  N  S  *  K  E  R  R  *  S  R  Q  E  E  V  N  H  G  T  F  C  H  C  F  I  V  F  F  L  E  L  F  *  S  *  V  H  F  A  S  D  L  T  N  F  L  S  C  G  S  L  *  I  *  E  S  H  N  L  N  I  V  C  N  L  V  S  L  T  F  L  L  K  L  F  *  K  </second_frame>
            <third_frame>   G  S  V  P  C  F  Y  P  L  I  V  Y  C  F  A  L  T  L  N  G  Q  T  S  R  *  L  V  V  V  E  F  *  E  L  *  *  R  T  S  L  G  I  I  T  I  N  H  K  V  F  D  A  S  L  Y  *  M  S  L  L  N  P  R  R  Y  V  Y  M  I  E  Y  P  Y  R  K  C  H  T  H  A  L  S  *  K  N  I  H  D  F  N  N  *  T  *  F  S  T  W  N  F  H  L  H  D  S  R  L  *  *  *  *  S  S  V  S  Q  N  F  V  I  K  V  *  F  C  T  P  N  D  F  L  S  T  S  K  A  I  I  C  V  L  H  Q  L  Y  Q  T  F  C  Q  Y  L  R  T  V  Y  K  I  F  H  N  L  I  T  V  V  M  L  V  N  S  S  D  N  V  *  M  H  I  F  *  V  F  T  L  K  M  F  F  F  F  I  K  L  G  R  T  L  T  D  N  M  V  V  G  V  S  K  G  F  E  K  K  L  Q  L  V  G  V  G  Y  R  A  T  I  E  G  K  D  I  V  L  N  L  G  F  S  H  P  V  R  M  E  V  P  A  G  L  Q  V  K  V  E  E  N  T  R  I  T  V  S  G  Y  D  K  S  E  I  G  Q  F  A  A  S  I  R  K  W  R  P  P  E  P  Y  K  G  K  G  V  K  Y  A  D  E  I  V  R  R  K  E  G  K  A  G  K  K  K  *  I  M  V  H  F  V  I  V  L  L  Y  F  S  *  S  Y  F  E  V  R  F  I  L  Q  V  T  *  Q  I  F  Y  L  V  D  P  F  K  Y  K  S  H  T  I  *  I  L  Y  V  I  W  F  P  L  H  F  F  *  S  C  S  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37495" stop="37875"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFTLKMFFFFIKLGRTLTDNMVVGVSKGFEKKLQLVGVGYRATIEGKDIVLNLGFSHPVRMEVPAGLQVKVEENTRITVSGYDKSEIGQFAASIRKWRPPEPYKGKGVKYADEIVRRKEGKAGKKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35012" e_stop="35148"/>
            <exon e_start="37539" e_stop="38061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35012" e_stop="35148" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.978">
            <gDNA_intron_boundary i_start="35149" i_stop="37538" i_length="2390"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="37539" e_stop="38061" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35012" stop="35148"/>
              <exon start="37539" stop="37980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35012" stop="35148"/>
              <exon start="37539" stop="37956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35012" stop="35148"/>
              <exon start="37539" stop="37927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35012" stop="35148"/>
              <exon start="37539" stop="37719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37570" stop="38012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37589" stop="38061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278208" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37591" stop="38012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37708" stop="38012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37745" stop="38012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTTGAGAAGGAAGATGGAGGTATTCTAAGGGTCAGAAAAGCCATGGAGACAAGACGCGCTAATCAGATGCATGGTTTATTCAG : GACTCTAACTGATAACATGGTAGTCGGCGTTTCCAAAGGATTCGAGAAGAAACTTCAATTGGTAGGGGTTGGATATCGTGCAACCATCGAAGGGAAAGACATAGTTCTCAATCTCGGATTTTCTCATCCCGTTAGGATGGAAGTTCCTGCTGGACTGCAAGTTAAGGTTGAAGAAAACACCAGAATCACTGTAAGTGGTTACGATAAGTCAGAGATCGGTCAATTTGCAGCTTCAATTAGAAAATGGAGACCTCCAGAGCCATACAAAGGTAAAGGAGTGAAATATGCTGATGAAATAGTTAGAAGGAAAGAAGGTAAAGCAGGCAAGAAGAAGTAAATCATGGTACATTTTGTCATTGTTTTATTGTATTTTTCTTAGAGCTATTTTGAAGTTAGGTTCATTTTGCAAGTGACTTGACAAATTTTTTATCTTGTGGATCCCTTTAAATATAAGAGTCACACAATTTGAATATTGTATGTAATCTGGTTTCCCTTACATTTCTTTTAAAGCTGTTCTGAAAAA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  K  L  E  K  E  D  G  G  I  L  R  V  R  K  A  M  E  T  R  R  A  N  Q  M  H  G  L  F  R :   T  L  T  D  N  M  V  V  G  V  S  K  G  F  E  K  K  L  Q  L  V  G  V  G  Y  R  A  T  I  E  G  K  D  I  V  L  N  L  G  F  S  H  P  V  R  M  E  V  P  A  G  L  Q  V  K  V  E  E  N  T  R  I  T  V  S  G  Y  D  K  S  E  I  G  Q  F  A  A  S  I  R  K  W  R  P  P  E  P  Y  K  G  K  G  V  K  Y  A  D  E  I  V  R  R  K  E  G  K  A  G  K  K  K  *  I  M  V  H  F  V  I  V  L  L  Y  F  S  *  S  Y  F  E  V  R  F  I  L  Q  V  T  *  Q  I  F  Y  L  V  D  P  F  K  Y  K  S  H  T  I  *  I  L  Y  V  I  W  F  P  L  H  F  F  *  S  C  S  E  K </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  S  L  R  R  K  M  E  V  F  *  G  S  E  K  P  W  R  Q  D  A  L  I  R  C  M  V  Y  S   : G  L  *  L  I  T  W  *  S  A  F  P  K  D  S  R  R  N  F  N  W  *  G  L  D  I  V  Q  P  S  K  G  K  T  *  F  S  I  S  D  F  L  I  P  L  G  W  K  F  L  L  D  C  K  L  R  L  K  K  T  P  E  S  L  *  V  V  T  I  S  Q  R  S  V  N  L  Q  L  Q  L  E  N  G  D  L  Q  S  H  T  K  V  K  E  *  N  M  L  M  K  *  L  E  G  K  K  V  K  Q  A  R  R  S  K  S  W  Y  I  L  S  L  F  Y  C  I  F  L  R  A  I  L  K  L  G  S  F  C  K  *  L  D  K  F  F  I  L  W  I  P  L  N  I  R  V  T  Q  F  E  Y  C  M  *  S  G  F  P  Y  I  S  F  K  A  V  L  K   </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  A  *  E  G  R  W  R  Y  S  K  G  Q  K  S  H  G  D  K  T  R  *  S  D  A  W  F  I  Q  :  D  S  N  *  *  H  G  S  R  R  F  Q  R  I  R  E  E  T  S  I  G  R  G  W  I  S  C  N  H  R  R  E  R  H  S  S  Q  S  R  I  F  S  S  R  *  D  G  S  S  C  W  T  A  S  *  G  *  R  K  H  Q  N  H  C  K  W  L  R  *  V  R  D  R  S  I  C  S  F  N  *  K  M  E  T  S  R  A  I  Q  R  *  R  S  E  I  C  *  *  N  S  *  K  E  R  R  *  S  R  Q  E  E  V  N  H  G  T  F  C  H  C  F  I  V  F  F  L  E  L  F  *  S  *  V  H  F  A  S  D  L  T  N  F  L  S  C  G  S  L  *  I  *  E  S  H  N  L  N  I  V  C  N  L  V  S  L  T  F  L  L  K  L  F  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35012" stop="35148"/>
                    <exon start="37539" stop="37875"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFKLEKEDGGILRVRKAMETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRATIEGKDIVLNLGFSHPVRMEVPAGLQVKVEENTRITVSGYDKSEIGQFAASIRKWRPPEPYKGKGVKYADEIVRRKEGKAGKKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="42228" PGL_stop="64745"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42228" e_stop="42612"/>
            <exon e_start="43134" e_stop="43254"/>
            <exon e_start="43343" e_stop="43516"/>
            <exon e_start="43659" e_stop="43818"/>
            <exon e_start="44161" e_stop="44237"/>
            <exon e_start="44299" e_stop="44352"/>
            <exon e_start="44449" e_stop="44841"/>
            <exon e_start="44924" e_stop="45205"/>
            <exon e_start="45302" e_stop="45618"/>
            <exon e_start="45714" e_stop="45878"/>
            <exon e_start="64036" e_stop="64296"/>
            <exon e_start="64373" e_stop="64548"/>
            <exon e_start="64617" e_stop="64745"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.995"/>
          <exon-intron don_prob="0.911" acc_prob="0.992" e_score="0.992"/>
          <exon-intron don_prob="0.950" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="0.988"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.987"/>
          <exon-intron don_prob="0.957" acc_prob="0.992" e_score="0.981"/>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.785" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.635" acc_prob="0.878" e_score="0.991"/>
          <exon-intron don_prob="0.882" acc_prob="0.889" e_score="0.891"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="0.938"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="42228" e_stop="42612" e_length="385"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42613" i_stop="43133" i_length="521"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="43134" e_stop="43254" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.911" acc_prob="0.992">
            <gDNA_intron_boundary i_start="43255" i_stop="43342" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43343" e_stop="43516" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43517" i_stop="43658" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="43659" e_stop="43818" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="43819" i_stop="44160" i_length="342"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="44161" e_stop="44237" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="44238" i_stop="44298" i_length="61"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="44299" e_stop="44352" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.957" acc_prob="0.992">
            <gDNA_intron_boundary i_start="44353" i_stop="44448" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="44449" e_stop="44841" e_length="393"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44842" i_stop="44923" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44924" e_stop="45205" e_length="282"/>
          </exon>
          <intron i_serial="8" don_prob="0.785" acc_prob="0.915">
            <gDNA_intron_boundary i_start="45206" i_stop="45301" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="0.991">
            <gDNA_exon_boundary e_start="45302" e_stop="45618" e_length="317"/>
          </exon>
          <intron i_serial="9" don_prob="0.635" acc_prob="0.878">
            <gDNA_intron_boundary i_start="45619" i_stop="45713" i_length="95"/>
          </intron>
          <exon e_serial="10" e_score="0.891">
            <gDNA_exon_boundary e_start="45714" e_stop="45878" e_length="165"/>
          </exon>
          <intron i_serial="10" don_prob="0.882" acc_prob="0.889">
            <gDNA_intron_boundary i_start="45879" i_stop="64035" i_length="18157"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="64036" e_stop="64296" e_length="261"/>
          </exon>
          <intron i_serial="11" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64297" i_stop="64372" i_length="76"/>
          </intron>
          <exon e_serial="12" e_score="0.938">
            <gDNA_exon_boundary e_start="64373" e_stop="64548" e_length="176"/>
          </exon>
          <intron i_serial="12" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="64549" i_stop="64616" i_length="68"/>
          </intron>
          <exon e_serial="13" e_score="0.977">
            <gDNA_exon_boundary e_start="64617" e_stop="64745" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42228" stop="42612"/>
              <exon start="43134" stop="43254"/>
              <exon start="43343" stop="43516"/>
              <exon start="43659" stop="43818"/>
              <exon start="44161" stop="44237"/>
              <exon start="44299" stop="44352"/>
              <exon start="44449" stop="44841"/>
              <exon start="44924" stop="45205"/>
              <exon start="45302" stop="45618"/>
              <exon start="45714" stop="45878"/>
              <exon start="64036" stop="64176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42228" stop="42612"/>
              <exon start="43134" stop="43254"/>
              <exon start="43343" stop="43516"/>
              <exon start="43659" stop="43766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42229" stop="42612"/>
              <exon start="43134" stop="43241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64171" stop="64296"/>
              <exon start="64373" stop="64548"/>
