<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 08:34:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLm0123M18-vj7a4/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLm0123M18-vj7a4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0123M18-vj7a4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9068" ref_strand="-" ref_description="SGN-M9068 C2_At5g53800 [cosii_markers]">
      <seq>cagggcgaaagagcgagtaaaagcttcagaagacgaaaatggagcgactccatcgaagcggcaacacaaatcaaaatccaaaagagaagatgaatctgaatccgaaccggaacgagaagtgagaaaacaccgcagaaagagaagtcgaagttctagaagaagatcgcgggatgattatgacgattcggattcttcatcatctggagaagattcgtattcggactctgaagactcgtattcggattcagagtcgggtagtagttcggagtattcggattcggaagaggagaggaggcgtagaaagaggagagataggaagagaagagaggaaaaggagagagaagaaagagaggaagaagaaaaagaaagagaaggggaaaactggtgctgttacaaactcttggggaaaatatggaatcatcaaggaaactgatatgtggaacaaacggccagagtttaccgcatggttggcagaaataaagaaggtgaatctggaaagcctgccaaattgggaagagaagcaattgttcaagcaattcatggaggatcataacactgcaaccttcccttctaaaaaatattataaccttgacgcctattacagacgtaaaatggaaaaggaaagtagaagaggtgtcaagaaggtcgtggacgatgaacgtactgtcttcgatgatgaagaacagcgcaggcaagaactgatgcgagagcgtgagaagcacaagcaagaacaggtggaaacattgaagcgcgagatgcagagtggaatggcgcaagcaatgaaagaacaagctcaattaagagaagagatggcttatcaatacaagcttggtaactttgaggctgcagctgctattcaaagacgtttggaccctgatctccctatgtagacgaggttctgcaaaattttggtctacgctacaacggattacattagactacatgttttagtttttctgtctccttttcgttgagtaaatatgcttgcagattcatctgcaagtctaagcttattactagatatcactaggctagatgagttgaaatctagttcatgtattgttgtgtaatatcatttgcactcccatctttttattctcttcgatctccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-vj7a4/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="28259" stop="32338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28558" g_stop="28896" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28897" i_stop="28964" i_length="68">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28965" g_stop="29064" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="439" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29065" i_stop="30014" i_length="950">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30015" g_stop="30060" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="485" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30061" i_stop="30306" i_length="246">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30307" g_stop="30356" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="535" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30357" i_stop="30477" i_length="121">
            <donor d_prob="0.495" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30478" g_stop="30519" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="577" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30520" i_stop="30756" i_length="237">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30757" g_stop="30870" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="691" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30871" i_stop="31444" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31445" g_stop="31523" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="770" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31524" i_stop="31623" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31624" g_stop="31695" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="842" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31696" i_stop="31769" i_length="74">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="31770" g_stop="32038" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="1111" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1112" polyA_stop="1128"/>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-M9068" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1111</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9068" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28558" e_stop="28896"/>
          <exon e_start="28965" e_stop="29064"/>
          <exon e_start="30015" e_stop="30060"/>
          <exon e_start="30307" e_stop="30356"/>
          <exon e_start="30478" e_stop="30519"/>
          <exon e_start="30757" e_stop="30870"/>
          <exon e_start="31445" e_stop="31523"/>
          <exon e_start="31624" e_stop="31695"/>
          <exon e_start="31770" e_stop="32038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGAAAGAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAGAGAGAAGAAACGAAAGCTGAGGAAAGAGAAGGAGAAGGAGAAGAAGAAGAGGAGGAAGAAGGAGAAAGAGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTGGTGAGCAACTTTTCATGGCTTTAACTTTTTTAGTGTTTACTTCTTTGGATTATGAATTGAATTAATGCTTGAAATGTTGGTTTGGAGTAGTGATTTGAAGTGTATTAGTAAAGGAAATGACTTCTCTTTTGATAAAAATGTATTCTTTGGCTAATACTTGAAAGACATAACTACTTGATTGTAAGCAAACCACAACAACATACCCGGCATTATGCTTACCTTTTGTATTGGAGCTATCGATATCTTCTGGTTTGTATGTCTTGTTTCTTATGCATCTTCTTGATGCCTTTAAAAGATATAATCTTACTTCATGAAAAAAGGAGACAATGCTGTCTTTACACTCCCCACCCTACACATCTTTGGTTGTGTTAAGATTTATGTTGGCTCCGTTATCTGTCCTTGAGACTGGCTTTGTGAGCAAGCTCACACGGGTGAGTGATTATTCTACAAATTTTAGGCTTTACCCCTTAATGTAACTTGAATGCTCTGAACAATCATTCAATCTATCCTCTGTTCCATTATATAGGTTAGAACATATGATTTCCAGACAGAGCCTTACTTTTGGATCATTTTCTGGCATAATTGTTAAGAGGATGCAGCATTTTGAGTAGTGAGAGACATGCTATTGACTCCTATATTGTCCAGAAAGAAGTCAGTCATATTGCTGTATATGAAGATATACCTTTTTTTTTATATTGTGGTTGGACCATTCATCTGTGTAGATGTACCTTTTATTTATATAAAAGAGAGTGGAAATTTCTGAATTCGTGCATTATTACGGTGATAATATGTTTATGCTTGAACTAATTACGATGGATTCTCGTCACCTTCTTGTGTGTTGCAATTTTATTTCAGAAGGTTGCAGGAAATGTTTCTCTTCACTTTGGTGTCAGTTTTAATGATCAGATTGTTTTTATATAGATTTCAACTTTAGTTATTGCTTATTGTAGGAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAGGTACGTAGTGACTCTTTAAGCTTATGCATGTTGATCATCCACACAGGACTTGTTGCAGGATATGCCAATTGTTTTGATAAATATTTTTGGATAGGTCTTCATTTTCCATTTAGTGCACTATAGTGCATTTCCAAAGGTCCCCATTAAAAAGCTTCCATTGCATAGCACTACATTCTCTTTCTATTCAATTTTGTGTAAGATATTATATCTAGTTGTGGAAGTTCTCATTTCTTATGTCATTTATAGGTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCAGTAAGTAAATCGAGAAGGGATAAGCTTGTTCTTATTAGCACCTGTTCTTTCCCTTTCTCTACCTCTGTTTAAGCAATATATGCAAGGAACTTCCACTTTTTTATAGTCAACTATTGTGCAGATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAAGTAAGGCTACTGCACTATTTCAATCTAAACTTATTTTTCTGGTTGGGATGGGTTTTTTTTTCTATATTGGCAATAAATGTATTGAGTTGGGTGTTTTATGTGAGGCTTCTAGTTCCTTGCAGGATGATATGTGTTTGTACACACATATACACGTAGAGAGATAGGTATACAGATGCTTGATATTTGAGTTATGTTATAATCATCTAACAGTACGTCTGTTATTCTTCATTTTTGCAGATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAGGTAAGTCATGGACACGGTTGCCATTTCATTTGATAAATCGTTTTTTGGTTGAGTAGTATGAAGTCAGCTAAGGGCATGACACAAATTCAAATACTGTTAGAGAACCAAGTTTGGACTTTTGGTTTTTAAATCTAGAAGGATACACCTATTATCCACTGAATTTACGTTTCAAAGCTGGAACATCGGATTTCTTATTTCTTATTTAGAGGAAATAACTTTGAAGTTTCAAATTTCTAATGTGATCTCGTGCTCTTTGGAGCTATTTGAACAGAGCCACTATCCTGCAGTGGTGGTATAGATTATTGCTTTGCCCTAGTTTAATCTTTCAGACCTGAAACCACATTATAATACTCAAAGATGGTGGTATGTATAAAATTTTAGCATCCTGGAAGCTATAGGATCCCACATTAAGCAAGTACTATATAGTTAAACATACAAGAGTATTTTTTTTTTCCTGAAGACAAATCGGCTCCAACTTTTGTCATTGAAAGGGAAAAAAGGGGAGGAGATTTTCATCTTTCCATTAAATTGGCATAGTCTGGTTTTTGAGTCGTTACGTATTCTGTTATTGTAGGCAAGAACTGATGCGAGAGCGTGAGAAGCACAAGCAAGAACAGGTGGAAACATTGAAGCGCGAGATGCAGAGTGGAATGGTATGTATTCTGCTACCTTTGTCCTTTCTCCATACAACAGGTGAAAAGTATATAATGTGACGAACTCCTCTCTTTTTGTTTGTAAATTTGAATCTCTAAGGCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAGGTGAGAATGAGCCTTATCATGATACACTATTTTCTTTTTCCGCTCATTGATCTTATTTTCCGATGTCCTGATAGGCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTTCTGCAAAATTTTGGTCTACGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTTCTGTCTCCTTTTCGTTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTAAGCTTATTACTAGATATCACTAGGCTAGATGAGTTGAAATCTAGTTCATGTATTGTTGTGTAATATCATTTGCACTCCCATCTTTTTATTCTCTTCGATCTCCA</genome_strand>
        <mrna_strand>CAGGGCGAAAGAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAG....................................................................AGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAG......................................................................................................................................................................................................................................................GTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCA.........................................................................................................................ATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAA.............................................................................................................................................................................................................................................ATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAACTGATGCGAGAGCGTGAGAAGCACAAGCAAGAACAGGTGGAAACATTGAAGCGCGAGATGCAGAGTGGAATG....................................................................................................GCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAG..........................................................................GCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTTCTGCAAAATTTTGGTCTACGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTTCTGTCTCCTTTTCGTTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTAAGCTTATTACTAGATATCACTAGGCTAGATGAGTTGAAATCTAGTTCATGTATTGTTGTGTAATATCATTTGCACTCCCATCTTTTTATTCTCTTCGATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0123M18-vj7a4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9068-2" ref_strand="+" ref_description="SGN-M9068-2 C2_At5g53800-2 [cosii_markers]">
      <seq>tattcggattcggagtcgggtagtagttcggagtattcggattcggaagaggagaggaggcgtagaaagaggagagataggaagagaagagaggaaaaagagaaagagaagaaacgaaagctgaggaaagagaaggagaagaagaggaggaagaaggagaaagagaagaaggagagaaagaagaaaaagaaagagaaggggaaaactggtgctgttacaaactcttggggaaaatatggaatcatcaaggaaactgatatgtggaacaaacggccagagtttaccgcatggttggcagaaataaagaaggtgaatctggaaagcctgcccaattgggaagagaagcaactgttcaagcaattcatggaggatcataatactgcaaccttcccttctaaaaaatattataaccttgacgcctattacagacgtaaaatggaaaaggaatgcagaagaggtgtcaagaaggtcgtggacgatgaacgtactgtcttcgatgatgaagaacagcgcaggcaagaattgatgcgagaacgtgagaagcacaagcaagaacaggtggaagcattgaagtgcgagatgcagagtggaatggcgcaagcaatgaaagaacaagctcaattaagagaagagatggcttatcaatacaagcttggtaactttgaggctgcagctgctattcaaagacgtttggaccctgatctccctatgtagacgaggtcctgcaaaattttggcctaggctacaacggattacattagactacatgttttagttttactcgctccttttcgctgagtaaatatgcttgcagattcatctgcaagtctgcgcttcttactagatatcactaggctagatgagttgaaatctggtccatgtattgttgtgtaatatcatctgcactcccatctttttactctgttctccaccttaatgatgttaagtgacaaattaaccttgcattaagactgatgtcgaatatgtcctataaaaagttacctgtttaaccttttcaaaaattgaatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-vj7a4/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="28493" stop="32394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28793" g_stop="29064" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29065" i_stop="30014" i_length="950">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30015" g_stop="30060" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="309" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30061" i_stop="30306" i_length="246">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30307" g_stop="30356" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="359" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30357" i_stop="30477" i_length="121">
