<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:20:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U574651" ref_strand="+" ref_description="SGN-U574651 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|76160935|gb|ABA40431.1| (e_value=1e-28) unknown [Solanum tuberosum]; (*ATH) AT5G25280.2 (e_value=7e-20) | Symbol: None | serine-rich protein-related, contains some similarity to serine-rich proteins | chr5:8773795-8776003 FORWARD | Aliases: None; ">
      <seq>gctgccaatacgcggcactaagaaatactctccaatcttcttcttcttctctctcaactgtaaaacaacaaaaaatggcggcttctgcacggcgatcaaccggaccggtgctccgttcattatctcccgccggcagattttactcatcgtcatctagaacttcgtcgtcttctgcttcatcgatccggtttacactggaccgtgaaacttccccaagccggtctatttccgtaatgaaccggcagaaaacactggcttcttctcagaagaagaggtgtatgtgttcgccgacgaatcatccaggttcgttccgttgtagtatgcataagaaaatggatattcgacggagtagtagtactagccaaacggcgtcgaattcgattcgattgcatatgaggcgatcggcgatgacgaattcgttagtgcgaatcggaactgttgaaggtgagcttgttaaaagagctttagcggctttgattcgtccttcttcgcatcaacagcgtcgccgttccgatttccaacgccgacctagtcgactttccgttatttccagttccggtgactcataagtcagttattctttctctagaaatttcattcaacaacgcgtgctgcgccgattcttagcgcagatctggccggatctccattgtttccggtgccggtgatacgtaggacgtgaatagagctgttagaagtttgcttttctgttgaatgctgacctcagcaatcgatgtctggccgtgaagtaacgtcagctgcaacgaggtggcggcggcgaactggagtgtacacggtggaggtcggaacggaacaacttttttgtgtactccggtgaccaaaacgttaggatccatatgtctaatagtctaaaatacatgaagaaaattataaaatcattcagttctcctaaaagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="9421" stop="7911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9122" g_stop="8205" g_length="918"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="919" r_length="919" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-U574651" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>918</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U574651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9122" e_stop="8205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCAA-ACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAATTATGA</genome_strand>
        <mrna_strand>GCTGCCAATACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAAAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U588347" ref_strand="+" ref_description="SGN-U588347 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aggagaactgggtgattttataattttcttcatgtattttagactattagacttatggatcctaacgttttggtccccggagtacacaaaaaagttgttccgttccgacctccaccgggtacactccagttcgccgccgccacctcgttgcagctgacgttacttcacggccagacatccattgcggaggtcagcattcgacagaaaagcaaacttctaacagctctattcacgtccaacgtatcaccggcaccggaaacaatggagatccggccagatctgcgctaaaaatcggcgcagcacgcgttgttgaatgaaatttctagagaaagaataactgacttatgagtcaccggaactggaaataacggaaagtcgactaggtcggcgttggaaatccaaacggcgacgctgttgatgcgaaaaaggacaaatcaaagggggggggggggggggtaacaagctcaccttcaacagttccgattcgcactaacgaattcgtcatcgccgatcgcctcatatgcaattgaatcggaattcgaccccttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="7913" stop="9061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8213" g_stop="8761" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-U588347" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8213" e_stop="8761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGAACTGAATGATTTTATAATTTTCTTCATGTATTTTAGACTATTAGACATATGGATCCTAACGTTTTGGTCACCGGAGTACACAAAAAAGTTGTTCCGTTCCGACCTCCACCGTGTACACTCCAGTTCGCCGCCGCCACCTCGTTGCAGCTGACGTTACTTCACGGCCAGACATCGATTGCTGAGGTCAGCATTCAACAGAAAAGCAAACTTCTAACAGCTCTATTCACGTCCTACGTATCACCGGCACCGGAAACAATGGAGATCCGGCCAGATCTGCGCTAAGAATCGGCGCAGCACGCGTTGTTGAATGAAATTTCTAGAGAAAGAATAACTGACTTATGAGTCACCGGAACTGGAAATAACGGAAAGTCGACTAGGTCGGCGTTGGAAATCGGAACGGCGACGCTGTTGATGCGAAGAAGGACGAATCAAA-GCCGCTAAAGCTCTTTTAACAAGCTCACCTTCAACAGTTCCGATTCGCACTAACGAATTCGTCATCGCCGATCGCCTCATATGCAATCGAATC-GAATTCGACGCCGTTTG</genome_strand>
        <mrna_strand>AGGAGAACTGGGTGATTTTATAATTTTCTTCATGTATTTTAGACTATTAGACTTATGGATCCTAACGTTTTGGTCCCCGGAGTACACAAAAAAGTTGTTCCGTTCCGACCTCCACCGGGTACACTCCAGTTCGCCGCCGCCACCTCGTTGCAGCTGACGTTACTTCACGGCCAGACATCCATTGCGGAGGTCAGCATTCGACAGAAAAGCAAACTTCTAACAGCTCTATTCACGTCCAACGTATCACCGGCACCGGAAACAATGGAGATCCGGCCAGATCTGCGCTAAAAATCGGCGCAGCACGCGTTGTTGAATGAAATTTCTAGAGAAAGAATAACTGACTTATGAGTCACCGGAACTGGAAATAACGGAAAGTCGACTAGGTCGGCGTTGGAAATCCAAACGGCGACGCTGTTGATGCGAAAAAGGACAAATCAAAGGGGGGGGGGGGGGGGGTAACAAGCTCACCTTCAACAGTTCCGATTCGCACTAACGAATTCGTCATCGCCGATCGCCTCATATGCAATTGAATCGGAATTCGACCCCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U566359" ref_strand="+" ref_description="SGN-U566359 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|29170386|gb|AAO65974.1| (e_value=4e-111) putative vacuolar ATPase subunit H protein [Suaeda maritima subsp. salsa]; (*ATH) AT3G42050.1 (e_value=2e-105)  Symbol: None | vacuolar ATP synthase subunit H family protein, identical to probable vacuolar ATP synthase subunit H (EC 3.6.3.14)(V-ATPase H subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) SP:Q9LX65 from (Arabidopsis th... ; (*SWP) sp|Q84ZC0|VATH_ORYSJ (e_value=1e-104) Probable vacuolar proton pump subunit H OS=Oryza sativa subsp. japonica GN=Os07g0549700; ">
      <seq>ggttggctctttcagatttcaactcccatctgtggcacctctgttcatcaccatcttcatatggttgaaggaaacaacagattctgaattttcttgtttcattagaggatatcagattttcagatcggaagaatataatcacaatgacaattgaaaacggtgagctcaccaccgagcaggttttgaggagggatattccatgggagacttacatgaccacgaagctgatcagtggaacagatcttcagctgttgaggcgttatgataaaatggctgaaagctacaaatctcagttgctggataatgacggtccagcttatatccgtgtttttgttactactttacgagatatcttcaaggacgaaaccgtggaatatgttttagctttaattgatgaaatgcttacagcaaacccaagaagagcgagattattccatgatagctctttatccaatgaagacacttatgaacctttcctcagatttctttggaaaggtaattggttcatccaagagaagagctgtaagattctctctttgatagtgagtgccaggccaaatgttcagaatgttgctgatgcaaatggagatgcctcgagttcaaagaggacactcaccactatggaaaatattctgaatggcctagtagattggctatgctcacagctgagaaagccttctcatcctagttgtagcattccctctgcaatcaattgtcttgcaacactgttgaaggagcctgttgttcgacgttcatttgttcaatctgatggagtgaagctgctcattcctttaatttcaccagcatctactcagcagtccattcagcttctctacgagacatgtctatgcgtttggcttctgtcttactatgaacctgcaattgagtacttggctacttctagggccctacctcgattgattgaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="16504" stop="23103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16804" g_stop="16866" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16867" i_stop="18223" i_length="1357">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18224" g_stop="18339" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="179" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18340" i_stop="18995" i_length="656">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18996" g_stop="19121" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="305" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19122" i_stop="19739" i_length="618">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19740" g_stop="19842" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="408" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19843" i_stop="20085" i_length="243">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20086" g_stop="20158" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="481" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20159" i_stop="20987" i_length="829">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20988" g_stop="21053" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="547" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21054" i_stop="21161" i_length="108">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21162" g_stop="21279" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="665" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21280" i_stop="21983" i_length="704">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21984" g_stop="22145" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="827" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="22146" i_stop="22700" i_length="555">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="22701" g_stop="22803" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="828" r_stop="930" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-U566359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>930</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16804" e_stop="16866"/>
          <exon e_start="18224" e_stop="18339"/>
          <exon e_start="18996" e_stop="19121"/>
          <exon e_start="19740" e_stop="19842"/>
          <exon e_start="20086" e_stop="20158"/>
          <exon e_start="20988" e_stop="21053"/>
          <exon e_start="21162" e_stop="21279"/>
          <exon e_start="21984" e_stop="22145"/>
          <exon e_start="22701" e_stop="22803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGCTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATGGTATTTTTATTTGTATTTATTTATTTTTGTTTAATTAATATCTTATGAAATTTATGTCAATTTCAGTTAATTCATTGGATTATAGTATTGTTTTTTTTTTTTTGGTTGAGTGGAATGTGGAATGTGAAATGTGAAATGTCAAATCTTGGGTTATAAAGGTTGAATCTTGAAAAAAAAACAGAAAAAAGGTTGAGTCTTTTTCATTTTTGTGATGAGGGGAATGAGAATTGCTAATTTTGGGTTTTAATGAATGTGATAAAGATTGAGTCTTGAAGTTTGAAAAGAAAAAAAGTTTGTCTTTTTTGTTTTTATTTTTGGTGCTTGAGAGGACTGTGAAATGCTAATTCTGGGTTTGAATGAGTGTTTAATATGAATCACATATTGCTTTGCTTTTCTGGTTCTAATTTGTTTATGATAGGTAGTTTGAATTTGTGAGCTTGAATTGTAGGGATTGTTTGAAATGGGGGTGAAATCTGAATCCAAGGAAAAAAGATTGTGAGGTCAACTTTTGATTTGCTAACTTCTCATTGCTTTATGTGTTCGAATTTCGGTTAATTGACTTGATGATAGTGTTTGGTTCTTTGATTTTTGGATGAGAGCAATGTAAAATGATAATTCTTAGTTTTAAAGGTTGAGTTTTGAATTTCGAAAAAGAAAAAGTTGAGTCTTTTCTTTTTTCTTCTTTGTTTTATGGGATGAGAGGAATGAAAAATGATAATTCTAGGAGTGTTAAGTTTGACTTAAAAAACCCGAAAAGGCTGTGTCTTTCTTTGTTGTGCATGAGGGGTAATGCAAGGCTGGGTTGAAAAAAAATGAACTTGATAGAAATTGGGCGTATTGCTTCATGAGTAAAATACTTTGCTTTTGTGGATCAATTATTAAATTATAATCTGTTGGAATTAGTGAGCTCGGATTGGGCTGATCGTGTTGCCGAGGGTCTATTGGAGACAACCTCTCTACCTCATAAAGGTAGGGGTAAGGTACCAGACCTCACTGGTGGGATTACAATGGATATGTTATTGGATTGTGCTAATCGTTGAGATTTCAAGGTCAACTTTTGATCTGCCAACTTCTCATTGCGTTATGTCCCACTTTATATGCCTATTGTTTCTCTGATAGTCATTTGCTTGTGACACTTCTCTTGAAATGATATAATTCTTCTGTAAACATCTGGTTATTTCGTTTCTACACAATTCTCTTCTTTTTTTTTCATTTCTTTTTGTTGTGTTTTGCAAAATTAAATTCACTCAGTTTGTGAGTGACATTTGATGATCCTGTTTTTAGGTGAATCTGCTTACAATGTAGGACTTAATTATCTGTCAGCGTTTTGAAATATATATACGTGGACTCTATACAGGTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAGGTAATTTCTCACATGAATAAGCATCATCACGAATCTACAGTTATGTACTAATATGTAGATTTCTACGTAATGAACATCTAGGTCTATGGCTGTTAGTTACTTTCTTTTTCATCCATTGATCTTCTTCTTCTTCTTCAAAGGCTATAATAGCTTGTCTGTGTAAATAAAAGAAACAATAAATGGACGACCAGAACACAAGGTTTATGACTATTAGTTGCCTTTGTAGTAGAGCATTATTTGACATAGAGAAGTTCTCTATTCTCATGATTGAAAATCGTAGTTACTCTTTCTATTTCTTACCATCGAGGAGATTCATCCTAGATTATTCCAGCAAATAGCAGAATCGTGGCTAGGGAACTAAACTAGTGATCTATCCAATTTATTGTAGAAATTTTCGCGATCAATGATTGTACCATGCAAACTAGAAATGTTTTTTCTTGGCTAAAGAAAGATATTACTTTGATCTATTTCCATGTCGCTCATGATATGTATCAACAGCCACACATCCAGCAAGTGCGTATCCCACTTTTGTACAGTAGGGGGTATGGATATCCACGAGAAGGGTTGGGTGGTGGAAAAAAGGAAACTGCAATTAGTAGTGTGATCATCTGTGTCTCTTACTGCACAGCTCATATTGTGTGCTTTGCTCTTTAAAGGTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAATGTAATGTTTTCTGTGTTCTTATTTAGCTATGATTTACATGTTAGCTGCTCCACAATTCCGGCTCATGCATCTTACTTTCATGTTCACCGAAACTTTTCTGCCTAATCTTTCTTTTATTTAGTTGGATTTTTCTTCTAAATTCTATCTGGAGAAGGTCTAGTAATATGGTGTTTGCTTTTTATGTCATGGGAAAAATGAAGAAAAATAAAAATTCTCTTCAATCGATATTGTTCATATATTACAATTACTAATCTTATCTTTACTAATCCGTGGTGGCAGACGTCGAAGTCCTGCCTCTTTTTGTTTTGGCTCTGATTCTGTGTCCTCCTTATGTGTGGGTCGGGTGTTAATCTATCAAAAGTTATTCATTAATAAAAAAAGGGGTTGTCCGTATAGTTTCAGTTATCAGTTGATGATGATGTTTGTTTTCAAGTTTTTTGTAAGCTACATGTAATATGCTTGTGGGGGAACGTACGTAATGGTGTTTCCAACAGATGAATTAAAGAAATACCTATTTTTACTTCAGTTTTGGTTTCTTTTTCAATCTTCTATCGTCCTTGATGTTCCAGAATGGTCTTTAGTTTTACTACATTGATAAACTGGAAGCATTTTTTGCAGGACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAGGTAACTGGGGATGAATCTTTCACTGCAAAAGAAAAGAAGTATTATCAACGGACAACTTTTGTCACTAAACAACAAAAAATCGTTGCTAATCCTAAATAACGACGGATTAGTGGGGGATAATCAAAAAAATCGTGTTAGCTATGGGCTATTTAACAACATATTAGCCATGCTGATTCATGTTTTCTTTTACTGTTTTATGATCTATTTTGATAGATCCACCAATCTATACTCTTGTTCTTGCAGCAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAGGTGCTTCTATTAAGTATTTATTCGAACTTTTAGTCTGTTGTTGTCTTCATGAATTCACATGTGTTTTTTTAATAATCGTGGTGTTTGGCCCATCTGGTGTGTACCTTGACTAATTCCACGGAATACTTGCCAAGTCCCACCAGCAACAAATGCCAAGTTGGCTATAACAGATGGGAGAAAATCAACTCGTGTTTTGTTTCTTGCTTCTGTTGGAATTTGAACCTGAGACCTCGTATATTCACGTGTGTTGATTTATGGATTTTCCTATATCTATACATTTATATGGTTTCACACTTATCCACTAGAACTGCTTCCCTTTTTAAAAATCCGGTCAACACTTGATCTTTTGTATTTTTAAATTTTCGTTAATTTGGTAAATTTAATTGATGGACAAACTGATCTATAGTCCTTTAGGATTTTAATCCCTGCATCTATTTAAGTGGTAAGTTTCATAATCAAGACTTTCTGAACTATGCCAAATATTAGGAGGCAACATTGGAGTAAAAACAAAATCGACAACCCTACGGTGCTTCGATTAATTATATATGCATATGTATGCTAGATTGATTTTACTCCTGAAACTAAACAGTGGGTTCATATGTCATTTGGCTCTAACGGAGCAAATGTTGAAAAAGGAAAATCCAAAATCCAAATGCACATGTAGATAGCTCAACAGGAAAATGAGACTTGTGTGTTTCTTTTGAAATTCACCGTTTTTCCTATATGCAGTCTCTTTTTTTCGATAATATCTTTTAAATACAGAAGATTGTATGTTTTCTTGCATCTTCACATTCTTTCTCTTTCTGAATGATGACTTCATTTCTTTCAGATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAGGTAGTAAAGTCATTATTCCTATGATGTCATTCAGCTCGAGAGACTTAAGATTAGGACGATTTACTGATAACTTCCATATGGTTCTTCGATTCTTTTTGGTAATTCCAGTGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAGGTTCATCTGCATTCCTATATTTTGCACTTCTACTTTGTACCTCCATTTGTGGTCCCCCAACCCCCCACCTCTAGAAAAGATTTTTTTTAACCAATTCGTGAGGTGTTTTTTCTAGAGATTTTAAGGGAATTTGCAATGGTTTATGGAGGTATTGAATTTCTGCAGGAGTACTTATTAATCTCTTTGCTCTTTCAAATTGTGGCGTCTCTCTCTGTTGGCACAATACATAAACAAACACTCAAACTTGGCTGTAACTGACAAGTAAGAACTTCCATTATGAGTATGCACATCTAGACACTTCAACTCATCCTCACTATGTCAGTTGAACGCTCCAACTTACTAATAATCATGTAGACACCTCTAAAGTTTATGTGCCACGTCAGCATCGGGTGTCCATGAGACAGTGGGACAACTGAGTGTCTAGTTGCCATTTGAGACCAAGTTGAGGTGTCTAGATGTGCGCTCTCATTGTTGGAGTGCTTATTTGCCAACTGAGGCCAAGTTTGAGTGTCTGCTTATGTACTATGCCCTCTCTTTTTGCTTGTTGTAGTATTCTTTCTTAATTTAAGTCTTTAAAGTGACGGGAAAAAGGAGGGGCATATTTGTGATGTCAGGGGTTTATTTTCACTTGTTGCTAGAAGCATAAAATTATATGACAATTACTTGTTACTGTTGTCCATCCTGATTCCTCTGTATCATTTCAGCTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAGGTCCGTCTTTAGACTAGTACTGCCACATGATAGACCAACTTCATAAATTCTGTAGTCGTGCTGGGAAGTGACTGTTAAGATGGTTGTCATTTCACTCCATGTATCATGCAGCTCATAATTGTTGACAAAAATTTTCATGCTTCCATCTTTGACCCGTTTTCCATACATGGCCTAATTACAACAATATACTTAGTATAATCTCACTAGTGGGGTCTGGGGAGAGTAGAGTGTACGCAGACTGTACCCTACCTTGGGAGGTAGAGAGGTCGACTCTCGACTCAAGGAAAGCATACCAAAGCAGATCGAAAAAGAAATAATGGAAGTGAATAAATCATGGCAAAATACTACAGAGAGCGTGACAAAGCATTCTGGAAAAAAGGAACAGTATCTGCAACATAATAGTGCGATAATTGAAGTTTAAGCGGCAGTAGATAATAGAAGAAATAGAAGGACGAGAAGCTACACATAGGCCAAATTACAACCTTCTTTTAAGTAAAACGGTTTCTCTGCAATTTTAACAATGATGTATCTGATTCACTGTCTTCTTTGAAGCAGCTTCTCTACGAGACATGTCTATGCGTTTGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTG</genome_strand>
        <mrna_strand>GGTTGGCTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG...................................................................................................................................................................................................................................................CAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG............................................................................................................TGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTACGAGACATGTCTATGCGTTTGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U564536" ref_strand="+" ref_description="SGN-U564536 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157348728|emb|CAO23620.1| (e_value=7e-52) unnamed; (*ATH) AT2G29730.1 (e_value=3e-32) | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr2:12710614-12712258 FORWARD | Aliases: T27A16.17, T27A16_17; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=2e-51) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1; ">
      <seq>gcgtttaggacaacttcattctcttcttcctggctatgttcaccttgcaaagagaacaaatattttcagtagtagagattgaactgcactcatgcctctcgcgcatcaagttgaccgttccgccttacgtaagcaatgccattcagccattaacttcttctttacattcattgtgtttgtaccaaatgcaggccattgtagagttcagaatcagtgattcaagtgtgaaagtctcggcaggtgtttcctggtatgcctcacaaatctacttgttttgaacaatgaacaatatgtttcattttgtgtcttacgtgtattatgtcatataggatacgcgtgtctatttgttcaattttaaacaagtttaactgcttactaatgcacactcaaagttggagcgcatagttatctgctgaaccaagttaaggatcatgtttatgtattatgtctgtttttttcgtaagaatcaaataggttaagttgctcggactctctaatgatgcaacacttgtattagatcctccgaaaattcactacttttggaagatccaacacacaattgtcgagatctttgaagactttgagcaacatagcaacaacgttttcgatatacaaacttcaacggctgcaggagcacgctttctattagacaaataaccttggtcgacatagagacgtgacagaactatctctttacgcctcttctcattaaggaataacgacttggatgtgaaatgggttttggaggtcagagtaaaacgtatattcaatctttgagaggtagttagaagccgtttccaatagaccctttggctcaaggaaaatggaaatattaacctcactatcttcatcaagtttccattagcaatcaaatcaatagaagatagggcaacaaagaaggattgaaaatgtctctcaatagattgaaatgactttcaataattttattaagcgttgaaggacttacaatagacatcataaacacataatttgaaatttaaaacaatcttaaatatcaaacttattttgctaaaaattactattgcataacaacgtaactaaaagcaaacttcaacggtgaagttattcaattatatgtgatatgaatgattccatggcctcgcgtgcaagtcctccgtggctaacagagtttttgatctttttgctcaattccattgccgtttgcctcatttcttccccttctatggtactcgtcaatgtctcgatagatttctctatggttgatgcttttaccaattcatcgcggtgagaccaacacttgacagtgattccaatctccaacaaattagttacaagtatagcgttaaatggctgatcgaaactgattggcctagtagctataggtactcccatgttaatgctctcgatacatgaattccatccacagtgactcataaacccccctgtcgatgaatgtcccaagaattctaattgtgttgcccaattaaccattattcctcttccttccactcttacttcaaacccttcgggtaattcaatctttacgactttatctttaagtttctccgcgttatctccttttcttagtacccaaataaatctacggttgctctgttctaaacccagagcaatctcattgacttgctcttgtgataacgtagtcgttgatccagatgagatgagtatcaccgagttaacatcttgtttgattcgagaaattctaggcattgatcataacgcagagtgatgttgcttgatcgcgatcatttttttgcgttggagatgaaggtctcaacaggttatcgaaatagatgtttgaagctcttacatcaccttgaacgcgaagtttcaaatattcgttaacattagcaaaacagaggaaatgtacttgtaatttcatttttaactgagatcgccctatgatgagaaatatatatatatttttatttgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="46797" stop="44267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46503" g_stop="44567" g_length="1937"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1937" r_length="1937" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-U564536" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1937</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46503" e_stop="44567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCAAGGACAACTTCATTCTCTTCTTCCTGGCTATGTTCACCTTGCAAAGAGAACAAATATTTTCAGTAGTAGAGATTGAACTGCACTCATGCCTCTCGCGCATCAAGTTGACCGTTCCGCCTTACGTAAGCAATGCCATTCAGCCATTAACTTCTTCTTTACATTCATTGTGTTTGTACCAAATGCAGGCCATTGTAGAGTTCAGAATCAGTGATTCAAGTGTGAAAGTCTCGGCAGGTGTTTCCTGGTATGCCTCACAAATCTACTTGTTTTGAACAATGAACAATATGTTTCATTTTGTGTCTTACGTGTATTATGTCATATAGGATACGCGTGTCTATTTGTTCAATTTTAAACAAGTTTAACTGCTTACTAATGCACACTCAAAGTTGGAGCGCATAGTTATCTGCTGAACCAAGTTAAGGATCATGTTTATGTATTATGTCTGTTTTTTTCGTAAGAATCAAATAGGTTAAGTTGCTCGGACTCTCTAATGATGCAACACTTGTATTAGATCCTCCGAAAATTCACTACTTTTGGAAGATCCAACACACAATTGTCGAGATCTTTGAAGACTTTGAGCAACATAGCAACAACGTTTTCGATATACAAACTTCAACGGCTGCAGGAGCACGCTTTCTATTAGACAAATAACCTTGGTCGACATAGAGACGTGACAGAACTATCTCTTTACGCCTCTTCTCATTAAGGAATAACGACTTGGATGTGAAATGGGTTTTGGAGGTCAGAGTAAAACGTATATTCAATCTTTGAGAGGTAGTTAGAAGCCGTTTCCAATAGACCCTTTGGCTCAAGGAAAATGGAAATATTAACCTCACTATCTTCATCAAGTTTCCATTAGCAATCAAATCAATAGAAGATAGGGCAACAAAGAAGGATTGAAAATGTCTCTCAATAGATTGAAATGACTTTCAATAATTTTATTAAGCGTTGAAGGACTTACAATAGACATCATAAACACATAATTTGAAATTTAAAACAATCTTAAATATCAAACTTATTTTGCTAAAAATTACTATTGCATAACAACGTAACTAAAAGCAAACTTCAACGGTGAAGTTATTCAATTATATGTGATATGAATGATTCCATGGCCTCGCGTGCAAGTCCTCCGTGGCTAACAGAGTTTTTGATCTTTTTGCTCAATTCCATTGCCGTTTGCCTCATTTCTTCCCCTTCTATGGTACTCGTCAATGTCTCGATAGATTTCTCTATGGTTGATGCTTTTACCAATTCATCGCGGTGAGACCAACACTTGACAGTGATTCCAATCTCCAACAAATTAGTTACAAGTATAGCGTTAAATGGCTGATCGAAACTGATTGGCCTAGTAGCTATAGGTACTCCCATGTTAATGCTCTCGATACATGAATTCCATCCACAGTGACTCATAAACCCCCCTGTCGATGAATGTCCCAAGAATTCTAATTGTGTTGCCCAATTAACCATTATTCCTCTTCCTTCCACTCTTACTTCAAACCCTTCGGGTAATTCAATCTTTACGACTTTATCTTTAAGTTTCTCCGCGTTATCTCCTTTTCTTAGTACCCAAATAAATCTACGGTTGCTCTGTTCTAAACCCAGAGCAATCTCATTGACTTGCTCTTGTGATAACGTAGTCGTTGATCCAGATGAGATGAGTATCACCGAGTTAACATCTTGTTTGATTCGAGAAATTCTAGGCATTGATCATAACGCAGAGTGATGTTGCTTGATCGCGATCATTTTTTTGCGTTGGAGATGAAGGTCTCAACAGGTTATCGAAATAGATGTTTGAAGCTCTTACATCACCTTGAACGCGAAGTTTCAAATATTCGTTAACATTAGCAAAACAGAGGAAATGTACTTGTAATTTCATTTTTAACTGAGATCGCCCTATGATGAGAAATATATATATATTTTTATTTGTCTTG</genome_strand>
        <mrna_strand>GCGTTTAGGACAACTTCATTCTCTTCTTCCTGGCTATGTTCACCTTGCAAAGAGAACAAATATTTTCAGTAGTAGAGATTGAACTGCACTCATGCCTCTCGCGCATCAAGTTGACCGTTCCGCCTTACGTAAGCAATGCCATTCAGCCATTAACTTCTTCTTTACATTCATTGTGTTTGTACCAAATGCAGGCCATTGTAGAGTTCAGAATCAGTGATTCAAGTGTGAAAGTCTCGGCAGGTGTTTCCTGGTATGCCTCACAAATCTACTTGTTTTGAACAATGAACAATATGTTTCATTTTGTGTCTTACGTGTATTATGTCATATAGGATACGCGTGTCTATTTGTTCAATTTTAAACAAGTTTAACTGCTTACTAATGCACACTCAAAGTTGGAGCGCATAGTTATCTGCTGAACCAAGTTAAGGATCATGTTTATGTATTATGTCTGTTTTTTTCGTAAGAATCAAATAGGTTAAGTTGCTCGGACTCTCTAATGATGCAACACTTGTATTAGATCCTCCGAAAATTCACTACTTTTGGAAGATCCAACACACAATTGTCGAGATCTTTGAAGACTTTGAGCAACATAGCAACAACGTTTTCGATATACAAACTTCAACGGCTGCAGGAGCACGCTTTCTATTAGACAAATAACCTTGGTCGACATAGAGACGTGACAGAACTATCTCTTTACGCCTCTTCTCATTAAGGAATAACGACTTGGATGTGAAATGGGTTTTGGAGGTCAGAGTAAAACGTATATTCAATCTTTGAGAGGTAGTTAGAAGCCGTTTCCAATAGACCCTTTGGCTCAAGGAAAATGGAAATATTAACCTCACTATCTTCATCAAGTTTCCATTAGCAATCAAATCAATAGAAGATAGGGCAACAAAGAAGGATTGAAAATGTCTCTCAATAGATTGAAATGACTTTCAATAATTTTATTAAGCGTTGAAGGACTTACAATAGACATCATAAACACATAATTTGAAATTTAAAACAATCTTAAATATCAAACTTATTTTGCTAAAAATTACTATTGCATAACAACGTAACTAAAAGCAAACTTCAACGGTGAAGTTATTCAATTATATGTGATATGAATGATTCCATGGCCTCGCGTGCAAGTCCTCCGTGGCTAACAGAGTTTTTGATCTTTTTGCTCAATTCCATTGCCGTTTGCCTCATTTCTTCCCCTTCTATGGTACTCGTCAATGTCTCGATAGATTTCTCTATGGTTGATGCTTTTACCAATTCATCGCGGTGAGACCAACACTTGACAGTGATTCCAATCTCCAACAAATTAGTTACAAGTATAGCGTTAAATGGCTGATCGAAACTGATTGGCCTAGTAGCTATAGGTACTCCCATGTTAATGCTCTCGATACATGAATTCCATCCACAGTGACTCATAAACCCCCCTGTCGATGAATGTCCCAAGAATTCTAATTGTGTTGCCCAATTAACCATTATTCCTCTTCCTTCCACTCTTACTTCAAACCCTTCGGGTAATTCAATCTTTACGACTTTATCTTTAAGTTTCTCCGCGTTATCTCCTTTTCTTAGTACCCAAATAAATCTACGGTTGCTCTGTTCTAAACCCAGAGCAATCTCATTGACTTGCTCTTGTGATAACGTAGTCGTTGATCCAGATGAGATGAGTATCACCGAGTTAACATCTTGTTTGATTCGAGAAATTCTAGGCATTGATCATAACGCAGAGTGATGTTGCTTGATCGCGATCATTTTTTTGCGTTGGAGATGAAGGTCTCAACAGGTTATCGAAATAGATGTTTGAAGCTCTTACATCACCTTGAACGCGAAGTTTCAAATATTCGTTAACATTAGCAAAACAGAGGAAATGTACTTGTAATTTCATTTTTAACTGAGATCGCCCTATGATGAGAAATATATATATATTTTTATTTGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U564534" ref_strand="+" ref_description="SGN-U564534 Tomato 200607#2 [43 ESTs aligned] (*GB) gi|6226510|sp|Q9ZSK5|ZOG_PHALU (e_value=6e-94) Zeatin O-glucosyltransferase (Trans-zeatin O-beta-D-glucosyltransferase); (*ATH) AT2G15490.1 (e_value=1e-48) | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr2:6768717-6770582 FORWARD | Aliases: F9O13.4; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=4e-95) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1; ">
      <seq>aaaaaatggtccaatattatatttgtttttttctacattatctttggtatttattagtatgttgcatccctgtttgtattgtccataactcattttttctcaaagttctttctcctttttgttgctatggctgctaccaatgaagtcattgtggccatggtaccattttatgattacagccatctcaataacctcttagatctctctcgtttcatcgcgtcccataacataccagtacacttcatctcatttgttgatatgaaccgagatttgaaacttcgtctcaaaggtagtcccggggcctcaaacatccatttcgaagaccttttgagaccttcagctccaacagaaaatgatgttcgcgatggagagcctccgattctagtgttcctggaaaaactaacaaagcctattaatgaaatatgtgttcaactctctacaaaagcaaaaaagttagtcattgttcatgaccttataatgagtgaacaaatattggaagtaaatacattgtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaaggtaagtacccagatttacttgcgaaagcaaaaggcaagccgttatgggcttttggaccatttcatatgctgctagaatcaaactctaacatcactccgcgtcatgatcaatgtctagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagagcattagcaaaggagtacctgtagcaacttggccaatcagttacgatcagccatttaacgctgtattcctaacgaatatgttgaagattggaatcgctgtcaagagttggtctcaccgcaatgaactgataacagcatcaaccattgagaaatctgtcaagacgttgatgggtacggtagaaggggaagagatgaggcaaagggcagtgaaattgagcaaacagatgaaaaactctgttaggagcggaggacttgcacgcaaggatatggaagctttcatatcacatattattgaataacttcaccgttgaaatttgcttttagttactgcattcgcaaaataagttgtttagtttgagatgaagttgaattttggttaagttgtttgagttgttgaatttcaaattaagcagattatgagtttatggtggctattcaaagctaataaaattattgacagtcatttcaatccattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48220" stop="50479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48520" g_stop="50180" g_length="1661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1661" r_length="1661" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-U564534" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48520" e_stop="50180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCAG</genome_strand>
        <mrna_strand>AAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U564533" ref_strand="+" ref_description="SGN-U564533 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|20067054|gb|AAM09516.1|AF489876_1 (e_value=1e-56) putative; (*ATH) AT2G15490.1 (e_value=2e-36) | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr2:6768717-6770582 FORWARD | Aliases: F9O13.4; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=3e-57) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1; ">