              <exon start="64617" stop="64745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGTTCAAAATGGAGCTAACTAATTCAAGAGGTACTAGTTTAAGAGAAAAAATAATCAGGGGAAGTAGTTTGAGAGGGAGCTTAAGTAGAAAGAGGAATAGTACTAATAACTCCAGGTGGAATGGCAATGATGGGGAGATTTTTAATCGTTCAACGAGAGACGAAGATGATGAAGAGGCTCTTAAATGGGCAGCTCTTGAAAAGCTTCCAACGTTTGATCGTTTGAGAAAAGGTCTCTTGTTTGGATCACAAGGTGCATCTGCTGAAATTGATATACATGATATTGGTTTTCAAGAAAGAAACAAGTTGCTTGAAAGGCTTGTCAAAGTTGCAGATGAGGATAATGAGAAGCTCCTGTTGAAACTCAAGCAAAGAATTGACAG : AGTTGGGATAGATTTGCCAGAAATAGAAGTAAGATATGAGCATTTAACTATTGAGGCAGATGCATATGTAGGAAGTAGAGCTTTGCCTACATTTATCAACTTTATCTCTAATTTTTTTGAG : GATATATTGAACTCTGTCCATATCCTACCGAGTCGAAAGAGGAAACTAACTATTCTTAATGATGTGAGTGGTATCATTAAGCCTCGCAGATTGACTTTGCTTTTAGGACCTCCAAGTTCCGGGAAAACTACATTATTATTAGCTTTGGCCGGAAAGCTCGACTCTGCCCTTAAG : GTTACTGGAAAAGTGACGTATAATGGACATGAAATGAATGAGTTTGTGCCGCAAAGAACAGCGGCTTATATTAGCCAGTATGATTTACATATTGGAGAAATGACTGTGAGAGAAACCTTGGAATTCTCCGCCAGATGCCAGGGAGTTGGATCGAGTTATG : AGCTGTTGGTTGAACTGTCAAGAAGAGAGAAAGCAGCTAAAATCAAGCCAGATCCTGATATTGATATTTTCATGAAG : GCATTAGCAACAGAGGGACAAGAAGCAGTTTTTGTTACAGATTATGTTCTGAAG : CTTTTGGGGCTGGATATTTGTGCAGATACTATGGTGGGAGATGAAATGATTAGGGGTATTTCAGGAGGACAAAAGAAGCGTGTGACAACCGGTGAAATGCTCGTTGGACCGTCCAAGGCACTTTTCATGGATGAAATCTCAACTGGATTGGATAGTTCTACTACTTACTCAATTGTGAACTCACTAAGACAATCTGTGCAAATCTTGCACGGAACTGCTGTGATATCTCTCTTGCAGCCAGCACCCGAGACGTACAACTTGTTCGACGACATTATTCTGTTATCAGATGAGAAAATTGTCTATCAGGGACCTCGAGAGGATGTCCTTGGCTTCTTCGAGTCCATGGGGTTCAAATGTCCAGATAGAAAAGGCGTGGCCGACTTCTTGCAAGAA : GTGACTTCAAAGAAAGATCAACAGCAATATTGGGTGAGGAGGGATGAAACTTACCGGTTTATCACTTCAAAAGAATTTGCTGAGGCACATCAATCGTTCCATGTTGGGAGGAAACTCGCGGATAAGCTTGCAGCTTCATATGACAAGAGCAAAAGCCATCCTGCTGCTTTGTCAACTCAAAAGTATGGTATAGGGAAGAAACAACTCTTAAAGGTCTGCACTGAACGAGAACTCTTACTAATGAAGAGGAACTCATTTGTTTACATCTTCAAGTTCATTCAG : CTTACAATTGTGGCACTCATATCAATGACTCTCTTTTTCCGTACTAAGATGCCGCGTGATACAATTGAAGATGGAGTAAAATATGTTGGTGCCCTCTTTTTGGTTGTCACTCAGATTATGTTTAACGGAATGGCTGAGATCGCCCTGACAATTTACAAACTTCCTGTCTTCTACAAGCAAAGGGACCTTCTCTTTTACCCTTCATGGGCTTATGCAGTGCCCACATGGATACTCAAAATGCCTATAACATTTGCTGAAGTTGGACTTTGGGTGTTCCTCACTTACTATGTCATAGGATTTGATCCGAGCGCTGCAAG : ATTTTTCAAACAGTTTTTGCTACTTCTATCACAAAACCAGATGGGCATCAGCATTGTTTCGCTTCATTGGGGCAGCGGGAAGGACCATGGGAAGTTGCTAATCCATTTGGAACCTTTGTTCTGCTTTTGCAGTTTGCATTGGGTGGGTTTCTTTCTCTTCCCAAG : TTGATGTGAAGAAATGGTGGTTATGGGGTTACTGGTCATCACCGATGATGTATGCTATGAATTCAATTCTTGTGAATGAATTTGATGGAAAAAAGTGGAAACAAATTGCACCAAATGGAACTGATTCACTTGGAGTTACAGTTGTAAGATCTCGAGGGTTCTTCACAAATGCATACTGGTACTGGATAGGCGTTGGTGCACAAATTGGTTTCACAATCGTCTTTAACATCTGCTACAGTATTGCACTCGCTTATCTCAACC : CATTTGGTAAGCCGCAAGGTATGATATCAGAAGACAGCAATGATGCCAAAACAACGAGCACTGAGAAAGAAGTGTCCACTAGTGAGGGCCAGAATAAGAAAAAGGGAATGGTTCTTCCATTTGAACCGCATTCTATAACCTTCGATGAAGTTACATACTCTGTTGACATGCCTCAG : GAAATGAAAAATCAAGGTGTCACTGAAGATAGATTGGTACTTCTGAATGGTGTATCTGGAGCTTTCAGGCCCGGTGTTTTGACAGCATTGATGGGAGTTAGTGGCGCTGGAAAAACAACGTTAATGGAT</gDNA_template>
            <first_frame> F  G  S  K  W  S  *  L  I  Q  E  V  L  V  *  E  K  K  *  S  G  E  V  V  *  E  G  A  *  V  E  R  G  I  V  L  I  T  P  G  G  M  A  M  M  G  R  F  L  I  V  Q  R  E  T  K  M  M  K  R  L  L  N  G  Q  L  L  K  S  F  Q  R  L  I  V  *  E  K  V  S  C  L  D  H  K  V  H  L  L  K  L  I  Y  M  I  L  V  F  K  K  E  T  S  C  L  K  G  L  S  K  L  Q  M  R  I  M  R  S  S  C  *  N  S  S  K  E  L  T   : E  L  G  *  I  C  Q  K  *  K  *  D  M  S  I  *  L  L  R  Q  M  H  M  *  E  V  E  L  C  L  H  L  S  T  L  S  L  I  F  L  R :   I  Y  *  T  L  S  I  S  Y  R  V  E  R  G  N  *  L  F  L  M  M  *  V  V  S  L  S  L  A  D  *  L  C  F  *  D  L  Q  V  P  G  K  L  H  Y  Y  *  L  W  P  E  S  S  T  L  P  L  R :   L  L  E  K  *  R  I  M  D  M  K  *  M  S  L  C  R  K  E  Q  R  L  I  L  A  S  M  I  Y  I  L  E  K  *  L  *  E  K  P  W  N  S  P  P  D  A  R  E  L  D  R  V  M  :  S  C  W  L  N  C  Q  E  E  R  K  Q  L  K  S  S  Q  I  L  I  L  I  F  S  *  R :   H  *  Q  Q  R  D  K  K  Q  F  L  L  Q  I  M  F  *  S :   F  W  G  W  I  F  V  Q  I  L  W  W  E  M  K  *  L  G  V  F  Q  E  D  K  R  S  V  *  Q  P  V  K  C  S  L  D  R  P  R  H  F  S  W  M  K  S  Q  L  D  W  I  V  L  L  L  T  Q  L  *  T  H  *  D  N  L  C  K  S  C  T  E  L  L  *  Y  L  S  C  S  Q  H  P  R  R  T  T  C  S  T  T  L  F  C  Y  Q  M  R  K  L  S  I  R  D  L  E  R  M  S  L  A  S  S  S  P  W  G  S  N  V  Q  I  E  K  A  W  P  T  S  C  K  K :   *  L  Q  R  K  I  N  S  N  I  G  *  G  G  M  K  L  T  G  L  S  L  Q  K  N  L  L  R  H  I  N  R  S  M  L  G  G  N  S  R  I  S  L  Q  L  H  M  T  R  A  K  A  I  L  L  L  C  Q  L  K  S  M  V  *  G  R  N  N  S  *  R  S  A  L  N  E  N  S  Y  *  *  R  G  T  H  L  F  T  S  S  S  S  F  S :   L  Q  L  W  H  S  Y  Q  *  L  S  F  S  V  L  R  C  R  V  I  Q  L  K  M  E  *  N  M  L  V  P  S  F  W  L  S  L  R  L  C  L  T  E  W  L  R  S  P  *  Q  F  T  N  F  L  S  S  T  S  K  G  T  F  S  F  T  L  H  G  L  M  Q  C  P  H  G  Y  S  K  C  L  *  H  L  L  K  L  D  F  G  C  S  S  L  T  M  S  *  D  L  I  R  A  L  Q   : D  F  S  N  S  F  C  Y  F  Y  H  K  T  R  W  A  S  A  L  F  R  F  I  G  A  A  G  R  T  M  G  S  C  *  S  I  W  N  L  C  S  A  F  A  V  C  I  G  W  V  S  F  S  S  Q   : V  D  V  K  K  W  W  L  W  G  Y  W  S  S  P  M  M  Y  A  M  N  S  I  L  V  N  E  F  D  G  K  K  W  K  Q  I  A  P  N  G  T  D  S  L  G  V  T  V  V  R  S  R  G  F  F  T  N  A  Y  W  Y  W  I  G  V  G  A  Q  I  G  F  T  I  V  F  N  I  C  Y  S  I  A  L  A  Y  L  N   : P  F  G  K  P  Q  G  M  I  S  E  D  S  N  D  A  K  T  T  S  T  E  K  E  V  S  T  S  E  G  Q  N  K  K  K  G  M  V  L  P  F  E  P  H  S  I  T  F  D  E  V  T  Y  S  V  D  M  P  Q  :  E  M  K  N  Q  G  V  T  E  D  R  L  V  L  L  N  G  V  S  G  A  F  R  P  G  V  L  T  A  L  M  G  V  S  G  A  G  K  T  T  L  M  D </first_frame>
            <second_frame>  L  V  Q  N  G  A  N  *  F  K  R  Y  *  F  K  R  K  N  N  Q  G  K  *  F  E  R  E  L  K  *  K  E  E  *  Y  *  *  L  Q  V  E  W  Q  *  W  G  D  F  *  S  F  N  E  R  R  R  *  *  R  G  S  *  M  G  S  S  *  K  A  S  N  V  *  S  F  E  K  R  S  L  V  W  I  T  R  C  I  C  *  N  *  Y  T  *  Y  W  F  S  R  K  K  Q  V  A  *  K  A  C  Q  S  C  R  *  G  *  *  E  A  P  V  E  T  Q  A  K  N  *  Q  :  S  W  D  R  F  A  R  N  R  S  K  I  *  A  F  N  Y  *  G  R  C  I  C  R  K  *  S  F  A  Y  I  Y  Q  L  Y  L  *  F  F  *   : G  Y  I  E  L  C  P  Y  P  T  E  S  K  E  E  T  N  Y  S  *  *  C  E  W  Y  H  *  A  S  Q  I  D  F  A  F  R  T  S  K  F  R  E  N  Y  I  I  I  S  F  G  R  K  A  R  L  C  P  *   : G  Y  W  K  S  D  V  *  W  T  *  N  E  *  V  C  A  A  K  N  S  G  L  Y  *  P  V  *  F  T  Y  W  R  N  D  C  E  R  N  L  G  I  L  R  Q  M  P  G  S  W  I  E  L  * :   A  V  G  *  T  V  K  K  R  E  S  S  *  N  Q  A  R  S  *  Y  *  Y  F  H  E   : G  I  S  N  R  G  T  R  S  S  F  C  Y  R  L  C  S  E   : A  F  G  A  G  Y  L  C  R  Y  Y  G  G  R  *  N  D  *  G  Y  F  R  R  T  K  E  A  C  D  N  R  *  N  A  R  W  T  V  Q  G  T  F  H  G  *  N  L  N  W  I  G  *  F  Y  Y  L  L  N  C  E  L  T  K  T  I  C  A  N  L  A  R  N  C  C  D  I  S  L  A  A  S  T  R  D  V  Q  L  V  R  R  H  Y  S  V  I  R  *  E  N  C  L  S  G  T  S  R  G  C  P  W  L  L  R  V  H  G  V  Q  M  S  R  *  K  R  R  G  R  L  L  A  R   : S  D  F  K  E  R  S  T  A  I  L  G  E  E  G  *  N  L  P  V  Y  H  F  K  R  I  C  *  G  T  S  I  V  P  C  W  E  E  T  R  G  *  A  C  S  F  I  *  Q  E  Q  K  P  S  C  C  F  V  N  S  K  V  W  Y  R  E  E  T  T  L  K  G  L  H  *  T  R  T  L  T  N  E  E  E  L  I  C  L  H  L  Q  V  H  S   : A  Y  N  C  G  T  H  I  N  D  S  L  F  P  Y  *  D  A  A  *  Y  N  *  R  W  S  K  I  C  W  C  P  L  F  G  C  H  S  D  Y  V  *  R  N  G  *  D  R  P  D  N  L  Q  T  S  C  L  L  Q  A  K  G  P  S  L  L  P  F  M  G  L  C  S  A  H  M  D  T  Q  N  A  Y  N  I  C  *  S  W  T  L  G  V  P  H  L  L  C  H  R  I  *  S  E  R  C  K  :  I  F  Q  T  V  F  A  T  S  I  T  K  P  D  G  H  Q  H  C  F  A  S  L  G  Q  R  E  G  P  W  E  V  A  N  P  F  G  T  F  V  L  L  L  Q  F  A  L  G  G  F  L  S  L  P  K  :  L  M  *  R  N  G  G  Y  G  V  T  G  H  H  R  *  C  M  L  *  I  Q  F  L  *  M  N  L  M  E  K  S  G  N  K  L  H  Q  M  E  L  I  H  L  E  L  Q  L  *  D  L  E  G  S  S  Q  M  H  T  G  T  G  *  A  L  V  H  K  L  V  S  Q  S  S  L  T  S  A  T  V  L  H  S  L  I  S  T  :  H  L  V  S  R  K  V  *  Y  Q  K  T  A  M  M  P  K  Q  R  A  L  R  K  K  C  P  L  V  R  A  R  I  R  K  R  E  W  F  F  H  L  N  R  I  L  *  P  S  M  K  L  H  T  L  L  T  C  L  R :   K  *  K  I  K  V  S  L  K  I  D  W  Y  F  *  M  V  Y  L  E  L  S  G  P  V  F  *  Q  H  *  W  E  L  V  A  L  E  K  Q  R  *  W   </second_frame>
            <third_frame>   W  F  K  M  E  L  T  N  S  R  G  T  S  L  R  E  K  I  I  R  G  S  S  L  R  G  S  L  S  R  K  R  N  S  T  N  N  S  R  W  N  G  N  D  G  E  I  F  N  R  S  T  R  D  E  D  D  E  E  A  L  K  W  A  A  L  E  K  L  P  T  F  D  R  L  R  K  G  L  L  F  G  S  Q  G  A  S  A  E  I  D  I  H  D  I  G  F  Q  E  R  N  K  L  L  E  R  L  V  K  V  A  D  E  D  N  E  K  L  L  L  K  L  K  Q  R  I  D  R :   V  G  I  D  L  P  E  I  E  V  R  Y  E  H  L  T  I  E  A  D  A  Y  V  G  S  R  A  L  P  T  F  I  N  F  I  S  N  F  F  E  :  D  I  L  N  S  V  H  I  L  P  S  R  K  R  K  L  T  I  L  N  D  V  S  G  I  I  K  P  R  R  L  T  L  L  L  G  P  P  S  S  G  K  T  T  L  L  L  A  L  A  G  K  L  D  S  A  L  K  :  V  T  G  K  V  T  Y  N  G  H  E  M  N  E  F  V  P  Q  R  T  A  A  Y  I  S  Q  Y  D  L  H  I  G  E  M  T  V  R  E  T  L  E  F  S  A  R  C  Q  G  V  G  S  S  Y   : E  L  L  V  E  L  S  R  R  E  K  A  A  K  I  K  P  D  P  D  I  D  I  F  M  K  :  A  L  A  T  E  G  Q  E  A  V  F  V  T  D  Y  V  L  K  :  L  L  G  L  D  I  C  A  D  T  M  V  G  D  E  M  I  R  G  I  S  G  G  Q  K  K  R  V  T  T  G  E  M  L  V  G  P  S  K  A  L  F  M  D  E  I  S  T  G  L  D  S  S  T  T  Y  S  I  V  N  S  L  R  Q  S  V  Q  I  L  H  G  T  A  V  I  S  L  L  Q  P  A  P  E  T  Y  N  L  F  D  D  I  I  L  L  S  D  E  K  I  V  Y  Q  G  P  R  E  D  V  L  G  F  F  E  S  M  G  F  K  C  P  D  R  K  G  V  A  D  F  L  Q  E  :  V  T  S  K  K  D  Q  Q  Q  Y  W  V  R  R  D  E  T  Y  R  F  I  T  S  K  E  F  A  E  A  H  Q  S  F  H  V  G  R  K  L  A  D  K  L  A  A  S  Y  D  K  S  K  S  H  P  A  A  L  S  T  Q  K  Y  G  I  G  K  K  Q  L  L  K  V  C  T  E  R  E  L  L  L  M  K  R  N  S  F  V  Y  I  F  K  F  I  Q  :  L  T  I  V  A  L  I  S  M  T  L  F  F  R  T  K  M  P  R  D  T  I  E  D  G  V  K  Y  V  G  A  L  F  L  V  V  T  Q  I  M  F  N  G  M  A  E  I  A  L  T  I  Y  K  L  P  V  F  Y  K  Q  R  D  L  L  F  Y  P  S  W  A  Y  A  V  P  T  W  I  L  K  M  P  I  T  F  A  E  V  G  L  W  V  F  L  T  Y  Y  V  I  G  F  D  P  S  A  A  R :   F  F  K  Q  F  L  L  L  L  S  Q  N  Q  M  G  I  S  I  V  S  L  H  W  G  S  G  K  D  H  G  K  L  L  I  H  L  E  P  L  F  C  F  C  S  L  H  W  V  G  F  F  L  F  P  S :   *  C  E  E  M  V  V  M  G  L  L  V  I  T  D  D  V  C  Y  E  F  N  S  C  E  *  I  *  W  K  K  V  E  T  N  C  T  K  W  N  *  F  T  W  S  Y  S  C  K  I  S  R  V  L  H  K  C  I  L  V  L  D  R  R  W  C  T  N  W  F  H  N  R  L  *  H  L  L  Q  Y  C  T  R  L  S  Q  P :   I  W  *  A  A  R  Y  D  I  R  R  Q  Q  *  C  Q  N  N  E  H  *  E  R  S  V  H  *  *  G  P  E  *  E  K  G  N  G  S  S  I  *  T  A  F  Y  N  L  R  *  S  Y  I  L  C  *  H  A  S   : G  N  E  K  S  R  C  H  *  R  *  I  G  T  S  E  W  C  I  W  S  F  Q  A  R  C  F  D  S  I  D  G  S  *  W  R  W  K  N  N  V  N  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42230" stop="42612"/>
                    <exon start="43134" stop="43254"/>
                    <exon start="43343" stop="43516"/>
                    <exon start="43659" stop="43818"/>
                    <exon start="44161" stop="44237"/>
                    <exon start="44299" stop="44352"/>
                    <exon start="44449" stop="44841"/>
                    <exon start="44924" stop="45205"/>
                    <exon start="45302" stop="45618"/>
                    <exon start="45714" stop="45878"/>
                    <exon start="64036" stop="64039"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2127</number_coding_nucleotides>
                  <number_encoded_amino_acids>709</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WFKMELTNSRGTSLREKIIRGSSLRGSLSRKRNSTNNSRWNGNDGEIFNRSTRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGASAEIDIHDIGFQERNKLLERLVKVADEDNEKLLLKLKQRIDRVGIDLPEIEVRYEHLTIEADAYVGSRALPTFINFISNFFEDILNSVHILPSRKRKLTILNDVSGIIKPRRLTLLLGPPSSGKTTLLLALAGKLDSALKVTGKVTYNGHEMNEFVPQRTAAYISQYDLHIGEMTVRETLEFSARCQGVGSSYELLVELSRREKAAKIKPDPDIDIFMKALATEGQEAVFVTDYVLKLLGLDICADTMVGDEMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILHGTAVISLLQPAPETYNLFDDIILLSDEKIVYQGPREDVLGFFESMGFKCPDRKGVADFLQEVTSKKDQQQYWVRRDETYRFITSKEFAEAHQSFHVGRKLADKLAASYDKSKSHPAALSTQKYGIGKKQLLKVCTERELLLMKRNSFVYIFKFIQLTIVALISMTLFFRTKMPRDTIEDGVKYVGALFLVVTQIMFNGMAEIALTIYKLPVFYKQRDLLFYPSWAYAVPTWILKMPITFAEVGLWVFLTYYVIGFDPSAARFFKQFLLLLSQNQMGISIVSLHWGSGKDHGKLLIHLEPLFCFCSLHWVGFFLFPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="57106" e_stop="57489"/>
            <exon e_start="57599" e_stop="57872"/>
            <exon e_start="59228" e_stop="59636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.902" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57106" e_stop="57489" e_length="384"/>
          </exon>
          <intron i_serial="1" don_prob="0.902" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57490" i_stop="57598" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57599" e_stop="57872" e_length="274"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.984">
            <gDNA_intron_boundary i_start="57873" i_stop="59227" i_length="1355"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="59228" e_stop="59636" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57106" stop="57489"/>
              <exon start="57599" stop="57774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57106" stop="57489"/>
              <exon start="57599" stop="57701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57708" stop="57872"/>
              <exon start="59228" stop="59636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGACTGCGTCCATGATTGCCAGGTGGCAGGATGTTGGTTTCACACATGGAGTCATGAACACTGATAATATGAGCGTGTTAGGACTCACTATTGACTATGGTCCCTTTGGCTTTTTAGATTCTTTTGATCCCAGTTACACACCAAATACCACTGATCTTCCTGGCAGAAGATATTGTTTTGCAAATCAGCCAGATGTAGGTTTATGGAATATTGCGCAGTTTACCTCTGCTCTATCTACTGCCGAGTTGCTTAGTGATAAAGAGGCAGATTATGCTATGGAAAG : ATATGGTAACAAATTCATGGATGATTATCAAGATATCATGACCAGGAAACTTGGTCTGACAAAGTACAATAAAAAGTTGATTGGTGAACTACTCAAGAATATGGTCTCCGATAAAGTTGATTACACAAATTTCTTTCGATCTCTATCAAACATCAAAGCTGATCCTGCAATTCCAGAGGACCAATTATTGATTCCTCTCAAAGATGTTCTCTTAGATATTGGTATGGAACGCAGGGAAGCCTGGACTAACTGGATAAAGTCATATATACAAGAG : CTCTCCACAACTGGTGTATTAGATGAGGAGAGGAAAGTTTCAATGAATTTTGTAAATCCAAAGTACATCCTCAGAAACTATCTATGCCAGAATGCCATTGATGCAGCAGAACAAGGCGATTTTGAGGAGGTTCGGCAGTTATTGAAGGTTATGCAATGTCCATTTGATGAACAGCCTGGTATGGAGAAATATGCACGCTTGCCTCCAGCTTGGGCTCATCGTCCGGGTGTATGCATGCTTTCTTGTTCCTCATAAGGTTTCCGGGTGTATGCTTATGCTTTCTTGTTCCTCATAATATCTCCACTATGTAATACCAGAGTTTCACTTGTATATATATAACTAGTCTCCCGGCACGTGCGTTGCACGTGTATTCCAAATAAAAATCAATAAAAAAAATAAATGAAAAAGT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  D  C  V  H  D  C  Q  V  A  G  C  W  F  H  T  W  S  H  E  H  *  *  Y  E  R  V  R  T  H  Y  *  L  W  S  L  W  L  F  R  F  F  *  S  Q  L  H  T  K  Y  H  *  S  S  W  Q  K  I  L  F  C  K  S  A  R  C  R  F  M  E  Y  C  A  V  Y  L  C  S  I  Y  C  R  V  A  *  *  *  R  G  R  L  C  Y  G  K  :  I  W  *  Q  I  H  G  *  L  S  R  Y  H  D  Q  E  T  W  S  D  K  V  Q  *  K  V  D  W  *  T  T  Q  E  Y  G  L  R  *  S  *  L  H  K  F  L  S  I  S  I  K  H  Q  S  *  S  C  N  S  R  G  P  I  I  D  S  S  Q  R  C  S  L  R  Y  W  Y  G  T  Q  G  S  L  D  *  L  D  K  V  I  Y  T  R   : A  L  H  N  W  C  I  R  *  G  E  E  S  F  N  E  F  C  K  S  K  V  H  P  Q  K  L  S  M  P  E  C  H  *  C  S  R  T  R  R  F  *  G  G  S  A  V  I  E  G  Y  A  M  S  I  *  *  T  A  W  Y  G  E  I  C  T  L  A  S  S  L  G  S  S  S  G  C  M  H  A  F  L  F  L  I  R  F  P  G  V  C  L  C  F  L  V  P  H  N  I  S  T  M  *  Y  Q  S  F  T  C  I  Y  I  T  S  L  P  A  R  A  L  H  V  Y  S  K  *  K  S  I  K  K  I  N  E  K   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  R  T  A  S  M  I  A  R  W  Q  D  V  G  F  T  H  G  V  M  N  T  D  N  M  S  V  L  G  L  T  I  D  Y  G  P  F  G  F  L  D  S  F  D  P  S  Y  T  P  N  T  T  D  L  P  G  R  R  Y  C  F  A  N  Q  P  D  V  G  L  W  N  I  A  Q  F  T  S  A  L  S  T  A  E  L  L  S  D  K  E  A  D  Y  A  M  E  R :   Y  G  N  K  F  M  D  D  Y  Q  D  I  M  T  R  K  L  G  L  T  K  Y  N  K  K  L  I  G  E  L  L  K  N  M  V  S  D  K  V  D  Y  T  N  F  F  R  S  L  S  N  I  K  A  D  P  A  I  P  E  D  Q  L  L  I  P  L  K  D  V  L  L  D  I  G  M  E  R  R  E  A  W  T  N  W  I  K  S  Y  I  Q  E  :  L  S  T  T  G  V  L  D  E  E  R  K  V  S  M  N  F  V  N  P  K  Y  I  L  R  N  Y  L  C  Q  N  A  I  D  A  A  E  Q  G  D  F  E  E  V  R  Q  L  L  K  V  M  Q  C  P  F  D  E  Q  P  G  M  E  K  Y  A  R  L  P  P  A  W  A  H  R  P  G  V  C  M  L  S  C  S  S  *  G  F  R  V  Y  A  Y  A  F  L  F  L  I  I  S  P  L  C  N  T  R  V  S  L  V  Y  I  *  L  V  S  R  H  V  R  C  T  C  I  P  N  K  N  Q  *  K  K  *  M  K  K  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  G  L  R  P  *  L  P  G  G  R  M  L  V  S  H  M  E  S  *  T  L  I  I  *  A  C  *  D  S  L  L  T  M  V  P  L  A  F  *  I  L  L  I  P  V  T  H  Q  I  P  L  I  F  L  A  E  D  I  V  L  Q  I  S  Q  M  *  V  Y  G  I  L  R  S  L  P  L  L  Y  L  L  P  S  C  L  V  I  K  R  Q  I  M  L  W  K   : D  M  V  T  N  S  W  M  I  I  K  I  S  *  P  G  N  L  V  *  Q  S  T  I  K  S  *  L  V  N  Y  S  R  I  W  S  P  I  K  L  I  T  Q  I  S  F  D  L  Y  Q  T  S  K  L  I  L  Q  F  Q  R  T  N  Y  *  F  L  S  K  M  F  S  *  I  L  V  W  N  A  G  K  P  G  L  T  G  *  S  H  I  Y  K  S :   S  P  Q  L  V  Y  *  M  R  R  G  K  F  Q  *  I  L  *  I  Q  S  T  S  S  E  T  I  Y  A  R  M  P  L  M  Q  Q  N  K  A  I  L  R  R  F  G  S  Y  *  R  L  C  N  V  H  L  M  N  S  L  V  W  R  N  M  H  A  C  L  Q  L  G  L  I  V  R  V  Y  A  C  F  L  V  P  H  K  V  S  G  C  M  L  M  L  S  C  S  S  *  Y  L  H  Y  V  I  P  E  F  H  L  Y  I  Y  N  *  S  P  G  T  C  V  A  R  V  F  Q  I  K  I  N  K  K  N  K  *  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57107" stop="57489"/>
                    <exon start="57599" stop="57872"/>
                    <exon start="59228" stop="59482"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFRTASMIARWQDVGFTHGVMNTDNMSVLGLTIDYGPFGFLDSFDPSYTPNTTDLPGRRYCFANQPDVGLWNIAQFTSALSTAELLSDKEADYAMERYGNKFMDDYQDIMTRKLGLTKYNKKLIGELLKNMVSDKVDYTNFFRSLSNIKADPAIPEDQLLIPLKDVLLDIGMERREAWTNWIKSYIQELSTTGVLDEERKVSMNFVNPKYILRNYLCQNAIDAAEQGDFEEVRQLLKVMQCPFDEQPGMEKYARLPPAWAHRPGVCMLSCSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="52144" e_stop="52767"/>
            <exon e_start="53039" e_stop="53076"/>
            <exon e_start="53170" e_stop="53269"/>
            <exon e_start="54526" e_stop="54575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="52144" e_stop="52767" e_length="624"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52768" i_stop="53038" i_length="271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53039" e_stop="53076" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="53077" i_stop="53169" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53170" e_stop="53269" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="53270" i_stop="54525" i_length="1256"/>
          </intron>
          <exon e_serial="4" e_score="0.940">
            <gDNA_exon_boundary e_start="54526" e_stop="54575" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52144" stop="52767"/>
              <exon start="53039" stop="53076"/>
              <exon start="53170" stop="53269"/>
              <exon start="54526" stop="54575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTACACACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAGACGAACAACAGCTGAAAGTTCAGTGGTAGCTTGTCAATCGGAAAGCAATAACAAGAAGTTGAAGAAGCCAACTGTTGAAAAGGCAGAATCTGGTGTAGCTTCACCAGCTGATAGAGATTTCGTATCTGAGTCTGATTCGGAGACGCCGAGCAAGAAATCCACGAGGCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTAT : AATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGG : TCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAG : GCTGCTGATGGTGAGGACGATTACATTTGCAAGATTGTTGAATTCTTTGA</gDNA_template>
            <first_frame> C  T  H  C  T  F  A  A  A  A  A  T  Y  Y  F  I  F  S  D  I  P  M  P  S  K  R  K  S  S  P  A  T  K  P  E  S  S  S  G  S  R  K  S  K  R  L  V  V  E  R  P  D  P  V  V  A  Q  P  S  D  S  D  F  E  P  E  P  V  L  S  S  K  K  K  S  T  R  R  T  T  A  E  S  S  V  V  A  C  Q  S  E  S  N  N  K  K  L  K  K  P  T  V  E  K  A  E  S  G  V  A  S  P  A  D  R  D  F  V  S  E  S  D  S  E  T  P  S  K  K  S  T  R  R  A  A  V  K  V  E  P  L  V  D  S  V  A  G  S  D  F  V  E  E  E  E  V  D  G  M  E  L  G  S  L  K  K  S  L  S  I  S  P  S  K  R  K  P  K  R  A  E  K  V  K  D  E  E  C  V  L  A  G  D  P  V  P  D  A  E  A  R  L  K  W  P  H  R  Y  :  N  K  G  K  E  N  G  T  K  S  L  N  G :   Q  D  D  P  D  Q  L  I  Q  A  K  C  H  F  S  R  A  D  V  D  G  Q  I  Y  Y  L  E  D  D  A  H  V  K  :  A  A  D  G  E  D  D  Y  I  C  K  I  V  E  F  F   </first_frame>
            <second_frame>  V  H  T  A  R  S  P  P  P  L  R  P  T  T  S  S  F  Q  I  S  Q  C  Q  A  N  G  N  L  L  R  L  Q  S  Q  S  L  H  P  A  V  G  S  R  R  D  L  *  L  K  D  Q  I  Q  *  *  L  N  H  L  I  P  I  L  N  R  N  L  F  Y  H  Q  R  R  N  P  R  D  E  Q  Q  L  K  V  Q  W  *  L  V  N  R  K  A  I  T  R  S  *  R  S  Q  L  L  K  R  Q  N  L  V  *  L  H  Q  L  I  E  I  S  Y  L  S  L  I  R  R  R  R  A  R  N  P  R  G  E  L  Q  *  R  W  N  L  W  W  I  L  *  L  G  V  I  L  W  K  R  K  K  *  M  E  W  S  *  G  V  *  R  R  A  C  R  F  H  L  P  K  G  S  L  R  G  L  R  K  L  K  M  K  S  V  Y  L  P  V  T  L  F  R  M  Q  K  L  D  *  S  G  L  I  A  I :   I  K  G  K  K  M  V  P  R  A  *  M   : V  K  M  I  R  T  S  *  F  K  L  S  A  I  L  V  E  Q  M  L  M  V  R  Y  I  I  S  R  M  M  H  M  *  R :   L  L  M  V  R  T  I  T  F  A  R  L  L  N  S  L  </second_frame>
            <third_frame>   Y  T  L  H  V  R  R  R  R  C  D  L  L  L  H  L  F  R  Y  P  N  A  K  Q  T  E  I  F  S  G  Y  K  A  R  V  F  I  R  Q  *  E  V  E  E  T  C  S  *  K  T  R  S  S  S  S  S  T  I  *  F  R  F  *  T  G  T  C  F  I  I  K  E  E  I  H  E  T  N  N  S  *  K  F  S  G  S  L  S  I  G  K  Q  *  Q  E  V  E  E  A  N  C  *  K  G  R  I  W  C  S  F  T  S  *  *  R  F  R  I  *  V  *  F  G  D  A  E  Q  E  I  H  E  A  S  C  S  K  G  G  T  F  G  G  F  C  S  W  E  *  F  C  G  R  G  R  S  R  W  N  G  A  R  E  S  E  E  E  L  V  D  F  T  F  Q  K  E  A  *  E  G  *  E  S  *  R  *  R  V  C  T  C  R  *  P  C  S  G  C  R  S  *  T  E  V  A  S  S  L   : *  *  R  E  R  K  W  Y  Q  E  L  K  W  :  S  R  *  S  G  P  V  N  S  S  *  V  P  F  *  S  S  R  C  *  W  S  D  I  L  S  R  G  *  C  T  C  E   : G  C  *  W  *  G  R  L  H  L  Q  D  C  *  I  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52144" stop="52767"/>
                    <exon start="53039" stop="53076"/>
                    <exon start="53170" stop="53269"/>
                    <exon start="54526" stop="54573"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTHCTFAAAAATYYFIFSDIPMPSKRKSSPATKPESSSGSRKSKRLVVERPDPVVAQPSDSDFEPEPVLSSKKKSTRRTTAESSVVACQSESNNKKLKKPTVEKAESGVASPADRDFVSESDSETPSKKSTRRAAVKVEPLVDSVAGSDFVEEEEVDGMELGSLKKSLSISPSKRKPKRAEKVKDEECVLAGDPVPDAEARLKWPHRYNKGKENGTKSLNGQDDPDQLIQAKCHFSRADVDGQIYYLEDDAHVKAADGEDDYICKIVEFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="52128" e_stop="52373"/>
            <exon e_start="52539" e_stop="52767"/>
            <exon e_start="53039" e_stop="53076"/>
            <exon e_start="53170" e_stop="53269"/>
            <exon e_start="54526" e_stop="54633"/>
            <exon e_start="54717" e_stop="54836"/>
            <exon e_start="54917" e_stop="55000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.793" acc_prob="0.487" e_score="1.000"/>
          <exon-intron don_prob="0.706" acc_prob="0.820" e_score="0.975"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="52128" e_stop="52373" e_length="246"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52374" i_stop="52538" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52539" e_stop="52767" e_length="229"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52768" i_stop="53038" i_length="271"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53039" e_stop="53076" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="53077" i_stop="53169" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53170" e_stop="53269" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="53270" i_stop="54525" i_length="1256"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54526" e_stop="54633" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.793" acc_prob="0.487">
            <gDNA_intron_boundary i_start="54634" i_stop="54716" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="0.975">
            <gDNA_exon_boundary e_start="54717" e_stop="54836" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.706" acc_prob="0.820">
            <gDNA_intron_boundary i_start="54837" i_stop="54916" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.976">
            <gDNA_exon_boundary e_start="54917" e_stop="55000" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52128" stop="52373"/>
              <exon start="52539" stop="52767"/>
              <exon start="53039" stop="53076"/>
              <exon start="53170" stop="53269"/>
              <exon start="54526" stop="54633"/>
              <exon start="54717" stop="54836"/>