            <donor d_prob="0.495" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30478" g_stop="30519" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="401" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30520" i_stop="30756" i_length="237">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30757" g_stop="30870" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="515" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30871" i_stop="31444" i_length="574">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31445" g_stop="31523" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="594" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31524" i_stop="31623" i_length="100">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31624" g_stop="31695" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="666" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31696" i_stop="31769" i_length="74">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31770" g_stop="32089" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="976" r_length="310" r_score="0.919"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32090" i_stop="32139" i_length="50">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="32140" g_stop="32204" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="977" r_stop="1041" r_length="65" r_score="0.831"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-M9068-2" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>1060</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9068-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28793" e_stop="29064"/>
          <exon e_start="30015" e_stop="30060"/>
          <exon e_start="30307" e_stop="30356"/>
          <exon e_start="30478" e_stop="30519"/>
          <exon e_start="30757" e_stop="30870"/>
          <exon e_start="31445" e_stop="31523"/>
          <exon e_start="31624" e_stop="31695"/>
          <exon e_start="31770" e_stop="32089"/>
          <exon e_start="32140" e_stop="32204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAGAGAGAAGAAACGAAAGCTGAGGAAAGAGAAGGAGAAGGAGAAGAAGAAGAGGAGGAAGAAGGAGAAAGAGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTGGTGAGCAACTTTTCATGGCTTTAACTTTTTTAGTGTTTACTTCTTTGGATTATGAATTGAATTAATGCTTGAAATGTTGGTTTGGAGTAGTGATTTGAAGTGTATTAGTAAAGGAAATGACTTCTCTTTTGATAAAAATGTATTCTTTGGCTAATACTTGAAAGACATAACTACTTGATTGTAAGCAAACCACAACAACATACCCGGCATTATGCTTACCTTTTGTATTGGAGCTATCGATATCTTCTGGTTTGTATGTCTTGTTTCTTATGCATCTTCTTGATGCCTTTAAAAGATATAATCTTACTTCATGAAAAAAGGAGACAATGCTGTCTTTACACTCCCCACCCTACACATCTTTGGTTGTGTTAAGATTTATGTTGGCTCCGTTATCTGTCCTTGAGACTGGCTTTGTGAGCAAGCTCACACGGGTGAGTGATTATTCTACAAATTTTAGGCTTTACCCCTTAATGTAACTTGAATGCTCTGAACAATCATTCAATCTATCCTCTGTTCCATTATATAGGTTAGAACATATGATTTCCAGACAGAGCCTTACTTTTGGATCATTTTCTGGCATAATTGTTAAGAGGATGCAGCATTTTGAGTAGTGAGAGACATGCTATTGACTCCTATATTGTCCAGAAAGAAGTCAGTCATATTGCTGTATATGAAGATATACCTTTTTTTTTATATTGTGGTTGGACCATTCATCTGTGTAGATGTACCTTTTATTTATATAAAAGAGAGTGGAAATTTCTGAATTCGTGCATTATTACGGTGATAATATGTTTATGCTTGAACTAATTACGATGGATTCTCGTCACCTTCTTGTGTGTTGCAATTTTATTTCAGAAGGTTGCAGGAAATGTTTCTCTTCACTTTGGTGTCAGTTTTAATGATCAGATTGTTTTTATATAGATTTCAACTTTAGTTATTGCTTATTGTAGGAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAGGTACGTAGTGACTCTTTAAGCTTATGCATGTTGATCATCCACACAGGACTTGTTGCAGGATATGCCAATTGTTTTGATAAATATTTTTGGATAGGTCTTCATTTTCCATTTAGTGCACTATAGTGCATTTCCAAAGGTCCCCATTAAAAAGCTTCCATTGCATAGCACTACATTCTCTTTCTATTCAATTTTGTGTAAGATATTATATCTAGTTGTGGAAGTTCTCATTTCTTATGTCATTTATAGGTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCAGTAAGTAAATCGAGAAGGGATAAGCTTGTTCTTATTAGCACCTGTTCTTTCCCTTTCTCTACCTCTGTTTAAGCAATATATGCAAGGAACTTCCACTTTTTTATAGTCAACTATTGTGCAGATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAAGTAAGGCTACTGCACTATTTCAATCTAAACTTATTTTTCTGGTTGGGATGGGTTTTTTTTTCTATATTGGCAATAAATGTATTGAGTTGGGTGTTTTATGTGAGGCTTCTAGTTCCTTGCAGGATGATATGTGTTTGTACACACATATACACGTAGAGAGATAGGTATACAGATGCTTGATATTTGAGTTATGTTATAATCATCTAACAGTACGTCTGTTATTCTTCATTTTTGCAGATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAGGTAAGTCATGGACACGGTTGCCATTTCATTTGATAAATCGTTTTTTGGTTGAGTAGTATGAAGTCAGCTAAGGGCATGACACAAATTCAAATACTGTTAGAGAACCAAGTTTGGACTTTTGGTTTTTAAATCTAGAAGGATACACCTATTATCCACTGAATTTACGTTTCAAAGCTGGAACATCGGATTTCTTATTTCTTATTTAGAGGAAATAACTTTGAAGTTTCAAATTTCTAATGTGATCTCGTGCTCTTTGGAGCTATTTGAACAGAGCCACTATCCTGCAGTGGTGGTATAGATTATTGCTTTGCCCTAGTTTAATCTTTCAGACCTGAAACCACATTATAATACTCAAAGATGGTGGTATGTATAAAATTTTAGCATCCTGGAAGCTATAGGATCCCACATTAAGCAAGTACTATATAGTTAAACATACAAGAGTATTTTTTTTTTCCTGAAGACAAATCGGCTCCAACTTTTGTCATTGAAAGGGAAAAAAGGGGAGGAGATTTTCATCTTTCCATTAAATTGGCATAGTCTGGTTTTTGAGTCGTTACGTATTCTGTTATTGTAGGCAAGAACTGATGCGAGAGCGTGAGAAGCACAAGCAAGAACAGGTGGAAACATTGAAGCGCGAGATGCAGAGTGGAATGGTATGTATTCTGCTACCTTTGTCCTTTCTCCATACAACAGGTGAAAAGTATATAATGTGACGAACTCCTCTCTTTTTGTTTGTAAATTTGAATCTCTAAGGCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAGGTGAGAATGAGCCTTATCATGATACACTATTTTCTTTTTCCGCTCATTGATCTTATTTTCCGATGTCCTGATAGGCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTTCTGCAAAATTTTGGTCTACGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTTCTGTCTCCTTTTCGTTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTAAGCTTATTACTAGATATCACTAGGCTAGATGAGTTGAAATCTAGTTCATGTATTGTTGTGTAATATCATTTGCACTCCCATCTTTTTATTCTCTTCGATCTCCACCTTATTGATGTTAATCCCTAGTAGCAAATTAACCTTGCATTAAGACTGATATCGATGCCTCTTATTTTCTTGCAACTCTACAAACAAGAAATATAAGCGTGTCGAATTCGTCCTATAAAAAGTTGCCTGTTTAACCTTTTGAAAAATTGAATTTGACGGATTAGA</genome_strand>
