<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:13:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12SLe0062N07-tH0F4/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12SLe0062N07-tH0F4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0062N07-tH0F4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9007-2" ref_strand="+" ref_description="SGN-M9007-2 C2_At5g49060-2 [cosii_markers]">
      <seq>gttcgagttttttttttttttttttgcgactctcaaaatctcctctttctctgctcgccgtccggtcagtcgtctctttcgatttcacttccggtagcaggtgaattgaaattgcaagcgcttgcatctctctgagtattgtgatctctagaagatcgcgtttttgtttcagagctgtgattttctgttttagagtttcttgtcaagttgagttgaagttgttgcattgaacgctagaatggaaggtaacaaggatgaggctttaaggtgcattggtattgccaaggaggcaattgcatctggcaataagcagaaagcactcaagtttatcagaattgcacggcgccttaacaatgatctatctgtggaaggtcttttggctgcttgtgaaaatctggagtcatcgactcctgagtcctcaagtgaggttagaaatgttgaaaatatgaaaaatgacaggagtcatgttaagtctgatgaggtatccgatggggagaggaactatactgacgaacatgtgcagttgattaggcaaattaagactaagaaggactattacgcgattcttggtctagagaagggttgttcagttgaggagattaggaagtcatacaggaaactgtcatttgaaagtcatcctgacaaaaataaggctccaggctctgaagaggcattttagaaagtatccanggcatttaagtggttgagtgatgatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0062N07-tH0F4/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12SLe0062N07.1" temp_strand="+" temp_description="C12SLe0062N07.1  AC235573.2 htgs_phase:2 submitted_to_sgn_as:gi|238909030|gb|AC235573.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-62N7, WORKING DRAFT SEQUENCE">
        <position start="111303" stop="114630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111610" g_stop="111694" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="100" r_length="81" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111695" i_stop="113711" i_length="2017">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113712" g_stop="114330" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="719" r_length="619" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="19" polyA_stop="7"/>
      <MATCH_line gen_id="C12SLe0062N07.1" gen_strand="+" ref_id="SGN-M9007-2" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0062N07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9007-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111610" e_stop="111694"/>
          <exon e_start="113712" e_stop="114330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGCGACTCTCAAAATCTCCTCTTTCTCTGCTCGCCGTCCGGTCGGTCGGTCGGCTCTTTCGATTTTACTTCCGGTAGCAGGTGAGTAGTTTCCGAGCAGCTATTACAGTTTTTTCCGATTATGTTTGTGTGGAATTTTCAGATGAGATTCGTTTCCGATTCAATTTCATGAAACTCAAGCTCTAATTTTCAATATTTTATGAAATTTGTTTTTTTTTGCTTGATTATGTGTTTATATAAATATGAATTTGAGCAATTGGTTGGATGTTCCCTAATTAAGAAATCTAATTGCGATCGAGGCTCCTTCGTGTGCGTATCGTGATCTAGTTATTGACACTTATAAGCCTTTTTTTAGTTACATATTTCATTGATTTTTGCTTCATTACATGTTTATATGTGAAGTTGAGCAATTGGTTGAGTATTTTCGTGATTAGGAATGTTGAATTGAGATCCTGCTCCATTGTGTATCTGATTCCTAGTAGAACAAATATTTTTCAGTAGAGCATTTGGTTGGATGCTTTCCTAATTAGGAAATTAAGTTGTAACGTGATCTCCAGTGTAATACAGTTATTGACAGTTCAAACTTTTTTTTTTTGAAAAAAAAATTTCATTGATTTTTGCTTCATTTCATGTTTATATGTGAAGTTTGAGCAATTGGTTGTATGTTCTCCTAATTAAGGAAAATGAAATGCGATTACTCTCCTGTGTGTATTGTGATCCCTAGTAGAACAAGTATTTTCCAGTAAATTTACTTCATTTATAATACAGTTATTGGCAGTTCAAGCACTAGTTTTCAATATTTCATCAATTTTTTGCTTCATTACATGTTTATATGTGAAGTTGAGCAATTGATTGGGTATTTTTGTACTTAGGAAAATTGAATATGCGATCACACTCCTATTTGTATCATGCTCCCTAGTAGAACAAGTATTTTTCAGTATATTAAATTAATTTGTCATACAACTACTGGCAGTTCAATCCCTATTTCTCAGTATCTCATCAGTTTTTGCTACATTACATGTTTGTGTGTGATTTGAAATTGGTTGGTATTTTGGTAATTAGGGGAAGTGAACTGGTCTCTACTTCTCTGTGTATTGTGATACTGATCCCTATTAAAATTTCTCTTTCTCAATGAATTTAGTTCGTGTGTAATACATAATAACGGTTCAGTGTGTTCCTGTAATAATTTTGAGTGTTTTTTTGGGTATTTTGGCACTGAGGTGAGTTGAGCTGCAGTCACGGCTTCTCTGTGTATCATAATCTGTAGTAGAATTTGTATCTTTTATCAGATGTTCATTTATTTCTCAACCAATGAAGCCTAATTTTCATTTCCTGTTTGTGTGTTAATATTAAGTAACTTGTTTGGTATTTTGGTGATTAGGTGAGTTGAATTTGCAGTAGTTCCTTCTCCCTATATTTCTTGATCCTAGTAAGATGTGTATTTTTGGTTGGATACATCTTTATTTGTTATACAATCTTAAATAAACGGTGTCCCAATTTCGTATCTCATCGATATTCTGACTCATTACACGTTTTTGTCTGTTAATTTTGCAATTTTCTTAGGTATTATGATATAGAAAAATTGAATTGCAATCGTTGGTTCCCTATGTATTGTGGTTCTAGTCGATGATTGAAGACTTAATAGTTGATATCTTGTCGAATTATTGCTTCATTAGAGTTTTGAGTGACTTTGAGTGTTGACTGGATATTTTTTGTGATAAGGCGAATTGAATTGCAGGCACTATTTTTCCGTGTGTATTGTGATCCTTGTAGTATGTGTATTTTTGAGTGGATTTAGTTTATTAGTAATACAATTATAAACAATTCAAGCCATAATATTCCACATCTCGTTTTTTGTTTCATCATTCGTCCTATTTTCAGATTTTGTGATATTGATCAACACTATTATGCTTCATTACATGTGCGTGTGCTAATTTTGAGCAATCTCCTATGTATTTTGGTAGTCAAATCAATTTTAAATCACAGCTTTTGTATGTTTTATCATAACTGATCTGATATTGACCAATATTCTAAAGTGCTCATGCATGTTTTTGTGTGATTATTTTGAGTAATTTGTTTGGTACTTCTTGGTTATCAGATGAATTGAAATTGCAAGCGCTTGTATCTCTCTGAGTATTGTGACCTCTAGAAGATTGCGTTTTTGTTTCAGAGTTGTGATTTTCTGTTTTAAAGTTTCTTGTCAAGTTGAGTTGAAGTTGTTGCATTGAACGCTAGAATGGAAGGTAACAAGGATGAGGCTTTAAGGTGCATTGGTATTGCCAAGGAGGCAATTGCATCTGGCAATAAGCAGAAAGCACTCAAGTTTATCAGAATTGCACGGCGCCTTAACAATGATCTATCTGTGGAAGATCTTTTGGCTGCATGTGAAAATCTGGAGTCACCGACTCCTGAGTCCTCAAGTGAGGTTAGAAATGTTGAAAATAAGAAAAATGACACGAGTCGTGTTAAGTCTGATGAGGTATCCGATGGGGAGAGGAACTATACTGACGAACATGTGCAGTTGATTAGGCAAATTAAGATTAAGAAGGACTATTACGCGATTCTTGGTCTAGAGAAGGGTTGTTCAGTTGAGGAGATTAGGAAGTCGTACAGGAAACTGTCA-TTGAAAGTTCATCCCGACAAAAATAAGGCTCCAGGCTCTGAAGAGGCATTTAAGAAAGTATCCAAGGCATTTAAGTGTTTGAGTGATGATGATT</genome_strand>
        <mrna_strand>TTTTTTGCGACTCTCAAAATCTCCTCTTTCTCTGCTCGCCGTCCGGTCAGTC-GT---CTCTTTCGATTTCACTTCCGGTAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTGAAATTGCAAGCGCTTGCATCTCTCTGAGTATTGTGATCTCTAGAAGATCGCGTTTTTGTTTCAGAGCTGTGATTTTCTGTTTTAGAGTTTCTTGTCAAGTTGAGTTGAAGTTGTTGCATTGAACGCTAGAATGGAAGGTAACAAGGATGAGGCTTTAAGGTGCATTGGTATTGCCAAGGAGGCAATTGCATCTGGCAATAAGCAGAAAGCACTCAAGTTTATCAGAATTGCACGGCGCCTTAACAATGATCTATCTGTGGAAGGTCTTTTGGCTGCTTGTGAAAATCTGGAGTCATCGACTCCTGAGTCCTCAAGTGAGGTTAGAAATGTTGAAAATATGAAAAATGACAGGAGTCATGTTAAGTCTGATGAGGTATCCGATGGGGAGAGGAACTATACTGACGAACATGTGCAGTTGATTAGGCAAATTAAGACTAAGAAGGACTATTACGCGATTCTTGGTCTAGAGAAGGGTTGTTCAGTTGAGGAGATTAGGAAGTCATACAGGAAACTGTCATTTGAAAG-TCATCCTGACAAAAATAAGGCTCCAGGCTCTGAAGAGGCATTTTAGAAAGTATCCANGGCATTTAAGTGGTTGAGTGATGATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12SLe0062N07-tH0F4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9007" ref_strand="+" ref_description="SGN-M9007 C2_At5g49060 [cosii_markers]">