              <exon start="54917" stop="55000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738231" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCATCCTCCCGCCACTGTACACACTGCACGTTCGCCGCCGCCGCTGCGACCTACTACTTCATCTTTTCAGATATCCCAATGCCAAGCAAACGGAAATCTTCTCCGGCTACAAAGCCAGAGTCTTCATCCGGCAGTAGGAAGTCGAAGAGACTTGTAGTTGAAAGACCAGATCCAGTAGTAGCTCAACCATCTGATTCCGATTTTGAACCGGAACCTGTTTTATCATCAAAGAAGAAATCCACGAG : GCGAGCTGCAGTAAAGGTGGAACCTTTGGTGGATTCTGTAGCTGGGAGTGATTTTGTGGAAGAGGAAGAAGTAGATGGAATGGAGCTAGGGAGTCTGAAGAAGAGCTTGTCGATTTCACCTTCCAAAAGGAAGCCTAAGAGGGCTGAGAAAGTTAAAGATGAAGAGTGTGTACTTGCCGGTGACCCTGTTCCGGATGCAGAAGCTAGACTGAAGTGGCCTCATCGCTAT : AATAAAGGGAAAGAAAATGGTACCAAGAGCTTAAATGG : TCAAGATGATCCGGACCAGTTAATTCAAGCTAAGTGCCATTTTAGTCGAGCAGATGTTGATGGTCAGATATATTATCTCGAGGATGATGCACATGTGAAG : GCTGCTGATGGTGAGGACGATTACATTTGCAAGATTGTTGAATTCTTTGAAGCAGTTGACGGAGTGCAGTATTTTACAGCTCAGTGGTTTTACAGAGCTAAGGATACT : GTTATTAAAAGCCATGATCAGTTCATTGACAAAAAACGTGTATTCCTTTCTGAAATCAAGGATGACAATCCTCTTGATTGCCTTGTGACCAAACTAAAGATTGTTCCTGTGCCCTCAAAT : GCAACTTCACAGTTCAAGGAAAATGTAAAATCAAATTGTGATTTCTACTATGACATGAAGTACTTGCTTCCATACTCTTCCTTC</gDNA_template>
            <first_frame> L  I  L  P  P  L  Y  T  L  H  V  R  R  R  R  C  D  L  L  L  H  L  F  R  Y  P  N  A  K  Q  T  E  I  F  S  G  Y  K  A  R  V  F  I  R  Q  *  E  V  E  E  T  C  S  *  K  T  R  S  S  S  S  S  T  I  *  F  R  F  *  T  G  T  C  F  I  I  K  E  E  I  H  E  :  A  S  C  S  K  G  G  T  F  G  G  F  C  S  W  E  *  F  C  G  R  G  R  S  R  W  N  G  A  R  E  S  E  E  E  L  V  D  F  T  F  Q  K  E  A  *  E  G  *  E  S  *  R  *  R  V  C  T  C  R  *  P  C  S  G  C  R  S  *  T  E  V  A  S  S  L   : *  *  R  E  R  K  W  Y  Q  E  L  K  W  :  S  R  *  S  G  P  V  N  S  S  *  V  P  F  *  S  S  R  C  *  W  S  D  I  L  S  R  G  *  C  T  C  E   : G  C  *  W  *  G  R  L  H  L  Q  D  C  *  I  L  *  S  S  *  R  S  A  V  F  Y  S  S  V  V  L  Q  S  *  G  Y   : C  Y  *  K  P  *  S  V  H  *  Q  K  T  C  I  P  F  *  N  Q  G  *  Q  S  S  *  L  P  C  D  Q  T  K  D  C  S  C  A  L  K   : C  N  F  T  V  Q  G  K  C  K  I  K  L  *  F  L  L  *  H  E  V  L  A  S  I  L  F  L  </first_frame>
            <second_frame>  S  S  S  R  H  C  T  H  C  T  F  A  A  A  A  A  T  Y  Y  F  I  F  S  D  I  P  M  P  S  K  R  K  S  S  P  A  T  K  P  E  S  S  S  G  S  R  K  S  K  R  L  V  V  E  R  P  D  P  V  V  A  Q  P  S  D  S  D  F  E  P  E  P  V  L  S  S  K  K  K  S  T  R :   R  A  A  V  K  V  E  P  L  V  D  S  V  A  G  S  D  F  V  E  E  E  E  V  D  G  M  E  L  G  S  L  K  K  S  L  S  I  S  P  S  K  R  K  P  K  R  A  E  K  V  K  D  E  E  C  V  L  A  G  D  P  V  P  D  A  E  A  R  L  K  W  P  H  R  Y  :  N  K  G  K  E  N  G  T  K  S  L  N  G :   Q  D  D  P  D  Q  L  I  Q  A  K  C  H  F  S  R  A  D  V  D  G  Q  I  Y  Y  L  E  D  D  A  H  V  K  :  A  A  D  G  E  D  D  Y  I  C  K  I  V  E  F  F  E  A  V  D  G  V  Q  Y  F  T  A  Q  W  F  Y  R  A  K  D  T  :  V  I  K  S  H  D  Q  F  I  D  K  K  R  V  F  L  S  E  I  K  D  D  N  P  L  D  C  L  V  T  K  L  K  I  V  P  V  P  S  N  :  A  T  S  Q  F  K  E  N  V  K  S  N  C  D  F  Y  Y  D  M  K  Y  L  L  P  Y  S  S  F </second_frame>
            <third_frame>   H  P  P  A  T  V  H  T  A  R  S  P  P  P  L  R  P  T  T  S  S  F  Q  I  S  Q  C  Q  A  N  G  N  L  L  R  L  Q  S  Q  S  L  H  P  A  V  G  S  R  R  D  L  *  L  K  D  Q  I  Q  *  *  L  N  H  L  I  P  I  L  N  R  N  L  F  Y  H  Q  R  R  N  P  R   : G  E  L  Q  *  R  W  N  L  W  W  I  L  *  L  G  V  I  L  W  K  R  K  K  *  M  E  W  S  *  G  V  *  R  R  A  C  R  F  H  L  P  K  G  S  L  R  G  L  R  K  L  K  M  K  S  V  Y  L  P  V  T  L  F  R  M  Q  K  L  D  *  S  G  L  I  A  I :   I  K  G  K  K  M  V  P  R  A  *  M   : V  K  M  I  R  T  S  *  F  K  L  S  A  I  L  V  E  Q  M  L  M  V  R  Y  I  I  S  R  M  M  H  M  *  R :   L  L  M  V  R  T  I  T  F  A  R  L  L  N  S  L  K  Q  L  T  E  C  S  I  L  Q  L  S  G  F  T  E  L  R  I  L :   L  L  K  A  M  I  S  S  L  T  K  N  V  Y  S  F  L  K  S  R  M  T  I  L  L  I  A  L  *  P  N  *  R  L  F  L  C  P  Q  M :   Q  L  H  S  S  R  K  M  *  N  Q  I  V  I  S  T  M  T  *  S  T  C  F  H  T  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52129" stop="52373"/>
                    <exon start="52539" stop="52767"/>
                    <exon start="53039" stop="53076"/>
                    <exon start="53170" stop="53269"/>
                    <exon start="54526" stop="54633"/>
                    <exon start="54717" stop="54836"/>
                    <exon start="54917" stop="55000"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSRHCTHCTFAAAAATYYFIFSDIPMPSKRKSSPATKPESSSGSRKSKRLVVERPDPVVAQPSDSDFEPEPVLSSKKKSTRRAAVKVEPLVDSVAGSDFVEEEEVDGMELGSLKKSLSISPSKRKPKRAEKVKDEECVLAGDPVPDAEARLKWPHRYNKGKENGTKSLNGQDDPDQLIQAKCHFSRADVDGQIYYLEDDAHVKAADGEDDYICKIVEFFEAVDGVQYFTAQWFYRAKDTVIKSHDQFIDKKRVFLSEIKDDNPLDCLVTKLKIVPVPSNATSQFKENVKSNCDFYYDMKYLLPYSSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="50977" PGL_stop="49009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50977" e_stop="50952"/>
            <exon e_start="49465" e_stop="49097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50977" e_stop="50952" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.956">
            <gDNA_intron_boundary i_start="50951" i_stop="49466" i_length="1486"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49465" e_stop="49097" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50977" stop="50952"/>
              <exon start="49465" stop="49097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312010" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTCTTTCTCTCTATCAATTTGTAG : ATGCATTTACTGGTGATGATATCAATTCAGCCTTGAGAAAACTACTTTGAGTATCCTGATATTGGTTTCGTCTCTTCAGGACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCA</gDNA_template>
            <first_frame> N  S  F  S  L  S  I  C  R :   C  I  Y  W  *  *  Y  Q  F  S  L  E  K  T  T  L  S  I  L  I  L  V  S  S  L  Q  D  P  K  L  *  T  N  K  T  A  Y  M  T  A  P  E  R  P  Q  P  E  V  P  S  I  D  L  R  E  Y  S  A  S  *  Q  H  Q  D  D  H  N  Q  K  C  H  Q  S  T  S  R  S  T  L  H  Q  R  L  *  F  L  L  T  D  Q  S  L  F  F  E  V  P  S  R  L  A  H  K  K  K  Q  L  G  N  S  S  S  H  L  K  T  L  S  P  G  P  L   </first_frame>
            <second_frame>  T  L  S  L  Y  Q  F  V   : D  A  F  T  G  D  D  I  N  S  A  L  R  K  L  L  *  V  S  *  Y  W  F  R  L  F  R  T  Q  N  C  E  Q  T  K  L  P  I  *  Q  H  Q  N  D  R  N  Q  K  C  H  Q  S  T  S  G  S  T  L  H  H  D  S  T  R  T  T  T  T  R  S  A  I  N  R  P  R  G  V  L  C  I  K  D  S  D  S  F  *  P  T  S  P  S  S  S  R  S  H  Q  G  W  P  T  R  R  N  S  W  A  I  H  P  R  I  *  R  P  Y  L  L  G  L  C  </second_frame>
            <third_frame>   L  F  L  S  I  N  L  *  :  M  H  L  L  V  M  I  S  I  Q  P  *  E  N  Y  F  E  Y  P  D  I  G  F  V  S  S  G  P  K  I  V  N  K  Q  N  C  L  Y  D  S  T  R  T  T  A  T  R  S  A  I  N  R  P  Q  G  V  L  C  I  M  T  A  P  G  R  P  Q  P  E  V  P  S  I  D  L  E  E  Y  S  A  S  K  T  L  I  P  F  D  R  P  V  P  L  L  R  G  P  I  K  A  G  P  Q  E  E  T  V  G  Q  F  I  L  A  F  K  D  P  I  S  W  A  S  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49429" stop="49097"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENYFEYPDIGFVSSGPKIVNKQNCLYDSTRTTATRSAINRPQGVLCIMTAPGRPQPEVPSIDLEEYSASKTLIPFDRPVPLLRGPIKAGPQEETVGQFILAFKDPISWASA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49604" e_stop="49604"/>
            <exon e_start="49465" e_stop="49454"/>
            <exon e_start="49386" e_stop="49009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.507" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.808" acc_prob="0.942" e_score="0.583"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49604" e_stop="49604" e_length="1"/>
          </exon>
          <intron i_serial="1" don_prob="0.507" acc_prob="0.956">
            <gDNA_intron_boundary i_start="49603" i_stop="49466" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="0.583">
            <gDNA_exon_boundary e_start="49465" e_stop="49454" e_length="12"/>
          </exon>
          <intron i_serial="2" don_prob="0.808" acc_prob="0.942">
            <gDNA_intron_boundary i_start="49453" i_stop="49387" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49386" e_stop="49009" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49604" stop="49604"/>
              <exon start="49465" stop="49454"/>
              <exon start="49386" stop="49009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339813" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>T : ATGCATTTACTG : GACCCAAAATTGTGAACAAACAAAACTGCCTATATGACAGCACCAGAACGACCGCAACCAGAAGTGCCATCAATCGACCTCAGGGAGTACTCTGCATCATGACAGCACCAGGACGACCACAACCAGAAGTGCCATCAATCGACCTCGAGGAGTACTCTGCATCAAAGACTCTGATTCCTTTTGACCGACCAGTCCCTCTTCTTCGAGGTCCCATCAAGGCTGGCCCACAAGAAGAAACAGTTGGGCAATTCATCCTCGCATTTAAAGACCCTATCTCCTGGGCCTCTGCATACAAGGCTTGTGAATCTCAAGTCACTCAACAATGTGAATCTGGAGCTAGGATTGGTTGCTCTATCGCAGCCTCAGACAAATGTAAAA</gDNA_template>
            <first_frame>  : Y  A  F  T   : G  P  K  I  V  N  K  Q  N  C  L  Y  D  S  T  R  T  T  A  T  R  S  A  I  N  R  P  Q  G  V  L  C  I  M  T  A  P  G  R  P  Q  P  E  V  P  S  I  D  L  E  E  Y  S  A  S  K  T  L  I  P  F  D  R  P  V  P  L  L  R  G  P  I  K  A  G  P  Q  E  E  T  V  G  Q  F  I  L  A  F  K  D  P  I  S  W  A  S  A  Y  K  A  C  E  S  Q  V  T  Q  Q  C  E  S  G  A  R  I  G  C  S  I  A  A  S  D  K  C  K  </first_frame>
            <second_frame>  :  M  H  L  L  :  D  P  K  L  *  T  N  K  T  A  Y  M  T  A  P  E  R  P  Q  P  E  V  P  S  I  D  L  R  E  Y  S  A  S  *  Q  H  Q  D  D  H  N  Q  K  C  H  Q  S  T  S  R  S  T  L  H  Q  R  L  *  F  L  L  T  D  Q  S  L  F  F  E  V  P  S  R  L  A  H  K  K  K  Q  L  G  N  S  S  S  H  L  K  T  L  S  P  G  P  L  H  T  R  L  V  N  L  K  S  L  N  N  V  N  L  E  L  G  L  V  A  L  S  Q  P  Q  T  N  V  K </second_frame>
            <third_frame>  :   C  I  Y  W :   T  Q  N  C  E  Q  T  K  L  P  I  *  Q  H  Q  N  D  R  N  Q  K  C  H  Q  S  T  S  G  S  T  L  H  H  D  S  T  R  T  T  T  T  R  S  A  I  N  R  P  R  G  V  L  C  I  K  D  S  D  S  F  *  P  T  S  P  S  S  S  R  S  H  Q  G  W  P  T  R  R  N  S  W  A  I  H  P  R  I  *  R  P  Y  L  L  G  L  C  I  Q  G  L  *  I  S  S  H  S  T  M  *  I  W  S  *  D  W  L  L  Y  R  S  L  R  Q  M  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49604" stop="49454"/>
                    <exon start="49386" stop="49010"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YAFTGPKIVNKQNCLYDSTRTTATRSAINRPQGVLCIMTAPGRPQPEVPSIDLEEYSASKTLIPFDRPVPLLRGPIKAGPQEETVGQFILAFKDPISWASAYKACESQVTQQCESGARIGCSIAASDKCK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="62622" PGL_stop="61752"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62622" e_stop="62550"/>
            <exon e_start="62479" e_stop="62225"/>
            <exon e_start="62149" e_stop="61752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.926"/>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="0.898"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="62622" e_stop="62550" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62549" i_stop="62480" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="0.898">
            <gDNA_exon_boundary e_start="62479" e_stop="62225" e_length="255"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="62224" i_stop="62150" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.910">
            <gDNA_exon_boundary e_start="62149" e_stop="61752" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62622" stop="62550"/>
              <exon start="62479" stop="62225"/>
              <exon start="62149" stop="61752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62617" stop="62550"/>
              <exon start="62479" stop="62225"/>
              <exon start="62149" stop="61752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTTGAGCGTACAGTATATTACAGAGAAAGAGCTGCTGGAATGTATTCTGCCATCCCTTACGCCTTTGGACAA : ACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTTCTTATGGTGTTATCGTCTATGCTATGATTGGATTTGAATGGACTGTGACCAAGTTCTTTTGGTACTTGTTTATAATGTTCTTCACTCTCTTGTACTTCACCTTCTATGGAATGATGAGTGTTGCCATTACCCCAAATCAACATGTCGCGCAAATTGTCTCTGTCTCCGGATATGGAATGTGGAATCTTTTCTCAGGATTCATTGTTCCACGACCT : AGCATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGCATCACAATTCGGAGACCTCCAAAACAAAATTACTGATAGTGATGAGACAGCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTGTTGGAGTAGCTGCAGTGGTGACTGTTGCATATACTCTTGTTTTTGCCTTCACATTTGCTTTGGCTATTAAGGTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAACATCTTCATGAGGAAAATTCAAGAAATGCTTATAGAACTAATGTATTCAGGTTACCACTTGAAGATGTATATATATGATCTGTTTGTTTTGTATCACATTACTCTGCAATGAACTGATT</gDNA_template>