        <mrna_strand>TATTCGGATTCGGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAAGAGAAAGAGAAGAAACGAAAGCTGA-G---GA-AA-GAGAA-G-G-AGAAGAAGAGGAGGAAGAAGGAGAAAGAGAAGAAGGAGAGAAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAG......................................................................................................................................................................................................................................................GTGAATCTGGAAAGCCTGCCCAATTGGGAAGAGAAGCAACTGTTCAAGCA.........................................................................................................................ATTCATGGAGGATCATAATACTGCAACCTTCCCTTCTAAAAA.............................................................................................................................................................................................................................................ATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAATGCAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAATTGATGCGAGAACGTGAGAAGCACAAGCAAGAACAGGTGGAAGCATTGAAGTGCGAGATGCAGAGTGGAATG....................................................................................................GCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAG..........................................................................GCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTCCTGCAAAATTTTGGCCTAGGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTACTCGCTCCTTTTCGCTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTGCGCTTCTTACTAGATATCACTAGGCTAGATGAGTTGAAATCTGGTCCATGTATTGTTGTGTAATATCATCTGCACTCCCATCTTTTTA--CTC-T-GTTCTCCACCTTAATGATGTTAA---GT-G-A-CAAATTAACCTTGCATTAAGACTGAT..................................................GTCGAATATGTCCTATAAAAAGTTACCTGTTTAACCTTTTCAAAAATTGAATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0123M18-vj7a4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1758" ref_strand="+" ref_description="SGN-M1758 T1093 [cos_markers]">
      <seq>aaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaagtcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-vj7a4/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="+" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59380" stop="61483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59680" g_stop="59801" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60145" g_stop="60240" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="218" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60740" g_stop="61183" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="662" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="+" ref_id="SGN-M1758" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59680" e_stop="59801"/>
          <exon e_start="60145" e_stop="60240"/>
          <exon e_start="60740" e_stop="61183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCAT</genome_strand>
        <mrna_strand>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAGTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0123M18-vj7a4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1721" ref_strand="+" ref_description="SGN-M1721 T1045 [cos_markers]">
      <seq>atcttgaagcttaaaaaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagntttgcttttgttatctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0123M18-vj7a4/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12SLm0123M18.1" temp_strand="-" temp_description="C12SLm0123M18.1  AC216368.1 htgs_phase:1 submitted_to_sgn_as:C12SLm0123M18 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65308" stop="63508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65008" g_stop="64766" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64020" g_stop="63808" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="457" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0123M18.1" gen_strand="-" ref_id="SGN-M1721" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0123M18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65008" e_stop="64766"/>
          <exon e_start="64020" e_stop="63808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGAAGC-TAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGA</genome_strand>
        <mrna_strand>ATCTTGAAGCTTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGNTTTGCTTTTGTTATCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="28558" PGL_stop="32204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28558" e_stop="28896"/>
            <exon e_start="28965" e_stop="29064"/>
            <exon e_start="30015" e_stop="30060"/>
            <exon e_start="30307" e_stop="30356"/>
            <exon e_start="30478" e_stop="30519"/>
            <exon e_start="30757" e_stop="30870"/>
            <exon e_start="31445" e_stop="31523"/>
            <exon e_start="31624" e_stop="31695"/>
            <exon e_start="31770" e_stop="32038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.495" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="28558" e_stop="28896" e_length="339"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28897" i_stop="28964" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28965" e_stop="29064" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29065" i_stop="30014" i_length="950"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30015" e_stop="30060" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30061" i_stop="30306" i_length="246"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30307" e_stop="30356" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.495" acc_prob="0.938">