      <seq>gtcgaatgtcaaaagttacatgttccatacaggatcgacttttagcagatattcatccatcaaacaaacgattcctgacttagttgatgatgacgatgatcacgtcaagtttatcaaggaaatgcaggatgagtttccattactggaggcacatgagaaatattgtttccaaatggagcttgatgacaaggatatacattactccggagaaatcataaactcgtgtagagaaatggaagaatttctcgacaagcaagaggccagctcagtgatattcgtgtcatttggatcaacgactacattatcacaggagcaaatcaatgagattgctctgggtttagaacagagtaatcacagatttatttgggtactaagaaaaggagataactcggagaaacttaaagagaaagacgtaaagattgaattaccaaaagggtttgaagagagagtggaaggaagaggaatagtggttaattgggcaccacagttggaaatattggggcatttatctacgggtggatttatgactcactgtggatggaattcatgtatcgagagcattagcaaaggagtacctgtagcaacttggccaatcagttacgatcagccatttaacgctgtattcctaacgaatatgttgaagattggaatcgctgtcaagagttggtctcaccgcaatgaactgataacagcatcaaccattgagaaatctgtcaagacgttgatgggtacggtagaagggggaagagatgaggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="48729" stop="50202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49029" g_stop="49267" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49268" i_stop="49384" i_length="117">
            <donor d_prob="0.628" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49385" g_stop="49902" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="758" r_length="519" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-U564533" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49029" e_stop="49267"/>
          <exon e_start="49385" e_stop="49902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAA-GGGGAAGAGATGAGGCAA</genome_strand>
        <mrna_strand>GTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAG.....................................................................................................................AATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGGAAGAGATGAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U584442" ref_strand="+" ref_description="SGN-U584442 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|147833057|emb|CAN70546.1| (e_value=0) hypothetical; (*ATH) AT5G57870.1 (e_value=2e-168)  Symbol: None | eukaryotic translation initiation factor 4F, putative / eIF-4F, putative, similar to SP:Q03387 Eukaryotic initiation factor (iso)4F subunit P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam profiles PF02854: MIF4G domain,... ; (*SWP) sp|Q03387|IF41_WHEAT (e_value=2e-166) Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum; ">
      <seq>ggtagagaagagaggaaaagcaatatctctctttctctctctctctaaaaattcttactttctctctctaaaaatctaatcttttgtatctctatacacatatagatacacgtttatctgtatctatagctttttgttgattcgtttttggtttagatttgccatttttctttttgtgtgtggaggtgttcgaattgatcggactgtggagaattgaggtatgcaggctgatcagacggtgataagtttgagaccaggtggtggtaacagaggtggtggaagcagagtatttggctctcgctttgatacctcatctaccaattctgatctctcaggttttcgtcctcatggaggttcttcatctttgccatctttcaagactggagattctcgttttgacagccatgaacgtgttcgctatactcgagatcagctcctgcaactgagggaggcggttgtcttacagttacctgaggttattctgcaaatcaaacacgaagttgaagctgaactgtttggggaagattcctctcggggtcgtgtggatagcaatgtgcaggtgcagtctcagggtcgttattctgaaccagacaatcgtgactggcgtaataggccagcacaattttctgcccccatagaggagaggtcatgggaagcacttcgagaaaacagggaatttggtggccagtatactcggcaagagcaatcacagtttgcaagagctcaagtttctgccaatcaagggggaggtcctgctcctacactgatcaaagctgaggtgccatggtcagttcgaaggggcactctttctgacaaagatcgtgtcttgaaaacagtcaaggggtaatctttctggaaattctagttaatgcttttaacaagttctgtattataattccaagctattttttcaccacatcttgaaagtagggaactgcatttcttctgtactaccttttctctattcatggatataataagccgtcattgcaaataaataaaaaggtttcaatatggtcttggtttcagatgtagtttgcacattcttttaaggtgaattttaggatatccttatttgtacatgattgatgcaagtattatcgatcttgcagaatacttaacaagttgaccccagagaaatttgatcttctcaaaggccaattaatagattcagggataacaagtgcagacattctggagggtgtgatctccttgatatttgacaaggctgtattggaacccaccttttgcccgatgtatgcccagttgtgttctgatctcaacgagaagcttcctccatttccatctgatgaacctggtgggaaagaaatcacgtttaagcgagttcttctgaataattgccaagaggcatttgaaggttctgacaaactgagggaagagatgagacgaatgactgctccggagcaggagtcggaacgcaaggacaaagaaaggttgatcaaattgcgcactcttggaaacatacgtcttattggggagctattgaagcaaaatatggttcctgaaaagattgttcatcacattgttcaggttattgattgttttctattagcttaataatcttcttggtcctttccctcataaatgtaaccaatatatcaattttgtggaaaattgtcttcctgatcttgcttacaggaactattaggacaagatcccaaaagctgtccagaagaagagaacgttgaagctatatgtcagttctttaacaccattggtaagcagcttgacaagaagcaaaagtcgaggcacatcaatgatatatatttcaaccaattgaaagaactatcgacaaaccctcagctggtagcacgcctaaggtttttggttcgtgatgtgctggatttacgtgccaataactgggtccctaggcgggaagaggtgaaagccaaaaccattaacgagatccactcggaagcagagaagaccttggggttgcgtcctggtgctacattaagcattagaaatgctcgtgctcctccaggtattcaagggaatttgggtcctggtggctatcccattaatcgacccggcactggtggtatgatgccagggatgccaggagcaaggaagatgcctgggatgccaggaatggataatgacaactgggaagttcctaggtcacgaatgccaagaggtgctcagcaaccattgattgggaagtcgccggccttgaacacaagactgttgcctcagggtagcaatgtcggcatgagtggcaggagtagtgctctcttacaaggtagtggtggacctcctgtccgaccatcaggctatgtctctggtatggagcctgtatcacaagttccagtaccagttaagccatctccaactagtaccgttttgcctgttgctgggaaacctcaggctccagctgcaaggtcaaatcctgaggagctgaaaagaaaaacagtttcacttttggaggaatattttagtgttcggattttggatgaagccttacagtgcattgaggaactcaaatcccctgccttctatcctgaggttgtcgagaaagccatatcactcggactggacaaaagcccaccacgcgttgaaccagttgcacaacttcttgagcacttgtctgctgaaaaggtttttactgctacagacttggctactggatgcttgaactttgcttctcaattggaagatcttgcaatggatttaccaaaagcaccagcaaatttcggggagataatttcgaggctagttttgacgggggcaatggacttcaagttggtgaatgagatcctgcagaaggtaaccgatgacttataccagaaggacttatttgctgccatcatgaaagctattagctctagccctactggtcaaggagtgttagactcacaagcacctgatgtcaaagcctgcaaaaatctgttccagtaaaaagctcaaatcctcgtcaatggaatgtgctccatatcacttatcctcgagatggcctttccgttgtgctcagtggactaaagcagctgtatcacagtttttcatcattggaactgtagtaaaggacaggtgagtttatgtgagttgtatacttttcccaaagtgtgttcattagacgacgaaagacagttttgcaacatggtaaattatacgccatatttgcttgaggcaacgggctgcttgacggagtccagccgttttgtattacattagtttttcatttattttttcccgttgacttgttatattaagttttgtcgaacttgtgagttcataaaatgcaactgttcctatctttacaccattttaaagctgaatttgataacataagttttcttcagtttatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="63805" stop="72004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64104" g_stop="64482" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67519" g_stop="67590" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="451" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67899" g_stop="68000" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="553" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68297" g_stop="68488" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="745" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68489" i_stop="68949" i_length="461">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68950" g_stop="69404" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="1200" r_length="455" r_score="0.998"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69405" i_stop="69494" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69495" g_stop="70196" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1201" r_stop="1902" r_length="702" r_score="0.999"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70197" i_stop="70276" i_length="80">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70277" g_stop="71704" g_length="1428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1903" r_stop="3329" r_length="1427" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-U584442" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>3330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64104" e_stop="64482"/>
          <exon e_start="67519" e_stop="67590"/>
          <exon e_start="67899" e_stop="68000"/>
          <exon e_start="68297" e_stop="68488"/>
          <exon e_start="68950" e_stop="69404"/>
          <exon e_start="69495" e_stop="70196"/>
          <exon e_start="70277" e_stop="71704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGAGAAGAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAGGTTGAATCTTTTTTTCAGATCTATGGATCTTTTTGCTTTGTGGATTTGCTTTTTCTTGATGTTCTTTAGCTGTTTGATTTATCTATTGTTGATCTTTTGTTGTTTTCAATGTGAAAAATCCAATCTTTTTTACTATCTAGCTTGTGATTCTGCATTAGAGAGCCTCTGTATTGTTGTTTAGAAGATAAATTATTAAGCATTGGAATGGTGGTGGAGCCGGAGTTTCGCTCGGGGATAGAATATTTACTTTGTATATATACTGTAATGCTTTGAGTTTTCGGGTGAAGGGGATGAATTCCCTTGTGGCCCCTAGCTCTCCCTAGGGCTTGATTGAAATGTGGTTGTTTAAGTGGGATGGATATAGGTGATTCACGTAATCCAACCACAACTAGTTCAAGGCTGGCTGAAGCGCGTAGTTGATTGATTGATTTGTTGAAATTAGAAACAATGTAAGCATACTTCTTTTTTTTGCGAAATACAATCTTTGGTTTCTACTTGGTCTCTTTCTGATTATATTGCGTAATGATATTGGTGATATCTGTTGTTATGTGCCTGCTGAATGCTTCCGTGTTGCTCAGGTTCGGGGAGAGAGTATCAAGTCTCATGTTGGATATATGTCTGGTGCATTATTCAACTGTGCCTATAGTTTATAGAAATTTATTTCTTTTTGTAAAAAAAATTGTGGGTCTATGTGTTCCTGTTGTAGAACATGTGTTTTTATATTTTTACTTTATGCATGAATACAACAGCATTACCTGTGTGATACCTCAAGTGGGGTATGAGGAGGGTGGAGTGTACTTAGACCTTACCTCCACCTTGTATGATGTAGAGAAGTTGTTTTTGATATATCCCTGCCTCAAGAGAAGTGTTTTCAAAAACAGGTTTGAGGTTAATAAAAGGGTGATGAAAATGGTAAAAGAAAAGTATTGACAGTACAAATAGTAAAAATCTAAGTAAGAGAAACAACAGTGGTAATACAATTGACGAATAAGATTATAATAGAACAATAATAATGATACTTTATGCGTCAATCTGTATGATTATTAAATCTGTAAGCAAAGTTGTCAGTGTTCTCCGTGTGATTGGTGAGTTGGGTGGTTTTCTGATGAAGTTTCTGACTTTTGTGATTAATAATATCTATAAACGGAAGTGCAAATGCTTTTAATGGTACACTTCTGTTGTATGGGTGGTCGACCAATCGAGTATCTGGGCTGGACACCTTGACTCGTGGTAGCTGGGTGCTTGATGCAGACTATCTTGTCAGTGGGATGTGCATAGTGGTTTTCTGTACCATTTTGTGTCTTCTTTTGGCTTGACATGAGACTGCACTATCTGAACTTGGATAGAACTTCTGTAGATAACATGGAAGTGCCTCTGCAATATGCTGAAATGAAAACATGAACAGCCTCATTAATGACATCACCTTTTCCAAACTGTTGAAATGAGAATTATACAGGAATACATTTAATATGAACAAGAAAGATGACTATATTGTTGGTACACCCCTCGTTCCAAAGAGAATGACCCACTTTGACTTGACACGGAGTTTAAGAAAATAAAAAGACACTTTTCAACAACGTGGTCCTTAATTAAAGTAATGTGAAATGTACAAAAATGCCCTCTAATCTTGTGGCCTAAAATATGCCATGTGGGAAGTTGAAATTAAAGTGTTACCAAAGGGGAAATGAGTCATTCTTTTTGAGACAGACTAAAAGGAAAGTAGGTCATTCTTTCGACAACTGCTGCCTGCTTCAGCTGCTCAACTCTCTCTTACATAATAAGAGAATATATTTGCGTTAATGTCCTATATCTCCTAATTATTGGCAGCTCACTTTAGTTGTGTATCTGCTGTAAATATGGAGGGAGAATCATTAGTAGGCTTTAGGTGGGCTCTTAAGAATTATCAGGCTGCCCATAAAGAACCCTACTAAAAACTGAAAGTTTTAGTAGCTATTAGCCATGCAAAAGCCAGTCACTTATGGAATTCTGTTCTTTGGACAGTAAATTCAGTTAGTGGTAGATGTACAGCTTGATTTTTGTGTTGTTAGTTTGGAATATATTGTAGTAAGTTAGAACGTTAAATAACTGAAGTGAATTGAAGAGTAAGCAAAAGAGTATGACCTTTCTCTGGTGAATAGTGTTGGTTATGTGGCATTTAGGAATGTGAGAATTGATATTTCGTTGTGCTTGTGCATGATTCAAATATGAATGAGAAAGATAACTGTATGTTCATTGGTCCAGTAGAAGTGTATGTGTGCATAATATTTCAATTCATTCTTGTTAACGTCCTAATTCTTGGCAGCCCACTATAGTTGTGTACCTGCAGTAAACATGGACGGATAATCATTAGTATGTTTTTGGTGGTCACTTGAGAATTATCAGGCTGCCCATAAAGAACCCTACTAACACTGGAAGTCTCATTAGCTATTTGACCATGCAAAAGCTAGTCATGTTGTTCATAGTGCTATGTGGGAACTTGAGCATTGGCATTTTTTCATGCTTGTATATCATGAAGATAAAAAAGAAAACATATCACGCAACTAAAATTTGAGGGAGATCCTTAGATGAAGCCTGTTAGGTGATGTTTTCCCCCGGAATTGTGATAAGTTCTAGATATATGATTTCTGATTTACGAAAAAAGAGAAAGAACAGGCTATCAACTCCTTTTGTTGCAAAATATTCTTAAACCGTCATTGTCTAATATATTACCAGTATGAAGACTCTGGTCCCTGGTTGCTTGTTTAGTCAGTCAGACTGACATCTCTGTTGTGTCTTAGCTGATAGCCTATGAACTTCGTAAAACATGTAGAAATATTTTAAATTCTTACAATCAATTCACCTATATTTCCTTCTATGTTCCCTTATTTTCACAAGGAGCATTGATTCTGATGAGTGCTTTCTTGCTGGATTTGCCTTTTTATGGTACTTTCCGTGTTCTATTCTAGCTCAAGATGTGTATCTTTTTGCTTGGCTTTCCTTTTAAGAACTTGTTGTTCTCAGAGTTCTGTTTGTTCTAACTCACCTTTATCATTGTAGACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAATGTGAGTTTTTCTCCGACTTGATATAAAAAGTTGTATTTCTTCTCATCTGACAATTTTGTTGGCATTTCTCTCCTCCCCTCTGTGGACTAAAAAAAGCAATATTTGATGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTTCGTTGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTCGGTTACTGCTTGTCTATGTTCTATTTCACTTTCTTCCAGTTTTCACTTTCTGTTGCCTTATTTTCCAGTTTAATTGTCTTTCGGTAGGTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGGGTAATTAATTTCCTCTTGCGCAGTTTGGAGAATGTTCATTATTGATTTGAATAACTTCTGTTAATTTATTCCTGCTGTTGTACTCCCAAAGACAAGTTCAGTTTTCCATGCATTCTGAAAGCCATCAACACTTGAAGAAAAGACGTCCTATTGAAGAATAATATACTTGATTATCACCACATTGTGGTTGTTTTGCACTTTGTTGTATGTATTAAAATTAGGTATACAAATACATAGTTGTATTATCTTATTGACATAATTTGGAACATCAATTAGATTAATTTAAGAGATATCTCTTTTTTCCTACATAATGTCTTTCTCTCTGTTTTAATTGCTAAGTTTATTCCTTGCACCAGCAATGGTTTCTTTTTTTTTTTTCTGCTCAAACTACATGATTTTGCCTGATGATGAACTATCTGCTACATCTGGTCTCTGAAACTCTTCAATTGTTTGTGTACCAGGGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGGGTAATCTTTCTGGAAATTCTAGTTAATGCTTTTAACAAGTTCTGTATTATAATTCCAAGCTATTTTTTCACCACATCTTGAAAGTAGGGAACTGCATTTCTTCTGTACTACCTTTTCTCTATTCATGGATATAATAAGCCGTCATTGCAAATAAATAAAAAGGTTTCAATACGGTCTTGGTTTCAGATGTAGTTTGCACATTCTTTTAAGGTGAATTTTAGGATATCCTTATTTGTACATGATTGATGCAAGTATTATCGATCTTGCAGAATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAGGTCTTATCTTTCGGATACTTATATTTCTGTAATTTCTTGTTTCCATCGTATGTCTTGGTTAACTGATGTATTCTCTTCTCTAAATTCTAGGGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGTTATTGATTGTTTTCTATTAGCTTAATAATCTTCTTGGTCCTTTCCCTCATAAATGTAACCAATATATCAATTTTGTGGAAAATTGTCTTCCTGATCTTGCTTACAGGAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTACGTGCCAATAACTGGGTCCCTAGGCGGGAAGAGGTGATACACGATTTGCTTATGCAGTAGTTCTGACTAGTTAAGTCCACTTCTTTCTCATGATGTATTAACTTCTTTTATAGGTGAAAGCCAAAACCATTAACGAGATCCACTCGGAAGCAGAGAAGACCTTGGGGTTGCGTCCTGGTGCTACATTAAGCATTAGAAATGCTCGTGCTCCTCCAGGTATTCAAGGGAATTTGGGTCCTGGTGGCTATCCCATTAATCGACCCGGCACTGGTGGTATGATGCCAGGGATGCCAGGAGCAAGGAAGATGCCTGGGATGCCAGGAATGGATAATGACAACTGGGAAGTTCCTAGGTCACGAATGCCGAGAGGTGCTCAGCAACCATTGATTGGGAAGTCGCCGGCCTTGAACACAAGACTGTTGCCTCAGGGTAGCAATGTCGGCATGAGTGGCAGGAGTAGTGCTCTCTTACAAGGTAGTGGTGGACCTCCTGTCCGACCATCAGGCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAACGTAAGTTTGTCTTCAGTTTATCTCT</genome_strand>
        <mrna_strand>GGTAGAGAAGAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT........................................................................................................................................................................................................................................................................................................GTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGGGTAATCTTTCTGGAAATTCTAGTTAATGCTTTTAACAAGTTCTGTATTATAATTCCAAGCTATTTTTTCACCACATCTTGAAAGTAGGGAACTGCATTTCTTCTGTACTACCTTTTCTCTATTCATGGATATAATAAGCCGTCATTGCAAATAAATAAAAAGGTTTCAATATGGTCTTGGTTTCAGATGTAGTTTGCACATTCTTTTAAGGTGAATTTTAGGATATCCTTATTTGTACATGATTGATGCAAGTATTATCGATCTTGCAGAATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAG..........................................................................................GGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGTTATTGATTGTTTTCTATTAGCTTAATAATCTTCTTGGTCCTTTCCCTCATAAATGTAACCAATATATCAATTTTGTGGAAAATTGTCTTCCTGATCTTGCTTACAGGAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAACGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTACGTGCCAATAACTGGGTCCCTAGGCGGGAAGAG................................................................................GTGAAAGCCAAAACCATTAACGAGATCCACTCGGAAGCAGAGAAGACCTTGGGGTTGCGTCCTGGTGCTACATTAAGCATTAGAAATGCTCGTGCTCCTCCAGGTATTCAAGGGAATTTGGGTCCTGGTGGCTATCCCATTAATCGACCCGGCACTGGTGGTATGATGCCAGGGATGCCAGGAGCAAGGAAGATGCCTGGGATGCCAGGAATGGATAATGACAACTGGGAAGTTCCTAGGTCACGAATGCCAAGAGGTGCTCAGCAACCATTGATTGGGAAGTCGCCGGCCTTGAACACAAGACTGTTGCCTCAGGGTAGCAATGTCGGCATGAGTGGCAGGAGTAGTGCTCTCTTACAAGGTAGTGGTGGACCTCCTGTCCGACCATCAGGCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAACATAAGTTT-TCTTCAGTTTATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U584443" ref_strand="+" ref_description="SGN-U584443 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147833057|emb|CAN70546.1| (e_value=8e-140) hypothetical; (*ATH) AT5G57870.2 (e_value=5e-130)  Symbol: None | eukaryotic translation initiation factor 4F, putative / eIF-4F, putative, similar to SP:Q03387 Eukaryotic initiation factor (iso)4F subunit P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam profiles PF02854: MIF4G domain,... ; (*SWP) sp|Q03387|IF41_WHEAT (e_value=1e-121) Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum; ">
      <seq>gtcgagatcagctcctgcaactgagggaggcggttgtcttacagttacctgaggttattctgcaaatcaaacacgaagttgaagctgaactgtttggggaagattcctctcggggtcgtgtggatagcaatgtgcaggtgcagtctcagggtcgttattctgaaccagacaatcgtgactggcgtaataggccagcacaattttctgcccccatagaggagaggtcatgggaagcacttcgagaaaacagggaatttggtggccagtatactcggcaagagcaatcacagtttgcaagagctcaagtttctgccaatcaagggggaggtcctgctcctacactgatcaaagctgaggtgccatggtcagttcgaaggggcactctttctgacaaagatcgtgtcttgaaaacagtcaagggaatacttaacaagttgaccccagagaaatttgatcttctcaaaggccaattaatagattcagggataacaagtgcagacattctggagggtgtgatctccttgatatttgacaaggctgtattggaacccaccttttgcccgatgtatgcccagttgtgttctgatctcaacgagaagcttcccccatttccatctgatgaacctggtgggaaaaaaatcacgtttaagcgagttcttctgaataattgccaagaggcatttgaaggttctgacaaactgagggaagagatgagacgaatgactgctccggagcaggagtcggaacgcaaggacaaagaaaggttgatcaaattgcgcactcttggaaacatacgtcttattggggagctattgaagcaaaatatggttcctgaaaagattgttcatcacattgttcaggaactattaggacaagatcccaaaagctgtccagaagaagagaatgttgaagctatatgtcagttcttttacaccattggtaagcagcttgacaagaagcaaaagtcgaggcacatcaatgatatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="67263" stop="70383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67562" g_stop="67590" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67899" g_stop="68000" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="131" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68297" g_stop="68488" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="323" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68489" i_stop="68949" i_length="461">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68950" g_stop="69047" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="421" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69048" i_stop="69316" i_length="269">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69317" g_stop="69404" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="509" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69405" i_stop="69494" i_length="90">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69495" g_stop="69845" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="860" r_length="351" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69846" i_stop="69953" i_length="108">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69954" g_stop="70083" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="990" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-U584443" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>990</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67562" e_stop="67590"/>
          <exon e_start="67899" e_stop="68000"/>
          <exon e_start="68297" e_stop="68488"/>
          <exon e_start="68950" e_stop="69047"/>
          <exon e_start="69317" e_stop="69404"/>
          <exon e_start="69495" e_stop="69845"/>
          <exon e_start="69954" e_stop="70083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAGATCAGCTCCTGCAACTGAGGGAGGTAATATCATTATTTAAAATTGTTCAGCGATAGTGTTTATTGATTATTAGTTTTCTGTACATAGATAGATGTGAGACAAATCTGGCCATTTCTTCTCTCTTATTATTACCATTTTAAAAAAAAAGCCACTTTTACTGATAGGTATCGACTGCGATGTAATTTCTATTATTAAGAATGCAGTCCTCTTCTTCCATATTTTAGATCTCTCTCGATTCCAGCTACCCAAAAAAAGAAATAAAAAATGAAATCATTGTGGATTATCATAATTTATTTGCTTGTCCTTGATTCTGGTTTTTGTGGTCTTCTAGGCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAATGTGAGTTTTTCTCCGACTTGATATAAAAAGTTGTATTTCTTCTCATCTGACAATTTTGTTGGCATTTCTCTCCTCCCCTCTGTGGACTAAAAAAAGCAATATTTGATGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTTCGTTGCTTTTGGTAATGTTGCAAACTAAAGAACAGTTCCAACTCACTATTTTCGGTTACTGCTTGTCTATGTTCTATTTCACTTTCTTCCAGTTTTCACTTTCTGTTGCCTTATTTTCCAGTTTAATTGTCTTTCGGTAGGTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGGGTAATTAATTTCCTCTTGCGCAGTTTGGAGAATGTTCATTATTGATTTGAATAACTTCTGTTAATTTATTCCTGCTGTTGTACTCCCAAAGACAAGTTCAGTTTTCCATGCATTCTGAAAGCCATCAACACTTGAAGAAAAGACGTCCTATTGAAGAATAATATACTTGATTATCACCACATTGTGGTTGTTTTGCACTTTGTTGTATGTATTAAAATTAGGTATACAAATACATAGTTGTATTATCTTATTGACATAATTTGGAACATCAATTAGATTAATTTAAGAGATATCTCTTTTTTCCTACATAATGTCTTTCTCTCTGTTTTAATTGCTAAGTTTATTCCTTGCACCAGCAATGGTTTCTTTTTTTTTTTTCTGCTCAAACTACATGATTTTGCCTGATGATGAACTATCTGCTACATCTGGTCTCTGAAACTCTTCAATTGTTTGTGTACCAGGGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGGGTAATCTTTCTGGAAATTCTAGTTAATGCTTTTAACAAGTTCTGTATTATAATTCCAAGCTATTTTTTCACCACATCTTGAAAGTAGGGAACTGCATTTCTTCTGTACTACCTTTTCTCTATTCATGGATATAATAAGCCGTCATTGCAAATAAATAAAAAGGTTTCAATACGGTCTTGGTTTCAGATGTAGTTTGCACATTCTTTTAAGGTGAATTTTAGGATATCCTTATTTGTACATGATTGATGCAAGTATTATCGATCTTGCAGAATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAGGTCTTATCTTTCGGATACTTATATTTCTGTAATTTCTTGTTTCCATCGTATGTCTTGGTTAACTGATGTATTCTCTTCTCTAAATTCTAGGGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGTTATTGATTGTTTTCTATTAGCTTAATAATCTTCTTGGTCCTTTCCCTCATAAATGTAACCAATATATCAATTTTGTGGAAAATTGTCTTCCTGATCTTGCTTACAGGAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATT</genome_strand>
        <mrna_strand>GTCGAGATCAGCTCCTGCAACTGAGGGAG....................................................................................................................................................................................................................................................................................................................GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT........................................................................................................................................................................................................................................................................................................GTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGG.............................................................................................................................................................................................................................................................................AATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAG..........................................................................................GGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCCCCATTTCCATCTGATGAACCTGGTGGGAAAAAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAG............................................................................................................GAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTTACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U597727" ref_strand="+" ref_description="SGN-U597727 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>caccagaaaatatagtgtataatgtagaggatgaatcatacggaccacatctcgttgctagcaatgaacatatagtatgcatgtattacatgtataagaagtttctttacactaaaaggataataatgtgctagcctacatgtcaacacaagttcgacaatgctcagcattaacacacaagtttcttaccacatttaactagacggtggaagacggatcaaaccctcaaagcaacagggtcttgccaagataatttttgttttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="72726" stop="73591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73026" g_stop="73291" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-U597727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73026" e_stop="73291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAGAAAATATAGTGTATAATGTAGAGGATGAATCATACGGACCACATCTCGTTGCTAGCAATGAACATATAGTATGCATGTATTACATGTATAAGAAGTTTCTTTACACTAAAAGGATAATAATGTGCTAGCCTACATGTCAACACAAGTTCGACAATGCTCAGCATTAACACACAAGTTTCTTACCACATTTAACTAGACGGTGGAAGACGGATCAAACCCTCAAAGCAACAGGGTCTTGCCAAGATAATTTTTGTTTTCCC</genome_strand>
        <mrna_strand>CACCAGAAAATATAGTGTATAATGTAGAGGATGAATCATACGGACCACATCTCGTTGCTAGCAATGAACATATAGTATGCATGTATTACATGTATAAGAAGTTTCTTTACACTAAAAGGATAATAATGTGCTAGCCTACATGTCAACACAAGTTCGACAATGCTCAGCATTAACACACAAGTTTCTTACCACATTTAACTAGACGGTGGAAGACGGATCAAACCCTCAAAGCAACAGGGTCTTGCCAAGATAATTTTTGTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U585504" ref_strand="+" ref_description="SGN-U585504 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157343168|emb|CAO66657.1| (e_value=7e-19) unnamed; ">
      <seq>cggggcttttttggggtttgtcttggtcaagagaaccttcttgccacctctctttctttctctataactcctttttttgtttggccctgttgttgtgttgttattattgtttctcccctctttacttctctcttatctgcctccttttgctccttttcttggtttctttcaacttttttgtctctttatttctccaagatctgatctttttatgtgaaaggattagtttgattcatctgtgatctgatatgtctaagaagatgaaaaggggtgctttggaatcatcatcttatggtgtttttgaagacacaaaggataggttgaaacatcaaacacttctgcaggactatcaagagctccagaaggaaactgatgccgcaaggcacaagctggaggattcaaagctgaggaaactaagattacaagctgaagttcgtttcttaccccagaggcacaagcatctattgcaatcgaagtccttaacaactccaaaagggaaagagctagtatccctaccaaatgttgaaacttaccccaggagtaggtcaagggatcaagttacgagaaaaaaggaagccaagctaaacaaactgccccctcttcctggccctaaaccaaacggaaggatacaggttgcaaaggtagttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="-" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="76016" stop="73526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75719" g_stop="75354" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75353" i_stop="74341" i_length="1013">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74340" g_stop="74270" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="436" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74269" i_stop="74041" i_length="229">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74040" g_stop="73826" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="651" r_length="215" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="-" ref_id="SGN-U585504" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75719" e_stop="75354"/>