            <first_frame> R  *  A  Y  S  I  L  Q  R  K  S  C  W  N  V  F  C  H  P  L  R  L  W  T   : N  F  H  *  N  T  I  C  L  C  A  S  C  F  L  W  C  Y  R  L  C  Y  D  W  I  *  M  D  C  D  Q  V  L  L  V  L  V  Y  N  V  L  H  S  L  V  L  H  L  L  W  N  D  E  C  C  H  Y  P  K  S  T  C  R  A  N  C  L  C  L  R  I  W  N  V  E  S  F  L  R  I  H  C  S  T  T   : *  H  A  H  M  V  E  M  V  L  L  G  *  S  C  C  L  D  I  V  W  F  G  C  I  T  I  R  R  P  P  K  Q  N  Y  *  *  *  *  D  S  Q  T  I  L  E  A  L  L  W  V  Q  A  *  F  C  W  S  S  C  S  G  D  C  C  I  Y  S  C  F  C  L  H  I  C  F  G  Y  *  G  F  Q  L  P  E  K  I  E  E  L  T  C  *  T  S  S  *  G  K  F  K  K  C  L  *  N  *  C  I  Q  V  T  T  *  R  C  I  Y  M  I  C  L  F  C  I  T  L  L  C  N  E  L  I </first_frame>
            <second_frame>  V  E  R  T  V  Y  Y  R  E  R  A  A  G  M  Y  S  A  I  P  Y  A  F  G  Q  :  T  F  I  E  I  P  Y  V  F  V  Q  A  V  S  Y  G  V  I  V  Y  A  M  I  G  F  E  W  T  V  T  K  F  F  W  Y  L  F  I  M  F  F  T  L  L  Y  F  T  F  Y  G  M  M  S  V  A  I  T  P  N  Q  H  V  A  Q  I  V  S  V  S  G  Y  G  M  W  N  L  F  S  G  F  I  V  P  R  P  :  S  M  P  I  W  W  R  W  Y  Y  W  A  D  P  V  A  W  T  L  Y  G  L  V  A  S  Q  F  G  D  L  Q  N  K  I  T  D  S  D  E  T  A  K  Q  F  L  R  R  Y  F  G  F  K  H  D  F  V  G  V  A  A  V  V  T  V  A  Y  T  L  V  F  A  F  T  F  A  L  A  I  K  V  F  N  F  Q  K  R  *  K  S  L  P  A  E  H  L  H  E  E  N  S  R  N  A  Y  R  T  N  V  F  R  L  P  L  E  D  V  Y  I  *  S  V  C  F  V  S  H  Y  S  A  M  N  *   </second_frame>
            <third_frame>   L  S  V  Q  Y  I  T  E  K  E  L  L  E  C  I  L  P  S  L  T  P  L  D  K :   L  S  L  K  Y  H  M  S  L  C  K  L  F  L  M  V  L  S  S  M  L  *  L  D  L  N  G  L  *  P  S  S  F  G  T  C  L  *  C  S  S  L  S  C  T  S  P  S  M  E  *  *  V  L  P  L  P  Q  I  N  M  S  R  K  L  S  L  S  P  D  M  E  C  G  I  F  S  Q  D  S  L  F  H  D  L :   A  C  P  Y  G  G  D  G  T  I  G  L  I  L  L  P  G  H  C  M  V  W  L  H  H  N  S  E  T  S  K  T  K  L  L  I  V  M  R  Q  P  N  N  S  *  G  V  T  L  G  S  S  M  I  L  L  E  *  L  Q  W  *  L  L  H  I  L  L  F  L  P  S  H  L  L  W  L  L  R  F  S  T  S  R  K  D  R  R  A  Y  L  L  N  I  F  M  R  K  I  Q  E  M  L  I  E  L  M  Y  S  G  Y  H  L  K  M  Y  I  Y  D  L  F  V  L  Y  H  I  T  L  Q  *  T  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62621" stop="62550"/>
                    <exon start="62479" stop="62225"/>
                    <exon start="62149" stop="61889"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VERTVYYRERAAGMYSAIPYAFGQTFIEIPYVFVQAVSYGVIVYAMIGFEWTVTKFFWYLFIMFFTLLYFTFYGMMSVAITPNQHVAQIVSVSGYGMWNLFSGFIVPRPSMPIWWRWYYWADPVAWTLYGLVASQFGDLQNKITDSDETAKQFLRRYFGFKHDFVGVAAVVTVAYTLVFAFTFALAIKVFNFQKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="66108" PGL_stop="67009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66108" e_stop="66180"/>
            <exon e_start="66251" e_stop="66505"/>
            <exon e_start="66599" e_stop="67009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.379" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.978" e_score="0.988"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66108" e_stop="66180" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.379">
            <gDNA_intron_boundary i_start="66181" i_stop="66250" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="66251" e_stop="66505" e_length="255"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.978">
            <gDNA_intron_boundary i_start="66506" i_stop="66598" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="66599" e_stop="67009" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66108" stop="66180"/>
              <exon start="66251" stop="66505"/>
              <exon start="66599" stop="67009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66113" stop="66180"/>
              <exon start="66251" stop="66505"/>
              <exon start="66599" stop="66994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66815" stop="67009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66816" stop="67004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66816" stop="66994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697044" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTGAGCGTACAGTATTTTACAGAGAAAGAGCTGCTGGAATGTATTCTTCCCTCCCCTATGCCTTTGGACAA : ACTTTCATTGAAATACCATATGTCTTTGTGCAAGCTGTTACCTATGCTGTTATCATCTATGCTATGATCGGATTTGAATGGACAGTGAGCAAATTCTTTTGGTACTTGTTTATCATGTATTTCACTTTCTTGTATTTCACCTTCTATGGTATGATGAGTGTTGCCGTTTCCCCAAATCAAAATATTGCGCAAATTGTCTCTCTCTTCGGCTATTCAATGTGGAATCTTTTCTCAGGATTCATGATTCCGCGACCT : AGTATGCCCATATGGTGGAGATGGTACTATTGGGCTGATCCTGTTGCCTGGACATTGTATGGTTTGGTTGTATCGCAATTCGGAGACCTCCAAGATAAAATTACTGATATAGATGAGACATCCAAACAATTCTTGAGGCGTTACTTTGGGTTCAAGCATGATTTTCTTGGAGTAGTTGCAGCTGTGACTGTTGCATATGCTGTTGTTTTTGCCTTCACATTTGGTTTGGCCATTAAGTTTTTCAACTTCCAGAAAAGATAGAAGAGCTTACCTGCTGAAGATGGAACATTCATGAAATGGTTATAAAACTAGTGTATTCAGGTTACCACTTGAACAAGTATATATATGTTCTGTTTGTTTTGTATCGCACTACTATGCAGTGAAATGATTTTGTAAGTTTGAATCGATTGT</gDNA_template>
            <first_frame> C  *  A  Y  S  I  L  Q  R  K  S  C  W  N  V  F  F  P  P  L  C  L  W  T   : N  F  H  *  N  T  I  C  L  C  A  S  C  Y  L  C  C  Y  H  L  C  Y  D  R  I  *  M  D  S  E  Q  I  L  L  V  L  V  Y  H  V  F  H  F  L  V  F  H  L  L  W  Y  D  E  C  C  R  F  P  K  S  K  Y  C  A  N  C  L  S  L  R  L  F  N  V  E  S  F  L  R  I  H  D  S  A  T   : *  Y  A  H  M  V  E  M  V  L  L  G  *  S  C  C  L  D  I  V  W  F  G  C  I  A  I  R  R  P  P  R  *  N  Y  *  Y  R  *  D  I  Q  T  I  L  E  A  L  L  W  V  Q  A  *  F  S  W  S  S  C  S  C  D  C  C  I  C  C  C  F  C  L  H  I  W  F  G  H  *  V  F  Q  L  P  E  K  I  E  E  L  T  C  *  R  W  N  I  H  E  M  V  I  K  L  V  Y  S  G  Y  H  L  N  K  Y  I  Y  V  L  F  V  L  Y  R  T  T  M  Q  *  N  D  F  V  S  L  N  R  L  </first_frame>
            <second_frame>  V  E  R  T  V  F  Y  R  E  R  A  A  G  M  Y  S  S  L  P  Y  A  F  G  Q  :  T  F  I  E  I  P  Y  V  F  V  Q  A  V  T  Y  A  V  I  I  Y  A  M  I  G  F  E  W  T  V  S  K  F  F  W  Y  L  F  I  M  Y  F  T  F  L  Y  F  T  F  Y  G  M  M  S  V  A  V  S  P  N  Q  N  I  A  Q  I  V  S  L  F  G  Y  S  M  W  N  L  F  S  G  F  M  I  P  R  P  :  S  M  P  I  W  W  R  W  Y  Y  W  A  D  P  V  A  W  T  L  Y  G  L  V  V  S  Q  F  G  D  L  Q  D  K  I  T  D  I  D  E  T  S  K  Q  F  L  R  R  Y  F  G  F  K  H  D  F  L  G  V  V  A  A  V  T  V  A  Y  A  V  V  F  A  F  T  F  G  L  A  I  K  F  F  N  F  Q  K  R  *  K  S  L  P  A  E  D  G  T  F  M  K  W  L  *  N  *  C  I  Q  V  T  T  *  T  S  I  Y  M  F  C  L  F  C  I  A  L  L  C  S  E  M  I  L  *  V  *  I  D  C </second_frame>
            <third_frame>   L  S  V  Q  Y  F  T  E  K  E  L  L  E  C  I  L  P  S  P  M  P  L  D  K :   L  S  L  K  Y  H  M  S  L  C  K  L  L  P  M  L  L  S  S  M  L  *  S  D  L  N  G  Q  *  A  N  S  F  G  T  C  L  S  C  I  S  L  S  C  I  S  P  S  M  V  *  *  V  L  P  F  P  Q  I  K  I  L  R  K  L  S  L  S  S  A  I  Q  C  G  I  F  S  Q  D  S  *  F  R  D  L :   V  C  P  Y  G  G  D  G  T  I  G  L  I  L  L  P  G  H  C  M  V  W  L  Y  R  N  S  E  T  S  K  I  K  L  L  I  *  M  R  H  P  N  N  S  *  G  V  T  L  G  S  S  M  I  F  L  E  *  L  Q  L  *  L  L  H  M  L  L  F  L  P  S  H  L  V  W  P  L  S  F  S  T  S  R  K  D  R  R  A  Y  L  L  K  M  E  H  S  *  N  G  Y  K  T  S  V  F  R  L  P  L  E  Q  V  Y  I  C  S  V  C  F  V  S  H  Y  Y  A  V  K  *  F  C  K  F  E  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66109" stop="66180"/>
                    <exon start="66251" stop="66505"/>
                    <exon start="66599" stop="66859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VERTVFYRERAAGMYSSLPYAFGQTFIEIPYVFVQAVTYAVIIYAMIGFEWTVSKFFWYLFIMYFTFLYFTFYGMMSVAVSPNQNIAQIVSLFGYSMWNLFSGFMIPRPSMPIWWRWYYWADPVAWTLYGLVVSQFGDLQDKITDIDETSKQFLRRYFGFKHDFLGVVAAVTVAYAVVFAFTFGLAIKFFNFQKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="76613" PGL_stop="74530"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76613" e_stop="76527"/>
            <exon e_start="76434" e_stop="76347"/>
            <exon e_start="76163" e_stop="76075"/>
            <exon e_start="75987" e_stop="75883"/>
            <exon e_start="75809" e_stop="75766"/>
            <exon e_start="75660" e_stop="75591"/>
            <exon e_start="75497" e_stop="75394"/>
            <exon e_start="74968" e_stop="74530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.826" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.779" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76613" e_stop="76527" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76526" i_stop="76435" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76434" e_stop="76347" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.826" acc_prob="0.880">
            <gDNA_intron_boundary i_start="76346" i_stop="76164" i_length="183"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76163" e_stop="76075" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76074" i_stop="75988" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75987" e_stop="75883" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.779" acc_prob="0.985">
            <gDNA_intron_boundary i_start="75882" i_stop="75810" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75809" e_stop="75766" e_length="44"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="75765" i_stop="75661" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75660" e_stop="75591" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75590" i_stop="75498" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75497" e_stop="75394" e_length="104"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75393" i_stop="74969" i_length="425"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="74968" e_stop="74530" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76613" stop="76527"/>
              <exon start="76434" stop="76347"/>
              <exon start="76163" stop="76075"/>
              <exon start="75987" stop="75883"/>
              <exon start="75809" stop="75766"/>
              <exon start="75660" stop="75591"/>
              <exon start="75497" stop="75394"/>
              <exon start="74968" stop="74933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76409" stop="76347"/>
              <exon start="76163" stop="76075"/>
              <exon start="75987" stop="75883"/>
              <exon start="75809" stop="75766"/>
              <exon start="75660" stop="75591"/>
              <exon start="75497" stop="75452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76127" stop="76075"/>
              <exon start="75987" stop="75883"/>
              <exon start="75809" stop="75766"/>
              <exon start="75660" stop="75591"/>
              <exon start="75497" stop="75394"/>
              <exon start="74968" stop="74742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76113" stop="76075"/>
              <exon start="75987" stop="75883"/>
              <exon start="75809" stop="75766"/>
              <exon start="75660" stop="75591"/>
              <exon start="75497" stop="75394"/>
              <exon start="74968" stop="74676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75945" stop="75883"/>
              <exon start="75809" stop="75766"/>
              <exon start="75660" stop="75591"/>
              <exon start="75497" stop="75394"/>
              <exon start="74968" stop="74885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75464" stop="75394"/>