            <gDNA_intron_boundary i_start="30357" i_stop="30477" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30478" e_stop="30519" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30520" i_stop="30756" i_length="237"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30757" e_stop="30870" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30871" i_stop="31444" i_length="574"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31445" e_stop="31523" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.966">
            <gDNA_intron_boundary i_start="31524" i_stop="31623" i_length="100"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31624" e_stop="31695" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31696" i_stop="31769" i_length="74"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31770" e_stop="32038" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28558" stop="28896"/>
              <exon start="28965" stop="29064"/>
              <exon start="30015" stop="30060"/>
              <exon start="30307" stop="30356"/>
              <exon start="30478" stop="30519"/>
              <exon start="30757" stop="30870"/>
              <exon start="31445" stop="31523"/>
              <exon start="31624" stop="31695"/>
              <exon start="31770" stop="32038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9068" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGGCGAAAGAGCGAGTAAAAGCTTCAGAAGACGAAAATGGAGCGACTCCATCGAAGCGGCAACACAAATCAAAATCCAAAAGAGAAGATGAATCTGAATCCGAACCGGAACGAGAAGTGAGAAAACACCGCAGAAAGAGAAGTCGAAGTTCTAGAAGAAGATCGCGGGATGATTATGACGATTCGGATTCTTCATCATCTGGAGAAGATTCGTATTCGGACTCTGAAGACTCGTATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAG : AGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTG : GAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAG : GTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCA : ATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAA : ATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAG : GCAAGAACTGATGCGAGAGCGTGAGAAGCACAAGCAAGAACAGGTGGAAACATTGAAGCGCGAGATGCAGAGTGGAATG : GCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAG : GCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTTCTGCAAAATTTTGGTCTACGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTTCTGTCTCCTTTTCGTTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTAAGCTTATTACTAGATATCACTAGGCTAGATGAGTTGAAATCTAGTTCATGTATTGTTGTGTAATATCATTTGCACTCCCATCTTTTTATTCTCTTCGATCTCCA</gDNA_template>
            <first_frame> N  G  E  R  A  S  K  S  F  R  R  R  K  W  S  D  S  I  E  A  A  T  Q  I  K  I  Q  K  R  R  *  I  *  I  R  T  G  T  R  S  E  K  T  P  Q  K  E  K  S  K  F  *  K  K  I  A  G  *  L  *  R  F  G  F  F  I  I  W  R  R  F  V  F  G  L  *  R  L  V  F  G  F  R  V  G  *  *  F  G  V  F  G  F  G  R  G  E  E  A  *  K  E  E  R  *  E  E  K  R  G  K  G  E  :  R  R  K  R  G  R  R  K  R  K  R  R  G  K  L  V  L  L  Q  T  L  G  E  N  M  E  S  S  R  K  L  I  C   : G  T  N  G  Q  S  L  P  H  G  W  Q  K  *  R  R :   *  I  W  K  A  C  Q  I  G  K  R  S  N  C  S  S   : N  S  W  R  I  I  T  L  Q  P  S  L  L  K   : N  I  I  T  L  T  P  I  T  D  V  K  W  K  R  K  V  E  E  V  S  R  R  S  W  T  M  N  V  L  S  S  M  M  K  N  S  A   : G  K  N  *  C  E  S  V  R  S  T  S  K  N  R  W  K  H  *  S  A  R  C  R  V  E  W :   R  K  Q  *  K  N  K  L  N  *  E  K  R  W  L  I  N  T  S  L  V  T  L  R :   L  Q  L  L  F  K  D  V  W  T  L  I  S  L  C  R  R  G  S  A  K  F  W  S  T  L  Q  R  I  T  L  D  Y  M  F  *  F  F  C  L  L  F  V  E  *  I  C  L  Q  I  H  L  Q  V  *  A  Y  Y  *  I  S  L  G  *  M  S  *  N  L  V  H  V  L  L  C  N  I  I  C  T  P  I  F  L  F  S  S  I  S  </first_frame>
            <second_frame>  M  A  K  E  R  V  K  A  S  E  D  E  N  G  A  T  P  S  K  R  Q  H  K  S  K  S  K  R  E  D  E  S  E  S  E  P  E  R  E  V  R  K  H  R  R  K  R  S  R  S  S  R  R  R  S  R  D  D  Y  D  D  S  D  S  S  S  S  G  E  D  S  Y  S  D  S  E  D  S  Y  S  D  S  E  S  G  S  S  S  E  Y  S  D  S  E  E  E  R  R  R  R  K  R  R  D  R  K  R  R  E  E  K  E  R :   E  E  R  E  E  E  E  K  E  R  E  G  E  N  W  C  C  Y  K  L  L  G  K  I  W  N  H  Q  G  N  *  Y  V  :  E  Q  T  A  R  V  Y  R  M  V  G  R  N  K  E   : G  E  S  G  K  P  A  K  L  G  R  E  A  I  V  Q  A  :  I  H  G  G  S  *  H  C  N  L  P  F  *  K  :  I  L  *  P  *  R  L  L  Q  T  *  N  G  K  G  K  *  K  R  C  Q  E  G  R  G  R  *  T  Y  C  L  R  *  *  R  T  A  Q  :  A  R  T  D  A  R  A  *  E  A  Q  A  R  T  G  G  N  I  E  A  R  D  A  E  W  N   : G  A  S  N  E  R  T  S  S  I  K  R  R  D  G  L  S  I  Q  A  W  *  L  *   : G  C  S  C  Y  S  K  T  F  G  P  *  S  P  Y  V  D  E  V  L  Q  N  F  G  L  R  Y  N  G  L  H  *  T  T  C  F  S  F  S  V  S  F  S  L  S  K  Y  A  C  R  F  I  C  K  S  K  L  I  T  R  Y  H  *  A  R  *  V  E  I  *  F  M  Y  C  C  V  I  S  F  A  L  P  S  F  Y  S  L  R  S  P </second_frame>
            <third_frame>   W  R  K  S  E  *  K  L  Q  K  T  K  M  E  R  L  H  R  S  G  N  T  N  Q  N  P  K  E  K  M  N  L  N  P  N  R  N  E  K  *  E  N  T  A  E  R  E  V  E  V  L  E  E  D  R  G  M  I  M  T  I  R  I  L  H  H  L  E  K  I  R  I  R  T  L  K  T  R  I  R  I  Q  S  R  V  V  V  R  S  I  R  I  R  K  R  R  G  G  V  E  R  G  E  I  G  R  E  E  R  K  R  R   : E  K  K  E  R  K  K  K  K  K  E  K  G  K  T  G  A  V  T  N  S  W  G  K  Y  G  I  I  K  E  T  D  M  W :   N  K  R  P  E  F  T  A  W  L  A  E  I  K  K  :  V  N  L  E  S  L  P  N  W  E  E  K  Q  L  F  K  Q :   F  M  E  D  H  N  T  A  T  F  P  S  K  K :   Y  Y  N  L  D  A  Y  Y  R  R  K  M  E  K  E  S  R  R  G  V  K  K  V  V  D  D  E  R  T  V  F  D  D  E  E  Q  R  R :   Q  E  L  M  R  E  R  E  K  H  K  Q  E  Q  V  E  T  L  K  R  E  M  Q  S  G  M  :  A  Q  A  M  K  E  Q  A  Q  L  R  E  E  M  A  Y  Q  Y  K  L  G  N  F  E  :  A  A  A  A  I  Q  R  R  L  D  P  D  L  P  M  *  T  R  F  C  K  I  L  V  Y  A  T  T  D  Y  I  R  L  H  V  L  V  F  L  S  P  F  R  *  V  N  M  L  A  D  S  S  A  S  L  S  L  L  L  D  I  T  R  L  D  E  L  K  S  S  S  C  I  V  V  *  Y  H  L  H  S  H  L  F  I  L  F  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28680" stop="28896"/>