          <exon e_start="74340" e_stop="74270"/>
          <exon e_start="74040" e_stop="73826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGGCTTTTTGGGGTTTGTCTTGGTCAAGAGAACCTTCTTGCCACCTCTCTTTCTTTCTCTATAACTCCTTTTTTTTGTTTGGCCCTGTTGTTGTGTTGTTATTATTGTTTCTCCCCTCTTTACTTCTCTCTTATCTGCCTCCTTTTGCTCCTTTTCTTGGTTTCTTTCAACTTTTTTGTCTCTTTATTTCTCCAAGATCTGATCTTTTTATGTGAAAGGATTAGTTTGATTCATCTGTGATCTGATATGTCTAAGAAGATGAAAAGGGGTGCTTTGGAATCATCATCTTATGGTGTTTTTGAAGACACAAAGGATAGGTTGAAACATCAAACACTTCTGCAGGACTATCAAGAGCTCCAGAAGGTATAAAAATCTTGTCTTTTTTCTTTTTTTGATCATTTGCTATGAAGAAATGGACTTTTTTGCTGTGTTGAATGGTTGATTTCTCTCTCTGTTGGAGTATCTTGTTCTTGCTTGTTAGAAATGTGGTGCCATTTGGTGTAGGAACCTCCTTTGAGTTTGATCTGTTTCCTATCAGTGATTCATAGAATTGTTAATTTTTTTTTATAATTGTGCGTGCACCTTGACTAATTTCACGGGAAACGGGCCACCTCCTGTTAACAACATGTACTAGATATAAAGAAATCATCTAGTGTTTTTTTTTGTCTCCGCTAGTCATTGAACCTTTATAGAGTGTTATTTGCTGTCTCTTTGTTCAATTTCTATCTGGAGTTGCCCTTTTCATCATTTCATTATTGAGGTCTCACCTGAGATTGTATCCCTTGGTTGAATTTGTTTGTGTTTTTTCCTAGGAGTTATTAGGAATTCTCTCTAAAACAACTCTTAGCACGGTTTGATGACAGGGACGGCTCTCTCCTGCCCCATCTAAATTAGGCTTTGTTATCCTTCGGGGTGGCTCAAATAGTTCGGCTAGGTACTTTCATAATGGAGGTCTCATGTTCAAAACCCTTTGCCTGCAACAACAGGGGGTCGGCCTTCGGGGTCGAGCTTGTTGCATGGGGCTTTCCTAGTGCGGTTTATCTCTCCCGTGTGGTTCGCGAGCTATTATACAAGGGTGGGATTTACCTTGTGCACTCCCAAAGGATAGCGACTGCGGGTTCCTTTGTCATAAAAGGAATACTAAGCTTTGTTTGTCTGAGAGTTCAATCCGTAATGTGTGTAAACACACATCACGCAGTGCACTCTTATCACTAGACCAAAGTGTTGGCGTAACAGTTCATAGATTATGTCCATCATAGTCGATGATACTTCAAACTGCAAGATGATCGAATGCTGATATGTTTTGTTAGAGTAAATAGTAATGTGTGTGTGCGTGTGATCAACCGGTTTTCTTACATGTAACCTTCAACTTTCAGGAAACTGATGCCGCAAGGCACAAGCTGGAGGATTCAAAGCTGAGGAAACTAAGATTACAAGCTGAAGTTCGGTAAGTTTGTTCAACATATCAAATGGTGTTCATATTGATTTGATATAGTTTCATTTTCTTTAGGAATTCTTGAATTCAGCTTGATTCGAAGACTTCAAAATATATAGCTTGCATAGTAGAATTAAGAAAAAAGAACTGTACTTCTGTGCATATGCATTTTCTTGAAATGCTCGTGGAGTTCCTTTTCTATTTGAATCTAAGTGCAGATTTTTTTTGCATGATTGTGCAGTTTCTTACGCCAGAGGCACAAGCATCTATTGCAATCGAAGTCCTTAACAACTCCAAAAGGGAAAGAGCTAGTATCCCTACCAAATGTTGAAACTTACCCCAGGAGTAGGTCAAGGGATCAAGTTACGAGAAAAAAGGAAGCCAAGCTAAACAAACTGCCCCCTCTTCCTGGCCCTAAACCAAACGGAAGGATACAGGTTGCAAAGGTAGTTGCTT</genome_strand>
        <mrna_strand>CGGGGCTTTTTTGGGGTTTGTCTTGGTCAAGAGAACCTTCTTGCCACCTCTCTTTCTTTCTCTATAACTCC-TTTTTTTGTTTGGCCCTGTTGTTGTGTTGTTATTATTGTTTCTCCCCTCTTTACTTCTCTCTTATCTGCCTCCTTTTGCTCCTTTTCTTGGTTTCTTTCAACTTTTTTGTCTCTTTATTTCTCCAAGATCTGATCTTTTTATGTGAAAGGATTAGTTTGATTCATCTGTGATCTGATATGTCTAAGAAGATGAAAAGGGGTGCTTTGGAATCATCATCTTATGGTGTTTTTGAAGACACAAAGGATAGGTTGAAACATCAAACACTTCTGCAGGACTATCAAGAGCTCCAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTGATGCCGCAAGGCACAAGCTGGAGGATTCAAAGCTGAGGAAACTAAGATTACAAGCTGAAGTTCG.....................................................................................................................................................................................................................................TTTCTTACCCCAGAGGCACAAGCATCTATTGCAATCGAAGTCCTTAACAACTCCAAAAGGGAAAGAGCTAGTATCCCTACCAAATGTTGAAACTTACCCCAGGAGTAGGTCAAGGGATCAAGTTACGAGAAAAAAGGAAGCCAAGCTAAACAAACTGCCCCCTCTTCCTGGCCCTAAACCAAACGGAAGGATACAGGTTGCAAAGGTAGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U566247" ref_strand="+" ref_description="SGN-U566247 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|194703866|gb|ACF86017.1| (e_value=7e-57) unknown; (*ATH) AT2G24020.1 (e_value=6e-56) | Symbol: None | expressed protein, contains Pfam domain PF02575: Uncharacterized BCR, YbaB family COG0718 | chr2:10224781-10226361 REVERSE | Aliases: T29E15.22, T29E15_22; (*SWP) sp|Q8GMT0|Y464_SYNE7 (e_value=6e-17) UPF0133 protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_0464; ">
      <seq>taattttgtggtgaaaaaatggcgtctacaagtgctttcacagctgggatttcaaatcttcatagcttcaaaaaaccgtgtcctaatgcaaatcaagttggtatgtggactttatcaagacctggttgtcgaaaggttttagataatcccagacctctgcaaatatgttctctgtttggaggaaaaaaggacaataatgagcagaacaacgatgctccttcaaaggcaggtctttttggcaacatgcaaaacttatacgagacagtgaagaaggcgcaaaatgtggttcaagttgaggcagtgcgagtacaaaaagagcttgctttagcagagtttgatggatactgtgaaggtgaactaatcaaggtaacactgtctggaaatcagcagccgatacgcactgaaattactgaggctgccatggcattaggcccagaaaaactctcacttctgattacagaggcatacaaggatgcgcatcagaaaagtgtactggcaatgaaggaaagaatgagtgatcttgctcagagtttgggaatgccagcaggccttggtgaaggattcaaacagtaaaaaaaattatcttcatgagtttcaattttgtaagctagcagacactaagtttatttttgcattaaaattatgaatacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="76447" stop="83498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76747" g_stop="76816" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76817" i_stop="79475" i_length="2659">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79476" g_stop="79630" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="225" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79631" i_stop="80506" i_length="876">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80507" g_stop="80607" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="326" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80608" i_stop="80713" i_length="106">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80714" g_stop="80753" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="366" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80754" i_stop="81586" i_length="833">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81587" g_stop="81658" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="438" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81659" i_stop="82356" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82357" g_stop="82413" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="495" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82414" i_stop="83038" i_length="625">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83039" g_stop="83198" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="654" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-U566247" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76747" e_stop="76816"/>
          <exon e_start="79476" e_stop="79630"/>
          <exon e_start="80507" e_stop="80607"/>
          <exon e_start="80714" e_stop="80753"/>
          <exon e_start="81587" e_stop="81658"/>
          <exon e_start="82357" e_stop="82413"/>
          <exon e_start="83039" e_stop="83198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTGTGGTGAAAAAATGGCGTCTACAAGTGCTTTCACAGCTGGGATTTCAAATCTTCATAGCTTCAGTAAGCACAATTTCTCCTCAGTATCCTTATGTAAACACTTTTCCACTTTAGTTAACATTTTTTGGGGATTTTTTTAGTTTAGAGAACTATTAGTTTGCCCTAAAAGAAAATATATTATTTTGTATTGGAAAGAATGTCTTGGATTTATATAGTCAATTAAACTAATATGGGACTGTGGTGAATTATTTTGAGAACAAATTGGCAATTTAATTAGTAAGTCCAATTTATCTTGCTTGGTTCAGATATTTAGAAAATGATATGAATAAGCTTAAATGAAGAAGTGGGGTTCATATAAACGACCCTAACTTGTTTGGGGCTAAGGCATTGTTGTTGTTATGGATTATGTTGGTGTGGAGTTCTTAATTTCTAATGGGGTTGTGTTGATAGTATACTAAATGCCATAAAAAATGAAGAGAGCCATTCGGCTGAAGCTGTTAGATTTCTTGATATGAAGTTAGCAACTTTCTTTGTTGAGAAGGTCTAATTTTGGATGGTAATCACAACAAATCCAATTTGTTTGAGGCTAAGGCATTGTTGTTGTTGTTGTTGGTCATGGTGGTGGTTACAATTCTTGATTGCTAATGGGGTTGTGTTAGTTTAGAAAATGCCATAAATATGAATATGGCCATTTGGTCGAAGCTTTAGCTTTCTTGATATTAAGTTAGCAACCTTCTTTGTTGAAAAAGTCTAATTTTGATGGTAATCACAAAATTTTACGACCCTTGAAGGAAGTTCTATCCAGCTTGTTTGGGGCTAAGACGTTGTTGTTACTACTTATGTTGGTTGGAGTTCTTAATTGCTAATGGGGTTGTGTTGATAGTTTTTATCAAAATGCCTTAAAAAACAAACATAGCCATTCATCGAAGCTATTAGCTTTCTTGTGTAATGCTAGGAACTTTCTTTGTTTAAAATCGCAATTTTGATGGCAATCACAAAATTTCCCAACCTTGGAAGGAAATTCTATCCAAGTTGCTTGGGACTAAGGCATTATTGTCATTATGGCTTATGTTGGTGTAGAGTTCTTAATGGCTAATGGGGTTGTGTTGAAAGCTTACAAAATGCCCTAAAGATGAATATAACCATTCAGTCGAAGCTATTAGCTTTCTCGATATAAAGTTAGCAACTTTCTTTGTTGAAAAATGCTAATTTTGATGATAATCACAAAATTTTCCAACCCTTGGATTTGTAAGTTATAGACTTATATCCAACTTGTTTGGGGCTAAGATGTTGTTGTTATGGCTTATGTTGGTGTAGAGTTCTTGATTGCTAATGGGTTTGTGTTGATAGTATACCAAATGTCCCAAAAAAATGAAGAGAGACATTCGGTTGAAGCTATTAACTTTATTGATATAAAGTTAGCAACTTTATTTTGTTGAAAAATTCTAGTTTCGATGATAATCGCAAGTTCTTCTAACCCTTGGAAGTTCTATCCATTATCCAACTTGTTTGGGGAGTCTGGGCTAAGGCATTGTTGGTGTTATGGCTTATGTTCGTGTATAGTGTATAGTTCTTAATTGCTAATGGGGTTGTGTTGATAGTTTACAAAATACCCTAAAAACCCAAGAGAGACATTCGGTCGAAGCTTTTAGCTTCTTGATATAAAGGTAACAATTTATTTTTTTGGATTAGTCTGATTTCGATGTTAAGCACAAAAAATTCAAACCCTTGTAAGTTCTATATACACATACACAAACAAAAATAAAAGAAAATCCCACATATATGTTTATGTTAAGTTTGTGCCTATTGCCATAAAGAAGTAGCAGAGTATATGTAGCAAAAAGTTAATGAATCAGACTCAGTATTTTCAACATGAAGTATAGACTTGTGTGTGAAGAACCACTAAAATTTCAAGCAATGAAATTTTAGAGGTGTTTCAAACAATTATTTACACAGGGAATAATAGATTTAACCAAGCTTCAAACTTAATTACCTCGTGTTTGAGTAACACGCTGCGCCTTCTGTTGATTAGGTCACTGTATCTCGGGGATGTGTAATTCTGATGCCCTTTCGTTTTCTTATCCTCAATCAATATAAGTTTATTCGTGAATTGTTTTCGAGAAATGATACTTATAAAAAGCTAAATGTTGTGGTTATTTATACGCGTCAAGAATTTCTTTTATGGTTAATAATTTAATTTCTAACCAAATGTTGTATGGAAGTCAGATTGCCCTTATGATGAAAATTATAGTAACAAAATGAAATGACTTGATACTTATCCATGATTTGTAGATAAGTAACAACCTTAGTTGCTCGGTCTCTTCACTTTTGGTGCCGCACCCTTGTCGACACAATGTGGAGTGGGTGTGGGACCCATACCTAACCTGGTCAACTAATTTTTAGTGCTTTGACCAAATTCGAGGAAGGAATTCTGGACTGATTCAATGAATTTTATAATCAAAATAAACACTAATGTGAATTCTCCACTTACATTAACTAAAATAAATCTTACATTTAACTCGAAAAAGAAAATGTATTAATATGCTTATTGAAATTTACTGAGTTATAGTTTTATATAGGCTTGATACACAGTTTTCTCCCTGAGTACCGTCTTGGAGTTCTTTATTCAGCATTCAGTTTACTCTTACAAGTGCTATACCTCCCTGGAAAAATTAAGCACTAACAAAAAATATTTCCTTTTTTACAATTTTGGTCTTTGCAGAAAAACCGTGTCCTAATGCAAATCAAGTTGGTATGTGGACTTTATCAAGACCTGGTTGTCGAAAGGTTTTAGATAATCCCAGACCTCTGCAAATATGTTCTCTGTTTGGAGGAAAAAAGGACAATAATGAGCAGAACAACGATGCTCCTTCAAAGGTATCTGAGTATATCCCTTTCCTTGTATAATATTGTATTGGTTACACTGACATTGGAGCTATCTTGTTTGATGACTTGTCGGTGATCATTTTAAGCTATGTGTAAGCACATAAAGACTAGAATGAAAAATCTTCTTATAGTAGCTTGCTAGTGTTATTGTTAATATTTATATTTTTGCTTCTAGTAGCTGCCATTCTCATAAAGTTGATTAACCGAATAAAACAGAACATGTCTTCATCACAAGGAGAATCACAAACCAAATTATCCGAGCTGTCTGCTGGAAAATCTTGTTTTTAACTTTAAAGCTTGATATCCTCAGCCAGTAAAGAAGTTGATAAAGGGAGAAGGTTAGAGGGATGGGTCCATTATCAACCGAGTTATGAACCGAAAAAAAATGAAATTAGTGAATTCAACTTGTATAAGTTTAAGGCTTATATGTTGTTGTTTACTACTTTACTTTCACTGGACACTCTGAAGATGGTGTTTGACCAAACTTGTTGGAGAAGAAAAACTGTTTTTGAGTAGAAGCAAAAGCTATTTTTGAGAAAATAAAAAAATATGCTCTCGATTTTTGAATAGCACTTCTAAGAAAATATATGTGGAAACACTTTGTGATAGCTTGACCAGATACTAATTGCTGCTCAAGTATTTTTTTAGATCGGTTAGCATAACACAAATTGTTTCTCGTCAAAAGTACTTTTTTGTAAGAACACTTCCCAAAATTAGCTGATTTTAGAAGCTTGGCCAAATTGGCTATTATAAGCATACTAATTATTCTATATTCACTTTTCTTATGCGTCACCTGTTGGTTCACTCGTTAACAATGTTATGCTATTTCACTGTAACCAACCTCAGGTTTTTTTATATTTTTCTTAGGCAGGTCTTTTTGGCAACATGCAAAACTTATACGAGACAGTGAAGAAGGCGCAAAATGTGGTTCAAGTTGAGGCAGTGCGAGTACAAAAAGAGCTTGCTTTGTATGTTTCTAATAGTGCACTTTATAATACGTTTTTAACCTTTATGTGAGCTAATCTTTAAGAGAATGCCACATAAATATTCATTTTTGGTGGTTTGTGTTTCCAGAGCAGAGTTTGATGGATACTGTGAAGGTGAACTAATCAAGGTATGTTCTTTTCTTGTTTTATTTTGGTGTCATCTAACTGAAGAGATCACTTCTGATCGAATGGATGTACTAATTCGACTATTCCAGAAGTTAAGATGCAATCTGGGAACCAATCTTAGAAAAATGACAAAAATGGTCCCTTTATGTTTAAGTTTAGGTTCAATATAGTCCCTTGAAACAGTTTTGCTCTTTTTAGTTTTGCCACTTTTAGTCCCCATCTAATATTTGTGGAGCTTTGTTGGTTAGATTTGATGGTATGAAAAAATGGACATTAGTGGGAACTCACGTTTAATGAAACAATTTCTTAGTTTCTGCTATTTGATTTATTTATTTCTAGAGTCTGCTACAACATTTTGAGGTAATTTCTGATATACTTTTTATTGTCTAGTGCAATTCTCAGTGTTGCGTGAATTTGATTAGACTTTCTTGATGTTTATGATTTAAAAAAATACTTCTACTGTTTCCGTCAAATCTATTGAACATTAATATTTGACAGGGACTAAAGTATTTAACTTTTGGCAAATTTAAATTACCAAAACTGTCCAATGCAACTTAATGACTATGAACCTACCCTCAAACAGAAGGGAACATTTTTGTTATTTTCTCGCCAATTTACTTGGCAACTTAAGTGTTGGGTCTGCACACAATTGAACAACCTATGTTCTAGACGTAGAATGCTCAGCCTTGGCCTAGTAGTTCTCGTGTCATTTTTGTCAAAACCTTCGATTACTAAGGCACAGTTGCTGTAGACAGACCTTGATAAGTAGAAAATGTGGAGAAATTCCATTTCGATACACTTTATGGGAACTTATAAATATTTACATCATTTGCAGGTAACACTGTCTGGAAATCAGCAGCCGATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAAGTGAGTATATATTGCATAGATCATCTGAGTTATGTACTTGTCTTATTTGACCTGTCCGTCAAATAACATTTCACTATAACAATCATGCTTTCTGCAAAAGCCGATCTATCATGTTATGTTATATTGTATAGTTAATCAGACCTAGCTAAACTTGGAACGACATAGATCAAAGGGTCGTTCATTAGCCCTAGTAGTCAAATACAGGAAAAAGAGGGATGGATTTCGACCTTGCTTTTTTAGGTCTCAGGCTAGCTTTTGATTTATATCACGCTTAGGCTTTTTAGAGTGGCACGGCTGCTTTGAGCTAGTATCATATTATATGTTCTCTATAGCAGCCAAACAATATCGGAACAAATGATGTTTTTAAGATGCTGACCATACATGACCCCCCAAAACAACATGCCAGCGTGAAGGATGTTTTACCTTCTGTAGTCCCATTTTTCTTTAGTCTGTGGCTATTTTTAGTTTGACAGTACTCTAGCCAAGTCGTTTCTTTTTCTTTACTAGTGAAAGGTGTCTGTAATCGGTAGTAAAATCCCACATTTCAAGAAGAAATTTTTTGGCCAGGGATCTGAGTTGTGTCTTTTGATTGGTCTGTGCATTGTGGCTTTCGTCTTCCAGGGAGCCCTGCGGAGTATCACAATATATGAAGATTTGTGCCGAATCCTTAAAGGGCCTTTACTATTTTTCTTGTGCAGAAACTCTCACTTCTGATTACAGAGGCATACAAGGATGCGCATCAGAAAAGTGTACTGGTAAGAACCTCAAACTTGTTCCGTTTTACGTGACACTCTCTCCTTTTTATTCTGTTTTATATTTAGAAACAATACGACTTAAAACTTTCACCCTTCATGACATGATTTTAATACCACAAAAACGTCATGACATGACTGACATGCTTAAGATCACAAATTCCAAAAGTCTTTCTTATTTCCTTTAACATCGTCTCCTAAACTCTGTCCTATGTCAAACCCTTTCACTTAAGGGGCTTAACGAAGGTTCTCTATCTTCCAAAAGTCTTGGTTGACAGAGTTACTTGATACCTATATTGCATGAACTCTTCAATAATGTCGATGAGTACCTATCACGAGCGTGCAACACCATTTTAGGAGAGTTAGAGCAACATAGTAAGGTACTTGTCTTAATGGGAAGTAGCAGGTACCACAACAAGCTTGACTCGAGCACCACAATTATAAGAAAAAACAACGATTCACTATGTATACCCTAATGTGCCACGAGCCTCCGACCTAACAATTGGACGTAAAGGCACTTCATCGACTGAGTAATCCTCATTCGTGAAGGATTTCATGTAGGATCATATTTTCCGATATTTACTAGTACTCGTATCTTCTTGTTATTTTGTTGTCGTTATTTTTTCAGGCAATGAAGGAAAGAATGAGTGATCTTGCTCAGAGTTTGGGAATGCCAGCAGGCCTTGGTGAAGGATTCAAACAGTAAAAAAAAATTATCTTCATGAGTTTCAATTTTGTAAGCTAGCAGACACTAAGTTTATTTTTGCATTAAAATTATGAATACAATT</genome_strand>
        <mrna_strand>TAATTTTGTGGTGAAAAAATGGCGTCTACAAGTGCTTTCACAGCTGGGATTTCAAATCTTCATAGCTTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCGTGTCCTAATGCAAATCAAGTTGGTATGTGGACTTTATCAAGACCTGGTTGTCGAAAGGTTTTAGATAATCCCAGACCTCTGCAAATATGTTCTCTGTTTGGAGGAAAAAAGGACAATAATGAGCAGAACAACGATGCTCCTTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTCTTTTTGGCAACATGCAAAACTTATACGAGACAGTGAAGAAGGCGCAAAATGTGGTTCAAGTTGAGGCAGTGCGAGTACAAAAAGAGCTTGCTTT..........................................................................................................AGCAGAGTTTGATGGATACTGTGAAGGTGAACTAATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTGTCTGGAAATCAGCAGCCGATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCTCACTTCTGATTACAGAGGCATACAAGGATGCGCATCAGAAAAGTGTACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGAAGGAAAGAATGAGTGATCTTGCTCAGAGTTTGGGAATGCCAGCAGGCCTTGGTGAAGGATTCAAACAGT-AAAAAAAATTATCTTCATGAGTTTCAATTTTGTAAGCTAGCAGACACTAAGTTTATTTTTGCATTAAAATTATGAATACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U576601" ref_strand="+" ref_description="SGN-U576601 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|157343175|emb|CAO66664.1| (e_value=0) unnamed; (*ATH) AT4G30600.1 (e_value=0)  Symbol: None | signal recognition particle receptor alpha subunit family protein, similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP:P08240) (Homo sapiens}; similar to Signal recognition p... ; (*SWP) sp|Q9U5L1|SRPR_DROME (e_value=1e-107) Signal recognition particle receptor subunit alpha homolog OS=Drosophila melanogaster GN=Gtp-bp; ">
      <seq>ggggtaccaggagctgcatacactcttaaatggacgtttcacaatgatctggggcttgtgtttgttgctgtgtatcagaaaattcttcatctattgtatgtggatgaattgctttctatggttaagcaggaattttcagagatttatgacccaaaaagaactgtctacaatgaatttgacaatgtatttcagcagcttaggaaggaggccgaggcacgtgctgaggaaatgaagaaatcgaagcaggtgagcaagcctgtaaaccataatcttggtaagaagcaaggacaagtgcagaagggcattatggatggaggcaatcaaaaaaagagtggtgctgaatcaggaaatgatagtggagatggtgataaagtaaatagtcgtgccatggaaaatggcaatgggcgttctaaagttagtaagggaaatggagtagtgcaggctaacggtaaagagaacagaagttctgattctggggcttttgatgtaaataagctacagaagcttagggctaaaggtggaaagaaaaccgataccattgtaaaggattccaaggcagagcctacaaaaaaggcaaagaagaacagagtctgggatgattcacctaaggagtcgaaattggatttcacggatcctatgtgtgagaatgcaaatggaaatacagcagttgtagaagcagttcaaggtgagagtatgatggacaaagaggagattgtgagtagtgatagtgagactgaggaggatgaagagccagggaaagacagcaaggtcgaggcaaagaagaaaggttggttctcatccatgttccagagtatcgcaggaaaggcaaatttggacaaagctgacttagagccagctttaaaagctcttaaggacaggctgatgaccaagaatgtggccgaagaaattgctgaaaagctttgtgaatcagtggcagcaagtttggagggtaaaaagcttggctcatttacaagaatttcttcaacagttcaggcagcaatggaggaggcccttgttcggatcttaactcctaaacgttccattgatatcttgagggatgttcatgccgcaaaggaacaggggaaaccatatgttgtggttttcgtaggagtaaatggggttggaaagtctaccaatcttgcgaaggttgcttattggcttcagcagcacaaggtcaatgttatgatggctgcgtgtgacacatttcgatctggagctgtagagcagctccgtactcatgctcgaagacttcaggtccccatatttgagaagggctatgagaaggatcctgctattgttgccaaggaagcaatccaggaggctaatagaaatggttcagatgtcgttcttgttgatacagctggtcgaatgcaggataatgaaccactgatgcgagcactttcgaagcttatatatgtgaacagtccagatctgatcctttttgttggtgaggcacttgttggaaatgacgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcaccctcaccaaatccaagattgattgatggaattctccttaccaagtttgacaccattgatgataaggtgggagcagcgttgtccatggtttacatatctggagccccggtcatgtttgtgggatgtggtcagtcctacacagacttgaagaagctgaatgtcaagtccatagtgaagacactactcaaatgagaacacacaatctgcctcttacatttcagtttggcctttaatgtctgtttaagaagtgttgaacactttgtatgttgctgcttcagttgtgtttgtaactttgtattctctcatctgtgatttcccagtattttgattttgaaggtgaatcgtgtgacttaattggtgtatattagttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="85623" stop="89830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85920" g_stop="86731" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="812" r_length="812" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86732" i_stop="87053" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87054" g_stop="87138" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="897" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87139" i_stop="87269" i_length="131">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87270" g_stop="87365" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="898" r_stop="993" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87366" i_stop="87799" i_length="434">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87800" g_stop="87952" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="994" r_stop="1146" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88035" g_stop="88142" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1147" r_stop="1254" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88243" g_stop="88362" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1255" r_stop="1374" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88562" g_stop="88687" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1375" r_stop="1500" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1501" r_stop="1584" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="89222" g_stop="89525" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1585" r_stop="1889" r_length="305" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1890" polyA_stop="1910"/>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-U576601" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1888</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85920" e_stop="86731"/>
          <exon e_start="87054" e_stop="87138"/>
          <exon e_start="87270" e_stop="87365"/>
          <exon e_start="87800" e_stop="87952"/>
          <exon e_start="88035" e_stop="88142"/>
          <exon e_start="88243" e_stop="88362"/>
          <exon e_start="88562" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTACCAGGAGCTGCATACACTCTTAAATGGACGTTTCACAATGATCTGGGGCTTGTGTTTGTTGCTGTGTATCAGAAAATTCTTCATCTATTGTATGTGGATGAATTGCTTTCTATGGTTAAGCAGGAATTCTCAGAGATTTATGACCCAAAAAGAACTGTCTACAATGAATTTGACAATGTATTTCAGCAGCTTAGGAAGGAGGCCGAGGCACGTGCTGAGGAAATGAAGAAATCGAAGCAGGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCTGAATCAGGAAATGATAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGTTAGTAAGGGAAATGGAGTAGTGCAGGCTAACGGTAAAGAGAACAGAAGTTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAGGTAATTCTCCTGATTCACGAAAATAAATGAGCATTTTTATGAAAATTAGTTAACGAAATGGCTGATATTTCTATCATATAGTCCTCACAAAATGGATCAATGGGTATATATAGATCAGAAAGATTTTCACCCACGTCCGTTATTAATCACCATGAAATTTGCCTAATTTGATTATCAGACACTAAGGAAGATAATTGGTTTGGGGTGTTATGTGAAAATTGATAAATATTCAAGAGAAATGGGAAAAAAAATTACTTCCAAGATAATGGATCTTTCTAACTGTTAAATGCTGAGCATAACCTGGTTGCTGTTGTGTCTCCAGTATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTGGTAAGTTTACAGTTGCTTTACTCTTACTACCCGCGTTCGTTCTCCTTAACCACCTTCCCAATTGATGACCATGTTTCTATCAGTTGTTTTCATTCTATAATTGGTTGATGAGTGTTACACATGTCTTACAGGCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAGGTAAGAGAGTTGGGACCTTCATTCATTTACAGAGTAGAGTACTTAGTTGCTTTAAAGTACTTGCACTTGGAGGAACAATGCCATTTAAGAAGTGTTCAAATCCAAGGTGTTTGAAAGCATACCCCTCAACATCTTCCAGGCTTTAAAGATAAAAGGAAGAGTTAAAATGGAAAGGTGTTGCAAAGTTGAATTTTTGTATGCCAAAACTTGAAAAATTCTTTTCATCTATTTTTTTGCTTTTTATAGTCTGAACATTTCTTGAGCCAAGGGTTTTTCATAAACAATCTCTCTACCTGCCAAGGTAGGGGTAAGGTTTGTGTACACCGCCACACTTTACCCTCCCCAAACCCCACTTGTGGGACTATACTGGGTATGGTGTTGTTGTTGGCATAGTCTCAACATACTAATATGGGGTATTGAATTGATCAAACCAGGCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAGGTAAACTAAGATTGCTCTTTTTTCTTTTACTTCAAGGGCCTTGTATATCTTCTCATGGGGTTCTTTACATGTTCTGCTGCAGGTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAGGTATGCCATGATTGGAAATTTTGTACTTGATCGAATTTTTGGTCTTCGCTGGGGGAGAGATTGCACAAGTTAAGTTTCTGACATTGTATTGTCTTAACAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAGGTATGATTGAATTTCTTAGCAGTTTTAGGAAGTCCCTGTATGAGCACTATACACAGAATAATAGTAGAATATTGTCTTGGATACTAGTAGGGGTCTCTATTGTTAGTTTCAGCATCAACCCTTGCAAGCTGAGATACTCTTGTTTCTTGTTTTATCTTTCACTTCCTTCAAATTCATGCACAACTGTCATATTCCACAGGATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAATCTGCCTC-TACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTAATTGGTGTATATTAGTTT</genome_strand>
        <mrna_strand>GGGGTACCAGGAGCTGCATACACTCTTAAATGGACGTTTCACAATGATCTGGGGCTTGTGTTTGTTGCTGTGTATCAGAAAATTCTTCATCTATTGTATGTGGATGAATTGCTTTCTATGGTTAAGCAGGAATTTTCAGAGATTTATGACCCAAAAAGAACTGTCTACAATGAATTTGACAATGTATTTCAGCAGCTTAGGAAGGAGGCCGAGGCACGTGCTGAGGAAATGAAGAAATCGAAGCAGGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCTGAATCAGGAAATGATAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGTTAGTAAGGGAAATGGAGTAGTGCAGGCTAACGGTAAAGAGAACAGAAGTTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAG..................................................................................................................................................................................................................................................................................................................................TATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTG...................................................................................................................................GCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAG..................................................................................GTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAG....................................................................................................GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAG.......................................................................................................................................................................................................GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCCTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACACTACTCAAATGAGAACACACAATCTGCCTCTTACATTTCAGTTTGGCCTTTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTATGTTGCTGCTTCAGTTGTGTTTGTAACTTTGTATTCTCTCATCTGTGATTTCCCAGTATTTTGATTTTGAAGGTGAATCGTGTGACTTAATTGGTGTATATTAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U576600" ref_strand="-" ref_description="SGN-U576600 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147768335|emb|CAN66971.1| (e_value=2e-37) hypothetical; (*ATH) AT4G30600.1 (e_value=5e-39)  Symbol: None | signal recognition particle receptor alpha subunit family protein, similar to Signal recognition particle receptor alpha subunit (SR-alpha) (Docking protein alpha) (DP-alpha) (SP:P08240) (Homo sapiens}; similar to Signal recognition p... ; (*SWP) sp|Q54ZR7|SRPR_DICDI (e_value=5e-23) Signal recognition particle receptor subunit alpha OS=Dictyostelium discoideum GN=srpr; ">
      <seq>gaagcttatatatgtgacaagtccagatctgatcctttttgttggtgaggcacttgttggaaatgacgctgttgatcagttatcaaagttcaaccagaaactaggtgacctttcagcctccccaaatccaagattgattgatggaattctcccttaccaaggtttgacaccattgatgataaggtgggagcagcgttgtccatggtttacatatctggagccccggtcatgtttgtgggatgtggtcagtcttacacagacttgaagaagctgaatgtcaagtccatagtgaagaccctcctcaaatgagaacacacaatctgcctctacatttcagtttggcttgtaatgtctgtttaagaagtgttgaacactttgtctgttgctgcttcagttctgtttgtaactctgtattcactcatctgtgattttatactattttgattttgaaggtgaatcatttgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="88291" stop="89806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88591" g_stop="88687" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88768" g_stop="88851" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="183" r_length="86" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89222" g_stop="89506" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="468" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-U576600" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576600" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88591" e_stop="88687"/>