      <seq>tgaggttagaaatgttgaaaataagaaaaatgacacgagtcgtgttaagtctgatgaggtatccgatggggagaggaactatactgacgaacatgtgcagttgattaggcaaattaagattaagaaggactattacgcgattcttggtctagagaagggttgttcagttgaggagattaggaagtcgtacaggaaactgtcattgaaagttcatcccgacaaaaataaggctccaggctctgaagaggcatttaagaaagtatccaaggcatttaagtgtttgagtgatgatgattcaaggaggcagtatgaccagacaggtttggctgaggatttcgagtataatcagcagcataatgtcaggcgcaggaggagaactgggcacagctattatgatgatgattttgatcctgatgagattttcagagcgttttttgggcgttccgatatgtttaggacagctcatgtttacaggacaagaacaaatgctgctccccagagagaggatttaggttccactgggcccaacttccttctcctccttcagttattgccatttttaatcatcattttacttgcttatcttcctttctcggagccagagtattctttgcagaagaactaccaatatcagtttaggaagatgaccgaagaacatggagtagaatattttgttaaatcacatgaatttgatcagaagtatcctcttggtagtcctgatcgagatacattgaagaacatgttattagggattacaaaaatatgcttggtcgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12SLe0062N07-tH0F4/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12SLe0062N07.1" temp_strand="+" temp_description="C12SLe0062N07.1  AC235573.2 htgs_phase:2 submitted_to_sgn_as:gi|238909030|gb|AC235573.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone SL_EcoRI-62N7, WORKING DRAFT SEQUENCE">
        <position start="113735" stop="115114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114035" g_stop="114814" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12SLe0062N07.1" gen_strand="+" ref_id="SGN-M9007" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12SLe0062N07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114035" e_stop="114814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGTTAGAAATGTTGAAAATAAGAAAAATGACACGAGTCGTGTTAAGTCTGATGAGGTATCCGATGGGGAGAGGAACTATACTGACGAACATGTGCAGTTGATTAGGCAAATTAAGATTAAGAAGGACTATTACGCGATTCTTGGTCTAGAGAAGGGTTGTTCAGTTGAGGAGATTAGGAAGTCGTACAGGAAACTGTCATTGAAAGTTCATCCCGACAAAAATAAGGCTCCAGGCTCTGAAGAGGCATTTAAGAAAGTATCCAAGGCATTTAAGTGTTTGAGTGATGATGATTCAAGGAGGCAGTATGACCAGACAGGTTTGGCTGAGGATTTCGAGTATAATCAGCAGCATAATGTCAGGCGCAGGAGGAGAACTGGGCACAGCTATTATGATGATGATTTTGATCCTGATGAGATTTTCAGAGCGTTTTTTGGGCGTTCCGATATGTTTAGGACAGCTCATGTTTACAGGACAAGAACAAATGCTGCTCCCCAGAGAGAGGATTTAGGTTCCACTGGGCCCAACTTCCTTCTCCTCCTTCAGTTATTGCCATTTTTAATCATCATTTTACTTGCTTATCTTCCTTTCTCGGAGCCAGAGTATTCTTTGCAGAAGAACTACCAATATCAGTTTAGGAAGATGACCGAAGAACATGGAGTAGAATATTTTGTTAAATCACATGAATTTGATCAGAAGTATCCTCTTGGTAGTCCTGATCGAGATAACATTGAAGACCATGTTATTAGGGATTACAAAAATATGCTTGGTCGTTACTG</genome_strand>