                    <exon start="28965" stop="29064"/>
                    <exon start="30015" stop="30060"/>
                    <exon start="30307" stop="30356"/>
                    <exon start="30478" stop="30519"/>
                    <exon start="30757" stop="30870"/>
                    <exon start="31445" stop="31523"/>
                    <exon start="31624" stop="31695"/>
                    <exon start="31770" stop="31817"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENTAEREVEVLEEDRGMIMTIRILHHLEKIRIRTLKTRIRIQSRVVVRSIRIRKRRGGVERGEIGREERKRREKKERKKKKKEKGKTGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLPNWEEKQLFKQFMEDHNTATFPSKKYYNLDAYYRRKMEKESRRGVKKVVDDERTVFDDEEQRRQELMREREKHKQEQVETLKREMQSGMAQAMKEQAQLREEMAYQYKLGNFEAAAAIQRRLDPDLPM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28793" e_stop="29064"/>
            <exon e_start="30015" e_stop="30060"/>
            <exon e_start="30307" e_stop="30356"/>
            <exon e_start="30478" e_stop="30519"/>
            <exon e_start="30757" e_stop="30870"/>
            <exon e_start="31445" e_stop="31523"/>
            <exon e_start="31624" e_stop="31695"/>
            <exon e_start="31770" e_stop="32089"/>
            <exon e_start="32140" e_stop="32204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="0.949"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.495" acc_prob="0.938" e_score="0.960"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="0.976"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.982"/>
          <exon-intron don_prob="0.998" acc_prob="0.966" e_score="0.949"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.919"/>
          <exon-only e_score="0.831"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="28793" e_stop="29064" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29065" i_stop="30014" i_length="950"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30015" e_stop="30060" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30061" i_stop="30306" i_length="246"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="30307" e_stop="30356" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.495" acc_prob="0.938">
            <gDNA_intron_boundary i_start="30357" i_stop="30477" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="30478" e_stop="30519" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30520" i_stop="30756" i_length="237"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="30757" e_stop="30870" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30871" i_stop="31444" i_length="574"/>
          </intron>
          <exon e_serial="6" e_score="0.949">
            <gDNA_exon_boundary e_start="31445" e_stop="31523" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.966">
            <gDNA_intron_boundary i_start="31524" i_stop="31623" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31624" e_stop="31695" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31696" i_stop="31769" i_length="74"/>
          </intron>
          <exon e_serial="8" e_score="0.919">
            <gDNA_exon_boundary e_start="31770" e_stop="32089" e_length="320"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32090" i_stop="32139" i_length="50"/>
          </intron>
          <exon e_serial="9" e_score="0.831">
            <gDNA_exon_boundary e_start="32140" e_stop="32204" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28793" stop="29064"/>
              <exon start="30015" stop="30060"/>
              <exon start="30307" stop="30356"/>
              <exon start="30478" stop="30519"/>
              <exon start="30757" stop="30870"/>
              <exon start="31445" stop="31523"/>
              <exon start="31624" stop="31695"/>
              <exon start="31770" stop="32089"/>
              <exon start="32140" stop="32204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9068-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTCGGATTCAGAGTCGGGTAGTAGTTCGGAGTATTCGGATTCGGAAGAGGAGAGGAGGCGTAGAAAGAGGAGAGATAGGAAGAGAAGAGAGGAAAAGGAGAGAGAGAAGAAACGAAAGCTGAGGAAAGAGAAGGAGAAGGAGAAGAAGAAGAGGAGGAAGAAGGAGAAAGAGAAGAAAGAGAGGAAGAAGAAAAAGAAAGAGAAGGGGAAAACTGGTGCTGTTACAAACTCTTGGGGAAAATATGGAATCATCAAGGAAACTGATATGTG : GAACAAACGGCCAGAGTTTACCGCATGGTTGGCAGAAATAAAGAAG : GTGAATCTGGAAAGCCTGCCAAATTGGGAAGAGAAGCAATTGTTCAAGCA : ATTCATGGAGGATCATAACACTGCAACCTTCCCTTCTAAAAA : ATATTATAACCTTGACGCCTATTACAGACGTAAAATGGAAAAGGAAAGTAGAAGAGGTGTCAAGAAGGTCGTGGACGATGAACGTACTGTCTTCGATGATGAAGAACAGCGCAG : GCAAGAACTGATGCGAGAGCGTGAGAAGCACAAGCAAGAACAGGTGGAAACATTGAAGCGCGAGATGCAGAGTGGAATG : GCGCAAGCAATGAAAGAACAAGCTCAATTAAGAGAAGAGATGGCTTATCAATACAAGCTTGGTAACTTTGAG : GCTGCAGCTGCTATTCAAAGACGTTTGGACCCTGATCTCCCTATGTAGACGAGGTTCTGCAAAATTTTGGTCTACGCTACAACGGATTACATTAGACTACATGTTTTAGTTTTTCTGTCTCCTTTTCGTTGAGTAAATATGCTTGCAGATTCATCTGCAAGTCTAAGCTTATTACTAGATATCACTAGGCTAGATGAGTTGAAATCTAGTTCATGTATTGTTGTGTAATATCATTTGCACTCCCATCTTTTTATTCTCTTCGATCTCCACCTTATTGATGTTAATCCCTAGTAGCAAATTAACCTTGCATTAAGACTGAT : GTCGAATTCGTCCTATAAAAAGTTGCCTGTTTAACCTTTTGAAAAATTGAATTTGACGGATTAGA</gDNA_template>