          <exon e_start="88768" e_stop="88851"/>
          <exon e_start="89222" e_stop="89506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAGGTTTGCCTATAATGGTGATGATAACTTCCCCATAATTTTAACGTTTGTTCCATAATTGACACATTCTCTTATATCTGCAGAAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCT-CCTTACCAA-GTTTGACACCATTGATGATAAGGTACACACAGTCATGGTCTTTTCGCATTAACAAGTTTGATGCCAGCCTATGCTACTTTACCGAGTTAATGTTTTTTCTTCCTACTTATTTGATTATCATTCTGATATCAACAATCAAATGTCAAAATATATTTCAGTCACGTTAGCATGTTTACTTTAGGTCCTATGATTTCTACTCATATCAGATATATACCGGTAGAAAATAGAGAGGATTTCTAGTACATTTATCTACCTTATTTTTGAACGATATTGGCTTGAGACAACCTTAAATGGAGCGACAGGATTCACATAGTCGATTCCCACTTTGAGTTTGAAATCAAAGTATAGTAGTTAGTGTTGTTGTGTATTCTTATAGTCAGCGTTTTCTGCAGGTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAATCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTT</genome_strand>
        <mrna_strand>GAAGCTTATATATGTGACAAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAG................................................................................AAACTAGGTGACCTTTCAGCCTCCCCAAATCCAAGATTGATTGATGGAATTCTCCCTTACCAAGGTTTGACACCATTGATGATAAG..................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAATCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U571285" ref_strand="+" ref_description="SGN-U571285 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|157343181|emb|CAO66670.1| (e_value=4e-127) unnamed; (*ATH) AT5G57940.2 (e_value=3e-116)  Symbol: None | cyclic nucleotide-regulated ion channel / cyclic nucleotide-gated channel (CNGC5), identical to cyclic nucleotide and calmodulin-regulated ion channel (cngc5) GI:4581205 from (Arabidopsis thaliana) | chr5:23473814-23477839 FORWARD | A... ; (*SWP) sp|Q8RWS9|CNGC5_ARATH (e_value=3e-115) Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5; ">
      <seq>gattatggttcgaagtcccaagatctggatgggcagcaaaaaaaaagtttgtaagataacatcttaccctcgctgtctttgaagattgtttttgacactcttttggttggaagatacatttttctattaactgaagataacacctaaaatgttaatgtttagcatttaagcaatttatggctgatggacaggccggcttgacatgaacaatgttggatgactttgattgcggactaacctcagcgtcaacaccgtagctgcaaataaatgtggcttcatcatggaagctttaagacattctggccatgcaactagcagcccgtcaaggtcttttaagagaggaatgagaaaaggatctgaaggactaaagtcgattggtcgatcacttggatttggtgtctctaaggcagtatttcctgaagatctgaaagtttcagagaagaagatttttgatcctcaagataaattccttctcttgtggaataagctgtttgttatatcatgcattctggccgtgtctgttgatccgttgtttttctaccttccagttttcgatgacaagtcaaattgccttcagattgatcgaaagctagctgtgatagccacaactcttcgtaccgttgtcgatgctttctatcttattcacatggcacttcagtttcgtacagcttatattgcaccatcctctcgagtttttggaaggggtgaactagtgatagatcctggacagattgctaaaagatacttgcgatcctattttatcatcgatcttcttgctgtggttcccttgcctcagattgtagctgggagattcctgcagagatcgacaggttctgatgttctggctaccaaacaagctttgctctatatcattttgctccagtatatccccagatttgtccgagttatacccttaacgtcagaattgaaaagaactactggtgtcttcgctgaaactgcatgggctggtgctgcatcctatttgctgttgtacatgcttgctagtcacatagttggctcgttctggtatttgctttctgtggaacgctatgatacatgctgggaaagagcttgtagtcataacacaacatgccaaactgatttcttggactgcggcaatccaaggatgacaaggtattatggttggaacaatatcaatgaatccggttttaatggaacatggccccctaacggggaccatccaccctttgaatttggaattttccccccaggtttggccttcaggataattttctccatgaaagttgggaacaaatattggtactggttgggggggggaatcccaaattttaataaccctgggacaggacttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="96512" stop="100141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96866" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96867" i_stop="97052" i_length="186">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97053" g_stop="97208" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="211" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97209" i_stop="97289" i_length="81">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97290" g_stop="97874" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="796" r_length="585" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97875" i_stop="98450" i_length="576">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98451" g_stop="98663" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="1009" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98664" i_stop="99537" i_length="874">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99538" g_stop="99842" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1010" r_stop="1314" r_length="305" r_score="0.849"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-U571285" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>1314</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96866"/>
          <exon e_start="97053" e_stop="97208"/>
          <exon e_start="97290" e_stop="97874"/>
          <exon e_start="98451" e_stop="98663"/>
          <exon e_start="99538" e_stop="99842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATGGTTCGAAGTCCCAAGATCTGGATGGGCAGCAAAAAAAAAGTTTGTAAGGTACTAATGATCTTTTATCAAGGTTATTAAGCTTTTATTCAGTCCACTTCTTCCGGCATATATTTTGGGGGTTGTATGTTCTTAATGTGAAAATGGAAGTCGGAGCTATGGGCTAAATACAATGTGTTATATGGTGAACTGTTGGAAATTTTGTTGTAAATCATTGGACTCTAGTTTTTTTTGCAGATAACATCTTACCCTCGCTGTCTTTGAAGATTGTTTTTGACACTCTTTTGGTTGGAAGATACATTTTTCTATTAACTGAAGATAACACCTAAAATGTTAATGTTTAGCATTTAAGCAATTTATGGCTGATGGACAGGGCGGCTTGACATGAACAATGTATTTATGGCCATTTGTTGAGTCATTGATGAATTCTCCTCGAGTATCCCTACCTTATAATGCTTCTTTACATTTTTTTAGGTTGGATGACTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTCTGGCCGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTCGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCACCATCCTCTCGAGTTTTTGGAAGGGGTGAACTAGTGATAGATCCTGGACAGATTGCTAAAAGATACTTGCGATCCTATTTTATCATCGATCTTCTTGCTGTGGTTCCCTTGCCTCAGGTTTAAAGAAATGCTTTATTTTTTTTTTATGTCTCTCTACATTGAAACTTTATTTCCTTTAGTAAACTACCATGGCTCTTATGATCACTGACCTTATACTCCCTCCAACCTAATTTGTGTGGCACCATTTAACTTGACACATAATTTAAGAAAGAAAGGTAGACCTTTGAAATTTGTGGTCCAAAACAAACCTTAGCCATTTTTCTGGCTATAATTTACTATAAATCATTTTATTAAGGGTAAGAGGAGAATTTTAAAGCTATTCTTTCTAATTATAGAAAGGTGACGATCTGCTTGGGACGGACCAAAAAGGGAAGTGTGCCACAAAATGATTGTCTCCTTCTTGTTATATCATGCTTTCACTTTTCAAGGTTCTTTCTTCTTACTGTCCTAAATGGGGTTGAGTGGGATTTTCATCCCGATTCTCTACCTTTCTGTGTTACGATACTGTCAATGGATGTTTTGATATGCTTTGCCTTTTTATTAAGTCATTTGTTTATGAATCAGCCCATACAGCTCTTTTGATGAATGGCCTATCGTCATTCACTTTGCTTTTCCTTTTATGGATCTATACAGATTGTAGCTGGGAGATTCCTGCAGAGATCGACAGGTTCTGATGTTCTGGCTACCAAACAAGCTTTGCTCTATATCATTTTGCTCCAGTATATCCCCAGATTTGTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCACGTAAGCTACTTATTAAGTTGCCGAAATGTTTGCTATCTGTTCTGCTAAGATAACTGTCCATTGCATTGTTTTGAAATGTAAATCTTCTTTTTTTCATTGGCATAATACATAAATGTGCCCTTTAATTTGGCTTCAAATCACATTCATGCCCTTCAACTTTGGATGTGCACAATTAGACTACTTAAACTTGTATAAAGTTGAACAAATAGACACACATGTCCTACATGTCATTTTTTGTCTTACGTGGTGTTCTACGTGTGTTGTGCCATGTAGGACTCATGTGTTTATTTATTTAAAAGTTGGATAGTTAAAGTGCCTATTTGTGCATTATGAAAGTTAGAGGTCAAAGTTAAAATTTATAGCCAAGTTTAGGGTTCAATATATGTATTATACCATTTTCTTTTGTGTAAAATTCTCTTCTTTGCGGAAGTGGAAGTTCTGGTTTCCTGCTGTATTCTGTCATTTTGCAGATCATTATGAGGGAAAATCTTTATTAATATGAAATCTCTGTTTATAGCATCTTCATCGTCTTTTAGATGGATTGAAGCTAAAACCGCATCCGTAAAGTAAAGTTAATTTGTAAATGAAACAATTATCTGAAAATAGGTGAATAACTTATCAACAACTATACATGTTGTATTGGTTTAAAAGAAATGCAGTGTACTCTCCGTTTTCTGGTTCAATTGCATGTATATGGAGTTTGCTGTTTCATTTTCCAACTAGAAAATGTTCACTTGTTCTGCAAAGCATATGCAAATTAGATGGTTTTTCGTTGAAATTTCGGATTGCTCATCTTTGCTAGAACATCGCAAAGGTTATCTCAAGGTGGAATTTCTGATTGTTCCTTGCTTCCATTCTCGTTGGTTCTTTTCAGATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTAGTCATAACACAACATGCCAAACTGATTTCTTGTACTGCGGCAATCAAGGCATGACAGGGTATAATGCTTGGAGCAATATCAGTGAATCGGTTTTAAATGGAGCATGCCCTCGTAGCGGTGACAATCCACCATTTGATTTTGGAATTTT-CGCGCAGGCTTTGTCATCAGGCATAGTTTTCTCAATGAAGTTTGTGACTAAATATTGCTACTGTTTGTGGTGGGGACTCCAGAATTTAAG</genome_strand>
        <mrna_strand>GATTATGGTTCGAAGTCCCAAGATCTGGATGGGCAGCAAAAAAAAAGTTTGTAAG..........................................................................................................................................................................................ATAACATCTTACCCTCGCTGTCTTTGAAGATTGTTTTTGACACTCTTTTGGTTGGAAGATACATTTTTCTATTAACTGAAGATAACACCTAAAATGTTAATGTTTAGCATTTAAGCAATTTATGGCTGATGGACAGGCCGGCTTGACATGAACAAT.................................................................................GTTGGATGACTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTCTGGCCGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTCGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCACCATCCTCTCGAGTTTTTGGAAGGGGTGAACTAGTGATAGATCCTGGACAGATTGCTAAAAGATACTTGCGATCCTATTTTATCATCGATCTTCTTGCTGTGGTTCCCTTGCCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAGCTGGGAGATTCCTGCAGAGATCGACAGGTTCTGATGTTCTGGCTACCAAACAAGCTTTGCTCTATATCATTTTGCTCCAGTATATCCCCAGATTTGTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTAGTCATAACACAACATGCCAAACTGATTTCTTGGACTGCGGCAATCCAAGGATGACAAGGTATTATGGTTGGAACAATATCAATGAATCCGGTTTTAATGGAACATGGCCCCCTAACGGGGACCATCCACCCTTTGAATTTGGAATTTTCCCCCCAGGTTTGGCCTTCAGG-ATAATTTTCTCCATGAAAGTTGGGAACAAATATTGGTACTGGTTGGGGGGGGGAATCCCAAATTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U594600" ref_strand="+" ref_description="SGN-U594600 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157343181|emb|CAO66670.1| (e_value=1e-49) unnamed; (*ATH) AT5G57940.1 (e_value=1e-50)  Symbol: None | cyclic nucleotide-regulated ion channel / cyclic nucleotide-gated channel (CNGC5), identical to cyclic nucleotide and calmodulin-regulated ion channel (cngc5) GI:4581205 from (Arabidopsis thaliana) | chr5:23473893-23477839 FORWARD | A... ; (*SWP) sp|Q8RWS9|CNGC5_ARATH (e_value=1e-49) Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5; ">
      <seq>ttgaccgagttatacccttaacgtcagaattgaaaagaactactggtgtcttcgctgaaactgcatgggctggtgctgcatcctatttgctgttgtacatgcttgctagtcacatagttggctcgttctggtatttgctttctgtggaacgctatgatacatgctgggaaagagcttgttgtcataacacaacatgccaaactgatttcttgtactgcggcattcaaggcatgacagggtataatgcttggagcaatatcagagaatcggttttaaatggagcatgccctcgtagcggtgacaatacaccatttgattttggaattggcgcgcaggctttgtcatcaggcatagttttctcaatgaagattgtgactaaatattgctactgtttgtggtggggactccagaatttaagtacccttggacagggacgttaaactagcacatttcctggggagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="98251" stop="101515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98551" g_stop="98663" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98664" i_stop="99537" i_length="874">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.885" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99538" g_stop="99842" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="418" r_length="305" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99843" i_stop="101170" i_length="1328">
            <donor d_prob="0.754" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101171" g_stop="101215" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="463" r_length="45" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-U594600" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98551" e_stop="98663"/>
          <exon e_start="99538" e_stop="99842"/>
          <exon e_start="101171" e_stop="101215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCACGTAAGCTACTTATTAAGTTGCCGAAATGTTTGCTATCTGTTCTGCTAAGATAACTGTCCATTGCATTGTTTTGAAATGTAAATCTTCTTTTTTTCATTGGCATAATACATAAATGTGCCCTTTAATTTGGCTTCAAATCACATTCATGCCCTTCAACTTTGGATGTGCACAATTAGACTACTTAAACTTGTATAAAGTTGAACAAATAGACACACATGTCCTACATGTCATTTTTTGTCTTACGTGGTGTTCTACGTGTGTTGTGCCATGTAGGACTCATGTGTTTATTTATTTAAAAGTTGGATAGTTAAAGTGCCTATTTGTGCATTATGAAAGTTAGAGGTCAAAGTTAAAATTTATAGCCAAGTTTAGGGTTCAATATATGTATTATACCATTTTCTTTTGTGTAAAATTCTCTTCTTTGCGGAAGTGGAAGTTCTGGTTTCCTGCTGTATTCTGTCATTTTGCAGATCATTATGAGGGAAAATCTTTATTAATATGAAATCTCTGTTTATAGCATCTTCATCGTCTTTTAGATGGATTGAAGCTAAAACCGCATCCGTAAAGTAAAGTTAATTTGTAAATGAAACAATTATCTGAAAATAGGTGAATAACTTATCAACAACTATACATGTTGTATTGGTTTAAAAGAAATGCAGTGTACTCTCCGTTTTCTGGTTCAATTGCATGTATATGGAGTTTGCTGTTTCATTTTCCAACTAGAAAATGTTCACTTGTTCTGCAAAGCATATGCAAATTAGATGGTTTTTCGTTGAAATTTCGGATTGCTCATCTTTGCTAGAACATCGCAAAGGTTATCTCAAGGTGGAATTTCTGATTGTTCCTTGCTTCCATTCTCGTTGGTTCTTTTCAGATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTAGTCATAACACAACATGCCAAACTGATTTCTTGTACTGCGGCAATCAAGGCATGACAGGGTATAATGCTTGGAGCAATATCAGTGAATCGGTTTTAAATGGAGCATGCCCTCGTAGCGGTGACAATCCACCATTTGATTTTGGAATTTTCGCGCAGGCTTTGTCATCAGGCATAGTTTTCTCAATGAAGTTTGTGACTAAATATTGCTACTGTTTGTGGTGGGGACTCCAGAATTTAAGGTGGCTTTACTCTTTAACATTATTCTTATCTCATTTGCTTTAGTCTCTCGTATCTTTCAGGGATTATGCCTAAGGAGTGAAAAACAAAGCATTAAAATTTTCCATCACATTACTACTAAATCCTTTTGTTGTTTGAAGTGTACATTTATGCCTAATTACTTCATTGTAGTTTACCATTTGCTCAACTATATGTTGATTAAACGTTATTTGAAAGTTGTATGAAAAGTCTGCATGCACTAGGTTTTGCATATTATGACTATTTCCTTTTGGCACTTTGTCATGCTCTCTATAGTATTTTGCCATAGCTTTTCCACTTCCGCCTTTCTTTTCGAACCGTATTGAATTGTTTTTCCTTGAGCCAATCTCTACATCCCAAGGTAGAGGTAATGTACACTTACACTCTACCCCTCCCCTATTCCCACTCGTCGGATTACACTGAATATGTTGTTGTTGCTGCTTGTTGGCGCTCACTTAGGTTCTATTCCTACCTGATAGCCTATAATTCAACGTGAACAAGTTTTTTTTTTTTATGTTAAGGTAACAAGATTATAGGGTGGTTATTAAAAATCAAAACCATATGGCTTTGCAGGAGTTACAGGGAGATATAAGACAAGCATCCATAGGTACTTTGGTCTAGTTGTAACTTGTATAAGTAAGAGCTCAACTTGTGATGTGTAAATTTGGTGCACGTTACAGGTTCAAATCCTACCGCAAATAAAAGCCTGGTATTTAAGTAGAAAACGATGGAGGGGAGAACCCATTATCCACCGAGTTTCGAACTGTGCACCAATGGCCTGCAGAGATTTATCTGTTACTAAGAAAATGTCAAGTTCCTAATTCAATTGTTCCAGAGTTCCAGTGTGACCATACTTTTTCCTGTTGAATACGAGAAGAGAAATTTCCTCCTAATCGTGTGCTATCATCGTATCTAAATGATTAATATTCCGATGGCCTTTTCGGTTCATATTGTCTATCAACTAATTGGTTTACGGAGGAGTAGTGTTTTCCTGTCACTGAATCATGACAGCCGATAATTAAATGTGAACACTAATTCAATATATTCCAGTATTATATGCTTCTTTTGGTTCATATTGTCTATTCACTATTTGGTTAGACCAATATTAGTTGTAGGATCTTCTTTTCGTTTTGTTCTTTACCCGGAGGACTGAAGAGGAAAAGAAGAATCGACTAAGCTGGAGTTCGGAAAACTAATTAAATGAATATTTACGTTATTTTCTTTTCATATGCTAAGGTATATCAATTGTTAATAAACCTTTTGGTGAACTTGTTCTAATAGCATTTCTTTTTTTCTTGTTTTGCTTGTGTAGTACCCTTGGACAGGGACTTCAAACTAGCACATATCCTGGGGAGTC</genome_strand>
        <mrna_strand>TTGACCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTTGTCATAACACAACATGCCAAACTGATTTCTTGTACTGCGGCATTCAAGGCATGACAGGGTATAATGCTTGGAGCAATATCAGAGAATCGGTTTTAAATGGAGCATGCCCTCGTAGCGGTGACAATACACCATTTGATTTTGGAATTGGCGCGCAGGCTTTGTCATCAGGCATAGTTTTCTCAATGAAGATTGTGACTAAATATTGCTACTGTTTGTGGTGGGGACTCCAGAATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCTTGGACAGGGACGTTAAACTAGCACATTTCCTGGGGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U571286" ref_strand="+" ref_description="SGN-U571286 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|15234769|ref|NP_194785.1| (e_value=6e-165) cyclic nucleotide-regulated ion channel, putative (CNGC9) [Arabidopsis thaliana]; (*ATH) AT4G30560.1 (e_value=4e-167) | Symbol: None | cyclic nucleotide-regulated ion channel, putative, similar to cyclic nucleotide and calmodulin-regulated ion channel cngc6 GI:4581207 from (Arabidopsis thaliana) | chr4:14926980-14929687 REVERSE | Aliases: F17I23.100, F17I23_100; (*SWP) sp|Q9M0A4|CNGC9_ARATH (e_value=4e-166) Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9; ">
      <seq>gtcggttttaaatggagcatgccctcgtagcggtgacaatccaccatttgattttggaattttcgcgcaggctttgtcatcaggcatagttttctcaatgaagtttgtgactaaatattgctactgtttgtggtggggactccagaatttaagtacccttggacagggacttcaaactagcacatatcctggggagtctttattctctattgcactagcgatactcgggctcattctctttgcattgctgattggtaacatgcagacataccttcagtcacttactattcgacttgaagagatgagagttagaaggcgtgactcggaacaatggatgcatcacagattgcttccacaagaacttcgagaacgggtaaggggctatgatcagtacaagtggcaagaaacacgtggagtggatgaagaaaatatagttcagaatttgcccaaggatctcaggagggatatcaaacgtcatctttgtctggctctagtgaagagggtgcctctatttgcaaatatggaggagagattgcttgatgcaatttgtgagcatctaaaaccttgtttgtacatcgagaacacttaccttgttcgagaaggagatccagtggatgaaatgctctttgtgatacgagggcgccttgagagtgtgacaactgatggtgggagaagcggtttcttcaaccgcagcttgttaaaagaatccgacttctgtggagaagaacttcttacttgggcactagacccgaaatcaggttctaacctcccatcttctactcgtaccgtgaaagctctgacagaggtagaggcttttgcattaatagcagatgagttgaaattcgtcgccagtcagttcagaaagctccacagtagacaggtacagcacacgttccgtttctactcacagcactggagaacttgggctgcttgcttcatccaagcagcatggaggcgtttcacgaaaaggaaacttatggaactacaaagaaaagaggatgaagaagcagaagcgttggccggggccagtagtaactcgggtggagcttcttttagtattggggcaacgttcttggcatcgagatttgcagctaatgctctccgaggcgttcataagaatcgaaatctcaagtctgctagggagcttatgaagctgcaaaaacctccagaacctgatttcagtgaagatactgactgaattttgtatgcttaagctttgcaaaaagcttgatgtataatttatgtttattagtcttattgctacatatttatgtaagagtttaacttctttaaactgatactgattgtgtaaataaatatttacatttatcatctcgcctaaaaggtaactatgggtagctgcccgtgataagtagaagacacctttcgtttcaatttatttgtctgttttaaattgatacaacgtttgtaaaaaagatttttaaattttgtggtattaaactaaagatacgtaaaatgtatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLm0012N14-xCzpm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12SLm0012N14.1" temp_strand="+" temp_description="C12SLm0012N14.1  AC235494.2 htgs_phase:2 submitted_to_sgn_as:gi|238550293|gb|AC235494.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_MboI-12N14, WORKING DRAFT SEQUENCE, 2 ordered pieces">
        <position start="99391" stop="104450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99690" g_stop="99842" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99843" i_stop="101170" i_length="1328">
            <donor d_prob="0.754" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101171" g_stop="101282" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="265" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101283" i_stop="102498" i_length="1216">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102499" g_stop="102735" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="502" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102736" i_stop="103303" i_length="568">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103304" g_stop="104284" g_length="981"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="1485" r_length="983" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLm0012N14.1" gen_strand="+" ref_id="SGN-U571286" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1483</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLm0012N14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99690" e_stop="99842"/>
          <exon e_start="101171" e_stop="101282"/>
          <exon e_start="102499" e_stop="102735"/>
          <exon e_start="103304" e_stop="104284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGTTTTAAATGGAGCATGCCCTCGTAGCGGTGACAATCCACCATTTGATTTTGGAATTTTCGCGCAGGCTTTGTCATCAGGCATAGTTTTCTCAATGAAGTTTGTGACTAAATATTGCTACTGTTTGTGGTGGGGACTCCAGAATTTAAGGTGGCTTTACTCTTTAACATTATTCTTATCTCATTTGCTTTAGTCTCTCGTATCTTTCAGGGATTATGCCTAAGGAGTGAAAAACAAAGCATTAAAATTTTCCATCACATTACTACTAAATCCTTTTGTTGTTTGAAGTGTACATTTATGCCTAATTACTTCATTGTAGTTTACCATTTGCTCAACTATATGTTGATTAAACGTTATTTGAAAGTTGTATGAAAAGTCTGCATGCACTAGGTTTTGCATATTATGACTATTTCCTTTTGGCACTTTGTCATGCTCTCTATAGTATTTTGCCATAGCTTTTCCACTTCCGCCTTTCTTTTCGAACCGTATTGAATTGTTTTTCCTTGAGCCAATCTCTACATCCCAAGGTAGAGGTAATGTACACTTACACTCTACCCCTCCCCTATTCCCACTCGTCGGATTACACTGAATATGTTGTTGTTGCTGCTTGTTGGCGCTCACTTAGGTTCTATTCCTACCTGATAGCCTATAATTCAACGTGAACAAGTTTTTTTTTTTTATGTTAAGGTAACAAGATTATAGGGTGGTTATTAAAAATCAAAACCATATGGCTTTGCAGGAGTTACAGGGAGATATAAGACAAGCATCCATAGGTACTTTGGTCTAGTTGTAACTTGTATAAGTAAGAGCTCAACTTGTGATGTGTAAATTTGGTGCACGTTACAGGTTCAAATCCTACCGCAAATAAAAGCCTGGTATTTAAGTAGAAAACGATGGAGGGGAGAACCCATTATCCACCGAGTTTCGAACTGTGCACCAATGGCCTGCAGAGATTTATCTGTTACTAAGAAAATGTCAAGTTCCTAATTCAATTGTTCCAGAGTTCCAGTGTGACCATACTTTTTCCTGTTGAATACGAGAAGAGAAATTTCCTCCTAATCGTGTGCTATCATCGTATCTAAATGATTAATATTCCGATGGCCTTTTCGGTTCATATTGTCTATCAACTAATTGGTTTACGGAGGAGTAGTGTTTTCCTGTCACTGAATCATGACAGCCGATAATTAAATGTGAACACTAATTCAATATATTCCAGTATTATATGCTTCTTTTGGTTCATATTGTCTATTCACTATTTGGTTAGACCAATATTAGTTGTAGGATCTTCTTTTCGTTTTGTTCTTTACCCGGAGGACTGAAGAGGAAAAGAAGAATCGACTAAGCTGGAGTTCGGAAAACTAATTAAATGAATATTTACGTTATTTTCTTTTCATATGCTAAGGTATATCAATTGTTAATAAACCTTTTGGTGAACTTGTTCTAATAGCATTTCTTTTTTTCTTGTTTTGCTTGTGTAGTACCCTTGGACAGGGACTTCAAACTAGCACATATCCTGGGGAGTCTTTATTCTCTATTGCACTAGCGATACTCGGGCTCATTCTCTTTGCATTGCTGATTGGTAACATGCAGGTAATCACCGAATGCTAGTAATGTAGCTTCTGCACTGACATAGCTTATAGAGATTGCTTGTCATTTTGTTACTAACATAATATTGTGCGAAAACTTCAGAAAGATCAGTTGCACGTGAGAGTTTACTGTTAAGTGGTTATGATACTGGTGCTTGATGAAAACGGAGCTCAAGACATTTGACAGTTTAGATAACGCACTTGGTGCAATCATTTAAAAAAATGCACTTTGTGTATTTCTTTCGGAAAAAATGAGTTAGGCATAATACATAATTAACACAATCAAACTTGGCCTTAGTTGGCAAGTAAACACTCCAACTTCGTGTATGCACATATCGACTCCTCAGCTCGTCTCCACTGTGTTAGTTGAGCACTCCTAACTTACAAAATGATCAGCTAGACACCTCGAAAATTTATGTGTCACATCACATCGGGTGTCAAGAGACACAGAGGAGACAAATTGGGGTTTGTTGCCAGTTGAAACCAAGTTGAGGTGTGTAGATGTGCACTCGCAAAGTTAGAGTTCTTACTTACTAGATGAGGCGATGTTTTAGGGTTTGTTTATGTATTTACGCCATTAGATAATTCCACTTTGTTTTAAGTGAAAAGTTCTTGCAAAATGTTGATATCATCTCAGCAGTGTCAAGTAAAGTGCTTCTCTCTCAGCAACAGTTAAGAGTTCACAGTAGTCATGAGACATACAGAGGGATTATTCATAATTTTTGAGATTGTGGTAAATGTCAAGCAATAGCATCTTTTAGACAATTCCAATAGAGGTTTAGGATCTTAAGATATGCCATCATAGAGTACTACACAGATATAAAGCTTTGTCGGATACCTCCTTGACATGATATTTTTATGTACGAGACCGGTTGCTGTTGTAGTGTTGTTTATTCTTCTTTTGGCTCCCATCTCTCGTTTCTTCCAAAATGATACTTAAAAAAAAAGTTTAAATTATGGAAGACTCTCACGAAAAGAAATTCTGAAGAAGATGCCAAGGGACAGAATTTTTGGATTACTTGCACTATGGCATCCGAGTAATGTATTCCTTTCGTTCGAGCAACCGACTCGCATGAAAATTACTTACACTATCAAAATCAAAACTGTTGTTCCACAATAAATTCATTTTATGATTTTCAGTTTCTTTGAAGTGTTTCTGATAATGGCATTTGTATCTATGGGAAATTGTTACTCAAGAGTTTGGTGTTTTGTTATCACAGACATACCTTCAGTCACTTACTATTCGACTTGAAGAGATGAGAGTTAGAAGGCGTGACTCGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGGGTAACTAAATTATATATTCCTGCTTTTTCGATAATATTTGTTTCTTCTGTTGCCTAGACCCTCCAAAAATGTTGCTGCACCAATGTCAGGTCCTCCAAAAATGCATAGCTCTTGGAGGACCCAACACACATCTGGTGATATTTATGAAGAGTCCGAGCAACATAGGTATCATTGTAGTCGTGGTACTGTCGTCGTGTGGTGCAGCAGAGTTGCTACCCCAACCTCACAAGTGGGGTCTGGGTAGGTTAAAGTGTAAGCACACCTTAACCCTACCGCGTGGAGGTAGAGAGTGTTTGCGAAAGACCCTCGGCTTAAGTGCAGCATATCAAAATTGCTGGAAAACGACAATGAAGAAAATATAGCAACTAATGATCTGGTCTTAGTAGTGTTCTTTCTTTTATTTCATGTTTTCCTAGTTACTTGCTACAATCCGATGTTATAATTCTTCTAAGAGTGAACGACCGAACATTCATTTTATGACTGGGACAAACGATTCTACAGCTGCTAAGCTTTACGTTATTGTCTTTTGCTAGTTTTACTTTACTAATATTCCATTGTTAATTTTCAGGTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAACTTCTTTAAACTGATACTGATTGTGTAAATAAATATTTACATTTATCATCTCGCCTAAAAGGTAACTATGGGTAGCTGCCCGTGATAAGTAGAAGACACCTTTCGTTTCAATTTGTTTGTCTGTTTTAAATTGATACAACGTTTGTAAAAAAGA--CTTAAATTTTGTGGTATTAAACTAAAAATACGTTAAATGTATCAT</genome_strand>
        <mrna_strand>GTCGGTTTTAAATGGAGCATGCCCTCGTAGCGGTGACAATCCACCATTTGATTTTGGAATTTTCGCGCAGGCTTTGTCATCAGGCATAGTTTTCTCAATGAAGTTTGTGACTAAATATTGCTACTGTTTGTGGTGGGGACTCCAGAATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCTTGGACAGGGACTTCAAACTAGCACATATCCTGGGGAGTCTTTATTCTCTATTGCACTAGCGATACTCGGGCTCATTCTCTTTGCATTGCTGATTGGTAACATGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACCTTCAGTCACTTACTATTCGACTTGAAGAGATGAGAGTTAGAAGGCGTGACTCGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAACTTCTTTAAACTGATACTGATTGTGTAAATAAATATTTACATTTATCATCTCGCCTAAAAGGTAACTATGGGTAGCTGCCCGTGATAAGTAGAAGACACCTTTCGTTTCAATTTATTTGTCTGTTTTAAATTGATACAACGTTTGTAAAAAAGATTTTTAAATTTTGTGGTATTAAACTAAAGATACGTAAAATGTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9122" PGL_stop="8205"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9122" e_stop="8205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="9122" e_stop="8205" e_length="918"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9122" stop="8205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574651" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAGCCAAACGCGGCACTAAGAAATACTCTCCAATCTTCTTCTTCTTCTCTCTCAACTGTAAAACAACAAAAAATGGCGGCTTCTGCACGGCGATCAACCGGACCGGTGCTCCGTTCATTATCTCCCGCCGGCAGATTTTACTCATCGTCATCTAGAACTTCGTCGTCTTCTGCTTCATCGATCCGGTTTACACTGGACCGTGAAACTTCCCCAAGCCGGTCTATTTCCGTAATGAACCGGCAGAAAACACTGGCTTCTTCTCAGAAGAAGAGGTGTATGTGTTCGCCGACGAATCATCCAGGTTCGTTCCGTTGTAGTATGCATAAGAAAATGGATATTCGACGGAGTAGTAGTACTAGCCAAACGGCGTCGAATTCGATTCGATTGCATATGAGGCGATCGGCGATGACGAATTCGTTAGTGCGAATCGGAACTGTTGAAGGTGAGCTTGTTAAAAGAGCTTTAGCGGCTTTGATTCGTCCTTCTTCGCATCAACAGCGTCGCCGTTCCGATTTCCAACGCCGACCTAGTCGACTTTCCGTTATTTCCAGTTCCGGTGACTCATAAGTCAGTTATTCTTTCTCTAGAAATTTCATTCAACAACGCGTGCTGCGCCGATTCTTAGCGCAGATCTGGCCGGATCTCCATTGTTTCCGGTGCCGGTGATACGTAGGACGTGAATAGAGCTGTTAGAAGTTTGCTTTTCTGTTGAATGCTGACCTCAGCAATCGATGTCTGGCCGTGAAGTAACGTCAGCTGCAACGAGGTGGCGGCGGCGAACTGGAGTGTACACGGTGGAGGTCGGAACGGAACAACTTTTTTGTGTACTCCGGTGACCAAAACGTTAGGATCCATATGTCTAATAGTCTAAAATACATGAAGAAAATTATAAAATCATTCAGTTCTCCTAATTATGA</gDNA_template>