              <exon start="74968" stop="74585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74935" stop="74530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74917" stop="74530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAACACAGTTGCGTATGATTCAGTCAGGGATCTCGAGTTAAAGAAAGAACTCTTTCTTGGTGATGCACTTTCTGATCTCCCTTTG : GTGGAGAACAATGAGCCAAGAGATGAAATGCCTTACACTGATGAGCCTAAATCTGATTTCCAGCATTTTATAAGAATGGGGAGGGATG : GGTTGTTGGGAAGCGTACTATATGATCATCGTCCTCTTCAGTTGAACGAAGATGATCATCAGCGTGTATGTCAAATTCCAAAGCGGAAG : GGTGCAAACTTCAGGGACTTGCCCGGAGTTCGTGTTCGGCCAGATAATAAAGTTGAATGGGACCCAGACGTGGAGAGAGTAAAGCTACCTTCTGGGAAGCCTTTG : GTCCCTGACTATGCGATGAGCTTCGTTGGTGGTAGTTCCTCAAA : ACCATTTGGTCGTTTGTGGTGGGATGAAACTGTCCCAACAGTTGTGACGAGAGCTGAACCCCATAATCAG : ACCATAGTACATCCACTACAAGATAGAGTGCTCACAATTCGTGAAAATGCAAGGCTCCAAGGTTTTCCTGACTACTACAAGTTGATAGGTCCAATAAAAGAAAG : GTACATGCAAGTAGGTAATGCAGTTGCAGTTCCAGTTGCCCGAGCATTGGGCTATTCTTTGGCCATGTCAATAAAGGGATTATCTGGAGAAACACCATTGTTCACCTTGCCAAAAAATTTCCCTTCTCATGAGGATCAGAATTGTAATGAAGTGTCACAATAATTTAAACATTAACTAATTGAGATTACCAAACTATCTTTCACCCTCTGTATGGGGGATGATTATTTTTAGGATCTTAGTTTTATTGATTAATTTGCCTTCAGACATTGTTTCACAATACAATCATGCCAATGTTGAAGCTGGTGAAGGCGTGGGTTTATGTAATAGCAAGGTGAACATGTGTCATGTTCTATTCTAGTTCCCAGAAAATGTATTTTGAGCATTCAATTCCATGTAACATTTCAAGTTGTAAACTGTGAGAAAACATTTAGACACATT</gDNA_template>
            <first_frame> S  N  T  V  A  Y  D  S  V  R  D  L  E  L  K  K  E  L  F  L  G  D  A  L  S  D  L  P  L  :  V  E  N  N  E  P  R  D  E  M  P  Y  T  D  E  P  K  S  D  F  Q  H  F  I  R  M  G  R  D   : G  L  L  G  S  V  L  Y  D  H  R  P  L  Q  L  N  E  D  D  H  Q  R  V  C  Q  I  P  K  R  K  :  G  A  N  F  R  D  L  P  G  V  R  V  R  P  D  N  K  V  E  W  D  P  D  V  E  R  V  K  L  P  S  G  K  P  L  :  V  P  D  Y  A  M  S  F  V  G  G  S  S  S  K :   P  F  G  R  L  W  W  D  E  T  V  P  T  V  V  T  R  A  E  P  H  N  Q  :  T  I  V  H  P  L  Q  D  R  V  L  T  I  R  E  N  A  R  L  Q  G  F  P  D  Y  Y  K  L  I  G  P  I  K  E  R :   Y  M  Q  V  G  N  A  V  A  V  P  V  A  R  A  L  G  Y  S  L  A  M  S  I  K  G  L  S  G  E  T  P  L  F  T  L  P  K  N  F  P  S  H  E  D  Q  N  C  N  E  V  S  Q  *  F  K  H  *  L  I  E  I  T  K  L  S  F  T  L  C  M  G  D  D  Y  F  *  D  L  S  F  I  D  *  F  A  F  R  H  C  F  T  I  Q  S  C  Q  C  *  S  W  *  R  R  G  F  M  *  *  Q  G  E  H  V  S  C  S  I  L  V  P  R  K  C  I  L  S  I  Q  F  H  V  T  F  Q  V  V  N  C  E  K  T  F  R  H  I </first_frame>
            <second_frame>  Q  T  Q  L  R  M  I  Q  S  G  I  S  S  *  R  K  N  S  F  L  V  M  H  F  L  I  S  L  W :   W  R  T  M  S  Q  E  M  K  C  L  T  L  M  S  L  N  L  I  S  S  I  L  *  E  W  G  G  M  :  G  C  W  E  A  Y  Y  M  I  I  V  L  F  S  *  T  K  M  I  I  S  V  Y  V  K  F  Q  S  G  R :   V  Q  T  S  G  T  C  P  E  F  V  F  G  Q  I  I  K  L  N  G  T  Q  T  W  R  E  *  S  Y  L  L  G  S  L  W :   S  L  T  M  R  *  A  S  L  V  V  V  P  Q   : N  H  L  V  V  C  G  G  M  K  L  S  Q  Q  L  *  R  E  L  N  P  I  I  R :   P  *  Y  I  H  Y  K  I  E  C  S  Q  F  V  K  M  Q  G  S  K  V  F  L  T  T  T  S  *  *  V  Q  *  K  K   : G  T  C  K  *  V  M  Q  L  Q  F  Q  L  P  E  H  W  A  I  L  W  P  C  Q  *  R  D  Y  L  E  K  H  H  C  S  P  C  Q  K  I  S  L  L  M  R  I  R  I  V  M  K  C  H  N  N  L  N  I  N  *  L  R  L  P  N  Y  L  S  P  S  V  W  G  M  I  I  F  R  I  L  V  L  L  I  N  L  P  S  D  I  V  S  Q  Y  N  H  A  N  V  E  A  G  E  G  V  G  L  C  N  S  K  V  N  M  C  H  V  L  F  *  F  P  E  N  V  F  *  A  F  N  S  M  *  H  F  K  L  *  T  V  R  K  H  L  D  T   </second_frame>
            <third_frame>   K  H  S  C  V  *  F  S  Q  G  S  R  V  K  E  R  T  L  S  W  *  C  T  F  *  S  P  F   : G  G  E  Q  *  A  K  R  *  N  A  L  H  *  *  A  *  I  *  F  P  A  F  Y  K  N  G  E  G  W :   V  V  G  K  R  T  I  *  S  S  S  S  S  V  E  R  R  *  S  S  A  C  M  S  N  S  K  A  E   : G  C  K  L  Q  G  L  A  R  S  S  C  S  A  R  *  *  S  *  M  G  P  R  R  G  E  S  K  A  T  F  W  E  A  F   : G  P  *  L  C  D  E  L  R  W  W  *  F  L  K  :  T  I  W  S  F  V  V  G  *  N  C  P  N  S  C  D  E  S  *  T  P  *  S   : D  H  S  T  S  T  T  R  *  S  A  H  N  S  *  K  C  K  A  P  R  F  S  *  L  L  Q  V  D  R  S  N  K  R  K  :  V  H  A  S  R  *  C  S  C  S  S  S  C  P  S  I  G  L  F  F  G  H  V  N  K  G  I  I  W  R  N  T  I  V  H  L  A  K  K  F  P  F  S  *  G  S  E  L  *  *  S  V  T  I  I  *  T  L  T  N  *  D  Y  Q  T  I  F  H  P  L  Y  G  G  *  L  F  L  G  S  *  F  Y  *  L  I  C  L  Q  T  L  F  H  N  T  I  M  P  M  L  K  L  V  K  A  W  V  Y  V  I  A  R  *  T  C  V  M  F  Y  S  S  S  Q  K  M  Y  F  E  H  S  I  P  C  N  I  S  S  C  K  L  *  E  N  I  *  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76613" stop="76527"/>
                    <exon start="76434" stop="76347"/>
                    <exon start="76163" stop="76075"/>
                    <exon start="75987" stop="75883"/>
                    <exon start="75809" stop="75766"/>
                    <exon start="75660" stop="75591"/>
                    <exon start="75497" stop="75394"/>
                    <exon start="74968" stop="74806"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNTVAYDSVRDLELKKELFLGDALSDLPLVENNEPRDEMPYTDEPKSDFQHFIRMGRDGLLGSVLYDHRPLQLNEDDHQRVCQIPKRKGANFRDLPGVRVRPDNKVEWDPDVERVKLPSGKPLVPDYAMSFVGGSSSKPFGRLWWDETVPTVVTRAEPHNQTIVHPLQDRVLTIRENARLQGFPDYYKLIGPIKERYMQVGNAVAVPVARALGYSLAMSIKGLSGETPLFTLPKNFPSHEDQNCNEVSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="79122" PGL_stop="77724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79122" e_stop="79110"/>
            <exon e_start="79022" e_stop="77724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79122" e_stop="79110" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79109" i_stop="79023" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79022" e_stop="77724" e_length="1299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79122" stop="79110"/>
              <exon start="79022" stop="78393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79121" stop="79110"/>
              <exon start="79022" stop="78314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79118" stop="79110"/>
              <exon start="79022" stop="78650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78913" stop="78180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78913" stop="78244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78554" stop="77948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78554" stop="78058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78463" stop="77748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78432" stop="77748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78282" stop="77724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAACTTTGAG : ATTTAGGATATAGCAAAAGCAAAAATGGGAGGTGGTGGTAATTCTATGAGTAATCCAACAACTAAAAATCGAGTTCCAAGTTCAAAGCCCCCTTTTACGATTGGTGATATCAAGAAGGCTATCCCTCCTCATTGCTTTCAACGCTCTCTCGTTCGCTCCTCTTCCTATCTTATTTACGATCTCATACTTGTCTTCATCTTCTATTACATCGCCTCTACTTATTTCCACGTCCTTCCAAAACCGTATTATCCATACCTAGCATGGCCTATTTATTGGATCGTTCAAGGATGTGTTTGCACCGCACTATGGGTCATTGCCCATGAATGTGGCCACCAATCCTTTAGTGATTACCAATGGATAAATGACACTATCGGTTTTATCCTCCACTCTGCACTTTTAACACCATACTTCTCATGGAAATATAGTCATCGTCGTCATCACTCCAATACTAATTCCCTTGAGCATGATGAAAATCATGTGCCCAAACTTGAAGTCAAACTAAAATGGTACACTAAATTATACGTGAATAATCCACTTGGACGATTATTATTAATTGTCTTCACACTCACTGCTGGCTTACCTTTATACTATGCCATCAATATAGCCGGTAGACCTTATGATCGTTTTGCAAGTCATTATGATCCATATAGCCCTATCTACAATGACCGTGAGAGACTACAAATTTACATCTCAGATGCAGGTGTGATTGCAACTATTTATTTATTATATCGCGTTGCTCTAACACAAGGCCTAACTTGGGTTATATGCATCTATGGAGTACCCCTTGTAATTGTGAATGGGTTCATAGTGTTAATAACTTTACTGCATCACACTCATGCTTCATTGCCACATTATGATTCATCAGAGTGGAGTTGGCTAAAAGGAGCTCTAGCTACGGTAGATAGAGACTATGGTGTCCTAAATAAGGTGTTTCATCATATCGTAGATACACACGTTCTACATCATCTATTTTCAAGTATACCACATTATCATGCTGTCGAGGCAACCAAGGCCATCAAGCCGTTACTAGGAGAATACTACCAATTTGATGGAACTCCATTTTACAAAGCAATATGGAGGGATTTTAATGAGTGTCAATATGTGGAGAAAGATGAAGCATCTCAACATCAGGGTATTTTCTGGTATACAAATTACAACACATAATATTCATTAATAACAACTGGCTTACGAATGTGTTAGCCAATGCATGAGTTGTTGTTGTTATTTGTATTTTGGATGGTGTGTTATCATAATAATAATAATATTGTTACTTTAATTTTATTGTACAAACATTGTTAA</gDNA_template>
            <first_frame> F  E  L  *   : D  L  G  Y  S  K  S  K  N  G  R  W  W  *  F  Y  E  *  S  N  N  *  K  S  S  S  K  F  K  A  P  F  Y  D  W  *  Y  Q  E  G  Y  P  S  S  L  L  S  T  L  S  R  S  L  L  F  L  S  Y  L  R  S  H  T  C  L  H  L  L  L  H  R  L  Y  L  F  P  R  P  S  K  T  V  L  S  I  P  S  M  A  Y  L  L  D  R  S  R  M  C  L  H  R  T  M  G  H  C  P  *  M  W  P  P  I  L  *  *  L  P  M  D  K  *  H  Y  R  F  Y  P  P  L  C  T  F  N  T  I  L  L  M  E  I  *  S  S  S  S  S  L  Q  Y  *  F  P  *  A  *  *  K  S  C  A  Q  T  *  S  Q  T  K  M  V  H  *  I  I  R  E  *  S  T  W  T  I  I  I  N  C  L  H  T  H  C  W  L  T  F  I  L  C  H  Q  Y  S  R  *  T  L  *  S  F  C  K  S  L  *  S  I  *  P  Y  L  Q  *  P  *  E  T  T  N  L  H  L  R  C  R  C  D  C  N  Y  L  F  I  I  S  R  C  S  N  T  R  P  N  L  G  Y  M  H  L  W  S  T  P  C  N  C  E  W  V  H  S  V  N  N  F  T  A  S  H  S  C  F  I  A  T  L  *  F  I  R  V  E  L  A  K  R  S  S  S  Y  G  R  *  R  L  W  C  P  K  *  G  V  S  S  Y  R  R  Y  T  R  S  T  S  S  I  F  K  Y  T  T  L  S  C  C  R  G  N  Q  G  H  Q  A  V  T  R  R  I  L  P  I  *  W  N  S  I  L  Q  S  N  M  E  G  F  *  *  V  S  I  C  G  E  R  *  S  I  S  T  S  G  Y  F  L  V  Y  K  L  Q  H  I  I  F  I  N  N  N  W  L  T  N  V  L  A  N  A  *  V  V  V  V  I  C  I  L  D  G  V  L  S  *  *  *  *  Y  C  Y  F  N  F  I  V  Q  T  L  L  </first_frame>
            <second_frame>  L  N  F  E  :  I  *  D  I  A  K  A  K  M  G  G  G  G  N  S  M  S  N  P  T  T  K  N  R  V  P  S  S  K  P  P  F  T  I  G  D  I  K  K  A  I  P  P  H  C  F  Q  R  S  L  V  R  S  S  S  Y  L  I  Y  D  L  I  L  V  F  I  F  Y  Y  I  A  S  T  Y  F  H  V  L  P  K  P  Y  Y  P  Y  L  A  W  P  I  Y  W  I  V  Q  G  C  V  C  T  A  L  W  V  I  A  H  E  C  G  H  Q  S  F  S  D  Y  Q  W  I  N  D  T  I  G  F  I  L  H  S  A  L  L  T  P  Y  F  S  W  K  Y  S  H  R  R  H  H  S  N  T  N  S  L  E  H  D  E  N  H  V  P  K  L  E  V  K  L  K  W  Y  T  K  L  Y  V  N  N  P  L  G  R  L  L  L  I  V  F  T  L  T  A  G  L  P  L  Y  Y  A  I  N  I  A  G  R  P  Y  D  R  F  A  S  H  Y  D  P  Y  S  P  I  Y  N  D  R  E  R  L  Q  I  Y  I  S  D  A  G  V  I  A  T  I  Y  L  L  Y  R  V  A  L  T  Q  G  L  T  W  V  I  C  I  Y  G  V  P  L  V  I  V  N  G  F  I  V  L  I  T  L  L  H  H  T  H  A  S  L  P  H  Y  D  S  S  E  W  S  W  L  K  G  A  L  A  T  V  D  R  D  Y  G  V  L  N  K  V  F  H  H  I  V  D  T  H  V  L  H  H  L  F  S  S  I  P  H  Y  H  A  V  E  A  T  K  A  I  K  P  L  L  G  E  Y  Y  Q  F  D  G  T  P  F  Y  K  A  I  W  R  D  F  N  E  C  Q  Y  V  E  K  D  E  A  S  Q  H  Q  G  I  F  W  Y  T  N  Y  N  T  *  Y  S  L  I  T  T  G  L  R  M  C  *  P  M  H  E  L  L  L  L  F  V  F  W  M  V  C  Y  H  N  N  N  N  I  V  T  L  I  L  L  Y  K  H  C  * </second_frame>
            <third_frame>   *  T  L  R :   F  R  I  *  Q  K  Q  K  W  E  V  V  V  I  L  *  V  I  Q  Q  L  K  I  E  F  Q  V  Q  S  P  L  L  R  L  V  I  S  R  R  L  S  L  L  I  A  F  N  A  L  S  F  A  P  L  P  I  L  F  T  I  S  Y  L  S  S  S  S  I  T  S  P  L  L  I  S  T  S  F  Q  N  R  I  I  H  T  *  H  G  L  F  I  G  S  F  K  D  V  F  A  P  H  Y  G  S  L  P  M  N  V  A  T  N  P  L  V  I  T  N  G  *  M  T  L  S  V  L  S  S  T  L  H  F  *  H  H  T  S  H  G  N  I  V  I  V  V  I  T  P  I  L  I  P  L  S  M  M  K  I  M  C  P  N  L  K  S  N  *  N  G  T  L  N  Y  T  *  I  I  H  L  D  D  Y  Y  *  L  S  S  H  S  L  L  A  Y  L  Y  T  M  P  S  I  *  P  V  D  L  M  I  V  L  Q  V  I  M  I  H  I  A  L  S  T  M  T  V  R  D  Y  K  F  T  S  Q  M  Q  V  *  L  Q  L  F  I  Y  Y  I  A  L  L  *  H  K  A  *  L  G  L  Y  A  S  M  E  Y  P  L  *  L  *  M  G  S  *  C  *  *  L  Y  C  I  T  L  M  L  H  C  H  I  M  I  H  Q  S  G  V  G  *  K  E  L  *  L  R  *  I  E  T  M  V  S  *  I  R  C  F  I  I  S  *  I  H  T  F  Y  I  I  Y  F  Q  V  Y  H  I  I  M  L  S  R  Q  P  R  P  S  S  R  Y  *  E  N  T  T  N  L  M  E  L  H  F  T  K  Q  Y  G  G  I  L  M  S  V  N  M  W  R  K  M  K  H  L  N  I  R  V  F  S  G  I  Q  I  T  T  H  N  I  H  *  *  Q  L  A  Y  E  C  V  S  Q  C  M  S  C  C  C  Y  L  Y  F  G  W  C  V  I  I  I  I  I  I  L  L  L  *  F  Y  C  T  N  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79016" stop="77859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1155</number_coding_nucleotides>
                  <number_encoded_amino_acids>385</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIAKAKMGGGGNSMSNPTTKNRVPSSKPPFTIGDIKKAIPPHCFQRSLVRSSSYLIYDLILVFIFYYIASTYFHVLPKPYYPYLAWPIYWIVQGCVCTALWVIAHECGHQSFSDYQWINDTIGFILHSALLTPYFSWKYSHRRHHSNTNSLEHDENHVPKLEVKLKWYTKLYVNNPLGRLLLIVFTLTAGLPLYYAINIAGRPYDRFASHYDPYSPIYNDRERLQIYISDAGVIATIYLLYRVALTQGLTWVICIYGVPLVIVNGFIVLITLLHHTHASLPHYDSSEWSWLKGALATVDRDYGVLNKVFHHIVDTHVLHHLFSSIPHYHAVEATKAIKPLLGEYYQFDGTPFYKAIWRDFNECQYVEKDEASQHQGIFWYTNYNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="82258" PGL_stop="82875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82258" e_stop="82284"/>