            <first_frame> Y  S  D  S  E  S  G  S  S  S  E  Y  S  D  S  E  E  E  R  R  R  R  K  R  R  D  R  K  R  R  E  E  K  E  R  E  K  K  R  K  L  R  K  E  K  E  K  E  K  K  K  R  R  K  K  E  K  E  K  K  E  R  K  K  K  K  K  E  K  G  K  T  G  A  V  T  N  S  W  G  K  Y  G  I  I  K  E  T  D  M  W :   N  K  R  P  E  F  T  A  W  L  A  E  I  K  K  :  V  N  L  E  S  L  P  N  W  E  E  K  Q  L  F  K  Q :   F  M  E  D  H  N  T  A  T  F  P  S  K  K :   Y  Y  N  L  D  A  Y  Y  R  R  K  M  E  K  E  S  R  R  G  V  K  K  V  V  D  D  E  R  T  V  F  D  D  E  E  Q  R  R :   Q  E  L  M  R  E  R  E  K  H  K  Q  E  Q  V  E  T  L  K  R  E  M  Q  S  G  M  :  A  Q  A  M  K  E  Q  A  Q  L  R  E  E  M  A  Y  Q  Y  K  L  G  N  F  E  :  A  A  A  A  I  Q  R  R  L  D  P  D  L  P  M  *  T  R  F  C  K  I  L  V  Y  A  T  T  D  Y  I  R  L  H  V  L  V  F  L  S  P  F  R  *  V  N  M  L  A  D  S  S  A  S  L  S  L  L  L  D  I  T  R  L  D  E  L  K  S  S  S  C  I  V  V  *  Y  H  L  H  S  H  L  F  I  L  F  D  L  H  L  I  D  V  N  P  *  *  Q  I  N  L  A  L  R  L  M :   S  N  S  S  Y  K  K  L  P  V  *  P  F  E  K  L  N  L  T  D  *  </first_frame>
            <second_frame>  I  R  I  Q  S  R  V  V  V  R  S  I  R  I  R  K  R  R  G  G  V  E  R  G  E  I  G  R  E  E  R  K  R  R  E  R  R  N  E  S  *  G  K  R  R  R  R  R  R  R  R  G  G  R  R  R  K  R  R  K  R  G  R  R  K  R  K  R  R  G  K  L  V  L  L  Q  T  L  G  E  N  M  E  S  S  R  K  L  I  C   : G  T  N  G  Q  S  L  P  H  G  W  Q  K  *  R  R :   *  I  W  K  A  C  Q  I  G  K  R  S  N  C  S  S   : N  S  W  R  I  I  T  L  Q  P  S  L  L  K   : N  I  I  T  L  T  P  I  T  D  V  K  W  K  R  K  V  E  E  V  S  R  R  S  W  T  M  N  V  L  S  S  M  M  K  N  S  A   : G  K  N  *  C  E  S  V  R  S  T  S  K  N  R  W  K  H  *  S  A  R  C  R  V  E  W :   R  K  Q  *  K  N  K  L  N  *  E  K  R  W  L  I  N  T  S  L  V  T  L  R :   L  Q  L  L  F  K  D  V  W  T  L  I  S  L  C  R  R  G  S  A  K  F  W  S  T  L  Q  R  I  T  L  D  Y  M  F  *  F  F  C  L  L  F  V  E  *  I  C  L  Q  I  H  L  Q  V  *  A  Y  Y  *  I  S  L  G  *  M  S  *  N  L  V  H  V  L  L  C  N  I  I  C  T  P  I  F  L  F  S  S  I  S  T  L  L  M  L  I  P  S  S  K  L  T  L  H  *  D  *   : C  R  I  R  P  I  K  S  C  L  F  N  L  L  K  N  *  I  *  R  I  R </second_frame>
            <third_frame>   F  G  F  R  V  G  *  *  F  G  V  F  G  F  G  R  G  E  E  A  *  K  E  E  R  *  E  E  K  R  G  K  G  E  R  E  E  T  K  A  E  E  R  E  G  E  G  E  E  E  E  E  E  E  G  E  R  E  E  R  E  E  E  E  K  E  R  E  G  E  N  W  C  C  Y  K  L  L  G  K  I  W  N  H  Q  G  N  *  Y  V  :  E  Q  T  A  R  V  Y  R  M  V  G  R  N  K  E   : G  E  S  G  K  P  A  K  L  G  R  E  A  I  V  Q  A  :  I  H  G  G  S  *  H  C  N  L  P  F  *  K  :  I  L  *  P  *  R  L  L  Q  T  *  N  G  K  G  K  *  K  R  C  Q  E  G  R  G  R  *  T  Y  C  L  R  *  *  R  T  A  Q  :  A  R  T  D  A  R  A  *  E  A  Q  A  R  T  G  G  N  I  E  A  R  D  A  E  W  N   : G  A  S  N  E  R  T  S  S  I  K  R  R  D  G  L  S  I  Q  A  W  *  L  *   : G  C  S  C  Y  S  K  T  F  G  P  *  S  P  Y  V  D  E  V  L  Q  N  F  G  L  R  Y  N  G  L  H  *  T  T  C  F  S  F  S  V  S  F  S  L  S  K  Y  A  C  R  F  I  C  K  S  K  L  I  T  R  Y  H  *  A  R  *  V  E  I  *  F  M  Y  C  C  V  I  S  F  A  L  P  S  F  Y  S  L  R  S  P  P  Y  *  C  *  S  L  V  A  N  *  P  C  I  K  T  D  :  V  E  F  V  L  *  K  V  A  C  L  T  F  *  K  I  E  F  D  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28793" stop="29064"/>
                    <exon start="30015" stop="30060"/>
                    <exon start="30307" stop="30356"/>
                    <exon start="30478" stop="30519"/>
                    <exon start="30757" stop="30870"/>
                    <exon start="31445" stop="31523"/>
                    <exon start="31624" stop="31695"/>
                    <exon start="31770" stop="31817"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSDSESGSSSEYSDSEEERRRRKRRDRKRREEKEREKKRKLRKEKEKEKKKRRKKEKEKKERKKKKKEKGKTGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLPNWEEKQLFKQFMEDHNTATFPSKKYYNLDAYYRRKMEKESRRGVKKVVDDERTVFDDEEQRRQELMREREKHKQEQVETLKREMQSGMAQAMKEQAQLREEMAYQYKLGNFEAAAAIQRRLDPDLPM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="59680" PGL_stop="61183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59680" e_stop="59801"/>
            <exon e_start="60145" e_stop="60240"/>
            <exon e_start="60740" e_stop="61183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.970" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59680" e_stop="59801" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="59802" i_stop="60144" i_length="343"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="60145" e_stop="60240" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.970">
            <gDNA_intron_boundary i_start="60241" i_stop="60739" i_length="499"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60740" e_stop="61183" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59680" stop="59801"/>
              <exon start="60145" stop="60240"/>
              <exon start="60740" stop="61183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1758" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG : GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG : AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCAT</gDNA_template>