            <first_frame> T  A  K  R  G  T  K  K  Y  S  P  I  F  F  F  F  S  L  N  C  K  T  T  K  N  G  G  F  C  T  A  I  N  R  T  G  A  P  F  I  I  S  R  R  Q  I  L  L  I  V  I  *  N  F  V  V  F  C  F  I  D  P  V  Y  T  G  P  *  N  F  P  K  P  V  Y  F  R  N  E  P  A  E  N  T  G  F  F  S  E  E  E  V  Y  V  F  A  D  E  S  S  R  F  V  P  L  *  Y  A  *  E  N  G  Y  S  T  E  *  *  Y  *  P  N  G  V  E  F  D  S  I  A  Y  E  A  I  G  D  D  E  F  V  S  A  N  R  N  C  *  R  *  A  C  *  K  S  F  S  G  F  D  S  S  F  F  A  S  T  A  S  P  F  R  F  P  T  P  T  *  S  T  F  R  Y  F  Q  F  R  *  L  I  S  Q  L  F  F  L  *  K  F  H  S  T  T  R  A  A  P  I  L  S  A  D  L  A  G  S  P  L  F  P  V  P  V  I  R  R  T  *  I  E  L  L  E  V  C  F  S  V  E  C  *  P  Q  Q  S  M  S  G  R  E  V  T  S  A  A  T  R  W  R  R  R  T  G  V  Y  T  V  E  V  G  T  E  Q  L  F  C  V  L  R  *  P  K  R  *  D  P  Y  V  *  *  S  K  I  H  E  E  N  Y  K  I  I  Q  F  S  *  L  * </first_frame>
            <second_frame>  Q  P  N  A  A  L  R  N  T  L  Q  S  S  S  S  S  L  S  T  V  K  Q  Q  K  M  A  A  S  A  R  R  S  T  G  P  V  L  R  S  L  S  P  A  G  R  F  Y  S  S  S  S  R  T  S  S  S  S  A  S  S  I  R  F  T  L  D  R  E  T  S  P  S  R  S  I  S  V  M  N  R  Q  K  T  L  A  S  S  Q  K  K  R  C  M  C  S  P  T  N  H  P  G  S  F  R  C  S  M  H  K  K  M  D  I  R  R  S  S  S  T  S  Q  T  A  S  N  S  I  R  L  H  M  R  R  S  A  M  T  N  S  L  V  R  I  G  T  V  E  G  E  L  V  K  R  A  L  A  A  L  I  R  P  S  S  H  Q  Q  R  R  R  S  D  F  Q  R  R  P  S  R  L  S  V  I  S  S  S  G  D  S  *  V  S  Y  S  F  S  R  N  F  I  Q  Q  R  V  L  R  R  F  L  A  Q  I  W  P  D  L  H  C  F  R  C  R  *  Y  V  G  R  E  *  S  C  *  K  F  A  F  L  L  N  A  D  L  S  N  R  C  L  A  V  K  *  R  Q  L  Q  R  G  G  G  G  E  L  E  C  T  R  W  R  S  E  R  N  N  F  F  V  Y  S  G  D  Q  N  V  R  I  H  M  S  N  S  L  K  Y  M  K  K  I  I  K  S  F  S  S  P  N  Y   </second_frame>
            <third_frame>   S  Q  T  R  H  *  E  I  L  S  N  L  L  L  L  L  S  Q  L  *  N  N  K  K  W  R  L  L  H  G  D  Q  P  D  R  C  S  V  H  Y  L  P  P  A  D  F  T  H  R  H  L  E  L  R  R  L  L  L  H  R  S  G  L  H  W  T  V  K  L  P  Q  A  G  L  F  P  *  *  T  G  R  K  H  W  L  L  L  R  R  R  G  V  C  V  R  R  R  I  I  Q  V  R  S  V  V  V  C  I  R  K  W  I  F  D  G  V  V  V  L  A  K  R  R  R  I  R  F  D  C  I  *  G  D  R  R  *  R  I  R  *  C  E  S  E  L  L  K  V  S  L  L  K  E  L  *  R  L  *  F  V  L  L  R  I  N  S  V  A  V  P  I  S  N  A  D  L  V  D  F  P  L  F  P  V  P  V  T  H  K  S  V  I  L  S  L  E  I  S  F  N  N  A  C  C  A  D  S  *  R  R  S  G  R  I  S  I  V  S  G  A  G  D  T  *  D  V  N  R  A  V  R  S  L  L  F  C  *  M  L  T  S  A  I  D  V  W  P  *  S  N  V  S  C  N  E  V  A  A  A  N  W  S  V  H  G  G  G  R  N  G  T  T  F  L  C  T  P  V  T  K  T  L  G  S  I  C  L  I  V  *  N  T  *  R  K  L  *  N  H  S  V  L  L  I  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9121" stop="8555"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPNAALRNTLQSSSSSLSTVKQQKMAASARRSTGPVLRSLSPAGRFYSSSSRTSSSSASSIRFTLDRETSPSRSISVMNRQKTLASSQKKRCMCSPTNHPGSFRCSMHKKMDIRRSSSTSQTASNSIRLHMRRSAMTNSLVRIGTVEGELVKRALAALIRPSSHQQRRRSDFQRRPSRLSVISSSGDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8213" PGL_stop="8761"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8213" e_stop="8761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="8213" e_stop="8761" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8213" stop="8761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAGAACTGAATGATTTTATAATTTTCTTCATGTATTTTAGACTATTAGACATATGGATCCTAACGTTTTGGTCACCGGAGTACACAAAAAAGTTGTTCCGTTCCGACCTCCACCGTGTACACTCCAGTTCGCCGCCGCCACCTCGTTGCAGCTGACGTTACTTCACGGCCAGACATCGATTGCTGAGGTCAGCATTCAACAGAAAAGCAAACTTCTAACAGCTCTATTCACGTCCTACGTATCACCGGCACCGGAAACAATGGAGATCCGGCCAGATCTGCGCTAAGAATCGGCGCAGCACGCGTTGTTGAATGAAATTTCTAGAGAAAGAATAACTGACTTATGAGTCACCGGAACTGGAAATAACGGAAAGTCGACTAGGTCGGCGTTGGAAATCGGAACGGCGACGCTGTTGATGCGAAGAAGGACGAATCAAAGCCGCTAAAGCTCTTTTAACAAGCTCACCTTCAACAGTTCCGATTCGCACTAACGAATTCGTCATCGCCGATCGCCTCATATGCAATCGAATCGAATTCGACGCCGTTTG</gDNA_template>
            <first_frame> R  R  T  E  *  F  Y  N  F  L  H  V  F  *  T  I  R  H  M  D  P  N  V  L  V  T  G  V  H  K  K  V  V  P  F  R  P  P  P  C  T  L  Q  F  A  A  A  T  S  L  Q  L  T  L  L  H  G  Q  T  S  I  A  E  V  S  I  Q  Q  K  S  K  L  L  T  A  L  F  T  S  Y  V  S  P  A  P  E  T  M  E  I  R  P  D  L  R  *  E  S  A  Q  H  A  L  L  N  E  I  S  R  E  R  I  T  D  L  *  V  T  G  T  G  N  N  G  K  S  T  R  S  A  L  E  I  G  T  A  T  L  L  M  R  R  R  T  N  Q  S  R  *  S  S  F  N  K  L  T  F  N  S  S  D  S  H  *  R  I  R  H  R  R  S  P  H  M  Q  S  N  R  I  R  R  R  L </first_frame>
            <second_frame>  G  E  L  N  D  F  I  I  F  F  M  Y  F  R  L  L  D  I  W  I  L  T  F  W  S  P  E  Y  T  K  K  L  F  R  S  D  L  H  R  V  H  S  S  S  P  P  P  P  R  C  S  *  R  Y  F  T  A  R  H  R  L  L  R  S  A  F  N  R  K  A  N  F  *  Q  L  Y  S  R  P  T  Y  H  R  H  R  K  Q  W  R  S  G  Q  I  C  A  K  N  R  R  S  T  R  C  *  M  K  F  L  E  K  E  *  L  T  Y  E  S  P  E  L  E  I  T  E  S  R  L  G  R  R  W  K  S  E  R  R  R  C  *  C  E  E  G  R  I  K  A  A  K  A  L  L  T  S  S  P  S  T  V  P  I  R  T  N  E  F  V  I  A  D  R  L  I  C  N  R  I  E  F  D  A  V   </second_frame>
            <third_frame>   E  N  *  M  I  L  *  F  S  S  C  I  L  D  Y  *  T  Y  G  S  *  R  F  G  H  R  S  T  Q  K  S  C  S  V  P  T  S  T  V  Y  T  P  V  R  R  R  H  L  V  A  A  D  V  T  S  R  P  D  I  D  C  *  G  Q  H  S  T  E  K  Q  T  S  N  S  S  I  H  V  L  R  I  T  G  T  G  N  N  G  D  P  A  R  S  A  L  R  I  G  A  A  R  V  V  E  *  N  F  *  R  K  N  N  *  L  M  S  H  R  N  W  K  *  R  K  V  D  *  V  G  V  G  N  R  N  G  D  A  V  D  A  K  K  D  E  S  K  P  L  K  L  F  *  Q  A  H  L  Q  Q  F  R  F  A  L  T  N  S  S  S  P  I  A  S  Y  A  I  E  S  N  S  T  P  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8255" stop="8500"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIRHMDPNVLVTGVHKKVVPFRPPPCTLQFAAATSLQLTLLHGQTSIAEVSIQQKSKLLTALFTSYVSPAPETMEIRPDLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="16804" PGL_stop="22803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16804" e_stop="16866"/>
            <exon e_start="18224" e_stop="18339"/>
            <exon e_start="18996" e_stop="19121"/>
            <exon e_start="19740" e_stop="19842"/>
            <exon e_start="20086" e_stop="20158"/>
            <exon e_start="20988" e_stop="21053"/>
            <exon e_start="21162" e_stop="21279"/>
            <exon e_start="21984" e_stop="22145"/>
            <exon e_start="22701" e_stop="22803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.301" acc_prob="0.815" e_score="1.000"/>
          <exon-intron don_prob="0.599" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.679" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.851" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16804" e_stop="16866" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.895">
            <gDNA_intron_boundary i_start="16867" i_stop="18223" i_length="1357"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18224" e_stop="18339" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.907">
            <gDNA_intron_boundary i_start="18340" i_stop="18995" i_length="656"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18996" e_stop="19121" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.301" acc_prob="0.815">
            <gDNA_intron_boundary i_start="19122" i_stop="19739" i_length="618"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19740" e_stop="19842" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.599" acc_prob="0.988">
            <gDNA_intron_boundary i_start="19843" i_stop="20085" i_length="243"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20086" e_stop="20158" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.958" acc_prob="0.978">
            <gDNA_intron_boundary i_start="20159" i_stop="20987" i_length="829"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20988" e_stop="21053" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.679" acc_prob="0.974">
            <gDNA_intron_boundary i_start="21054" i_stop="21161" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21162" e_stop="21279" e_length="118"/>
          </exon>
          <intron i_serial="7" don_prob="0.946" acc_prob="0.832">
            <gDNA_intron_boundary i_start="21280" i_stop="21983" i_length="704"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21984" e_stop="22145" e_length="162"/>
          </exon>
          <intron i_serial="8" don_prob="0.969" acc_prob="0.851">
            <gDNA_intron_boundary i_start="22146" i_stop="22700" i_length="555"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="22701" e_stop="22803" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16804" stop="16866"/>
              <exon start="18224" stop="18339"/>
              <exon start="18996" stop="19121"/>
              <exon start="19740" stop="19842"/>
              <exon start="20086" stop="20158"/>
              <exon start="20988" stop="21053"/>
              <exon start="21162" stop="21279"/>
              <exon start="21984" stop="22145"/>
              <exon start="22701" stop="22803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGGCTCTTTCAGATTTCAACTCCCATCTGTGGCACCTCTGTTCATCACCATCTTCATATG : GTTGAAGGAAACAACAGATTCTGAATTTTCTTGTTTCATTAGAGGATATCAGATTTTCAGATCGGAAGAATATAATCACAATGACAATTGAAAACGGTGAGCTCACCACCGAGCAG : GTTTTGAGGAGGGATATTCCATGGGAGACTTACATGACCACGAAGCTGATCAGTGGAACAGATCTTCAGCTGTTGAGGCGTTATGATAAAATGGCTGAAAGCTACAAATCTCAGTTGCTGGATAAT : GACGGTCCAGCTTATATCCGTGTTTTTGTTACTACTTTACGAGATATCTTCAAGGACGAAACCGTGGAATATGTTTTAGCTTTAATTGATGAAATGCTTACAG : CAAACCCAAGAAGAGCGAGATTATTCCATGATAGCTCTTTATCCAATGAAGACACTTATGAACCTTTCCTCAG : ATTTCTTTGGAAAGGTAATTGGTTCATCCAAGAGAAGAGCTGTAAGATTCTCTCTTTGATAGTGAG : TGCCAGGCCAAATGTTCAGAATGTTGCTGATGCAAATGGAGATGCCTCGAGTTCAAAGAGGACACTCACCACTATGGAAAATATTCTGAATGGCCTAGTAGATTGGCTATGCTCACAG : CTGAGAAAGCCTTCTCATCCTAGTTGTAGCATTCCCTCTGCAATCAATTGTCTTGCAACACTGTTGAAGGAGCCTGTTGTTCGACGTTCATTTGTTCAATCTGATGGAGTGAAGCTGCTCATTCCTTTAATTTCACCAGCATCTACTCAGCAGTCCATTCAG : CTTCTCTACGAGACATGTCTATGCGTTTGGCTTCTGTCTTACTATGAACCTGCAATTGAGTACTTGGCTACTTCTAGGGCCCTACCTCGATTGATTGAAGTTG</gDNA_template>
            <first_frame> G  W  L  F  Q  I  S  T  P  I  C  G  T  S  V  H  H  H  L  H  M  :  V  E  G  N  N  R  F  *  I  F  L  F  H  *  R  I  S  D  F  Q  I  G  R  I  *  S  Q  *  Q  L  K  T  V  S  S  P  P  S  R :   F  *  G  G  I  F  H  G  R  L  T  *  P  R  S  *  S  V  E  Q  I  F  S  C  *  G  V  M  I  K  W  L  K  A  T  N  L  S  C  W  I  M :   T  V  Q  L  I  S  V  F  L  L  L  L  Y  E  I  S  S  R  T  K  P  W  N  M  F  *  L  *  L  M  K  C  L  Q  :  Q  T  Q  E  E  R  D  Y  S  M  I  A  L  Y  P  M  K  T  L  M  N  L  S  S   : D  F  F  G  K  V  I  G  S  S  K  R  R  A  V  R  F  S  L  *  *  *   : V  P  G  Q  M  F  R  M  L  L  M  Q  M  E  M  P  R  V  Q  R  G  H  S  P  L  W  K  I  F  *  M  A  *  *  I  G  Y  A  H  S :   *  E  S  L  L  I  L  V  V  A  F  P  L  Q  S  I  V  L  Q  H  C  *  R  S  L  L  F  D  V  H  L  F  N  L  M  E  *  S  C  S  F  L  *  F  H  Q  H  L  L  S  S  P  F  S :   F  S  T  R  H  V  Y  A  F  G  F  C  L  T  M  N  L  Q  L  S  T  W  L  L  L  G  P  Y  L  D  *  L  K  L </first_frame>
            <second_frame>  V  G  S  F  R  F  Q  L  P  S  V  A  P  L  F  I  T  I  F  I  W :   L  K  E  T  T  D  S  E  F  S  C  F  I  R  G  Y  Q  I  F  R  S  E  E  Y  N  H  N  D  N  *  K  R  *  A  H  H  R  A   : G  F  E  E  G  Y  S  M  G  D  L  H  D  H  E  A  D  Q  W  N  R  S  S  A  V  E  A  L  *  *  N  G  *  K  L  Q  I  S  V  A  G  *   : *  R  S  S  L  Y  P  C  F  C  Y  Y  F  T  R  Y  L  Q  G  R  N  R  G  I  C  F  S  F  N  *  *  N  A  Y  S :   K  P  K  K  S  E  I  I  P  *  *  L  F  I  Q  *  R  H  L  *  T  F  P  Q  :  I  S  L  E  R  *  L  V  H  P  R  E  E  L  *  D  S  L  F  D  S  E  :  C  Q  A  K  C  S  E  C  C  *  C  K  W  R  C  L  E  F  K  E  D  T  H  H  Y  G  K  Y  S  E  W  P  S  R  L  A  M  L  T   : A  E  K  A  F  S  S  *  L  *  H  S  L  C  N  Q  L  S  C  N  T  V  E  G  A  C  C  S  T  F  I  C  S  I  *  W  S  E  A  A  H  S  F  N  F  T  S  I  Y  S  A  V  H  S   : A  S  L  R  D  M  S  M  R  L  A  S  V  L  L  *  T  C  N  *  V  L  G  Y  F  *  G  P  T  S  I  D  *  S   </second_frame>
            <third_frame>   L  A  L  S  D  F  N  S  H  L  W  H  L  C  S  S  P  S  S  Y   : G  *  R  K  Q  Q  I  L  N  F  L  V  S  L  E  D  I  R  F  S  D  R  K  N  I  I  T  M  T  I  E  N  G  E  L  T  T  E  Q  :  V  L  R  R  D  I  P  W  E  T  Y  M  T  T  K  L  I  S  G  T  D  L  Q  L  L  R  R  Y  D  K  M  A  E  S  Y  K  S  Q  L  L  D  N  :  D  G  P  A  Y  I  R  V  F  V  T  T  L  R  D  I  F  K  D  E  T  V  E  Y  V  L  A  L  I  D  E  M  L  T   : A  N  P  R  R  A  R  L  F  H  D  S  S  L  S  N  E  D  T  Y  E  P  F  L  R :   F  L  W  K  G  N  W  F  I  Q  E  K  S  C  K  I  L  S  L  I  V  S :   A  R  P  N  V  Q  N  V  A  D  A  N  G  D  A  S  S  S  K  R  T  L  T  T  M  E  N  I  L  N  G  L  V  D  W  L  C  S  Q  :  L  R  K  P  S  H  P  S  C  S  I  P  S  A  I  N  C  L  A  T  L  L  K  E  P  V  V  R  R  S  F  V  Q  S  D  G  V  K  L  L  I  P  L  I  S  P  A  S  T  Q  Q  S  I  Q  :  L  L  Y  E  T  C  L  C  V  W  L  L  S  Y  Y  E  P  A  I  E  Y  L  A  T  S  R  A  L  P  R  L  I  E  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18229" stop="18339"/>
                    <exon start="18996" stop="19121"/>
                    <exon start="19740" stop="19842"/>
                    <exon start="20086" stop="20158"/>
                    <exon start="20988" stop="21053"/>
                    <exon start="21162" stop="21279"/>
                    <exon start="21984" stop="22145"/>
                    <exon start="22701" stop="22802"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKQQILNFLVSLEDIRFSDRKNIITMTIENGELTTEQVLRRDIPWETYMTTKLISGTDLQLLRRYDKMAESYKSQLLDNDGPAYIRVFVTTLRDIFKDETVEYVLALIDEMLTANPRRARLFHDSSLSNEDTYEPFLRFLWKGNWFIQEKSCKILSLIVSARPNVQNVADANGDASSSKRTLTTMENILNGLVDWLCSQLRKPSHPSCSIPSAINCLATLLKEPVVRRSFVQSDGVKLLIPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEYLATSRALPRLIEV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="46503" PGL_stop="44567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46503" e_stop="44567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="46503" e_stop="44567" e_length="1937"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46503" stop="44567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCCAAGGACAACTTCATTCTCTTCTTCCTGGCTATGTTCACCTTGCAAAGAGAACAAATATTTTCAGTAGTAGAGATTGAACTGCACTCATGCCTCTCGCGCATCAAGTTGACCGTTCCGCCTTACGTAAGCAATGCCATTCAGCCATTAACTTCTTCTTTACATTCATTGTGTTTGTACCAAATGCAGGCCATTGTAGAGTTCAGAATCAGTGATTCAAGTGTGAAAGTCTCGGCAGGTGTTTCCTGGTATGCCTCACAAATCTACTTGTTTTGAACAATGAACAATATGTTTCATTTTGTGTCTTACGTGTATTATGTCATATAGGATACGCGTGTCTATTTGTTCAATTTTAAACAAGTTTAACTGCTTACTAATGCACACTCAAAGTTGGAGCGCATAGTTATCTGCTGAACCAAGTTAAGGATCATGTTTATGTATTATGTCTGTTTTTTTCGTAAGAATCAAATAGGTTAAGTTGCTCGGACTCTCTAATGATGCAACACTTGTATTAGATCCTCCGAAAATTCACTACTTTTGGAAGATCCAACACACAATTGTCGAGATCTTTGAAGACTTTGAGCAACATAGCAACAACGTTTTCGATATACAAACTTCAACGGCTGCAGGAGCACGCTTTCTATTAGACAAATAACCTTGGTCGACATAGAGACGTGACAGAACTATCTCTTTACGCCTCTTCTCATTAAGGAATAACGACTTGGATGTGAAATGGGTTTTGGAGGTCAGAGTAAAACGTATATTCAATCTTTGAGAGGTAGTTAGAAGCCGTTTCCAATAGACCCTTTGGCTCAAGGAAAATGGAAATATTAACCTCACTATCTTCATCAAGTTTCCATTAGCAATCAAATCAATAGAAGATAGGGCAACAAAGAAGGATTGAAAATGTCTCTCAATAGATTGAAATGACTTTCAATAATTTTATTAAGCGTTGAAGGACTTACAATAGACATCATAAACACATAATTTGAAATTTAAAACAATCTTAAATATCAAACTTATTTTGCTAAAAATTACTATTGCATAACAACGTAACTAAAAGCAAACTTCAACGGTGAAGTTATTCAATTATATGTGATATGAATGATTCCATGGCCTCGCGTGCAAGTCCTCCGTGGCTAACAGAGTTTTTGATCTTTTTGCTCAATTCCATTGCCGTTTGCCTCATTTCTTCCCCTTCTATGGTACTCGTCAATGTCTCGATAGATTTCTCTATGGTTGATGCTTTTACCAATTCATCGCGGTGAGACCAACACTTGACAGTGATTCCAATCTCCAACAAATTAGTTACAAGTATAGCGTTAAATGGCTGATCGAAACTGATTGGCCTAGTAGCTATAGGTACTCCCATGTTAATGCTCTCGATACATGAATTCCATCCACAGTGACTCATAAACCCCCCTGTCGATGAATGTCCCAAGAATTCTAATTGTGTTGCCCAATTAACCATTATTCCTCTTCCTTCCACTCTTACTTCAAACCCTTCGGGTAATTCAATCTTTACGACTTTATCTTTAAGTTTCTCCGCGTTATCTCCTTTTCTTAGTACCCAAATAAATCTACGGTTGCTCTGTTCTAAACCCAGAGCAATCTCATTGACTTGCTCTTGTGATAACGTAGTCGTTGATCCAGATGAGATGAGTATCACCGAGTTAACATCTTGTTTGATTCGAGAAATTCTAGGCATTGATCATAACGCAGAGTGATGTTGCTTGATCGCGATCATTTTTTTGCGTTGGAGATGAAGGTCTCAACAGGTTATCGAAATAGATGTTTGAAGCTCTTACATCACCTTGAACGCGAAGTTTCAAATATTCGTTAACATTAGCAAAACAGAGGAAATGTACTTGTAATTTCATTTTTAACTGAGATCGCCCTATGATGAGAAATATATATATATTTTTATTTGTCTTG</gDNA_template>
            <first_frame> G  P  R  T  T  S  F  S  S  S  W  L  C  S  P  C  K  E  N  K  Y  F  Q  *  *  R  L  N  C  T  H  A  S  R  A  S  S  *  P  F  R  L  T  *  A  M  P  F  S  H  *  L  L  L  Y  I  H  C  V  C  T  K  C  R  P  L  *  S  S  E  S  V  I  Q  V  *  K  S  R  Q  V  F  P  G  M  P  H  K  S  T  C  F  E  Q  *  T  I  C  F  I  L  C  L  T  C  I  M  S  Y  R  I  R  V  S  I  C  S  I  L  N  K  F  N  C  L  L  M  H  T  Q  S  W  S  A  *  L  S  A  E  P  S  *  G  S  C  L  C  I  M  S  V  F  F  V  R  I  K  *  V  K  L  L  G  L  S  N  D  A  T  L  V  L  D  P  P  K  I  H  Y  F  W  K  I  Q  H  T  I  V  E  I  F  E  D  F  E  Q  H  S  N  N  V  F  D  I  Q  T  S  T  A  A  G  A  R  F  L  L  D  K  *  P  W  S  T  *  R  R  D  R  T  I  S  L  R  L  F  S  L  R  N  N  D  L  D  V  K  W  V  L  E  V  R  V  K  R  I  F  N  L  *  E  V  V  R  S  R  F  Q  *  T  L  W  L  K  E  N  G  N  I  N  L  T  I  F  I  K  F  P  L  A  I  K  S  I  E  D  R  A  T  K  K  D  *  K  C  L  S  I  D  *  N  D  F  Q  *  F  Y  *  A  L  K  D  L  Q  *  T  S  *  T  H  N  L  K  F  K  T  I  L  N  I  K  L  I  L  L  K  I  T  I  A  *  Q  R  N  *  K  Q  T  S  T  V  K  L  F  N  Y  M  *  Y  E  *  F  H  G  L  A  C  K  S  S  V  A  N  R  V  F  D  L  F  A  Q  F  H  C  R  L  P  H  F  F  P  F  Y  G  T  R  Q  C  L  D  R  F  L  Y  G  *  C  F  Y  Q  F  I  A  V  R  P  T  L  D  S  D  S  N  L  Q  Q  I  S  Y  K  Y  S  V  K  W  L  I  E  T  D  W  P  S  S  Y  R  Y  S  H  V  N  A  L  D  T  *  I  P  S  T  V  T  H  K  P  P  C  R  *  M  S  Q  E  F  *  L  C  C  P  I  N  H  Y  S  S  S  F  H  S  Y  F  K  P  F  G  *  F  N  L  Y  D  F  I  F  K  F  L  R  V  I  S  F  S  *  Y  P  N  K  S  T  V  A  L  F  *  T  Q  S  N  L  I  D  L  L  L  *  *  R  S  R  *  S  R  *  D  E  Y  H  R  V  N  I  L  F  D  S  R  N  S  R  H  *  S  *  R  R  V  M  L  L  D  R  D  H  F  F  A  L  E  M  K  V  S  T  G  Y  R  N  R  C  L  K  L  L  H  H  L  E  R  E  V  S  N  I  R  *  H  *  Q  N  R  G  N  V  L  V  I  S  F  L  T  E  I  A  L  *  *  E  I  Y  I  Y  F  Y  L  S   </first_frame>
            <second_frame>  V  Q  G  Q  L  H  S  L  L  P  G  Y  V  H  L  A  K  R  T  N  I  F  S  S  R  D  *  T  A  L  M  P  L  A  H  Q  V  D  R  S  A  L  R  K  Q  C  H  S  A  I  N  F  F  F  T  F  I  V  F  V  P  N  A  G  H  C  R  V  Q  N  Q  *  F  K  C  E  S  L  G  R  C  F  L  V  C  L  T  N  L  L  V  L  N  N  E  Q  Y  V  S  F  C  V  L  R  V  L  C  H  I  G  Y  A  C  L  F  V  Q  F  *  T  S  L  T  A  Y  *  C  T  L  K  V  G  A  H  S  Y  L  L  N  Q  V  K  D  H  V  Y  V  L  C  L  F  F  S  *  E  S  N  R  L  S  C  S  D  S  L  M  M  Q  H  L  Y  *  I  L  R  K  F  T  T  F  G  R  S  N  T  Q  L  S  R  S  L  K  T  L  S  N  I  A  T  T  F  S  I  Y  K  L  Q  R  L  Q  E  H  A  F  Y  *  T  N  N  L  G  R  H  R  D  V  T  E  L  S  L  Y  A  S  S  H  *  G  I  T  T  W  M  *  N  G  F  W  R  S  E  *  N  V  Y  S  I  F  E  R  *  L  E  A  V  S  N  R  P  F  G  S  R  K  M  E  I  L  T  S  L  S  S  S  S  F  H  *  Q  S  N  Q  *  K  I  G  Q  Q  R  R  I  E  N  V  S  Q  *  I  E  M  T  F  N  N  F  I  K  R  *  R  T  Y  N  R  H  H  K  H  I  I  *  N  L  K  Q  S  *  I  S  N  L  F  C  *  K  L  L  L  H  N  N  V  T  K  S  K  L  Q  R  *  S  Y  S  I  I  C  D  M  N  D  S  M  A  S  R  A  S  P  P  W  L  T  E  F  L  I  F  L  L  N  S  I  A  V  C  L  I  S  S  P  S  M  V  L  V  N  V  S  I  D  F  S  M  V  D  A  F  T  N  S  S  R  *  D  Q  H  L  T  V  I  P  I  S  N  K  L  V  T  S  I  A  L  N  G  *  S  K  L  I  G  L  V  A  I  G  T  P  M  L  M  L  S  I  H  E  F  H  P  Q  *  L  I  N  P  P  V  D  E  C  P  K  N  S  N  C  V  A  Q  L  T  I  I  P  L  P  S  T  L  T  S  N  P  S  G  N  S  I  F  T  T  L  S  L  S  F  S  A  L  S  P  F  L  S  T  Q  I  N  L  R  L  L  C  S  K  P  R  A  I  S  L  T  C  S  C  D  N  V  V  V  D  P  D  E  M  S  I  T  E  L  T  S  C  L  I  R  E  I  L  G  I  D  H  N  A  E  *  C  C  L  I  A  I  I  F  L  R  W  R  *  R  S  Q  Q  V  I  E  I  D  V  *  S  S  Y  I  T  L  N  A  K  F  Q  I  F  V  N  I  S  K  T  E  E  M  Y  L  *  F  H  F  *  L  R  S  P  Y  D  E  K  Y  I  Y  I  F  I  C  L  </second_frame>
            <third_frame>   S  K  D  N  F  I  L  F  F  L  A  M  F  T  L  Q  R  E  Q  I  F  S  V  V  E  I  E  L  H  S  C  L  S  R  I  K  L  T  V  P  P  Y  V  S  N  A  I  Q  P  L  T  S  S  L  H  S  L  C  L  Y  Q  M  Q  A  I  V  E  F  R  I  S  D  S  S  V  K  V  S  A  G  V  S  W  Y  A  S  Q  I  Y  L  F  *  T  M  N  N  M  F  H  F  V  S  Y  V  Y  Y  V  I  *  D  T  R  V  Y  L  F  N  F  K  Q  V  *  L  L  T  N  A  H  S  K  L  E  R  I  V  I  C  *  T  K  L  R  I  M  F  M  Y  Y  V  C  F  F  R  K  N  Q  I  G  *  V  A  R  T  L  *  *  C  N  T  C  I  R  S  S  E  N  S  L  L  L  E  D  P  T  H  N  C  R  D  L  *  R  L  *  A  T  *  Q  Q  R  F  R  Y  T  N  F  N  G  C  R  S  T  L  S  I  R  Q  I  T  L  V  D  I  E  T  *  Q  N  Y  L  F  T  P  L  L  I  K  E  *  R  L  G  C  E  M  G  F  G  G  Q  S  K  T  Y  I  Q  S  L  R  G  S  *  K  P  F  P  I  D  P  L  A  Q  G  K  W  K  Y  *  P  H  Y  L  H  Q  V  S  I  S  N  Q  I  N  R  R  *  G  N  K  E  G  L  K  M  S  L  N  R  L  K  *  L  S  I  I  L  L  S  V  E  G  L  T  I  D  I  I  N  T  *  F  E  I  *  N  N  L  K  Y  Q  T  Y  F  A  K  N  Y  Y  C  I  T  T  *  L  K  A  N  F  N  G  E  V  I  Q  L  Y  V  I  *  M  I  P  W  P  R  V  Q  V  L  R  G  *  Q  S  F  *  S  F  C  S  I  P  L  P  F  A  S  F  L  P  L  L  W  Y  S  S  M  S  R  *  I  S  L  W  L  M  L  L  P  I  H  R  G  E  T  N  T  *  Q  *  F  Q  S  P  T  N  *  L  Q  V  *  R  *  M  A  D  R  N  *  L  A  *  *  L  *  V  L  P  C  *  C  S  R  Y  M  N  S  I  H  S  D  S  *  T  P  L  S  M  N  V  P  R  I  L  I  V  L  P  N  *  P  L  F  L  F  L  P  L  L  L  Q  T  L  R  V  I  Q  S  L  R  L  Y  L  *  V  S  P  R  Y  L  L  F  L  V  P  K  *  I  Y  G  C  S  V  L  N  P  E  Q  S  H  *  L  A  L  V  I  T  *  S  L  I  Q  M  R  *  V  S  P  S  *  H  L  V  *  F  E  K  F  *  A  L  I  I  T  Q  S  D  V  A  *  S  R  S  F  F  C  V  G  D  E  G  L  N  R  L  S  K  *  M  F  E  A  L  T  S  P  *  T  R  S  F  K  Y  S  L  T  L  A  K  Q  R  K  C  T  C  N  F  I  F  N  *  D  R  P  M  M  R  N  I  Y  I  F  L  F  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45092" stop="44775"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LINPPVDECPKNSNCVAQLTIIPLPSTLTSNPSGNSIFTTLSLSFSALSPFLSTQINLRLLCSKPRAISLTCSCDNVVVDPDEMSITELTSCLIREILGIDHNAE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46501" stop="46226"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKDNFILFFLAMFTLQREQIFSVVEIELHSCLSRIKLTVPPYVSNAIQPLTSSLHSLCLYQMQAIVEFRISDSSVKVSAGVSWYASQIYLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="48520" PGL_stop="50180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48520" e_stop="50180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="48520" e_stop="50180" e_length="1661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48520" stop="50180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAATGGTCCAATATTATATTTGTTTTTTTCTACATTATCTTTGGTATTTATTAGTATGTTGCATCCCTGTTTGTATTGTCCATAACTCATTTTTTCTCAAAGTTCTTTCTCCTTTTTGTTGCTATGGCTGCTACCAATGAAGTCATTGTGGCCATGGTACCATTTTATGATTACAGCCATCTCAATAACCTCTTAGATCTCTCTCGTTTCATCGCGTCCCATAACATACCAGTACACTTCATCTCATTTGTTGATATGAACCGAGATTTGAAACTTCGTCTCAAAGGTAGTCCCGGGGCCTCAAACATCCATTTCGAAGACCTTTTGAGACCTTCAGCTCCAACAGAAAATGATGTTCGCGATGGAGAGCCTCCGATTCTAGTGTTCCTGGAAAAACTAACAAAGCCTATTAATGAAATATGTGTTCAACTCTCTACAAAAGCAAAAAAGTTAGTCATTGTTCATGACCTTATAATGAGTGAACAAATATTGGAAGTAAATACATTGTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAGGTAAGTACCCAGATTTACTTGCGAAAGCAAAAGGCAAGCCGTTATGGGCTTTTGGACCATTTCATATGCTGCTAGAATCAAACTCTAACATCACTCCGCGTCATGATCAATGTCTAGAATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAAAGGGCAGTGAAATTGAGCAAACAGATGAAAAACTCTGTTAGGAGCGGAGGACTTGCACGCAAGGATATGGAAGCTTTCATATCACATATTATTGAATAACTTCACCGTTGAAATTTGCTTTTAGTTACTGCATTCGCAAAATAAGTTGTTTAGTTTGAGATGAAGTTGAATTTTGGTTAAGTTGTTTGAGTTGTTGAATTTCAAATTAAGCAGATTATGAGTTTATGGTGGCTATTCAAAGCTAATAAAATTATTGACAGTCATTTCAATCCATTCAG</gDNA_template>