            <exon e_start="82537" e_stop="82875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.697" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82258" e_stop="82284" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.697" acc_prob="0.998">
            <gDNA_intron_boundary i_start="82285" i_stop="82536" i_length="252"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82537" e_stop="82875" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82258" stop="82284"/>
              <exon start="82537" stop="82875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCTCTCTTTAACTTATACAAAAGA : ATCTATTTTAGGATTGATCAAGAGACCATGGGAGCTGGTGGAAATATGTCTACTCCAACAACTAAAAAAAGTCATCTCCAAAGAGTTCCATCTTCGAAGCCCCCTTTTACACTTGGCGATGTGAAGAAGGCCATTCCTCCTCACTGCTTCCAACGTTCTCTTATTCGATCCTTCTCTTATCTTATTCAAGATCTCATACTTGTCTCCGTCTTCTATTATATTGCCAACACTTACTTCCATCTCCTTCCATCTCCATTAACTTACCTTGCCTGGCCCGCTTATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> S  S  L  F  N  L  Y  K  R  :  I  Y  F  R  I  D  Q  E  T  M  G  A  G  G  N  M  S  T  P  T  T  K  K  S  H  L  Q  R  V  P  S  S  K  P  P  F  T  L  G  D  V  K  K  A  I  P  P  H  C  F  Q  R  S  L  I  R  S  F  S  Y  L  I  Q  D  L  I  L  V  S  V  F  Y  Y  I  A  N  T  Y  F  H  L  L  P  S  P  L  T  Y  L  A  W  P  A  Y  C  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  H  L  S  L  T  Y  T  K  E :   S  I  L  G  L  I  K  R  P  W  E  L  V  E  I  C  L  L  Q  Q  L  K  K  V  I  S  K  E  F  H  L  R  S  P  L  L  H  L  A  M  *  R  R  P  F  L  L  T  A  S  N  V  L  L  F  D  P  S  L  I  L  F  K  I  S  Y  L  S  P  S  S  I  I  L  P  T  L  T  S  I  S  F  H  L  H  *  L  T  L  P  G  P  L  I  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   I  S  L  *  L  I  Q  K   : N  L  F  *  D  *  S  R  D  H  G  S  W  W  K  Y  V  Y  S  N  N  *  K  K  S  S  P  K  S  S  I  F  E  A  P  F  Y  T  W  R  C  E  E  G  H  S  S  S  L  L  P  T  F  S  Y  S  I  L  L  L  S  Y  S  R  S  H  T  C  L  R  L  L  L  Y  C  Q  H  L  L  P  S  P  S  I  S  I  N  L  P  C  L  A  R  L  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82258" stop="82284"/>
                    <exon start="82537" stop="82875"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLFNLYKRIYFRIDQETMGAGGNMSTPTTKKSHLQRVPSSKPPFTLGDVKKAIPPHCFQRSLIRSFSYLIQDLILVSVFYYIANTYFHLLPSPLTYLAWPAYCFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="91949" PGL_stop="92698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91949" e_stop="92698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="91949" e_stop="92698" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91949" stop="92698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578264" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGATAATTGTGTGTAATTATATATCATAGGTGCATGTTGCCTAGCAAAGGTAAACGACTTTCATAATTATGTTACAATCTCCATATAATTAGAATTGTAATTATGTGACAAGTATACAACAATTTCAACATCTCACTTAATTAAACTCCCTTAATTATATTAGTATAAGGGTTATATTCTAGAAAATCAATTTAAGTAATTTTAGAAGTTAAGGAAGGAGCCCTAAACCTAATATTTTCCTTTGTAGTCTAAATAGTGTAATATAATAATATGGTACCGTAGATTCAAAGTGGACTCCTTTATTTTTTGAGTTATTTAAGTTACCTTTTATAATCTTCGTCCATAACAATAATAACATATTTGGTTAGATTATAAGTAGGGTCTATGAAGAGTAGTGCGTACATAAATCTAAGAGTTTCCAATAGATCTTTATTTTAATGATTGCTGATATATGGAGTGATAAATAATACACCAAATATTTGAATATATAAAAATAATTTTTTTAAAATCACCCTTTTTCTTGCACTAGCTTAAAAGGAGATCAATATGTAATTTAAAACAAATTTTACGTACCTAGTCATTTCGTTAAAAAAAATGTATTTTAAGTACATGTGTTGTTAAAAATAATGAACTACTTAGTTGTTTTACAAAGAAATTGAACTCAAAGTGATTTGATATCAATAGGAAAAACAAACTTTGATTAGTCAAATATGTTATGCGTAACTAATACTACTTCCTATTTTTTTTTT</gDNA_template>
            <first_frame> E  I  I  V  C  N  Y  I  S  *  V  H  V  A  *  Q  R  *  T  T  F  I  I  M  L  Q  S  P  Y  N  *  N  C  N  Y  V  T  S  I  Q  Q  F  Q  H  L  T  *  L  N  S  L  N  Y  I  S  I  R  V  I  F  *  K  I  N  L  S  N  F  R  S  *  G  R  S  P  K  P  N  I  F  L  C  S  L  N  S  V  I  *  *  Y  G  T  V  D  S  K  W  T  P  L  F  F  E  L  F  K  L  P  F  I  I  F  V  H  N  N  N  N  I  F  G  *  I  I  S  R  V  Y  E  E  *  C  V  H  K  S  K  S  F  Q  *  I  F  I  L  M  I  A  D  I  W  S  D  K  *  Y  T  K  Y  L  N  I  *  K  *  F  F  *  N  H  P  F  S  C  T  S  L  K  G  D  Q  Y  V  I  *  N  K  F  Y  V  P  S  H  F  V  K  K  N  V  F  *  V  H  V  L  L  K  I  M  N  Y  L  V  V  L  Q  R  N  *  T  Q  S  D  L  I  S  I  G  K  T  N  F  D  *  S  N  M  L  C  V  T  N  T  T  S  Y  F  F  F </first_frame>
            <second_frame>  R  *  L  C  V  I  I  Y  H  R  C  M  L  P  S  K  G  K  R  L  S  *  L  C  Y  N  L  H  I  I  R  I  V  I  M  *  Q  V  Y  N  N  F  N  I  S  L  N  *  T  P  L  I  I  L  V  *  G  L  Y  S  R  K  S  I  *  V  I  L  E  V  K  E  G  A  L  N  L  I  F  S  F  V  V  *  I  V  *  Y  N  N  M  V  P  *  I  Q  S  G  L  L  Y  F  L  S  Y  L  S  Y  L  L  *  S  S  S  I  T  I  I  T  Y  L  V  R  L  *  V  G  S  M  K  S  S  A  Y  I  N  L  R  V  S  N  R  S  L  F  *  *  L  L  I  Y  G  V  I  N  N  T  P  N  I  *  I  Y  K  N  N  F  F  K  I  T  L  F  L  A  L  A  *  K  E  I  N  M  *  F  K  T  N  F  T  Y  L  V  I  S  L  K  K  M  Y  F  K  Y  M  C  C  *  K  *  *  T  T  *  L  F  Y  K  E  I  E  L  K  V  I  *  Y  Q  *  E  K  Q  T  L  I  S  Q  I  C  Y  A  *  L  I  L  L  P  I  F  F   </second_frame>
            <third_frame>   D  N  C  V  *  L  Y  I  I  G  A  C  C  L  A  K  V  N  D  F  H  N  Y  V  T  I  S  I  *  L  E  L  *  L  C  D  K  Y  T  T  I  S  T  S  H  L  I  K  L  P  *  L  Y  *  Y  K  G  Y  I  L  E  N  Q  F  K  *  F  *  K  L  R  K  E  P  *  T  *  Y  F  P  L  *  S  K  *  C  N  I  I  I  W  Y  R  R  F  K  V  D  S  F  I  F  *  V  I  *  V  T  F  Y  N  L  R  P  *  Q  *  *  H  I  W  L  D  Y  K  *  G  L  *  R  V  V  R  T  *  I  *  E  F  P  I  D  L  Y  F  N  D  C  *  Y  M  E  *  *  I  I  H  Q  I  F  E  Y  I  K  I  I  F  L  K  S  P  F  F  L  H  *  L  K  R  R  S  I  C  N  L  K  Q  I  L  R  T  *  S  F  R  *  K  K  C  I  L  S  T  C  V  V  K  N  N  E  L  L  S  C  F  T  K  K  L  N  S  K  *  F  D  I  N  R  K  N  K  L  *  L  V  K  Y  V  M  R  N  *  Y  Y  F  L  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0004A15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="94021" PGL_stop="98476"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94021" e_stop="94108"/>
            <exon e_start="96000" e_stop="96174"/>
            <exon e_start="96443" e_stop="96533"/>
            <exon e_start="96738" e_stop="96895"/>
            <exon e_start="97761" e_stop="97949"/>
            <exon e_start="98209" e_stop="98476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.896"/>
          <exon-intron don_prob="0.974" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.896">
            <gDNA_exon_boundary e_start="94021" e_stop="94108" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="94109" i_stop="95999" i_length="1891"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96000" e_stop="96174" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.981">
            <gDNA_intron_boundary i_start="96175" i_stop="96442" i_length="268"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96443" e_stop="96533" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.713" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96534" i_stop="96737" i_length="204"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96738" e_stop="96895" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.959">
            <gDNA_intron_boundary i_start="96896" i_stop="97760" i_length="865"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97761" e_stop="97949" e_length="189"/>
          </exon>
          <intron i_serial="5" don_prob="0.925" acc_prob="0.993">
            <gDNA_intron_boundary i_start="97950" i_stop="98208" i_length="259"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="98209" e_stop="98476" e_length="268"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94021" stop="94108"/>
              <exon start="96000" stop="96174"/>
              <exon start="96443" stop="96533"/>
              <exon start="96738" stop="96878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94032" stop="94108"/>
              <exon start="96000" stop="96174"/>
              <exon start="96443" stop="96533"/>
              <exon start="96738" stop="96895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96469" stop="96533"/>
              <exon start="96738" stop="96895"/>
              <exon start="97761" stop="97949"/>
              <exon start="98209" stop="98476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96488" stop="96533"/>
              <exon start="96738" stop="96895"/>
              <exon start="97761" stop="97949"/>
              <exon start="98209" stop="98476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97839" stop="97949"/>
              <exon start="98209" stop="98465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97840" stop="97949"/>
              <exon start="98209" stop="98465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGGGGCGCCCTAGAAAGAGGTTTGCATTGGAGTTCCTGCTTCCCAGTGGATTTTGATTTACAATGCTAGGAAGCCCATGAAACAGAG : GTACCATTATAATGTAACAGATACAAGACTAGCAGAGCATGTGGAGAAAGGGACTGAAGATGGATTATACATAAGTTGTGTGGCATCTTGTTCCGACTTCTGGGCTATTATCATGGATGCTGGAACCAATTTCACTAGCCAAGTTTATGAGCTATCACAATCATTCTTGCACAAG : GAGTGGGTTATGGAACAGTGGGAGAAGAACTATTATATTAGTTCTCTTGCTGGTGCTACCAATGGAAGCTCTCTTGTTGTAATGTCAAAAG : GCACACAGTTCAGTCAGCAGTCTTATAAAGTAAGTGAGTCATTCCCATTCAAGTGGATAAGCAAGAAGTGGAAAGAAGGGTTCAATGTAACCTCCATGGCAACTGCTGGAAGTAGGTGGGCGGTTGTTATGTCTCGTAATTCAGGTGTCAGTAACCAG : GTAGTGGAGCTTGATTTTCTTTATCCAAGTGAAGGCATTCATAAACGATGGGACAATGGTTATCGTATTACAGCAACAGCTGCTACATTAGATCAAGCTGCTCTTATCCTGAGTGTGCCTCGACGAAGGCCTGGCGATGAGACTCAGGAGACATTGAGAACATCTCAGTTTCCAAGCACACATGTTAAG : GAAAAATGGGCAAAAAATCTCTATCTTTCCTGTCTCTGCTATGGACGAACTGTATCTTGAGAGGATGGAAAATCTGATGTTGGACATTTTTCCTTCACCCCTTTTATTTTCTCATTGTCAGTCAATTGTAAAAAGTGAGGAAATCTTAATTATGGTGGCACTTGCTTCTTTTAGCTTGTTTGGATAGTGGCAAACTTTCTCGTCTCTTGTGTACATACAATTAACAGCACAAAATTACAAATCTATGAATCTTTTATATCTGTTGTGT</gDNA_template>
            <first_frame> E  G  R  P  R  K  R  F  A  L  E  F  L  L  P  S  G  F  *  F  T  M  L  G  S  P  *  N  R   : G  T  I  I  M  *  Q  I  Q  D  *  Q  S  M  W  R  K  G  L  K  M  D  Y  T  *  V  V  W  H  L  V  P  T  S  G  L  L  S  W  M  L  E  P  I  S  L  A  K  F  M  S  Y  H  N  H  S  C  T  R :   S  G  L  W  N  S  G  R  R  T  I  I  L  V  L  L  L  V  L  P  M  E  A  L  L  L  *  C  Q  K  :  A  H  S  S  V  S  S  L  I  K  *  V  S  H  S  H  S  S  G  *  A  R  S  G  K  K  G  S  M  *  P  P  W  Q  L  L  E  V  G  G  R  L  L  C  L  V  I  Q  V  S  V  T  R :   *  W  S  L  I  F  F  I  Q  V  K  A  F  I  N  D  G  T  M  V  I  V  L  Q  Q  Q  L  L  H  *  I  K  L  L  L  S  *  V  C  L  D  E  G  L  A  M  R  L  R  R  H  *  E  H  L  S  F  Q  A  H  M  L  R :   K  N  G  Q  K  I  S  I  F  P  V  S  A  M  D  E  L  Y  L  E  R  M  E  N  L  M  L  D  I  F  P  S  P  L  L  F  S  H  C  Q  S  I  V  K  S  E  E  I  L  I  M  V  A  L  A  S  F  S  L  F  G  *  W  Q  T  F  S  S  L  V  Y  I  Q  L  T  A  Q  N  Y  K  S  M  N  L  L  Y  L  L  C </first_frame>
            <second_frame>  R  G  A  L  E  R  G  L  H  W  S  S  C  F  P  V  D  F  D  L  Q  C  *  E  A  H  E  T  E  :  V  P  L  *  C  N  R  Y  K  T  S  R  A  C  G  E  R  D  *  R  W  I  I  H  K  L  C  G  I  L  F  R  L  L  G  Y  Y  H  G  C  W  N  Q  F  H  *  P  S  L  *  A  I  T  I  I  L  A  Q   : G  V  G  Y  G  T  V  G  E  E  L  L  Y  *  F  S  C  W  C  Y  Q  W  K  L  S  C  C  N  V  K  R :   H  T  V  Q  S  A  V  L  *  S  K  *  V  I  P  I  Q  V  D  K  Q  E  V  E  R  R  V  Q  C  N  L  H  G  N  C  W  K  *  V  G  G  C  Y  V  S  *  F  R  C  Q  *  P   : G  S  G  A  *  F  S  L  S  K  *  R  H  S  *  T  M  G  Q  W  L  S  Y  Y  S  N  S  C  Y  I  R  S  S  C  S  Y  P  E  C  A  S  T  K  A  W  R  *  D  S  G  D  I  E  N  I  S  V  S  K  H  T  C  *   : G  K  M  G  K  K  S  L  S  F  L  S  L  L  W  T  N  C  I  L  R  G  W  K  I  *  C  W  T  F  F  L  H  P  F  Y  F  L  I  V  S  Q  L  *  K  V  R  K  S  *  L  W  W  H  L  L  L  L  A  C  L  D  S  G  K  L  S  R  L  L  C  T  Y  N  *  Q  H  K  I  T  N  L  *  I  F  Y  I  C  C   </second_frame>