            <first_frame> K  N  H  F  L  K  S  P  S  Y  N  F  F  K  T  K  I  I  F  L  I  *  S  W  L  F  K  L  L  H  C  F  L  L  L  S  L  F  Q  R  R :   G  K  L  V  H  L  *  R  I  R  V  S  L  E  F  L  S  L  T  M  L  N  L  I  L  A  L  H  S  K  S  R :   A  E  E  S  H  P  S  E  L  L  E  P  R  Q  W  L  H  L  P  V  *  R  V  P  L  *  Q  E  R  K  P  *  E  K  V  V  *  *  S  L  E  R  L  Q  D  *  D  *  L  Q  Q  K  L  W  L  R  Q  G  N  G  M  *  L  W  H  V  E  T  F  L  K  L  K  E  Q  Q  N  Q  Q  G  C  L  R  R  I  I  Q  *  C  I  *  T  L  H  R  L  T  A  S  D  N  L  S  I  T  L  G  D  Q  A  I  L  L  M  Y  W  F  A  M  Q  L  F  I  S  L  P  R  K  S  L  R  L  Q  L  K  D  L  S  L  V  L  G  L  T  I  L  V   </first_frame>
            <second_frame>  K  I  I  F  *  N  L  H  L  T  I  F  S  K  Q  K  S  F  S  *  Y  N  H  G  S  S  S  C  C  I  A  S  F  Y  F  L  Y  S  K  G   : G  E  N  *  C  I  F  E  G  F  E  S  L  W  N  F  S  L  *  P  C  *  I  *  F  W  L  F  I  Q  N  Q   : E  R  K  K  V  I  P  R  S  Y  *  S  R  D  N  G  C  I  S  R  C  N  E  Y  P  C  D  R  K  E  N  L  K  K  R  L  C  S  N  H  W  S  V  F  R  T  R  T  S  Y  S  K  S  S  G  *  D  R  E  M  A  C  N  Y  G  M  *  R  L  S  *  S  *  K  S  S  K  I  S  R  D  A  *  G  E  L  Y  N  N  A  F  R  P  C  I  A  *  Q  R  Q  T  I  C  R  *  L  *  E  I  R  Q  S  S  *  C  I  G  L  Q  C  S  C  L  S  A  Y  R  E  R  A  F  V  Y  S  *  R  I  *  A  *  C  W  D  *  P  S  W  S  </second_frame>
            <third_frame>   K  S  F  F  K  I  S  I  L  Q  F  F  Q  N  K  N  H  F  P  N  I  I  M  A  L  Q  A  A  A  L  L  P  S  T  F  S  I  P  K  E  :  G  K  T  S  A  S  L  K  D  S  S  L  F  G  I  S  L  S  D  H  V  K  S  D  F  G  S  S  F  K  I  K  :  S  G  R  K  S  S  L  G  A  I  R  A  E  T  M  V  A  S  P  G  V  T  S  T  P  V  T  G  K  K  T  L  R  K  G  C  V  V  I  T  G  A  S  S  G  L  G  L  A  T  A  K  A  L  A  E  T  G  K  W  H  V  I  M  A  C  R  D  F  L  K  A  E  R  A  A  K  S  A  G  M  P  K  E  N  Y  T  I  M  H  L  D  L  A  S  L  D  S  V  R  Q  F  V  D  N  F  R  R  S  G  N  P  L  D  V  L  V  C  N  A  A  V  Y  Q  P  T  A  K  E  P  S  F  T  A  E  G  F  E  L  S  V  G  T  N  H  L  G  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59682" stop="59801"/>
                    <exon start="60145" stop="60240"/>
                    <exon start="60740" stop="61183"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSFFKISILQFFQNKNHFPNIIMALQAAALLPSTFSIPKEGKTSASLKDSSLFGISLSDHVKSDFGSSFKIKSGRKSSLGAIRAETMVASPGVTSTPVTGKKTLRKGCVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGMPKENYTIMHLDLASLDSVRQFVDNFRRSGNPLDVLVCNAAVYQPTAKEPSFTAEGFELSVGTNHLGH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="65008" PGL_stop="63808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65008" e_stop="64766"/>
            <exon e_start="64020" e_stop="63808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.367" e_score="0.992"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="65008" e_stop="64766" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.367">
            <gDNA_intron_boundary i_start="64765" i_stop="64021" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="64020" e_stop="63808" e_length="213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65008" stop="64766"/>
              <exon start="64020" stop="63808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1721" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG : GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGA</gDNA_template>
            <first_frame> I  L  K  L  K  K  T  K  K  K  T  N  D  V  G  Y  I  S  Q  G  I  C  S  S  S  *  R  I  K  *  S  C  I  K  K  M  F  T  S  T  T  N  A  T  K  I  R  I  D  S  S  I  *  H  L  L  C  Y  F  W  R  C  C  C  S  C  F  C  S  S  *  L  H  L  L  A  Q  S  Q  T  K  :  V  F  L  W  L  *  *  Y  L  L  F  V  H  G  E  F  E  Q  F  V  C  T  N  Q  T  I  W  A  I  T  K  R  Y  K  *  S  H  A  S  H  *  S  L  Q  D  T  *  R  Q  G  T  L  S  S  *  S  S  Y  *  G  F  *  R  K  F  C  F  C  Y  L  * </first_frame>
            <second_frame>  S  *  S  *  K  K  Q  K  K  K  Q  T  M  L  A  I  F  H  K  A  F  A  H  P  P  E  E  L  N  S  P  A  S  K  K  C  L  L  P  Q  Q  T  L  Q  K  F  V  S  T  R  P  F  D  T  S  Y  V  T  F  G  D  V  A  A  L  A  F  V  R  P  N  C  T  S  L  L  N  H  K  Q  R :   Y  F  C  G  Y  D  D  I  Y  C  L  F  M  G  S  L  N  N  L  C  A  Q  I  K  Q  Y  G  L  S  P  K  G  T  N  E  A  M  L  V  I  E  A  Y  R  T  L  R  D  R  G  P  Y  P  A  D  Q  V  I  K  D  F  E  G  S  F  A  F  V  I  Y   </second_frame>
            <third_frame>   L  E  A  K  K  N  K  K  K  N  K  R  C  W  L  Y  F  T  R  H  L  L  I  L  L  K  N  *  I  V  L  H  Q  K  N  V  Y  F  H  N  K  R  Y  K  N  S  Y  R  L  V  H  L  T  P  L  M  L  L  L  E  M  L  L  L  L  L  L  F  V  L  I  A  P  P  C  S  I  T  N  K   : G  I  F  V  V  M  M  I  F  T  V  C  S  W  G  V  *  T  I  C  V  H  K  S  N  N  M  G  Y  H  Q  K  V  Q  M  K  P  C  *  S  L  K  P  T  G  H  L  E  T  G  D  L  I  Q  L  I  K  L  L  R  I  L  K  E  V  L  L  L  L  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0123M18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64995" stop="64766"/>
                    <exon start="64020" stop="63810"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKQKKKQTMLAIFHKAFAHPPEELNSPASKKCLLPQQTLQKFVSTRPFDTSYVTFGDVAALAFVRPNCTSLLNHKQRYFCGYDDIYCLFMGSLNNLCAQIKQYGLSPKGTNEAMLVIEAYRTLRDRGPYPADQVIKDFEGSFAFVIY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 5 chains have been computed
$ 
$ memory statistics:
$ 8608 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2152 bytes was the average size of a spliced alignment
$ 8576 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2858 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 7 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 08:34:59
-->