            <first_frame> K  K  W  S  N  I  I  F  V  F  F  Y  I  I  F  G  I  Y  *  Y  V  A  S  L  F  V  L  S  I  T  H  F  F  S  K  F  F  L  L  F  V  A  M  A  A  T  N  E  V  I  V  A  M  V  P  F  Y  D  Y  S  H  L  N  N  L  L  D  L  S  R  F  I  A  S  H  N  I  P  V  H  F  I  S  F  V  D  M  N  R  D  L  K  L  R  L  K  G  S  P  G  A  S  N  I  H  F  E  D  L  L  R  P  S  A  P  T  E  N  D  V  R  D  G  E  P  P  I  L  V  F  L  E  K  L  T  K  P  I  N  E  I  C  V  Q  L  S  T  K  A  K  K  L  V  I  V  H  D  L  I  M  S  E  Q  I  L  E  V  N  T  L  S  N  V  K  S  Y  M  F  H  T  G  S  T  F  S  R  Y  S  S  I  K  Q  T  I  P  D  L  V  D  D  D  D  D  H  V  K  F  I  K  E  M  Q  D  E  F  P  L  L  E  A  H  E  K  Y  C  F  Q  M  E  L  D  D  K  D  I  H  Y  S  G  E  I  I  N  S  C  R  E  M  E  G  K  Y  P  D  L  L  A  K  A  K  G  K  P  L  W  A  F  G  P  F  H  M  L  L  E  S  N  S  N  I  T  P  R  H  D  Q  C  L  E  F  L  D  K  Q  E  A  S  S  V  I  F  V  S  F  G  S  T  T  T  L  S  Q  E  Q  I  N  E  I  A  L  G  L  E  Q  S  N  H  R  F  I  W  V  L  R  K  G  D  N  S  E  K  L  K  E  K  D  V  K  I  E  L  P  K  G  F  E  E  R  V  E  G  R  G  I  V  V  N  W  A  P  Q  L  E  I  L  G  H  L  S  T  G  G  F  M  T  H  C  G  W  N  S  C  I  E  S  I  S  K  G  V  P  V  A  T  W  P  I  S  Y  D  Q  P  F  N  A  V  F  L  T  N  M  L  K  I  G  I  A  V  K  S  W  S  H  R  N  E  L  I  T  A  S  T  I  E  K  S  V  K  T  L  M  G  T  V  E  G  E  E  M  R  Q  R  A  V  K  L  S  K  Q  M  K  N  S  V  R  S  G  G  L  A  R  K  D  M  E  A  F  I  S  H  I  I  E  *  L  H  R  *  N  L  L  L  V  T  A  F  A  K  *  V  V  *  F  E  M  K  L  N  F  G  *  V  V  *  V  V  E  F  Q  I  K  Q  I  M  S  L  W  W  L  F  K  A  N  K  I  I  D  S  H  F  N  P  F   </first_frame>
            <second_frame>  K  N  G  P  I  L  Y  L  F  F  S  T  L  S  L  V  F  I  S  M  L  H  P  C  L  Y  C  P  *  L  I  F  S  Q  S  S  F  S  F  L  L  L  W  L  L  P  M  K  S  L  W  P  W  Y  H  F  M  I  T  A  I  S  I  T  S  *  I  S  L  V  S  S  R  P  I  T  Y  Q  Y  T  S  S  H  L  L  I  *  T  E  I  *  N  F  V  S  K  V  V  P  G  P  Q  T  S  I  S  K  T  F  *  D  L  Q  L  Q  Q  K  M  M  F  A  M  E  S  L  R  F  *  C  S  W  K  N  *  Q  S  L  L  M  K  Y  V  F  N  S  L  Q  K  Q  K  S  *  S  L  F  M  T  L  *  *  V  N  K  Y  W  K  *  I  H  C  R  M  S  K  V  T  C  S  I  Q  D  R  L  L  A  D  I  H  P  S  N  K  R  F  L  T  *  L  M  M  T  M  I  T  S  S  L  S  R  K  C  R  M  S  F  H  Y  W  R  H  M  R  N  I  V  S  K  W  S  L  M  T  R  I  Y  I  T  P  E  K  S  *  T  R  V  E  K  W  K  V  S  T  Q  I  Y  L  R  K  Q  K  A  S  R  Y  G  L  L  D  H  F  I  C  C  *  N  Q  T  L  T  S  L  R  V  M  I  N  V  *  N  F  S  T  S  K  R  P  A  Q  *  Y  S  C  H  L  D  Q  R  L  H  Y  H  R  S  K  S  M  R  L  L  W  V  *  N  R  V  I  T  D  L  F  G  Y  *  E  K  E  I  T  R  R  N  L  K  R  K  T  *  R  L  N  Y  Q  K  G  L  K  R  E  W  K  E  E  E  *  W  L  I  G  H  H  S  W  K  Y  W  G  I  Y  L  R  V  D  L  *  L  T  V  D  G  I  H  V  S  R  A  L  A  K  E  Y  L  *  Q  L  G  Q  S  V  T  I  S  H  L  T  L  Y  S  *  R  I  C  *  R  L  E  S  L  S  R  V  G  L  T  A  M  N  *  *  Q  H  Q  P  L  R  N  L  S  R  R  *  W  V  R  *  K  G  K  R  *  G  K  G  Q  *  N  *  A  N  R  *  K  T  L  L  G  A  E  D  L  H  A  R  I  W  K  L  S  Y  H  I  L  L  N  N  F  T  V  E  I  C  F  *  L  L  H  S  Q  N  K  L  F  S  L  R  *  S  *  I  L  V  K  L  F  E  L  L  N  F  K  L  S  R  L  *  V  Y  G  G  Y  S  K  L  I  K  L  L  T  V  I  S  I  H  S  </second_frame>
            <third_frame>   K  M  V  Q  Y  Y  I  C  F  F  L  H  Y  L  W  Y  L  L  V  C  C  I  P  V  C  I  V  H  N  S  F  F  L  K  V  L  S  P  F  C  C  Y  G  C  Y  Q  *  S  H  C  G  H  G  T  I  L  *  L  Q  P  S  Q  *  P  L  R  S  L  S  F  H  R  V  P  *  H  T  S  T  L  H  L  I  C  *  Y  E  P  R  F  E  T  S  S  Q  R  *  S  R  G  L  K  H  P  F  R  R  P  F  E  T  F  S  S  N  R  K  *  C  S  R  W  R  A  S  D  S  S  V  P  G  K  T  N  K  A  Y  *  *  N  M  C  S  T  L  Y  K  S  K  K  V  S  H  C  S  *  P  Y  N  E  *  T  N  I  G  S  K  Y  I  V  E  C  Q  K  L  H  V  P  Y  R  I  D  F  *  Q  I  F  I  H  Q  T  N  D  S  *  L  S  *  *  *  R  *  S  R  Q  V  Y  Q  G  N  A  G  *  V  S  I  T  G  G  T  *  E  I  L  F  P  N  G  A  *  *  Q  G  Y  T  L  L  R  R  N  H  K  L  V  *  R  N  G  R  *  V  P  R  F  T  C  E  S  K  R  Q  A  V  M  G  F  W  T  I  S  Y  A  A  R  I  K  L  *  H  H  S  A  S  *  S  M  S  R  I  S  R  Q  A  R  G  Q  L  S  D  I  R  V  I  W  I  N  D  Y  I  I  T  G  A  N  Q  *  D  C  S  G  F  R  T  E  *  S  Q  I  Y  L  G  T  K  K  R  R  *  L  G  E  T  *  R  E  R  R  K  D  *  I  T  K  R  V  *  R  E  S  G  R  K  R  N  S  G  *  L  G  T  T  V  G  N  I  G  A  F  I  Y  G  W  I  Y  D  S  L  W  M  E  F  M  Y  R  E  H  *  Q  R  S  T  C  S  N  L  A  N  Q  L  R  S  A  I  *  R  C  I  P  N  E  Y  V  E  D  W  N  R  C  Q  E  L  V  S  P  Q  *  T  D  N  S  I  N  H  *  E  I  C  Q  D  V  D  G  Y  G  R  R  G  R  D  E  A  K  G  S  E  I  E  Q  T  D  E  K  L  C  *  E  R  R  T  C  T  Q  G  Y  G  S  F  H  I  T  Y  Y  *  I  T  S  P  L  K  F  A  F  S  Y  C  I  R  K  I  S  C  L  V  *  D  E  V  E  F  W  L  S  C  L  S  C  *  I  S  N  *  A  D  Y  E  F  M  V  A  I  Q  S  *  *  N  Y  *  Q  S  F  Q  S  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48577" stop="50001"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1422</number_coding_nucleotides>
                  <number_encoded_amino_acids>474</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVASLFVLSITHFFSKFFLLFVAMAATNEVIVAMVPFYDYSHLNNLLDLSRFIASHNIPVHFISFVDMNRDLKLRLKGSPGASNIHFEDLLRPSAPTENDVRDGEPPILVFLEKLTKPINEICVQLSTKAKKLVIVHDLIMSEQILEVNTLSNVKSYMFHTGSTFSRYSSIKQTIPDLVDDDDDHVKFIKEMQDEFPLLEAHEKYCFQMELDDKDIHYSGEIINSCREMEGKYPDLLAKAKGKPLWAFGPFHMLLESNSNITPRHDQCLEFLDKQEASSVIFVSFGSTTTLSQEQINEIALGLEQSNHRFIWVLRKGDNSEKLKEKDVKIELPKGFEERVEGRGIVVNWAPQLEILGHLSTGGFMTHCGWNSCIESISKGVPVATWPISYDQPFNAVFLTNMLKIGIAVKSWSHRNELITASTIEKSVKTLMGTVEGEEMRQRAVKLSKQMKNSVRSGGLARKDMEAFISHIIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49029" e_stop="49267"/>
            <exon e_start="49385" e_stop="49902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.628" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49029" e_stop="49267" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.628" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49268" i_stop="49384" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="49385" e_stop="49902" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49029" stop="49267"/>
              <exon start="49385" stop="49902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564533" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCGAATGTCAAAAGTTACATGTTCCATACAGGATCGACTTTTAGCAGATATTCATCCATCAAACAAACGATTCCTGACTTAGTTGATGATGACGATGATCACGTCAAGTTTATCAAGGAAATGCAGGATGAGTTTCCATTACTGGAGGCACATGAGAAATATTGTTTCCAAATGGAGCTTGATGACAAGGATATACATTACTCCGGAGAAATCATAAACTCGTGTAGAGAAATGGAAG : AATTTCTCGACAAGCAAGAGGCCAGCTCAGTGATATTCGTGTCATTTGGATCAACGACTACATTATCACAGGAGCAAATCAATGAGATTGCTCTGGGTTTAGAACAGAGTAATCACAGATTTATTTGGGTACTAAGAAAAGGAGATAACTCGGAGAAACTTAAAGAGAAAGACGTAAAGATTGAATTACCAAAAGGGTTTGAAGAGAGAGTGGAAGGAAGAGGAATAGTGGTTAATTGGGCACCACAGTTGGAAATATTGGGGCATTTATCTACGGGTGGATTTATGACTCACTGTGGATGGAATTCATGTATCGAGAGCATTAGCAAAGGAGTACCTGTAGCAACTTGGCCAATCAGTTACGATCAGCCATTTAACGCTGTATTCCTAACGAATATGTTGAAGATTGGAATCGCTGTCAAGAGTTGGTCTCACCGCAATGAACTGATAACAGCATCAACCATTGAGAAATCTGTCAAGACGTTGATGGGTACGGTAGAAGGGGAAGAGATGAGGCAA</gDNA_template>
            <first_frame> V  E  C  Q  K  L  H  V  P  Y  R  I  D  F  *  Q  I  F  I  H  Q  T  N  D  S  *  L  S  *  *  *  R  *  S  R  Q  V  Y  Q  G  N  A  G  *  V  S  I  T  G  G  T  *  E  I  L  F  P  N  G  A  *  *  Q  G  Y  T  L  L  R  R  N  H  K  L  V  *  R  N  G  R :   I  S  R  Q  A  R  G  Q  L  S  D  I  R  V  I  W  I  N  D  Y  I  I  T  G  A  N  Q  *  D  C  S  G  F  R  T  E  *  S  Q  I  Y  L  G  T  K  K  R  R  *  L  G  E  T  *  R  E  R  R  K  D  *  I  T  K  R  V  *  R  E  S  G  R  K  R  N  S  G  *  L  G  T  T  V  G  N  I  G  A  F  I  Y  G  W  I  Y  D  S  L  W  M  E  F  M  Y  R  E  H  *  Q  R  S  T  C  S  N  L  A  N  Q  L  R  S  A  I  *  R  C  I  P  N  E  Y  V  E  D  W  N  R  C  Q  E  L  V  S  P  Q  *  T  D  N  S  I  N  H  *  E  I  C  Q  D  V  D  G  Y  G  R  R  G  R  D  E  A  </first_frame>
            <second_frame>  S  N  V  K  S  Y  M  F  H  T  G  S  T  F  S  R  Y  S  S  I  K  Q  T  I  P  D  L  V  D  D  D  D  D  H  V  K  F  I  K  E  M  Q  D  E  F  P  L  L  E  A  H  E  K  Y  C  F  Q  M  E  L  D  D  K  D  I  H  Y  S  G  E  I  I  N  S  C  R  E  M  E   : E  F  L  D  K  Q  E  A  S  S  V  I  F  V  S  F  G  S  T  T  T  L  S  Q  E  Q  I  N  E  I  A  L  G  L  E  Q  S  N  H  R  F  I  W  V  L  R  K  G  D  N  S  E  K  L  K  E  K  D  V  K  I  E  L  P  K  G  F  E  E  R  V  E  G  R  G  I  V  V  N  W  A  P  Q  L  E  I  L  G  H  L  S  T  G  G  F  M  T  H  C  G  W  N  S  C  I  E  S  I  S  K  G  V  P  V  A  T  W  P  I  S  Y  D  Q  P  F  N  A  V  F  L  T  N  M  L  K  I  G  I  A  V  K  S  W  S  H  R  N  E  L  I  T  A  S  T  I  E  K  S  V  K  T  L  M  G  T  V  E  G  E  E  M  R  Q </second_frame>
            <third_frame>   R  M  S  K  V  T  C  S  I  Q  D  R  L  L  A  D  I  H  P  S  N  K  R  F  L  T  *  L  M  M  T  M  I  T  S  S  L  S  R  K  C  R  M  S  F  H  Y  W  R  H  M  R  N  I  V  S  K  W  S  L  M  T  R  I  Y  I  T  P  E  K  S  *  T  R  V  E  K  W  K  :  N  F  S  T  S  K  R  P  A  Q  *  Y  S  C  H  L  D  Q  R  L  H  Y  H  R  S  K  S  M  R  L  L  W  V  *  N  R  V  I  T  D  L  F  G  Y  *  E  K  E  I  T  R  R  N  L  K  R  K  T  *  R  L  N  Y  Q  K  G  L  K  R  E  W  K  E  E  E  *  W  L  I  G  H  H  S  W  K  Y  W  G  I  Y  L  R  V  D  L  *  L  T  V  D  G  I  H  V  S  R  A  L  A  K  E  Y  L  *  Q  L  G  Q  S  V  T  I  S  H  L  T  L  Y  S  *  R  I  C  *  R  L  E  S  L  S  R  V  G  L  T  A  M  N  *  *  Q  H  Q  P  L  R  N  L  S  R  R  *  W  V  R  *  K  G  K  R  *  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49030" stop="49267"/>
                    <exon start="49385" stop="49902"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNVKSYMFHTGSTFSRYSSIKQTIPDLVDDDDDHVKFIKEMQDEFPLLEAHEKYCFQMELDDKDIHYSGEIINSCREMEEFLDKQEASSVIFVSFGSTTTLSQEQINEIALGLEQSNHRFIWVLRKGDNSEKLKEKDVKIELPKGFEERVEGRGIVVNWAPQLEILGHLSTGGFMTHCGWNSCIESISKGVPVATWPISYDQPFNAVFLTNMLKIGIAVKSWSHRNELITASTIEKSVKTLMGTVEGEEMRQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="64104" PGL_stop="71704"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64104" e_stop="64482"/>
            <exon e_start="67519" e_stop="67590"/>
            <exon e_start="67899" e_stop="68000"/>
            <exon e_start="68297" e_stop="68488"/>
            <exon e_start="68950" e_stop="69404"/>
            <exon e_start="69495" e_stop="70196"/>
            <exon e_start="70277" e_stop="71704"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.987" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.941" e_score="0.998"/>
          <exon-intron don_prob="0.899" acc_prob="0.999" e_score="0.999"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="64104" e_stop="64482" e_length="379"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.987">
            <gDNA_intron_boundary i_start="64483" i_stop="67518" i_length="3036"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67519" e_stop="67590" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67899" e_stop="68000" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68297" e_stop="68488" e_length="192"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68489" i_stop="68949" i_length="461"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="68950" e_stop="69404" e_length="455"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.941">
            <gDNA_intron_boundary i_start="69405" i_stop="69494" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.999">
            <gDNA_exon_boundary e_start="69495" e_stop="70196" e_length="702"/>
          </exon>
          <intron i_serial="6" don_prob="0.899" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70197" i_stop="70276" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="70277" e_stop="71704" e_length="1428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64104" stop="64482"/>
              <exon start="67519" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="69404"/>
              <exon start="69495" stop="70196"/>
              <exon start="70277" stop="71704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAGAGAAGAGAGGAAAAGCAATATCTCTCTTTCTCTCTCTCTCTAAAAATTCTTACTTTCTCTCTCTAAAAATCTAATCTTTTGTATCTCTATACACATATAGATACACGTTTATCTGTATCTATAGCTTTTTGTTGATTCGTTTTTGGTTTAGATTTGCCATTTTTCTTTTTGTGTGTGGAGGTGTTCGAATTGATCGGACTGTGGAGAATTGAGGTATGCAGGCTGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGTAACAGAGGTGGTGGAAGCAGAGTATTTGGCTCTCGCTTTGATACCTCATCTACCAATTCTGATCTCTCAGGTTTTCGTCCTCATGGAGGTTCTTCATCTTTGCCATCTTTCAAG : ACTGGAGATTCTCGTTTTGACAGCCATGAACGTGTTCGCTATACTCGAGATCAGCTCCTGCAACTGAGGGAG : GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT : GTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGG : GGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGGGTAATCTTTCTGGAAATTCTAGTTAATGCTTTTAACAAGTTCTGTATTATAATTCCAAGCTATTTTTTCACCACATCTTGAAAGTAGGGAACTGCATTTCTTCTGTACTACCTTTTCTCTATTCATGGATATAATAAGCCGTCATTGCAAATAAATAAAAAGGTTTCAATACGGTCTTGGTTTCAGATGTAGTTTGCACATTCTTTTAAGGTGAATTTTAGGATATCCTTATTTGTACATGATTGATGCAAGTATTATCGATCTTGCAGAATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAG : GGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGTTATTGATTGTTTTCTATTAGCTTAATAATCTTCTTGGTCCTTTCCCTCATAAATGTAACCAATATATCAATTTTGTGGAAAATTGTCTTCCTGATCTTGCTTACAGGAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATTTCAACCAATTGAAAGAACTATCGACAAACCCTCAGCTGGTAGCACGCCTAAGGTTTTTGGTTCGTGATGTGCTGGATTTACGTGCCAATAACTGGGTCCCTAGGCGGGAAGAG : GTGAAAGCCAAAACCATTAACGAGATCCACTCGGAAGCAGAGAAGACCTTGGGGTTGCGTCCTGGTGCTACATTAAGCATTAGAAATGCTCGTGCTCCTCCAGGTATTCAAGGGAATTTGGGTCCTGGTGGCTATCCCATTAATCGACCCGGCACTGGTGGTATGATGCCAGGGATGCCAGGAGCAAGGAAGATGCCTGGGATGCCAGGAATGGATAATGACAACTGGGAAGTTCCTAGGTCACGAATGCCGAGAGGTGCTCAGCAACCATTGATTGGGAAGTCGCCGGCCTTGAACACAAGACTGTTGCCTCAGGGTAGCAATGTCGGCATGAGTGGCAGGAGTAGTGCTCTCTTACAAGGTAGTGGTGGACCTCCTGTCCGACCATCAGGCTATGTCTCTGGTATGGAGCCTGTATCACAAGTTCCAGTACCAGTTAAGCCATCTCCAACTAGTACCGTTTTGCCTGTTGCTGGGAAACCTCAGGCTCCAGCTGCAAGGTCAAATCCTGAGGAGCTGAAAAGAAAAACAGTTTCACTTTTGGAGGAATATTTTAGTGTTCGGATTTTGGATGAAGCCTTACAGTGCATTGAGGAACTCAAATCCCCTGCCTTCTATCCTGAGGTTGTCGAGAAAGCCATATCACTCGGACTGGACAAAAGCCCACCACGCGTTGAACCAGTTGCACAACTTCTTGAGCACTTGTCTGCTGAAAAGGTTTTTACTGCTACAGACTTGGCTACTGGATGCTTGAACTTTGCTTCTCAATTGGAAGATCTTGCAATGGATTTACCAAAAGCACCAGCAAATTTCGGGGAGATAATTTCGAGGCTAGTTTTGACGGGGGCAATGGACTTCAAGTTGGTGAATGAGATCCTGCAGAAGGTAACCGATGACTTATACCAGAAGGACTTATTTGCTGCCATCATGAAAGCTATTAGCTCTAGCCCTACTGGTCAAGGAGTGTTAGACTCACAAGCACCTGATGTCAAAGCCTGCAAAAATCTGTTCCAGTAAAAAGCTCAAATCCTCGTCAATGGAATGTGCTCCATATCACTTATCCTCGAGATGGCCTTTCCGTTGTGCTCAGTGGACTAAAGCAGCTGTATCACAGTTTTTCATCATTGGAACTGTAGTAAAGGACAGGTGAGTTTATGTGAGTTGTATACTTTTCCCAAAGTGTGTTCATTAGACGACGAAAGACAGTTTTGCAACATGGTAAATTATACGCCATATTTGCTTGAGGCAACGGGCTGCTTGACGGAGTCCAGCCGTTTTGTATTACATTAGTTTTTCATTTATTTTTTCCCGTTGACTTGTTATATTAAGTTTTGTCGAACTTGTGAGTTCATAAAATGCAACTGTTCCTATCTTTACACCATTTTAAAGCTGAATTTGATAACGTAAGTTTGTCTTCAGTTTATCTCT</gDNA_template>
            <first_frame> S  R  E  E  R  K  S  N  I  S  L  S  L  S  L  *  K  F  L  L  S  L  S  K  N  L  I  F  C  I  S  I  H  I  *  I  H  V  Y  L  Y  L  *  L  F  V  D  S  F  L  V  *  I  C  H  F  S  F  C  V  W  R  C  S  N  *  S  D  C  G  E  L  R  Y  A  G  *  S  D  G  D  K  F  E  T  R  W  W  *  Q  R  W  W  K  Q  S  I  W  L  S  L  *  Y  L  I  Y  Q  F  *  S  L  R  F  S  S  S  W  R  F  F  I  F  A  I  F  Q   : D  W  R  F  S  F  *  Q  P  *  T  C  S  L  Y  S  R  S  A  P  A  T  E  G   : G  G  C  L  T  V  T  *  G  Y  S  A  N  Q  T  R  S  *  S  *  T  V  W  G  R  F  L  S  G  S  C  G  *  Q   : C  A  G  A  V  S  G  S  L  F  *  T  R  Q  S  *  L  A  *  *  A  S  T  I  F  C  P  H  R  G  E  V  M  G  S  T  S  R  K  Q  G  I  W  W  P  V  Y  S  A  R  A  I  T  V  C  K  S  S  S  F  C  Q  S  R   : G  R  S  C  S  Y  T  D  Q  S  *  G  A  M  V  S  S  K  G  H  S  F  *  Q  R  S  C  L  E  N  S  Q  G  V  I  F  L  E  I  L  V  N  A  F  N  K  F  C  I  I  I  P  S  Y  F  F  T  T  S  *  K  *  G  T  A  F  L  L  Y  Y  L  F  S  I  H  G  Y  N  K  P  S  L  Q  I  N  K  K  V  S  I  R  S  W  F  Q  M  *  F  A  H  S  F  K  V  N  F  R  I  S  L  F  V  H  D  *  C  K  Y  Y  R  S  C  R  I  L  N  K  L  T  P  E  K  F  D  L  L  K  G  Q  L  I  D  S  G  I  T  S  A  D  I  L  E  :  G  V  I  S  L  I  F  D  K  A  V  L  E  P  T  F  C  P  M  Y  A  Q  L  C  S  D  L  N  E  K  L  P  P  F  P  S  D  E  P  G  G  K  E  I  T  F  K  R  V  L  L  N  N  C  Q  E  A  F  E  G  S  D  K  L  R  E  E  M  R  R  M  T  A  P  E  Q  E  S  E  R  K  D  K  E  R  L  I  K  L  R  T  L  G  N  I  R  L  I  G  E  L  L  K  Q  N  M  V  P  E  K  I  V  H  H  I  V  Q  V  I  D  C  F  L  L  A  *  *  S  S  W  S  F  P  S  *  M  *  P  I  Y  Q  F  C  G  K  L  S  S  *  S  C  L  Q  E  L  L  G  Q  D  P  K  S  C  P  E  E  E  N  V  E  A  I  C  Q  F  F  N  T  I  G  K  Q  L  D  K  K  Q  K  S  R  H  I  N  D  I  Y  F  N  Q  L  K  E  L  S  T  N  P  Q  L  V  A  R  L  R  F  L  V  R  D  V  L  D  L  R  A  N  N  W  V  P  R  R  E  E  :  V  K  A  K  T  I  N  E  I  H  S  E  A  E  K  T  L  G  L  R  P  G  A  T  L  S  I  R  N  A  R  A  P  P  G  I  Q  G  N  L  G  P  G  G  Y  P  I  N  R  P  G  T  G  G  M  M  P  G  M  P  G  A  R  K  M  P  G  M  P  G  M  D  N  D  N  W  E  V  P  R  S  R  M  P  R  G  A  Q  Q  P  L  I  G  K  S  P  A  L  N  T  R  L  L  P  Q  G  S  N  V  G  M  S  G  R  S  S  A  L  L  Q  G  S  G  G  P  P  V  R  P  S  G  Y  V  S  G  M  E  P  V  S  Q  V  P  V  P  V  K  P  S  P  T  S  T  V  L  P  V  A  G  K  P  Q  A  P  A  A  R  S  N  P  E  E  L  K  R  K  T  V  S  L  L  E  E  Y  F  S  V  R  I  L  D  E  A  L  Q  C  I  E  E  L  K  S  P  A  F  Y  P  E  V  V  E  K  A  I  S  L  G  L  D  K  S  P  P  R  V  E  P  V  A  Q  L  L  E  H  L  S  A  E  K  V  F  T  A  T  D  L  A  T  G  C  L  N  F  A  S  Q  L  E  D  L  A  M  D  L  P  K  A  P  A  N  F  G  E  I  I  S  R  L  V  L  T  G  A  M  D  F  K  L  V  N  E  I  L  Q  K  V  T  D  D  L  Y  Q  K  D  L  F  A  A  I  M  K  A  I  S  S  S  P  T  G  Q  G  V  L  D  S  Q  A  P  D  V  K  A  C  K  N  L  F  Q  *  K  A  Q  I  L  V  N  G  M  C  S  I  S  L  I  L  E  M  A  F  P  L  C  S  V  D  *  S  S  C  I  T  V  F  H  H  W  N  C  S  K  G  Q  V  S  L  C  E  L  Y  T  F  P  K  V  C  S  L  D  D  E  R  Q  F  C  N  M  V  N  Y  T  P  Y  L  L  E  A  T  G  C  L  T  E  S  S  R  F  V  L  H  *  F  F  I  Y  F  F  P  L  T  C  Y  I  K  F  C  R  T  C  E  F  I  K  C  N  C  S  Y  L  Y  T  I  L  K  L  N  L  I  T  *  V  C  L  Q  F  I  S </first_frame>
            <second_frame>  V  E  K  R  G  K  A  I  S  L  F  L  S  L  S  K  N  S  Y  F  L  S  L  K  I  *  S  F  V  S  L  Y  T  Y  R  Y  T  F  I  C  I  Y  S  F  L  L  I  R  F  W  F  R  F  A  I  F  L  F  V  C  G  G  V  R  I  D  R  T  V  E  N  *  G  M  Q  A  D  Q  T  V  I  S  L  R  P  G  G  G  N  R  G  G  G  S  R  V  F  G  S  R  F  D  T  S  S  T  N  S  D  L  S  G  F  R  P  H  G  G  S  S  S  L  P  S  F  K  :  T  G  D  S  R  F  D  S  H  E  R  V  R  Y  T  R  D  Q  L  L  Q  L  R  E  :  A  V  V  L  Q  L  P  E  V  I  L  Q  I  K  H  E  V  E  A  E  L  F  G  E  D  S  S  R  G  R  V  D  S  N  :  V  Q  V  Q  S  Q  G  R  Y  S  E  P  D  N  R  D  W  R  N  R  P  A  Q  F  S  A  P  I  E  E  R  S  W  E  A  L  R  E  N  R  E  F  G  G  Q  Y  T  R  Q  E  Q  S  Q  F  A  R  A  Q  V  S  A  N  Q  G  :  G  G  P  A  P  T  L  I  K  A  E  V  P  W  S  V  R  R  G  T  L  S  D  K  D  R  V  L  K  T  V  K  G  *  S  F  W  K  F  *  L  M  L  L  T  S  S  V  L  *  F  Q  A  I  F  S  P  H  L  E  S  R  E  L  H  F  F  C  T  T  F  S  L  F  M  D  I  I  S  R  H  C  K  *  I  K  R  F  Q  Y  G  L  G  F  R  C  S  L  H  I  L  L  R  *  I  L  G  Y  P  Y  L  Y  M  I  D  A  S  I  I  D  L  A  E  Y  L  T  S  *  P  Q  R  N  L  I  F  S  K  A  N  *  *  I  Q  G  *  Q  V  Q  T  F  W  R :   V  *  S  P  *  Y  L  T  R  L  Y  W  N  P  P  F  A  R  C  M  P  S  C  V  L  I  S  T  R  S  F  L  H  F  H  L  M  N  L  V  G  K  K  S  R  L  S  E  F  F  *  I  I  A  K  R  H  L  K  V  L  T  N  *  G  K  R  *  D  E  *  L  L  R  S  R  S  R  N  A  R  T  K  K  G  *  S  N  C  A  L  L  E  T  Y  V  L  L  G  S  Y  *  S  K  I  W  F  L  K  R  L  F  I  T  L  F  R  L  L  I  V  F  Y  *  L  N  N  L  L  G  P  F  P  H  K  C  N  Q  Y  I  N  F  V  E  N  C  L  P  D  L  A  Y  R  N  Y  *  D  K  I  P  K  A  V  Q  K  K  R  M  L  K  L  Y  V  S  S  L  T  P  L  V  S  S  L  T  R  S  K  S  R  G  T  S  M  I  Y  I  S  T  N  *  K  N  Y  R  Q  T  L  S  W  *  H  A  *  G  F  W  F  V  M  C  W  I  Y  V  P  I  T  G  S  L  G  G  K  R :   *  K  P  K  P  L  T  R  S  T  R  K  Q  R  R  P  W  G  C  V  L  V  L  H  *  A  L  E  M  L  V  L  L  Q  V  F  K  G  I  W  V  L  V  A  I  P  L  I  D  P  A  L  V  V  *  C  Q  G  C  Q  E  Q  G  R  C  L  G  C  Q  E  W  I  M  T  T  G  K  F  L  G  H  E  C  R  E  V  L  S  N  H  *  L  G  S  R  R  P  *  T  Q  D  C  C  L  R  V  A  M  S  A  *  V  A  G  V  V  L  S  Y  K  V  V  V  D  L  L  S  D  H  Q  A  M  S  L  V  W  S  L  Y  H  K  F  Q  Y  Q  L  S  H  L  Q  L  V  P  F  C  L  L  L  G  N  L  R  L  Q  L  Q  G  Q  I  L  R  S  *  K  E  K  Q  F  H  F  W  R  N  I  L  V  F  G  F  W  M  K  P  Y  S  A  L  R  N  S  N  P  L  P  S  I  L  R  L  S  R  K  P  Y  H  S  D  W  T  K  A  H  H  A  L  N  Q  L  H  N  F  L  S  T  C  L  L  K  R  F  L  L  L  Q  T  W  L  L  D  A  *  T  L  L  L  N  W  K  I  L  Q  W  I  Y  Q  K  H  Q  Q  I  S  G  R  *  F  R  G  *  F  *  R  G  Q  W  T  S  S  W  *  M  R  S  C  R  R  *  P  M  T  Y  T  R  R  T  Y  L  L  P  S  *  K  L  L  A  L  A  L  L  V  K  E  C  *  T  H  K  H  L  M  S  K  P  A  K  I  C  S  S  K  K  L  K  S  S  S  M  E  C  A  P  Y  H  L  S  S  R  W  P  F  R  C  A  Q  W  T  K  A  A  V  S  Q  F  F  I  I  G  T  V  V  K  D  R  *  V  Y  V  S  C  I  L  F  P  K  C  V  H  *  T  T  K  D  S  F  A  T  W  *  I  I  R  H  I  C  L  R  Q  R  A  A  *  R  S  P  A  V  L  Y  Y  I  S  F  S  F  I  F  S  R  *  L  V  I  L  S  F  V  E  L  V  S  S  *  N  A  T  V  P  I  F  T  P  F  *  S  *  I  *  *  R  K  F  V  F  S  L  S   </second_frame>
            <third_frame>   *  R  R  E  E  K  Q  Y  L  S  F  S  L  S  L  K  I  L  T  F  S  L  *  K  S  N  L  L  Y  L  Y  T  H  I  D  T  R  L  S  V  S  I  A  F  C  *  F  V  F  G  L  D  L  P  F  F  F  L  C  V  E  V  F  E  L  I  G  L  W  R  I  E  V  C  R  L  I  R  R  *  *  V  *  D  Q  V  V  V  T  E  V  V  E  A  E  Y  L  A  L  A  L  I  P  H  L  P  I  L  I  S  Q  V  F  V  L  M  E  V  L  H  L  C  H  L  S  R :   L  E  I  L  V  L  T  A  M  N  V  F  A  I  L  E  I  S  S  C  N  *  G  R :   R  L  S  Y  S  Y  L  R  L  F  C  K  S  N  T  K  L  K  L  N  C  L  G  K  I  P  L  G  V  V  W  I  A  M :   C  R  C  S  L  R  V  V  I  L  N  Q  T  I  V  T  G  V  I  G  Q  H  N  F  L  P  P  *  R  R  G  H  G  K  H  F  E  K  T  G  N  L  V  A  S  I  L  G  K  S  N  H  S  L  Q  E  L  K  F  L  P  I  K  G :   E  V  L  L  L  H  *  S  K  L  R  C  H  G  Q  F  E  G  A  L  F  L  T  K  I  V  S  *  K  Q  S  R  G  N  L  S  G  N  S  S  *  C  F  *  Q  V  L  Y  Y  N  S  K  L  F  F  H  H  I  L  K  V  G  N  C  I  S  S  V  L  P  F  L  Y  S  W  I  *  *  A  V  I  A  N  K  *  K  G  F  N  T  V  L  V  S  D  V  V  C  T  F  F  *  G  E  F  *  D  I  L  I  C  T  *  L  M  Q  V  L  S  I  L  Q  N  T  *  Q  V  D  P  R  E  I  *  S  S  Q  R  P  I  N  R  F  R  D  N  K  C  R  H  S  G   : G  C  D  L  L  D  I  *  Q  G  C  I  G  T  H  L  L  P  D  V  C  P  V  V  F  *  S  Q  R  E  A  S  S  I  S  I  *  *  T  W  W  E  R  N  H  V  *  A  S  S  S  E  *  L  P  R  G  I  *  R  F  *  Q  T  E  G  R  D  E  T  N  D  C  S  G  A  G  V  G  T  Q  G  Q  R  K  V  D  Q  I  A  H  S  W  K  H  T  S  Y  W  G  A  I  E  A  K  Y  G  S  *  K  D  C  S  S  H  C  S  G  Y  *  L  F  S  I  S  L  I  I  F  L  V  L  S  L  I  N  V  T  N  I  S  I  L  W  K  I  V  F  L  I  L  L  T  G  T  I  R  T  R  S  Q  K  L  S  R  R  R  E  C  *  S  Y  M  S  V  L  *  H  H  W  *  A  A  *  Q  E  A  K  V  E  A  H  Q  *  Y  I  F  Q  P  I  E  R  T  I  D  K  P  S  A  G  S  T  P  K  V  F  G  S  *  C  A  G  F  T  C  Q  *  L  G  P  *  A  G  R   : G  E  S  Q  N  H  *  R  D  P  L  G  S  R  E  D  L  G  V  A  S  W  C  Y  I  K  H  *  K  C  S  C  S  S  R  Y  S  R  E  F  G  S  W  W  L  S  H  *  S  T  R  H  W  W  Y  D  A  R  D  A  R  S  K  E  D  A  W  D  A  R  N  G  *  *  Q  L  G  S  S  *  V  T  N  A  E  R  C  S  A  T  I  D  W  E  V  A  G  L  E  H  K  T  V  A  S  G  *  Q  C  R  H  E  W  Q  E  *  C  S  L  T  R  *  W  W  T  S  C  P  T  I  R  L  C  L  W  Y  G  A  C  I  T  S  S  S  T  S  *  A  I  S  N  *  Y  R  F  A  C  C  W  E  T  S  G  S  S  C  K  V  K  S  *  G  A  E  K  K  N  S  F  T  F  G  G  I  F  *  C  S  D  F  G  *  S  L  T  V  H  *  G  T  Q  I  P  C  L  L  S  *  G  C  R  E  S  H  I  T  R  T  G  Q  K  P  T  T  R  *  T  S  C  T  T  S  *  A  L  V  C  *  K  G  F  Y  C  Y  R  L  G  Y  W  M  L  E  L  C  F  S  I  G  R  S  C  N  G  F  T  K  S  T  S  K  F  R  G  D  N  F  E  A  S  F  D  G  G  N  G  L  Q  V  G  E  *  D  P  A  E  G  N  R  *  L  I  P  E  G  L  I  C  C  H  H  E  S  Y  *  L  *  P  Y  W  S  R  S  V  R  L  T  S  T  *  C  Q  S  L  Q  K  S  V  P  V  K  S  S  N  P  R  Q  W  N  V  L  H  I  T  Y  P  R  D  G  L  S  V  V  L  S  G  L  K  Q  L  Y  H  S  F  S  S  L  E  L  *  *  R  T  G  E  F  M  *  V  V  Y  F  S  Q  S  V  F  I  R  R  R  K  T  V  L  Q  H  G  K  L  Y  A  I  F  A  *  G  N  G  L  L  D  G  V  Q  P  F  C  I  T  L  V  F  H  L  F  F  P  V  D  L  L  Y  *  V  L  S  N  L  *  V  H  K  M  Q  L  F  L  S  L  H  H  F  K  A  E  F  D  N  V  S  L  S  S  V  Y  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69942" stop="70196"/>