            <third_frame>   G  A  P  *  K  E  V  C  I  G  V  P  A  S  Q  W  I  L  I  Y  N  A  R  K  P  M  K  Q  R :   Y  H  Y  N  V  T  D  T  R  L  A  E  H  V  E  K  G  T  E  D  G  L  Y  I  S  C  V  A  S  C  S  D  F  W  A  I  I  M  D  A  G  T  N  F  T  S  Q  V  Y  E  L  S  Q  S  F  L  H  K  :  E  W  V  M  E  Q  W  E  K  N  Y  Y  I  S  S  L  A  G  A  T  N  G  S  S  L  V  V  M  S  K   : G  T  Q  F  S  Q  Q  S  Y  K  V  S  E  S  F  P  F  K  W  I  S  K  K  W  K  E  G  F  N  V  T  S  M  A  T  A  G  S  R  W  A  V  V  M  S  R  N  S  G  V  S  N  Q  :  V  V  E  L  D  F  L  Y  P  S  E  G  I  H  K  R  W  D  N  G  Y  R  I  T  A  T  A  A  T  L  D  Q  A  A  L  I  L  S  V  P  R  R  R  P  G  D  E  T  Q  E  T  L  R  T  S  Q  F  P  S  T  H  V  K  :  E  K  W  A  K  N  L  Y  L  S  C  L  C  Y  G  R  T  V  S  *  E  D  G  K  S  D  V  G  H  F  S  F  T  P  F  I  F  S  L  S  V  N  C  K  K  *  G  N  L  N  Y  G  G  T  C  F  F  *  L  V  W  I  V  A  N  F  L  V  S  C  V  H  T  I  N  S  T  K  L  Q  I  Y  E  S  F  I  S  V  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94035" stop="94108"/>
                    <exon start="96000" stop="96174"/>
                    <exon start="96443" stop="96533"/>
                    <exon start="96738" stop="96895"/>
                    <exon start="97761" stop="97949"/>
                    <exon start="98209" stop="98268"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEVCIGVPASQWILIYNARKPMKQRYHYNVTDTRLAEHVEKGTEDGLYISCVASCSDFWAIIMDAGTNFTSQVYELSQSFLHKEWVMEQWEKNYYISSLAGATNGSSLVVMSKGTQFSQQSYKVSESFPFKWISKKWKEGFNVTSMATAGSRWAVVMSRNSGVSNQVVELDFLYPSEGIHKRWDNGYRITATAATLDQAALILSVPRRRPGDETQETLRTSQFPSTHVKEKWAKNLYLSCLCYGRTVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="99947" PGL_stop="103797"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99947" e_stop="100073"/>
            <exon e_start="100184" e_stop="100257"/>
            <exon e_start="100343" e_stop="100412"/>
            <exon e_start="102275" e_stop="102330"/>
            <exon e_start="102486" e_stop="102557"/>
            <exon e_start="102705" e_stop="102799"/>
            <exon e_start="102883" e_stop="102949"/>
            <exon e_start="103036" e_stop="103165"/>
            <exon e_start="103275" e_stop="103495"/>
            <exon e_start="103588" e_stop="103797"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.625" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.204" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="0.713"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99947" e_stop="100073" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.991">
            <gDNA_intron_boundary i_start="100074" i_stop="100183" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100184" e_stop="100257" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="100258" i_stop="100342" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100343" e_stop="100412" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.625" acc_prob="0.969">
            <gDNA_intron_boundary i_start="100413" i_stop="102274" i_length="1862"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102275" e_stop="102330" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.943" acc_prob="0.992">
            <gDNA_intron_boundary i_start="102331" i_stop="102485" i_length="155"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102486" e_stop="102557" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.998">
            <gDNA_intron_boundary i_start="102558" i_stop="102704" i_length="147"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102705" e_stop="102799" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.946">
            <gDNA_intron_boundary i_start="102800" i_stop="102882" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="102883" e_stop="102949" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.957" acc_prob="0.976">
            <gDNA_intron_boundary i_start="102950" i_stop="103035" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="103036" e_stop="103165" e_length="130"/>
          </exon>
          <intron i_serial="8" don_prob="0.943" acc_prob="0.932">
            <gDNA_intron_boundary i_start="103166" i_stop="103274" i_length="109"/>
          </intron>
          <exon e_serial="9" e_score="0.990">
            <gDNA_exon_boundary e_start="103275" e_stop="103495" e_length="221"/>
          </exon>
          <intron i_serial="9" don_prob="0.204" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103496" i_stop="103587" i_length="92"/>
          </intron>
          <exon e_serial="10" e_score="0.713">
            <gDNA_exon_boundary e_start="103588" e_stop="103797" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99947" stop="100073"/>
              <exon start="100184" stop="100257"/>
              <exon start="100343" stop="100412"/>
              <exon start="102275" stop="102330"/>
              <exon start="102486" stop="102557"/>
              <exon start="102705" stop="102799"/>
              <exon start="102883" stop="102949"/>
              <exon start="103036" stop="103100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99947" stop="100073"/>
              <exon start="100184" stop="100257"/>
              <exon start="100343" stop="100412"/>
              <exon start="102275" stop="102330"/>
              <exon start="102486" stop="102557"/>
              <exon start="102705" stop="102796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102736" stop="102799"/>
              <exon start="102883" stop="102949"/>
              <exon start="103036" stop="103165"/>
              <exon start="103275" stop="103482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102945" stop="102949"/>
              <exon start="103036" stop="103165"/>
              <exon start="103275" stop="103495"/>
              <exon start="103588" stop="103797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103044" stop="103165"/>
              <exon start="103275" stop="103495"/>
              <exon start="103588" stop="103797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103044" stop="103165"/>
              <exon start="103275" stop="103495"/>
              <exon start="103588" stop="103770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103046" stop="103165"/>
              <exon start="103275" stop="103462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAGTAGGAATGTCGCCAGTTTATCAGGTTGAAAGGAAGTTAGGTAAAGGTGGGTTTGGTCAGGTCTTTTTGGGTCGTCGTCTTTCTGGTGGAAATGAATCTTCAAATGGTCAAGGGGCTGTTGAG : GTTGCACTGAAATTTGAGCATATGAAAAGCAAAGGCTGTAACTATGGTCCTCCACATGAGTGGCAAGTTTACAA : TACTCTTGGAGGCAGCCATGGAGTGCCTAGCGTGCATTATAAAGGGAGGGTAGGAGACTATTACGTAATG : GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTATGGAATTCCTCTGGGCAGGC : GATGTCTGCAGAAATGGTAGCATGTATTGCAGTTGAGTCTCTGTCAATTTTAAGCATAATGCATGCACAAGG : TTATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTGCTTGGTCAGCCATCAACTCTGCAGGAGAAGAAGTTGTTCCTTGTCGACTTGGGACTAG : CAACAAAGTGGAGAGAGAATGTGAAAGGTCCGCATGTGGTATATGATCAGCGACCTGACATGTTTAG : AGGGACTGTTCGGTATGCAAGTGCTCATGCACACTTGGGAAGGACTGCCAGTAGAAGAGATGATCTGGAATCACTTGCATATACACTCATTTTTCTTCACAGAGGCAGGTTGCCATGGCAAGGATTTCAG : GGAGATAACAAATCGTTTTTGGTCTGCAAAAAGAAGATGGCAACATCTCCAGAAATGCTTTGCTGTTTCTGTCCATCACCTCTGAGAGAATTTCTTGATATAGTAATAAACATGAAATTTGATGAAGAACCTAATTATTCGAAGTTAATCTCCCTTATTTGGGAGCTTGCTTGGACCTGATCCTGCTATAAGGCCAATCAACACCGATGGGGCCCAAAAAG : ATTCCTTCAAGTGGGCCAAAAACCGGGGGGAAATAAATTGTAAAAGGAAGGGGGAAAAAAAACCCTAAAAAAGAAGGGTACGCACCCCGAGTTTCCGCCAACCACGCTGATTTTCATTTACCAATGCCATGGAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> E  S  R  N  V  A  S  L  S  G  *  K  E  V  R  *  R  W  V  W  S  G  L  F  G  S  S  S  F  W  W  K  *  I  F  K  W  S  R  G  C  *   : G  C  T  E  I  *  A  Y  E  K  Q  R  L  *  L  W  S  S  T  *  V  A  S  L  Q  :  Y  S  W  R  Q  P  W  S  A  *  R  A  L  *  R  E  G  R  R  L  L  R  N   : G  Y  G  H  A  R  A  *  L  M  G  C  M  E  F  L  W  A  G  :  D  V  C  R  N  G  S  M  Y  C  S  *  V  S  V  N  F  K  H  N  A  C  T  R  :  L  C  A  W  R  C  K  A  R  E  L  F  A  W  S  A  I  N  S  A  G  E  E  V  V  P  C  R  L  G  T  S :   N  K  V  E  R  E  C  E  R  S  A  C  G  I  *  S  A  T  *  H  V  *  :  R  D  C  S  V  C  K  C  S  C  T  L  G  K  D  C  Q  *  K  R  *  S  G  I  T  C  I  Y  T  H  F  S  S  Q  R  Q  V  A  M  A  R  I  S   : G  R  *  Q  I  V  F  G  L  Q  K  E  D  G  N  I  S  R  N  A  L  L  F  L  S  I  T  S  E  R  I  S  *  Y  S  N  K  H  E  I  *  *  R  T  *  L  F  E  V  N  L  P  Y  L  G  A  C  L  D  L  I  L  L  *  G  Q  S  T  P  M  G  P  K  K  :  I  P  S  S  G  P  K  T  G  G  K  *  I  V  K  G  R  G  K  K  N  P  K  K  E  G  Y  A  P  R  V  S  A  N  H  A  D  F  H  L  P  M  P  W  R  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  K  V  G  M  S  P  V  Y  Q  V  E  R  K  L  G  K  G  G  F  G  Q  V  F  L  G  R  R  L  S  G  G  N  E  S  S  N  G  Q  G  A  V  E  :  V  A  L  K  F  E  H  M  K  S  K  G  C  N  Y  G  P  P  H  E  W  Q  V  Y  N :   T  L  G  G  S  H  G  V  P  S  V  H  Y  K  G  R  V  G  D  Y  Y  V  M  :  V  M  D  M  L  G  P  S  L  W  D  V  W  N  S  S  G  Q  A :   M  S  A  E  M  V  A  C  I  A  V  E  S  L  S  I  L  S  I  M  H  A  Q  G :   Y  V  H  G  D  V  K  P  E  N  F  L  L  G  Q  P  S  T  L  Q  E  K  K  L  F  L  V  D  L  G  L   : A  T  K  W  R  E  N  V  K  G  P  H  V  V  Y  D  Q  R  P  D  M  F  R :   G  T  V  R  Y  A  S  A  H  A  H  L  G  R  T  A  S  R  R  D  D  L  E  S  L  A  Y  T  L  I  F  L  H  R  G  R  L  P  W  Q  G  F  Q  :  G  D  N  K  S  F  L  V  C  K  K  K  M  A  T  S  P  E  M  L  C  C  F  C  P  S  P  L  R  E  F  L  D  I  V  I  N  M  K  F  D  E  E  P  N  Y  S  K  L  I  S  L  I  W  E  L  A  W  T  *  S  C  Y  K  A  N  Q  H  R  W  G  P  K  R :   F  L  Q  V  G  Q  K  P  G  G  N  K  L  *  K  E  G  G  K  K  T  L  K  K  K  G  T  H  P  E  F  P  P  T  T  L  I  F  I  Y  Q  C  H  G  D  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   K  *  E  C  R  Q  F  I  R  L  K  G  S  *  V  K  V  G  L  V  R  S  F  W  V  V  V  F  L  V  E  M  N  L  Q  M  V  K  G  L  L  R :   L  H  *  N  L  S  I  *  K  A  K  A  V  T  M  V  L  H  M  S  G  K  F  T   : I  L  L  E  A  A  M  E  C  L  A  C  I  I  K  G  G  *  E  T  I  T  *  W :   L  W  T  C  *  G  L  A  Y  G  M  Y  G  I  P  L  G  R   : R  C  L  Q  K  W  *  H  V  L  Q  L  S  L  C  Q  F  *  A  *  C  M  H  K   : V  M  C  M  E  M  *  S  Q  R  T  F  C  L  V  S  H  Q  L  C  R  R  R  S  C  S  L  S  T  W  D  *  :  Q  Q  S  G  E  R  M  *  K  V  R  M  W  Y  M  I  S  D  L  T  C  L   : E  G  L  F  G  M  Q  V  L  M  H  T  W  E  G  L  P  V  E  E  M  I  W  N  H  L  H  I  H  S  F  F  F  T  E  A  G  C  H  G  K  D  F  R :   E  I  T  N  R  F  W  S  A  K  R  R  W  Q  H  L  Q  K  C  F  A  V  S  V  H  H  L  *  E  N  F  L  I  *  *  *  T  *  N  L  M  K  N  L  I  I  R  S  *  S  P  L  F  G  S  L  L  G  P  D  P  A  I  R  P  I  N  T  D  G  A  Q  K   : D  S  F  K  W  A  K  N  R  G  E  I  N  C  K  R  K  G  E  K  K  P  *  K  R  R  V  R  T  P  S  F  R  Q  P  R  *  F  S  F  T  N  A  M  E  T  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0004A15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99948" stop="100073"/>
                    <exon start="100184" stop="100257"/>
                    <exon start="100343" stop="100412"/>
                    <exon start="102275" stop="102330"/>
                    <exon start="102486" stop="102557"/>
                    <exon start="102705" stop="102799"/>
                    <exon start="102883" stop="102949"/>
                    <exon start="103036" stop="103165"/>
                    <exon start="103275" stop="103454"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVGMSPVYQVERKLGKGGFGQVFLGRRLSGGNESSNGQGAVEVALKFEHMKSKGCNYGPPHEWQVYNTLGGSHGVPSVHYKGRVGDYYVMVMDMLGPSLWDVWNSSGQAMSAEMVACIAVESLSILSIMHAQGYVHGDVKPENFLLGQPSTLQEKKLFLVDLGLATKWRENVKGPHVVYDQRPDMFRGTVRYASAHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGFQGDNKSFLVCKKKMATSPEMLCCFCPSPLREFLDIVINMKFDEEPNYSKLISLIWELAWT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 354 chains have been computed
$ 
$ memory statistics:
$ 219376 bytes spliced alignments in total
$ 106 spliced alignments have been stored
$ 2069 bytes was the average size of a spliced alignment
$ 24816 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1772 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 388 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-06 12:02:40
-->