                    <exon start="70277" stop="71293"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1269</number_coding_nucleotides>
                  <number_encoded_amino_acids>423</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCLQELLGQDPKSCPEEENVEAICQFFNTIGKQLDKKQKSRHINDIYFNQLKELSTNPQLVARLRFLVRDVLDLRANNWVPRREEVKAKTINEIHSEAEKTLGLRPGATLSIRNARAPPGIQGNLGPGGYPINRPGTGGMMPGMPGARKMPGMPGMDNDNWEVPRSRMPRGAQQPLIGKSPALNTRLLPQGSNVGMSGRSSALLQGSGGPPVRPSGYVSGMEPVSQVPVPVKPSPTSTVLPVAGKPQAPAARSNPEELKRKTVSLLEEYFSVRILDEALQCIEELKSPAFYPEVVEKAISLGLDKSPPRVEPVAQLLEHLSAEKVFTATDLATGCLNFASQLEDLAMDLPKAPANFGEIISRLVLTGAMDFKLVNEILQKVTDDLYQKDLFAAIMKAISSSPTGQGVLDSQAPDVKACKNLFQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64321" stop="64482"/>
                    <exon start="67519" stop="67590"/>
                    <exon start="67899" stop="68000"/>
                    <exon start="68297" stop="68488"/>
                    <exon start="68950" stop="69051"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMQADQTVISLRPGGGNRGGGSRVFGSRFDTSSTNSDLSGFRPHGGSSSLPSFKTGDSRFDSHERVRYTRDQLLQLREAVVLQLPEVILQIKHEVEAELFGEDSSRGRVDSNVQVQSQGRYSEPDNRDWRNRPAQFSAPIEERSWEALRENREFGGQYTRQEQSQFARAQVSANQGGGPAPTLIKAEVPWSVRRGTLSDKDRVLKTVKG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69294" stop="69404"/>
                    <exon start="69495" stop="69872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKYYRSCRILNKLTPEKFDLLKGQLIDSGITSADILEGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNNCQEAFEGSDKLREEMRRMTAPEQESERKDKERLIKLRTLGNIRLIGELLKQNMVPEKIVHHIVQVIDCFLLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67562" e_stop="67590"/>
            <exon e_start="67899" e_stop="68000"/>
            <exon e_start="68297" e_stop="68488"/>
            <exon e_start="68950" e_stop="69047"/>
            <exon e_start="69317" e_stop="69404"/>
            <exon e_start="69495" e_stop="69845"/>
            <exon e_start="69954" e_stop="70083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.966"/>
          <exon-intron don_prob="0.993" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="0.994"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="67562" e_stop="67590" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67591" i_stop="67898" i_length="308"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67899" e_stop="68000" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68001" i_stop="68296" i_length="296"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68297" e_stop="68488" e_length="192"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68489" i_stop="68949" i_length="461"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68950" e_stop="69047" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="69048" i_stop="69316" i_length="269"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69317" e_stop="69404" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.941">
            <gDNA_intron_boundary i_start="69405" i_stop="69494" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="69495" e_stop="69845" e_length="351"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69846" i_stop="69953" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="69954" e_stop="70083" e_length="130"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67562" stop="67590"/>
              <exon start="67899" stop="68000"/>
              <exon start="68297" stop="68488"/>
              <exon start="68950" stop="69047"/>
              <exon start="69317" stop="69404"/>
              <exon start="69495" stop="69845"/>
              <exon start="69954" stop="70083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584443" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGAGATCAGCTCCTGCAACTGAGGGAG : GCGGTTGTCTTACAGTTACCTGAGGTTATTCTGCAAATCAAACACGAAGTTGAAGCTGAACTGTTTGGGGAAGATTCCTCTCGGGGTCGTGTGGATAGCAAT : GTGCAGGTGCAGTCTCAGGGTCGTTATTCTGAACCAGACAATCGTGACTGGCGTAATAGGCCAGCACAATTTTCTGCCCCCATAGAGGAGAGGTCATGGGAAGCACTTCGAGAAAACAGGGAATTTGGTGGCCAGTATACTCGGCAAGAGCAATCACAGTTTGCAAGAGCTCAAGTTTCTGCCAATCAAGGG : GGAGGTCCTGCTCCTACACTGATCAAAGCTGAGGTGCCATGGTCAGTTCGAAGGGGCACTCTTTCTGACAAAGATCGTGTCTTGAAAACAGTCAAGGG : AATACTTAACAAGTTGACCCCAGAGAAATTTGATCTTCTCAAAGGCCAATTAATAGATTCAGGGATAACAAGTGCAGACATTCTGGAG : GGTGTGATCTCCTTGATATTTGACAAGGCTGTATTGGAACCCACCTTTTGCCCGATGTATGCCCAGTTGTGTTCTGATCTCAACGAGAAGCTTCCTCCATTTCCATCTGATGAACCTGGTGGGAAAGAAATCACGTTTAAGCGAGTTCTTCTGAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAAACTGAGGGAAGAGATGAGACGAATGACTGCTCCGGAGCAGGAGTCGGAACGCAAGGACAAAGAAAGGTTGATCAAATTGCGCACTCTTGGAAACATACGTCTTATTGGGGAGCTATTGAAGCAAAATATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAG : GAACTATTAGGACAAGATCCCAAAAGCTGTCCAGAAGAAGAGAATGTTGAAGCTATATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGACAAGAAGCAAAAGTCGAGGCACATCAATGATATATATT</gDNA_template>
            <first_frame> L  E  I  S  S  C  N  *  G  R :   R  L  S  Y  S  Y  L  R  L  F  C  K  S  N  T  K  L  K  L  N  C  L  G  K  I  P  L  G  V  V  W  I  A  M :   C  R  C  S  L  R  V  V  I  L  N  Q  T  I  V  T  G  V  I  G  Q  H  N  F  L  P  P  *  R  R  G  H  G  K  H  F  E  K  T  G  N  L  V  A  S  I  L  G  K  S  N  H  S  L  Q  E  L  K  F  L  P  I  K  G :   E  V  L  L  L  H  *  S  K  L  R  C  H  G  Q  F  E  G  A  L  F  L  T  K  I  V  S  *  K  Q  S  R   : E  Y  L  T  S  *  P  Q  R  N  L  I  F  S  K  A  N  *  *  I  Q  G  *  Q  V  Q  T  F  W  R :   V  *  S  P  *  Y  L  T  R  L  Y  W  N  P  P  F  A  R  C  M  P  S  C  V  L  I  S  T  R  S  F  L  H  F  H  L  M  N  L  V  G  K  K  S  R  L  S  E  F  F  *  I  I  A  K  R  H  L  K  V  L  T  N  *  G  K  R  *  D  E  *  L  L  R  S  R  S  R  N  A  R  T  K  K  G  *  S  N  C  A  L  L  E  T  Y  V  L  L  G  S  Y  *  S  K  I  W  F  L  K  R  L  F  I  T  L  F  R :   N  Y  *  D  K  I  P  K  A  V  Q  K  K  R  M  L  K  L  Y  V  S  S  L  T  P  L  V  S  S  L  T  R  S  K  S  R  G  T  S  M  I  Y  I </first_frame>
            <second_frame>  S  R  S  A  P  A  T  E  G   : G  G  C  L  T  V  T  *  G  Y  S  A  N  Q  T  R  S  *  S  *  T  V  W  G  R  F  L  S  G  S  C  G  *  Q   : C  A  G  A  V  S  G  S  L  F  *  T  R  Q  S  *  L  A  *  *  A  S  T  I  F  C  P  H  R  G  E  V  M  G  S  T  S  R  K  Q  G  I  W  W  P  V  Y  S  A  R  A  I  T  V  C  K  S  S  S  F  C  Q  S  R   : G  R  S  C  S  Y  T  D  Q  S  *  G  A  M  V  S  S  K  G  H  S  F  *  Q  R  S  C  L  E  N  S  Q  G  :  N  T  *  Q  V  D  P  R  E  I  *  S  S  Q  R  P  I  N  R  F  R  D  N  K  C  R  H  S  G   : G  C  D  L  L  D  I  *  Q  G  C  I  G  T  H  L  L  P  D  V  C  P  V  V  F  *  S  Q  R  E  A  S  S  I  S  I  *  *  T  W  W  E  R  N  H  V  *  A  S  S  S  E  *  L  P  R  G  I  *  R  F  *  Q  T  E  G  R  D  E  T  N  D  C  S  G  A  G  V  G  T  Q  G  Q  R  K  V  D  Q  I  A  H  S  W  K  H  T  S  Y  W  G  A  I  E  A  K  Y  G  S  *  K  D  C  S  S  H  C  S   : G  T  I  R  T  R  S  Q  K  L  S  R  R  R  E  C  *  S  Y  M  S  V  L  *  H  H  W  *  A  A  *  Q  E  A  K  V  E  A  H  Q  *  Y  I   </second_frame>
            <third_frame>   R  D  Q  L  L  Q  L  R  E  :  A  V  V  L  Q  L  P  E  V  I  L  Q  I  K  H  E  V  E  A  E  L  F  G  E  D  S  S  R  G  R  V  D  S  N  :  V  Q  V  Q  S  Q  G  R  Y  S  E  P  D  N  R  D  W  R  N  R  P  A  Q  F  S  A  P  I  E  E  R  S  W  E  A  L  R  E  N  R  E  F  G  G  Q  Y  T  R  Q  E  Q  S  Q  F  A  R  A  Q  V  S  A  N  Q  G  :  G  G  P  A  P  T  L  I  K  A  E  V  P  W  S  V  R  R  G  T  L  S  D  K  D  R  V  L  K  T  V  K  G :   I  L  N  K  L  T  P  E  K  F  D  L  L  K  G  Q  L  I  D  S  G  I  T  S  A  D  I  L  E  :  G  V  I  S  L  I  F  D  K  A  V  L  E  P  T  F  C  P  M  Y  A  Q  L  C  S  D  L  N  E  K  L  P  P  F  P  S  D  E  P  G  G  K  E  I  T  F  K  R  V  L  L  N  N  C  Q  E  A  F  E  G  S  D  K  L  R  E  E  M  R  R  M  T  A  P  E  Q  E  S  E  R  K  D  K  E  R  L  I  K  L  R  T  L  G  N  I  R  L  I  G  E  L  L  K  Q  N  M  V  P  E  K  I  V  H  H  I  V  Q  :  E  L  L  G  Q  D  P  K  S  C  P  E  E  E  N  V  E  A  I  C  Q  F  F  N  T  I  G  K  Q  L  D  K  K  Q  K  S  R  H  I  N  D  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67564" stop="67590"/>
                    <exon start="67899" stop="68000"/>
                    <exon start="68297" stop="68488"/>
                    <exon start="68950" stop="69047"/>
                    <exon start="69317" stop="69404"/>
                    <exon start="69495" stop="69845"/>
                    <exon start="69954" stop="70082"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDQLLQLREAVVLQLPEVILQIKHEVEAELFGEDSSRGRVDSNVQVQSQGRYSEPDNRDWRNRPAQFSAPIEERSWEALRENREFGGQYTRQEQSQFARAQVSANQGGGPAPTLIKAEVPWSVRRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILEGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNNCQEAFEGSDKLREEMRRMTAPEQESERKDKERLIKLRTLGNIRLIGELLKQNMVPEKIVHHIVQELLGQDPKSCPEEENVEAICQFFNTIGKQLDKKQKSRHINDIY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="73026" PGL_stop="73291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73026" e_stop="73291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73026" e_stop="73291" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73026" stop="73291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAGAAAATATAGTGTATAATGTAGAGGATGAATCATACGGACCACATCTCGTTGCTAGCAATGAACATATAGTATGCATGTATTACATGTATAAGAAGTTTCTTTACACTAAAAGGATAATAATGTGCTAGCCTACATGTCAACACAAGTTCGACAATGCTCAGCATTAACACACAAGTTTCTTACCACATTTAACTAGACGGTGGAAGACGGATCAAACCCTCAAAGCAACAGGGTCTTGCCAAGATAATTTTTGTTTTCCC</gDNA_template>
            <first_frame> H  Q  K  I  *  C  I  M  *  R  M  N  H  T  D  H  I  S  L  L  A  M  N  I  *  Y  A  C  I  T  C  I  R  S  F  F  T  L  K  G  *  *  C  A  S  L  H  V  N  T  S  S  T  M  L  S  I  N  T  Q  V  S  Y  H  I  *  L  D  G  G  R  R  I  K  P  S  K  Q  Q  G  L  A  K  I  I  F  V  F   </first_frame>
            <second_frame>  T  R  K  Y  S  V  *  C  R  G  *  I  I  R  T  T  S  R  C  *  Q  *  T  Y  S  M  H  V  L  H  V  *  E  V  S  L  H  *  K  D  N  N  V  L  A  Y  M  S  T  Q  V  R  Q  C  S  A  L  T  H  K  F  L  T  T  F  N  *  T  V  E  D  G  S  N  P  Q  S  N  R  V  L  P  R  *  F  L  F  S  </second_frame>
            <third_frame>   P  E  N  I  V  Y  N  V  E  D  E  S  Y  G  P  H  L  V  A  S  N  E  H  I  V  C  M  Y  Y  M  Y  K  K  F  L  Y  T  K  R  I  I  M  C  *  P  T  C  Q  H  K  F  D  N  A  Q  H  *  H  T  S  F  L  P  H  L  T  R  R  W  K  T  D  Q  T  L  K  A  T  G  S  C  Q  D  N  F  C  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12SLm0012N14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="75719" PGL_stop="73826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75719" e_stop="75354"/>
            <exon e_start="74340" e_stop="74270"/>
            <exon e_start="74040" e_stop="73826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.986"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="75719" e_stop="75354" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="75353" i_stop="74341" i_length="1013"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74340" e_stop="74270" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74269" i_stop="74041" i_length="229"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="74040" e_stop="73826" e_length="215"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75719" stop="75354"/>
              <exon start="74340" stop="74270"/>
              <exon start="74040" stop="73826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585504" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGGGCTTTTTGGGGTTTGTCTTGGTCAAGAGAACCTTCTTGCCACCTCTCTTTCTTTCTCTATAACTCCTTTTTTTTGTTTGGCCCTGTTGTTGTGTTGTTATTATTGTTTCTCCCCTCTTTACTTCTCTCTTATCTGCCTCCTTTTGCTCCTTTTCTTGGTTTCTTTCAACTTTTTTGTCTCTTTATTTCTCCAAGATCTGATCTTTTTATGTGAAAGGATTAGTTTGATTCATCTGTGATCTGATATGTCTAAGAAGATGAAAAGGGGTGCTTTGGAATCATCATCTTATGGTGTTTTTGAAGACACAAAGGATAGGTTGAAACATCAAACACTTCTGCAGGACTATCAAGAGCTCCAGAAG : GAAACTGATGCCGCAAGGCACAAGCTGGAGGATTCAAAGCTGAGGAAACTAAGATTACAAGCTGAAGTTCG : TTTCTTACGCCAGAGGCACAAGCATCTATTGCAATCGAAGTCCTTAACAACTCCAAAAGGGAAAGAGCTAGTATCCCTACCAAATGTTGAAACTTACCCCAGGAGTAGGTCAAGGGATCAAGTTACGAGAAAAAAGGAAGCCAAGCTAAACAAACTGCCCCCTCTTCCTGGCCCTAAACCAAACGGAAGGATACAGGTTGCAAAGGTAGTTGCTT</gDNA_template>
            <first_frame> C  G  L  F  G  V  C  L  G  Q  E  N  L  L  A  T  S  L  S  F  S  I  T  P  F  F  C  L  A  L  L  L  C  C  Y  Y  C  F  S  P  L  Y  F  S  L  I  C  L  L  L  L  L  F  L  V  S  F  N  F  F  V  S  L  F  L  Q  D  L  I  F  L  C  E  R  I  S  L  I  H  L  *  S  D  M  S  K  K  M  K  R  G  A  L  E  S  S  S  Y  G  V  F  E  D  T  K  D  R  L  K  H  Q  T  L  L  Q  D  Y  Q  E  L  Q  K  :  E  T  D  A  A  R  H  K  L  E  D  S  K  L  R  K  L  R  L  Q  A  E  V  R :   F  L  R  Q  R  H  K  H  L  L  Q  S  K  S  L  T  T  P  K  G  K  E  L  V  S  L  P  N  V  E  T  Y  P  R  S  R  S  R  D  Q  V  T  R  K  K  E  A  K  L  N  K  L  P  P  L  P  G  P  K  P  N  G  R  I  Q  V  A  K  V  V  A  </first_frame>
            <second_frame>  V  G  F  L  G  F  V  L  V  K  R  T  F  L  P  P  L  F  L  S  L  *  L  L  F  F  V  W  P  C  C  C  V  V  I  I  V  S  P  L  F  T  S  L  L  S  A  S  F  C  S  F  S  W  F  L  S  T  F  L  S  L  Y  F  S  K  I  *  S  F  Y  V  K  G  L  V  *  F  I  C  D  L  I  C  L  R  R  *  K  G  V  L  W  N  H  H  L  M  V  F  L  K  T  Q  R  I  G  *  N  I  K  H  F  C  R  T  I  K  S  S  R  R :   K  L  M  P  Q  G  T  S  W  R  I  Q  S  *  G  N  *  D  Y  K  L  K  F   : V  S  Y  A  R  G  T  S  I  Y  C  N  R  S  P  *  Q  L  Q  K  G  K  S  *  Y  P  Y  Q  M  L  K  L  T  P  G  V  G  Q  G  I  K  L  R  E  K  R  K  P  S  *  T  N  C  P  L  F  L  A  L  N  Q  T  E  G  Y  R  L  Q  R  *  L  L </second_frame>
            <third_frame>   W  A  F  W  G  L  S  W  S  R  E  P  S  C  H  L  S  F  F  L  Y  N  S  F  F  L  F  G  P  V  V  V  L  L  L  L  F  L  P  S  L  L  L  S  Y  L  P  P  F  A  P  F  L  G  F  F  Q  L  F  C  L  F  I  S  P  R  S  D  L  F  M  *  K  D  *  F  D  S  S  V  I  *  Y  V  *  E  D  E  K  G  C  F  G  I  I  I  L  W  C  F  *  R  H  K  G  *  V  E  T  S  N  T  S  A  G  L  S  R  A  P  E   : G  N  *  C  R  K  A  Q  A  G  G  F  K  A  E  E  T  K  I  T  S  *  S  S  :  F  L  T  P  E  A  Q  A  S  I  A  I  E  V  L  N  N  S  K  R  E  R  A  S  I  P  T  K  C  *  N  L  P  Q  E  *  V  K  G  S  S  Y  E  K  K  G  S  Q  A  K  Q  T  A  P  S  S  W  P  *  T  K  R  K  D  T  G  C  K  G  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75476" stop="75354"/>
                    <exon start="74340" stop="74270"/>
                    <exon start="74040" stop="73827"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDMSKKMKRGALESSSYGVFEDTKDRLKHQTLLQDYQELQKETDAARHKLEDSKLRKLRLQAEVRFLRQRHKHLLQSKSLTTPKGKELVSLPNVETYPRSRSRDQVTRKKEAKLNKLPPLPGPKPNGRIQVAKVVA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75719" stop="75477"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGLFGVCLGQENLLATSLSFSITPFFCLALLLCCYYCFSPLYFSLICLLLLLFLVSFNFFVSLFLQDLIFLCERISLIHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="76747" PGL_stop="83198"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76747" e_stop="76816"/>
            <exon e_start="79476" e_stop="79630"/>
            <exon e_start="80507" e_stop="80607"/>
            <exon e_start="80714" e_stop="80753"/>
            <exon e_start="81587" e_stop="81658"/>
            <exon e_start="82357" e_stop="82413"/>
            <exon e_start="83039" e_stop="83198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76747" e_stop="76816" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="76817" i_stop="79475" i_length="2659"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79476" e_stop="79630" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="79631" i_stop="80506" i_length="876"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80507" e_stop="80607" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.906" acc_prob="0.981">
            <gDNA_intron_boundary i_start="80608" i_stop="80713" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80714" e_stop="80753" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80754" i_stop="81586" i_length="833"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81587" e_stop="81658" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.945">
            <gDNA_intron_boundary i_start="81659" i_stop="82356" i_length="698"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82357" e_stop="82413" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82414" i_stop="83038" i_length="625"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="83039" e_stop="83198" e_length="160"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76747" stop="76816"/>
              <exon start="79476" stop="79630"/>
              <exon start="80507" stop="80607"/>
              <exon start="80714" stop="80753"/>
              <exon start="81587" stop="81658"/>
              <exon start="82357" stop="82413"/>
              <exon start="83039" stop="83198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTTGTGGTGAAAAAATGGCGTCTACAAGTGCTTTCACAGCTGGGATTTCAAATCTTCATAGCTTCA : AAAAACCGTGTCCTAATGCAAATCAAGTTGGTATGTGGACTTTATCAAGACCTGGTTGTCGAAAGGTTTTAGATAATCCCAGACCTCTGCAAATATGTTCTCTGTTTGGAGGAAAAAAGGACAATAATGAGCAGAACAACGATGCTCCTTCAAAG : GCAGGTCTTTTTGGCAACATGCAAAACTTATACGAGACAGTGAAGAAGGCGCAAAATGTGGTTCAAGTTGAGGCAGTGCGAGTACAAAAAGAGCTTGCTTT : AGCAGAGTTTGATGGATACTGTGAAGGTGAACTAATCAAG : GTAACACTGTCTGGAAATCAGCAGCCGATACGCACTGAAATTACTGAGGCTGCCATGGCATTAGGCCCAGAA : AAACTCTCACTTCTGATTACAGAGGCATACAAGGATGCGCATCAGAAAAGTGTACTG : GCAATGAAGGAAAGAATGAGTGATCTTGCTCAGAGTTTGGGAATGCCAGCAGGCCTTGGTGAAGGATTCAAACAGTAAAAAAAAATTATCTTCATGAGTTTCAATTTTGTAAGCTAGCAGACACTAAGTTTATTTTTGCATTAAAATTATGAATACAATT</gDNA_template>
            <first_frame> *  F  C  G  E  K  M  A  S  T  S  A  F  T  A  G  I  S  N  L  H  S  F   : K  K  P  C  P  N  A  N  Q  V  G  M  W  T  L  S  R  P  G  C  R  K  V  L  D  N  P  R  P  L  Q  I  C  S  L  F  G  G  K  K  D  N  N  E  Q  N  N  D  A  P  S  K  :  A  G  L  F  G  N  M  Q  N  L  Y  E  T  V  K  K  A  Q  N  V  V  Q  V  E  A  V  R  V  Q  K  E  L  A  L :   A  E  F  D  G  Y  C  E  G  E  L  I  K  :  V  T  L  S  G  N  Q  Q  P  I  R  T  E  I  T  E  A  A  M  A  L  G  P  E  :  K  L  S  L  L  I  T  E  A  Y  K  D  A  H  Q  K  S  V  L  :  A  M  K  E  R  M  S  D  L  A  Q  S  L  G  M  P  A  G  L  G  E  G  F  K  Q  *  K  K  I  I  F  M  S  F  N  F  V  S  *  Q  T  L  S  L  F  L  H  *  N  Y  E  Y  N  </first_frame>
            <second_frame>  N  F  V  V  K  K  W  R  L  Q  V  L  S  Q  L  G  F  Q  I  F  I  A  S  :  K  N  R  V  L  M  Q  I  K  L  V  C  G  L  Y  Q  D  L  V  V  E  R  F  *  I  I  P  D  L  C  K  Y  V  L  C  L  E  E  K  R  T  I  M  S  R  T  T  M  L  L  Q  R :   Q  V  F  L  A  T  C  K  T  Y  T  R  Q  *  R  R  R  K  M  W  F  K  L  R  Q  C  E  Y  K  K  S  L  L   : *  Q  S  L  M  D  T  V  K  V  N  *  S  R :   *  H  C  L  E  I  S  S  R  Y  A  L  K  L  L  R  L  P  W  H  *  A  Q  K :   N  S  H  F  *  L  Q  R  H  T  R  M  R  I  R  K  V  Y  W :   Q  *  R  K  E  *  V  I  L  L  R  V  W  E  C  Q  Q  A  L  V  K  D  S  N  S  K  K  K  L  S  S  *  V  S  I  L  *  A  S  R  H  *  V  Y  F  C  I  K  I  M  N  T  I </second_frame>
            <third_frame>   I  L  W  *  K  N  G  V  Y  K  C  F  H  S  W  D  F  K  S  S  *  L  Q :   K  T  V  S  *  C  K  S  S  W  Y  V  D  F  I  K  T  W  L  S  K  G  F  R  *  S  Q  T  S  A  N  M  F  S  V  W  R  K  K  G  Q  *  *  A  E  Q  R  C  S  F  K   : G  R  S  F  W  Q  H  A  K  L  I  R  D  S  E  E  G  A  K  C  G  S  S  *  G  S  A  S  T  K  R  A  C  F  :  S  R  V  *  W  I  L  *  R  *  T  N  Q   : G  N  T  V  W  K  S  A  A  D  T  H  *  N  Y  *  G  C  H  G  I  R  P  R   : K  T  L  T  S  D  Y  R  G  I  Q  G  C  A  S  E  K  C  T   : G  N  E  G  K  N  E  *  S  C  S  E  F  G  N  A  S  R  P  W  *  R  I  Q  T  V  K  K  N  Y  L  H  E  F  Q  F  C  K  L  A  D  T  K  F  I  F  A  L  K  L  *  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76750" stop="76816"/>
                    <exon start="79476" stop="79630"/>
                    <exon start="80507" stop="80607"/>
                    <exon start="80714" stop="80753"/>
                    <exon start="81587" stop="81658"/>
                    <exon start="82357" stop="82413"/>
                    <exon start="83039" stop="83116"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCGEKMASTSAFTAGISNLHSFKKPCPNANQVGMWTLSRPGCRKVLDNPRPLQICSLFGGKKDNNEQNNDAPSKAGLFGNMQNLYETVKKAQNVVQVEAVRVQKELALAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMALGPEKLSLLITEAYKDAHQKSVLAMKERMSDLAQSLGMPAGLGEGFKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="85920" PGL_stop="89525"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85920" e_stop="86731"/>
            <exon e_start="87054" e_stop="87138"/>
            <exon e_start="87270" e_stop="87365"/>
            <exon e_start="87800" e_stop="87952"/>
            <exon e_start="88035" e_stop="88142"/>
            <exon e_start="88243" e_stop="88362"/>
            <exon e_start="88562" e_stop="88687"/>
            <exon e_start="88768" e_stop="88851"/>
            <exon e_start="89222" e_stop="89525"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="85920" e_stop="86731" e_length="812"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="86732" i_stop="87053" i_length="322"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87054" e_stop="87138" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87139" i_stop="87269" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87270" e_stop="87365" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.936">
            <gDNA_intron_boundary i_start="87366" i_stop="87799" i_length="434"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87800" e_stop="87952" e_length="153"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="87953" i_stop="88034" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88035" e_stop="88142" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.988">
            <gDNA_intron_boundary i_start="88143" i_stop="88242" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="88243" e_stop="88362" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="88363" i_stop="88561" i_length="199"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="88562" e_stop="88687" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="88688" i_stop="88767" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="88768" e_stop="88851" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="0.991">
            <gDNA_intron_boundary i_start="88852" i_stop="89221" i_length="370"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="89222" e_stop="89525" e_length="304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85920" stop="86731"/>
              <exon start="87054" stop="87138"/>
              <exon start="87270" stop="87365"/>
              <exon start="87800" stop="87952"/>
              <exon start="88035" stop="88142"/>
              <exon start="88243" stop="88362"/>
              <exon start="88562" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88591" stop="88687"/>
              <exon start="88768" stop="88851"/>
              <exon start="89222" stop="89506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576600" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGTACCAGGAGCTGCATACACTCTTAAATGGACGTTTCACAATGATCTGGGGCTTGTGTTTGTTGCTGTGTATCAGAAAATTCTTCATCTATTGTATGTGGATGAATTGCTTTCTATGGTTAAGCAGGAATTCTCAGAGATTTATGACCCAAAAAGAACTGTCTACAATGAATTTGACAATGTATTTCAGCAGCTTAGGAAGGAGGCCGAGGCACGTGCTGAGGAAATGAAGAAATCGAAGCAGGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGGTGCTGAATCAGGAAATGATAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGTTAGTAAGGGAAATGGAGTAGTGCAGGCTAACGGTAAAGAGAACAGAAGTTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAAAGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACCTAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTAGAAGCAGTTCAAGGTGAGAGTATGATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAGACTGAGGAGGATGAAGAGCCAGGGAAAGACAGCAAGGTCGAGGCAAAGAAGAAAGGTTGGTTCTCATCCATGTTCCAGAG : TATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGACAGGCTGATGACCAAGAATGTG : GCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCAGCAAGTTTGGAGGGTAAAAAGCTTGGCTCATTTACAAGAATTTCTTCAACAGTTCAG : GCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAGGGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCTACCAATCTTGCGAAG : GTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGTGACACATTTCGATCTGGAGCTGTAGAGCAGCTCCGTACTCATGCTCGAAGACTTCAG : GTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAATAGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAG : GATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATATGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTTGGAAATGACGCTGTTGATCAGTTATCAAAGTTCAACCAG : AAACTAGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAG : GTGGGAGCAGCGTTGTCCATGGTTTACATATCTGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCTTACACAGACTTGAAGAAGCTGAATGTCAAGTCCATAGTGAAGACCCTCCTCAAATGAGAACACACAATCTGCCTCTACATTTCAGTTTGGCTTGTAATGTCTGTTTAAGAAGTGTTGAACACTTTGTCTGTTGCTGCTTCAGTTCTGTTTGTAACTCTGTATTCACTCATCTGTGATTTTATACTATTTTGATTTTGAAGGTGAATCATTTGACTTAATTGGTGTATATTAGTTT</gDNA_template>
            <first_frame> D  V  P  G  A  A  Y  T  L  K  W  T  F  H  N  D  L  G  L  V  F  V  A  V  Y  Q  K  I  L  H  L  L  Y  V  D  E  L  L  S  M  V  K  Q  E  F  S  E  I  Y  D  P  K  R  T  V  Y  N  E  F  D  N  V  F  Q  Q  L  R  K  E  A  E  A  R  A  E  E  M  K  K  S  K  Q  V  S  K  P  V  N  H  N  L  G  K  K  Q  G  Q  V  Q  K  G  I  M  D  G  G  N  Q  K  K  S  G  A  E  S  G  N  D  S  G  D  G  D  K  V  N  S  R  A  M  E  N  G  N  G  R  S  K  V  S  K  G  N  G  V  V  Q  A  N  G  K  E  N  R  S  S  D  S  G  A  F  D  V  N  K  L  Q  K  L  R  A  K  G  G  K  K  T  D  T  I  V  K  D  S  K  A  E  P  T  K  K  A  K  K  N  R  V  W  D  D  S  P  K  E  S  K  L  D  F  T  D  P  M  C  E  N  A  N  G  N  T  A  V  V  E  A  V  Q  G  E  S  M  M  D  K  E  E  I  V  S  S  D  S  E  T  E  E  D  E  E  P  G  K  D  S  K  V  E  A  K  K  K  G  W  F  S  S  M  F  Q  S :   I  A  G  K  A  N  L  D  K  A  D  L  E  P  A  L  K  A  L  K  D  R  L  M  T  K  N  V  :  A  E  E  I  A  E  K  L  C  E  S  V  A  A  S  L  E  G  K  K  L  G  S  F  T  R  I  S  S  T  V  Q  :  A  A  M  E  E  A  L  V  R  I  L  T  P  K  R  S  I  D  I  L  R  D  V  H  A  A  K  E  Q  G  K  P  Y  V  V  V  F  V  G  V  N  G  V  G  K  S  T  N  L  A  K  :  V  A  Y  W  L  Q  Q  H  K  V  N  V  M  M  A  A  C  D  T  F  R  S  G  A  V  E  Q  L  R  T  H  A  R  R  L  Q  :  V  P  I  F  E  K  G  Y  E  K  D  P  A  I  V  A  K  E  A  I  Q  E  A  N  R  N  G  S  D  V  V  L  V  D  T  A  G  R  M  Q  :  D  N  E  P  L  M  R  A  L  S  K  L  I  Y  V  N  S  P  D  L  I  L  F  V  G  E  A  L  V  G  N  D  A  V  D  Q  L  S  K  F  N  Q  :  K  L  G  D  L  S  P  S  P  N  P  R  L  I  D  G  I  L  L  T  K  F  D  T  I  D  D  K  :  V  G  A  A  L  S  M  V  Y  I  S  G  A  P  V  M  F  V  G  C  G  Q  S  Y  T  D  L  K  K  L  N  V  K  S  I  V  K  T  L  L  K  *  E  H  T  I  C  L  Y  I  S  V  W  L  V  M  S  V  *  E  V  L  N  T  L  S  V  A  A  S  V  L  F  V  T  L  Y  S  L  I  C  D  F  I  L  F  *  F  *  R  *  I  I  *  L  N  W  C  I  L  V  </first_frame>
            <second_frame>  M  Y  Q  E  L  H  T  L  L  N  G  R  F  T  M  I  W  G  L  C  L  L  L  C  I  R  K  F  F  I  Y  C  M  W  M  N  C  F  L  W  L  S  R  N  S  Q  R  F  M  T  Q  K  E  L  S  T  M  N  L  T  M  Y  F  S  S  L  G  R  R  P  R  H  V  L  R  K  *  R  N  R  S  R  *  A  S  L  *  T  I  I  L  V  R  S  K  D  K  C  R  R  A  L  W  M  E  A  I  K  K  R  V  V  L  N  Q  E  M  I  V  E  M  V  I  K  *  I  V  V  P  W  K  M  A  M  G  V  L  K  L  V  R  E  M  E  *  C  R  L  T  V  K  R  T  E  V  L  I  L  G  L  L  M  *  I  S  Y  R  S  L  G  L  K  V  E  R  K  P  I  P  L  *  R  I  P  R  Q  S  L  Q  K  R  Q  R  R  T  E  S  G  M  I  H  L  R  S  R  N  W  I  S  R  I  L  C  V  R  M  Q  M  E  I  Q  Q  L  *  K  Q  F  K  V  R  V  *  W  T  K  R  R  L  *  V  V  I  V  R  L  R  R  M  K  S  Q  G  K  T  A  R  S  R  Q  R  R  K  V  G  S  H  P  C  S  R   : V  S  Q  E  R  Q  I  W  T  K  L  T  *  S  Q  L  *  K  L  L  R  T  G  *  *  P  R  M  W :   P  K  K  L  L  K  S  F  V  N  Q  W  Q  Q  V  W  R  V  K  S  L  A  H  L  Q  E  F  L  Q  Q  F  R :   Q  Q  W  R  R  P  L  F  G  S  *  L  L  N  V  P  L  I  S  *  G  M  F  M  P  Q  R  N  R  G  N  H  M  L  W  F  S  *  E  *  M  G  L  E  S  L  P  I  L  R  R :   L  L  I  G  F  S  S  T  R  S  M  L  *  W  L  R  V  T  H  F  D  L  E  L  *  S  S  S  V  L  M  L  E  D  F  R :   S  P  Y  L  R  R  A  M  R  R  I  L  L  L  L  P  R  K  Q  S  R  R  L  I  E  M  V  Q  M  S  F  L  L  I  Q  L  V  E  C  R :   I  M  N  H  *  C  E  H  F  R  S  L  Y  M  *  T  V  Q  I  *  S  F  L  L  V  R  H  L  L  E  M  T  L  L  I  S  Y  Q  S  S  T  R :   N  *  V  T  F  H  P  H  Q  I  Q  D  *  L  M  E  F  S  L  P  S  L  T  P  L  M  I  R :   W  E  Q  R  C  P  W  F  T  Y  L  E  P  R  S  C  L  W  D  V  V  S  L  T  Q  T  *  R  S  *  M  S  S  P  *  *  R  P  S  S  N  E  N  T  Q  S  A  S  T  F  Q  F  G  L  *  C  L  F  K  K  C  *  T  L  C  L  L  L  L  Q  F  C  L  *  L  C  I  H  S  S  V  I  L  Y  Y  F  D  F  E  G  E  S  F  D  L  I  G  V  Y  *  F </second_frame>
            <third_frame>   C  T  R  S  C  I  H  S  *  M  D  V  S  Q  *  S  G  A  C  V  C  C  C  V  S  E  N  S  S  S  I  V  C  G  *  I  A  F  Y  G  *  A  G  I  L  R  D  L  *  P  K  K  N  C  L  Q  *  I  *  Q  C  I  S  A  A  *  E  G  G  R  G  T  C  *  G  N  E  E  I  E  A  G  E  Q  A  C  K  P  *  S  W  *  E  A  R  T  S  A  E  G  H  Y  G  W  R  Q  S  K  K  E  W  C  *  I  R  K  *  *  W  R  W  *  *  S  K  *  S  C  H  G  K  W  Q  W  A  F  *  S  *  *  G  K  W  S  S  A  G  *  R  *  R  E  Q  K  F  *  F  W  G  F  *  C  K  *  A  T  E  A  *  G  *  R  W  K  E  N  R  Y  H  C  K  G  F  Q  G  R  A  Y  K  K  G  K  E  E  Q  S  L  G  *  F  T  *  G  V  E  I  G  F  H  G  S  Y  V  *  E  C  K  W  K  Y  S  S  C  R  S  S  S  R  *  E  Y  D  G  Q  R  G  D  C  E  *  *  *  *  D  *  G  G  *  R  A  R  E  R  Q  Q  G  R  G  K  E  E  R  L  V  L  I  H  V  P  E  :  Y  R  R  K  G  K  F  G  Q  S  *  L  R  A  S  F  K  S  S  *  G  Q  A  D  D  Q  E  C   : G  R  R  N  C  *  K  A  L  *  I  S  G  S  K  F  G  G  *  K  A  W  L  I  Y  K  N  F  F  N  S  S   : G  S  N  G  G  G  P  C  S  D  L  N  S  *  T  F  H  *  Y  L  E  G  C  S  C  R  K  G  T  G  E  T  I  C  C  G  F  R  R  S  K  W  G  W  K  V  Y  Q  S  C  E   : G  C  L  L  A  S  A  A  Q  G  Q  C  Y  D  G  C  V  *  H  I  S  I  W  S  C  R  A  A  P  Y  S  C  S  K  T  S   : G  P  H  I  *  E  G  L  *  E  G  S  C  Y  C  C  Q  G  S  N  P  G  G  *  *  K  W  F  R  C  R  S  C  *  Y  S  W  S  N  A   : G  *  *  T  T  D  A  S  T  F  E  A  Y  I  C  E  Q  S  R  S  D  P  F  C  W  *  G  T  C  W  K  *  R  C  *  S  V  I  K  V  Q  P   : E  T  R  *  P  F  T  L  T  K  S  K  I  D  *  W  N  S  P  Y  Q  V  *  H  H  *  *  *   : G  G  S  S  V  V  H  G  L  H  I  W  S  P  G  H  V  C  G  M  W  S  V  L  H  R  L  E  E  A  E  C  Q  V  H  S  E  D  P  P  Q  M  R  T  H  N  L  P  L  H  F  S  L  A  C  N  V  C  L  R  S  V  E  H  F  V  C  C  C  F  S  S  V  C  N  S  V  F  T  H  L  *  F  Y  T  I  L  I  L  K  V  N  H  L  T  *  L  V  Y  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85920" stop="86731"/>
                    <exon start="87054" stop="87138"/>
                    <exon start="87270" stop="87365"/>
                    <exon start="87800" stop="87952"/>
                    <exon start="88035" stop="88142"/>
                    <exon start="88243" stop="88362"/>
                    <exon start="88562" stop="88687"/>
                    <exon start="88768" stop="88851"/>
                    <exon start="89222" stop="89347"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1707</number_coding_nucleotides>
                  <number_encoded_amino_acids>569</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVPGAAYTLKWTFHNDLGLVFVAVYQKILHLLYVDELLSMVKQEFSEIYDPKRTVYNEFDNVFQQLRKEAEARAEEMKKSKQVSKPVNHNLGKKQGQVQKGIMDGGNQKKSGAESGNDSGDGDKVNSRAMENGNGRSKVSKGNGVVQANGKENRSSDSGAFDVNKLQKLRAKGGKKTDTIVKDSKAEPTKKAKKNRVWDDSPKESKLDFTDPMCENANGNTAVVEAVQGESMMDKEEIVSSDSETEEDEEPGKDSKVEAKKKGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLGSFTRISSTVQAAMEEALVRILTPKRSIDILRDVHAAKEQGKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVNVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEANRNGSDVVLVDTAGRMQDNEPLMRALSKLIYVNSPDLILFVGEALVGNDAVDQLSKFNQKLGDLSPSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="96812" PGL_stop="104284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96812" e_stop="96866"/>
            <exon e_start="97053" e_stop="97208"/>
            <exon e_start="97290" e_stop="97874"/>
            <exon e_start="98451" e_stop="98663"/>
            <exon e_start="99538" e_stop="99842"/>
            <exon e_start="101171" e_stop="101282"/>
            <exon e_start="102499" e_stop="102735"/>
            <exon e_start="103304" e_stop="104284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.885" e_score="1.000"/>
          <exon-intron don_prob="0.754" acc_prob="0.990" e_score="0.977"/>
          <exon-intron don_prob="0.990" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96812" e_stop="96866" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.823">
            <gDNA_intron_boundary i_start="96867" i_stop="97052" i_length="186"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="97053" e_stop="97208" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="97209" i_stop="97289" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97290" e_stop="97874" e_length="585"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97875" i_stop="98450" i_length="576"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98451" e_stop="98663" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.885">
            <gDNA_intron_boundary i_start="98664" i_stop="99537" i_length="874"/>
          </intron>
          <exon e_serial="5" e_score="0.977">
            <gDNA_exon_boundary e_start="99538" e_stop="99842" e_length="305"/>
          </exon>
          <intron i_serial="5" don_prob="0.754" acc_prob="0.990">
            <gDNA_intron_boundary i_start="99843" i_stop="101170" i_length="1328"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101171" e_stop="101282" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.965">
            <gDNA_intron_boundary i_start="101283" i_stop="102498" i_length="1216"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="102499" e_stop="102735" e_length="237"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102736" i_stop="103303" i_length="568"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="103304" e_stop="104284" e_length="981"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96812" stop="96866"/>
              <exon start="97053" stop="97208"/>
              <exon start="97290" stop="97874"/>
              <exon start="98451" stop="98663"/>
              <exon start="99538" stop="99842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98551" stop="98663"/>
              <exon start="99538" stop="99842"/>
              <exon start="101171" stop="101215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99690" stop="99842"/>
              <exon start="101171" stop="101282"/>
              <exon start="102499" stop="102735"/>
              <exon start="103304" stop="104284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571286" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTATGGTTCGAAGTCCCAAGATCTGGATGGGCAGCAAAAAAAAAGTTTGTAAG : ATAACATCTTACCCTCGCTGTCTTTGAAGATTGTTTTTGACACTCTTTTGGTTGGAAGATACATTTTTCTATTAACTGAAGATAACACCTAAAATGTTAATGTTTAGCATTTAAGCAATTTATGGCTGATGGACAGGGCGGCTTGACATGAACAAT : GTTGGATGACTTTGATTGCGGACTAACCTCAGCGTCAACACCGTAGCTGCAAATAAATGTGGCTTCATCATGGAAGCTTTAAGACATTCTGGCCATGCAACTAGCAGCCCGTCAAGGTCTTTTAAGAGAGGAATGAGAAAAGGATCTGAAGGACTAAAGTCGATTGGTCGATCACTTGGATTTGGTGTCTCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAAGAAGATTTTTGATCCTCAAGATAAATTCCTTCTCTTGTGGAATAAGCTGTTTGTTATATCATGCATTCTGGCCGTGTCTGTTGATCCGTTGTTTTTCTACCTTCCAGTTTTCGATGACAAGTCAAATTGCCTTCAGATTGATCGAAAGCTAGCTGTGATAGCCACAACTCTTCGTACCGTTGTCGATGCTTTCTATCTTATTCACATGGCACTTCAGTTTCGTACAGCTTATATTGCACCATCCTCTCGAGTTTTTGGAAGGGGTGAACTAGTGATAGATCCTGGACAGATTGCTAAAAGATACTTGCGATCCTATTTTATCATCGATCTTCTTGCTGTGGTTCCCTTGCCTCAG : ATTGTAGCTGGGAGATTCCTGCAGAGATCGACAGGTTCTGATGTTCTGGCTACCAAACAAGCTTTGCTCTATATCATTTTGCTCCAGTATATCCCCAGATTTGTCCGAGTTATACCCTTAACGTCAGAATTGAAAAGAACTACTGGTGTCTTCGCTGAAACTGCATGGGCTGGTGCTGCATCCTATTTGCTGTTGTACATGCTTGCTAGTCAC : ATAGTTGGCTCGTTCTGGTATTTGCTTTCTGTGGAACGCTATGATACATGCTGGGAAAGAGCTTGTAGTCATAACACAACATGCCAAACTGATTTCTTGTACTGCGGCAATCAAGGCATGACAGGGTATAATGCTTGGAGCAATATCAGTGAATCGGTTTTAAATGGAGCATGCCCTCGTAGCGGTGACAATCCACCATTTGATTTTGGAATTTTCGCGCAGGCTTTGTCATCAGGCATAGTTTTCTCAATGAAGTTTGTGACTAAATATTGCTACTGTTTGTGGTGGGGACTCCAGAATTTAAG : TACCCTTGGACAGGGACTTCAAACTAGCACATATCCTGGGGAGTCTTTATTCTCTATTGCACTAGCGATACTCGGGCTCATTCTCTTTGCATTGCTGATTGGTAACATGCAG : ACATACCTTCAGTCACTTACTATTCGACTTGAAGAGATGAGAGTTAGAAGGCGTGACTCGGAACAATGGATGCATCACAGATTGCTTCCACAAGAACTTCGAGAACGGGTAAGGGGCTATGATCAGTACAAGTGGCAAGAAACACGTGGAGTGGATGAAGAAAATATAGTTCAGAATTTGCCCAAGGATCTCAGGAGGGATATCAAACGTCATCTTTGTCTGGCTCTAGTGAAGAGG : GTGCCTCTATTTGCAAATATGGAGGAGAGATTGCTTGATGCAATTTGTGAGCATCTAAAACCTTGTTTGTACATCGAGAACACTTACCTTGTTCGAGAAGGAGATCCAGTGGATGAAATGCTCTTTGTGATACGAGGGCGCCTTGAGAGTGTGACAACTGATGGTGGGAGAAGCGGTTTCTTCAACCGCAGCTTGTTAAAAGAATCCGACTTCTGTGGAGAAGAACTTCTTACTTGGGCACTAGACCCGAAATCAGGTTCTAACCTCCCATCTTCTACTCGTACCGTGAAAGCTCTGACAGAGGTAGAGGCTTTTGCATTAATAGCAGATGAGTTGAAATTCGTCGCCAGTCAGTTCAGAAAGCTCCACAGTAGACAGGTACAGCACACGTTCCGTTTCTACTCACAGCACTGGAGAACTTGGGCTGCTTGCTTCATCCAAGCAGCATGGAGGCGTTTCACGAAAAGGAAACTTATGGAACTACAAAGAAAAGAGGATGAAGAAGCAGAAGCGTTGGCCGGGGCCAGTAGTAACTCGGGTGGAGCTTCTTTTAGTATTGGGGCAACGTTCTTGGCATCGAGATTTGCAGCTAATGCTCTCCGAGGCGTTCATAAGAATCGAAATCTCAAGTCTGCTAGGGAGCTTATGAAGCTGCAAAAACCTCCAGAACCTGATTTCAGTGAAGATACTGACTGAATTTTGTATGCTTAAGCTTTGCAAAAAGCTTGATGTATAATTTATGTTTATTAGTCTTATTGCTACATATTTATGTAAGAGTTTAACTTCTTTAAACTGATACTGATTGTGTAAATAAATATTTACATTTATCATCTCGCCTAAAAGGTAACTATGGGTAGCTGCCCGTGATAAGTAGAAGACACCTTTCGTTTCAATTTGTTTGTCTGTTTTAAATTGATACAACGTTTGTAAAAAAGACTTAAATTTTGTGGTATTAAACTAAAAATACGTTAAATGTATCAT</gDNA_template>
            <first_frame> D  Y  G  S  K  S  Q  D  L  D  G  Q  Q  K  K  S  L  *   : D  N  I  L  P  S  L  S  L  K  I  V  F  D  T  L  L  V  G  R  Y  I  F  L  L  T  E  D  N  T  *  N  V  N  V  *  H  L  S  N  L  W  L  M  D  R  A  A  *  H  E  Q   : C  W  M  T  L  I  A  D  *  P  Q  R  Q  H  R  S  C  K  *  M  W  L  H  H  G  S  F  K  T  F  W  P  C  N  *  Q  P  V  K  V  F  *  E  R  N  E  K  R  I  *  R  T  K  V  D  W  S  I  T  W  I  W  C  L  *  G  S  I  S  *  R  S  E  S  F  R  E  E  D  F  *  S  S  R  *  I  P  S  L  V  E  *  A  V  C  Y  I  M  H  S  G  R  V  C  *  S  V  V  F  L  P  S  S  F  R  *  Q  V  K  L  P  S  D  *  S  K  A  S  C  D  S  H  N  S  S  Y  R  C  R  C  F  L  S  Y  S  H  G  T  S  V  S  Y  S  L  Y  C  T  I  L  S  S  F  W  K  G  *  T  S  D  R  S  W  T  D  C  *  K  I  L  A  I  L  F  Y  H  R  S  S  C  C  G  S  L  A  S   : D  C  S  W  E  I  P  A  E  I  D  R  F  *  C  S  G  Y  Q  T  S  F  A  L  Y  H  F  A  P  V  Y  P  Q  I  C  P  S  Y  T  L  N  V  R  I  E  K  N  Y  W  C  L  R  *  N  C  M  G  W  C  C  I  L  F  A  V  V  H  A  C  *  S   : H  S  W  L  V  L  V  F  A  F  C  G  T  L  *  Y  M  L  G  K  S  L  *  S  *  H  N  M  P  N  *  F  L  V  L  R  Q  S  R  H  D  R  V  *  C  L  E  Q  Y  Q  *  I  G  F  K  W  S  M  P  S  *  R  *  Q  S  T  I  *  F  W  N  F  R  A  G  F  V  I  R  H  S  F  L  N  E  V  C  D  *  I  L  L  L  F  V  V  G  T  P  E  F  K  :  Y  P  W  T  G  T  S  N  *  H  I  S  W  G  V  F  I  L  Y  C  T  S  D  T  R  A  H  S  L  C  I  A  D  W  *  H  A   : D  I  P  S  V  T  Y  Y  S  T  *  R  D  E  S  *  K  A  *  L  G  T  M  D  A  S  Q  I  A  S  T  R  T  S  R  T  G  K  G  L  *  S  V  Q  V  A  R  N  T  W  S  G  *  R  K  Y  S  S  E  F  A  Q  G  S  Q  E  G  Y  Q  T  S  S  L  S  G  S  S  E  E   : G  A  S  I  C  K  Y  G  G  E  I  A  *  C  N  L  *  A  S  K  T  L  F  V  H  R  E  H  L  P  C  S  R  R  R  S  S  G  *  N  A  L  C  D  T  R  A  P  *  E  C  D  N  *  W  W  E  K  R  F  L  Q  P  Q  L  V  K  R  I  R  L  L  W  R  R  T  S  Y  L  G  T  R  P  E  I  R  F  *  P  P  I  F  Y  S  Y  R  E  S  S  D  R  G  R  G  F  C  I  N  S  R  *  V  E  I  R  R  Q  S  V  Q  K  A  P  Q  *  T  G  T  A  H  V  P  F  L  L  T  A  L  E  N  L  G  C  L  L  H  P  S  S  M  E  A  F  H  E  K  E  T  Y  G  T  T  K  K  R  G  *  R  S  R  S  V  G  R  G  Q  *  *  L  G  W  S  F  F  *  Y  W  G  N  V  L  G  I  E  I  C  S  *  C  S  P  R  R  S  *  E  S  K  S  Q  V  C  *  G  A  Y  E  A  A  K  T  S  R  T  *  F  Q  *  R  Y  *  L  N  F  V  C  L  S  F  A  K  S  L  M  Y  N  L  C  L  L  V  L  L  L  H  I  Y  V  R  V  *  L  L  *  T  D  T  D  C  V  N  K  Y  L  H  L  S  S  R  L  K  G  N  Y  G  *  L  P  V  I  S  R  R  H  L  S  F  Q  F  V  C  L  F  *  I  D  T  T  F  V  K  K  T  *  I  L  W  Y  *  T  K  N  T  L  N  V  S  </first_frame>
            <second_frame>  I  M  V  R  S  P  K  I  W  M  G  S  K  K  K  V  C  K  :  I  T  S  Y  P  R  C  L  *  R  L  F  L  T  L  F  W  L  E  D  T  F  F  Y  *  L  K  I  T  P  K  M  L  M  F  S  I  *  A  I  Y  G  *  W  T  G  R  L  D  M  N  N  :  V  G  *  L  *  L  R  T  N  L  S  V  N  T  V  A  A  N  K  C  G  F  I  M  E  A  L  R  H  S  G  H  A  T  S  S  P  S  R  S  F  K  R  G  M  R  K  G  S  E  G  L  K  S  I  G  R  S  L  G  F  G  V  S  K  A  V  F  P  E  D  L  K  V  S  E  K  K  I  F  D  P  Q  D  K  F  L  L  L  W  N  K  L  F  V  I  S  C  I  L  A  V  S  V  D  P  L  F  F  Y  L  P  V  F  D  D  K  S  N  C  L  Q  I  D  R  K  L  A  V  I  A  T  T  L  R  T  V  V  D  A  F  Y  L  I  H  M  A  L  Q  F  R  T  A  Y  I  A  P  S  S  R  V  F  G  R  G  E  L  V  I  D  P  G  Q  I  A  K  R  Y  L  R  S  Y  F  I  I  D  L  L  A  V  V  P  L  P  Q  :  I  V  A  G  R  F  L  Q  R  S  T  G  S  D  V  L  A  T  K  Q  A  L  L  Y  I  I  L  L  Q  Y  I  P  R  F  V  R  V  I  P  L  T  S  E  L  K  R  T  T  G  V  F  A  E  T  A  W  A  G  A  A  S  Y  L  L  L  Y  M  L  A  S  H  :  I  V  G  S  F  W  Y  L  L  S  V  E  R  Y  D  T  C  W  E  R  A  C  S  H  N  T  T  C  Q  T  D  F  L  Y  C  G  N  Q  G  M  T  G  Y  N  A  W  S  N  I  S  E  S  V  L  N  G  A  C  P  R  S  G  D  N  P  P  F  D  F  G  I  F  A  Q  A  L  S  S  G  I  V  F  S  M  K  F  V  T  K  Y  C  Y  C  L  W  W  G  L  Q  N  L  S :   T  L  G  Q  G  L  Q  T  S  T  Y  P  G  E  S  L  F  S  I  A  L  A  I  L  G  L  I  L  F  A  L  L  I  G  N  M  Q  :  T  Y  L  Q  S  L  T  I  R  L  E  E  M  R  V  R  R  R  D  S  E  Q  W  M  H  H  R  L  L  P  Q  E  L  R  E  R  V  R  G  Y  D  Q  Y  K  W  Q  E  T  R  G  V  D  E  E  N  I  V  Q  N  L  P  K  D  L  R  R  D  I  K  R  H  L  C  L  A  L  V  K  R  :  V  P  L  F  A  N  M  E  E  R  L  L  D  A  I  C  E  H  L  K  P  C  L  Y  I  E  N  T  Y  L  V  R  E  G  D  P  V  D  E  M  L  F  V  I  R  G  R  L  E  S  V  T  T  D  G  G  R  S  G  F  F  N  R  S  L  L  K  E  S  D  F  C  G  E  E  L  L  T  W  A  L  D  P  K  S  G  S  N  L  P  S  S  T  R  T  V  K  A  L  T  E  V  E  A  F  A  L  I  A  D  E  L  K  F  V  A  S  Q  F  R  K  L  H  S  R  Q  V  Q  H  T  F  R  F  Y  S  Q  H  W  R  T  W  A  A  C  F  I  Q  A  A  W  R  R  F  T  K  R  K  L  M  E  L  Q  R  K  E  D  E  E  A  E  A  L  A  G  A  S  S  N  S  G  G  A  S  F  S  I  G  A  T  F  L  A  S  R  F  A  A  N  A  L  R  G  V  H  K  N  R  N  L  K  S  A  R  E  L  M  K  L  Q  K  P  P  E  P  D  F  S  E  D  T  D  *  I  L  Y  A  *  A  L  Q  K  A  *  C  I  I  Y  V  Y  *  S  Y  C  Y  I  F  M  *  E  F  N  F  F  K  L  I  L  I  V  *  I  N  I  Y  I  Y  H  L  A  *  K  V  T  M  G  S  C  P  *  *  V  E  D  T  F  R  F  N  L  F  V  C  F  K  L  I  Q  R  L  *  K  R  L  K  F  C  G  I  K  L  K  I  R  *  M  Y  H </second_frame>
            <third_frame>   L  W  F  E  V  P  R  S  G  W  A  A  K  K  K  F  V  R :   *  H  L  T  L  A  V  F  E  D  C  F  *  H  S  F  G  W  K  I  H  F  S  I  N  *  R  *  H  L  K  C  *  C  L  A  F  K  Q  F  M  A  D  G  Q  G  G  L  T  *  T  M :   L  D  D  F  D  C  G  L  T  S  A  S  T  P  *  L  Q  I  N  V  A  S  S  W  K  L  *  D  I  L  A  M  Q  L  A  A  R  Q  G  L  L  R  E  E  *  E  K  D  L  K  D  *  S  R  L  V  D  H  L  D  L  V  S  L  R  Q  Y  F  L  K  I  *  K  F  Q  R  R  R  F  L  I  L  K  I  N  S  F  S  C  G  I  S  C  L  L  Y  H  A  F  W  P  C  L  L  I  R  C  F  S  T  F  Q  F  S  M  T  S  Q  I  A  F  R  L  I  E  S  *  L  *  *  P  Q  L  F  V  P  L  S  M  L  S  I  L  F  T  W  H  F  S  F  V  Q  L  I  L  H  H  P  L  E  F  L  E  G  V  N  *  *  *  I  L  D  R  L  L  K  D  T  C  D  P  I  L  S  S  I  F  L  L  W  F  P  C  L  R :   L  *  L  G  D  S  C  R  D  R  Q  V  L  M  F  W  L  P  N  K  L  C  S  I  S  F  C  S  S  I  S  P  D  L  S  E  L  Y  P  *  R  Q  N  *  K  E  L  L  V  S  S  L  K  L  H  G  L  V  L  H  P  I  C  C  C  T  C  L  L  V  T :   *  L  A  R  S  G  I  C  F  L  W  N  A  M  I  H  A  G  K  E  L  V  V  I  T  Q  H  A  K  L  I  S  C  T  A  A  I  K  A  *  Q  G  I  M  L  G  A  I  S  V  N  R  F  *  M  E  H  A  L  V  A  V  T  I  H  H  L  I  L  E  F  S  R  R  L  C  H  Q  A  *  F  S  Q  *  S  L  *  L  N  I  A  T  V  C  G  G  D  S  R  I  *   : V  P  L  D  R  D  F  K  L  A  H  I  L  G  S  L  Y  S  L  L  H  *  R  Y  S  G  S  F  S  L  H  C  *  L  V  T  C  R :   H  T  F  S  H  L  L  F  D  L  K  R  *  E  L  E  G  V  T  R  N  N  G  C  I  T  D  C  F  H  K  N  F  E  N  G  *  G  A  M  I  S  T  S  G  K  K  H  V  E  W  M  K  K  I  *  F  R  I  C  P  R  I  S  G  G  I  S  N  V  I  F  V  W  L  *  *  R  G :   C  L  Y  L  Q  I  W  R  R  D  C  L  M  Q  F  V  S  I  *  N  L  V  C  T  S  R  T  L  T  L  F  E  K  E  I  Q  W  M  K  C  S  L  *  Y  E  G  A  L  R  V  *  Q  L  M  V  G  E  A  V  S  S  T  A  A  C  *  K  N  P  T  S  V  E  K  N  F  L  L  G  H  *  T  R  N  Q  V  L  T  S  H  L  L  L  V  P  *  K  L  *  Q  R  *  R  L  L  H  *  *  Q  M  S  *  N  S  S  P  V  S  S  E  S  S  T  V  D  R  Y  S  T  R  S  V  S  T  H  S  T  G  E  L  G  L  L  A  S  S  K  Q  H  G  G  V  S  R  K  G  N  L  W  N  Y  K  E  K  R  M  K  K  Q  K  R  W  P  G  P  V  V  T  R  V  E  L  L  L  V  L  G  Q  R  S  W  H  R  D  L  Q  L  M  L  S  E  A  F  I  R  I  E  I  S  S  L  L  G  S  L  *  S  C  K  N  L  Q  N  L  I  S  V  K  I  L  T  E  F  C  M  L  K  L  C  K  K  L  D  V  *  F  M  F  I  S  L  I  A  T  Y  L  C  K  S  L  T  S  L  N  *  Y  *  L  C  K  *  I  F  T  F  I  I  S  P  K  R  *  L  W  V  A  A  R  D  K  *  K  T  P  F  V  S  I  C  L  S  V  L  N  *  Y  N  V  C  K  K  D  L  N  F  V  V  L  N  *  K  Y  V  K  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLm0012N14.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97305" stop="97874"/>
                    <exon start="98451" stop="98663"/>
                    <exon start="99538" stop="99842"/>
                    <exon start="101171" stop="101282"/>
                    <exon start="102499" stop="102735"/>
                    <exon start="103304" stop="103999"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2130</number_coding_nucleotides>
                  <number_encoded_amino_acids>710</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRTNLSVNTVAANKCGFIMEALRHSGHATSSPSRSFKRGMRKGSEGLKSIGRSLGFGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSVDPLFFYLPVFDDKSNCLQIDRKLAVIATTLRTVVDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPGQIAKRYLRSYFIIDLLAVVPLPQIVAGRFLQRSTGSDVLATKQALLYIILLQYIPRFVRVIPLTSELKRTTGVFAETAWAGAASYLLLYMLASHIVGSFWYLLSVERYDTCWERACSHNTTCQTDFLYCGNQGMTGYNAWSNISESVLNGACPRSGDNPPFDFGIFAQALSSGIVFSMKFVTKYCYCLWWGLQNLSTLGQGLQTSTYPGESLFSIALAILGLILFALLIGNMQTYLQSLTIRLEEMRVRRRDSEQWMHHRLLPQELRERVRGYDQYKWQETRGVDEENIVQNLPKDLRRDIKRHLCLALVKRVPLFANMEERLLDAICEHLKPCLYIENTYLVREGDPVDEMLFVIRGRLESVTTDGGRSGFFNRSLLKESDFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRKLHSRQVQHTFRFYSQHWRTWAACFIQAAWRRFTKRKLMELQRKEDEEAEALAGASSNSGGASFSIGATFLASRFAANALRGVHKNRNLKSARELMKLQKPPEPDFSEDTD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 34512 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 2157 bytes was the average size of a spliced alignment
$ 18872 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1715 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 30 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:20:31
-->