        <mrna_strand>TGAGGTTAGAAATGTTGAAAATAAGAAAAATGACACGAGTCGTGTTAAGTCTGATGAGGTATCCGATGGGGAGAGGAACTATACTGACGAACATGTGCAGTTGATTAGGCAAATTAAGATTAAGAAGGACTATTACGCGATTCTTGGTCTAGAGAAGGGTTGTTCAGTTGAGGAGATTAGGAAGTCGTACAGGAAACTGTCATTGAAAGTTCATCCCGACAAAAATAAGGCTCCAGGCTCTGAAGAGGCATTTAAGAAAGTATCCAAGGCATTTAAGTGTTTGAGTGATGATGATTCAAGGAGGCAGTATGACCAGACAGGTTTGGCTGAGGATTTCGAGTATAATCAGCAGCATAATGTCAGGCGCAGGAGGAGAACTGGGCACAGCTATTATGATGATGATTTTGATCCTGATGAGATTTTCAGAGCGTTTTTTGGGCGTTCCGATATGTTTAGGACAGCTCATGTTTACAGGACAAGAACAAATGCTGCTCCCCAGAGAGAGGATTTAGGTTCCACTGGGCCCAACTTCCTTCTCCTCCTTCAGTTATTGCCATTTTTAATCATCATTTTACTTGCTTATCTTCCTTTCTCGGAGCCAGAGTATTCTTTGCAGAAGAACTACCAATATCAGTTTAGGAAGATGACCGAAGAACATGGAGTAGAATATTTTGTTAAATCACATGAATTTGATCAGAAGTATCCTCTTGGTAGTCCTGATCGAGAT-ACATTGAAGAACATGTTATTAGGGATTACAAAAATATGCTTGGTCGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="111610" PGL_stop="114814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111610" e_stop="111694"/>
            <exon e_start="113712" e_stop="114814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.987" e_score="0.929"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="111610" e_stop="111694" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.987">
            <gDNA_intron_boundary i_start="111695" i_stop="113711" i_length="2017"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="113712" e_stop="114814" e_length="1103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111610" stop="111694"/>
              <exon start="113712" stop="114330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9007-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114035" stop="114814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9007" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTGCGACTCTCAAAATCTCCTCTTTCTCTGCTCGCCGTCCGGTCGGTCGGTCGGCTCTTTCGATTTTACTTCCGGTAGCAG : ATGAATTGAAATTGCAAGCGCTTGTATCTCTCTGAGTATTGTGACCTCTAGAAGATTGCGTTTTTGTTTCAGAGTTGTGATTTTCTGTTTTAAAGTTTCTTGTCAAGTTGAGTTGAAGTTGTTGCATTGAACGCTAGAATGGAAGGTAACAAGGATGAGGCTTTAAGGTGCATTGGTATTGCCAAGGAGGCAATTGCATCTGGCAATAAGCAGAAAGCACTCAAGTTTATCAGAATTGCACGGCGCCTTAACAATGATCTATCTGTGGAAGATCTTTTGGCTGCATGTGAAAATCTGGAGTCACCGACTCCTGAGTCCTCAAGTGAGGTTAGAAATGTTGAAAATAAGAAAAATGACACGAGTCGTGTTAAGTCTGATGAGGTATCCGATGGGGAGAGGAACTATACTGACGAACATGTGCAGTTGATTAGGCAAATTAAGATTAAGAAGGACTATTACGCGATTCTTGGTCTAGAGAAGGGTTGTTCAGTTGAGGAGATTAGGAAGTCGTACAGGAAACTGTCATTGAAAGTTCATCCCGACAAAAATAAGGCTCCAGGCTCTGAAGAGGCATTTAAGAAAGTATCCAAGGCATTTAAGTGTTTGAGTGATGATGATTCAAGGAGGCAGTATGACCAGACAGGTTTGGCTGAGGATTTCGAGTATAATCAGCAGCATAATGTCAGGCGCAGGAGGAGAACTGGGCACAGCTATTATGATGATGATTTTGATCCTGATGAGATTTTCAGAGCGTTTTTTGGGCGTTCCGATATGTTTAGGACAGCTCATGTTTACAGGACAAGAACAAATGCTGCTCCCCAGAGAGAGGATTTAGGTTCCACTGGGCCCAACTTCCTTCTCCTCCTTCAGTTATTGCCATTTTTAATCATCATTTTACTTGCTTATCTTCCTTTCTCGGAGCCAGAGTATTCTTTGCAGAAGAACTACCAATATCAGTTTAGGAAGATGACCGAAGAACATGGAGTAGAATATTTTGTTAAATCACATGAATTTGATCAGAAGTATCCTCTTGGTAGTCCTGATCGAGATAACATTGAAGACCATGTTATTAGGGATTACAAAAATATGCTTGGTCGTTACTG</gDNA_template>
            <first_frame> F  F  A  T  L  K  I  S  S  F  S  A  R  R  P  V  G  R  S  A  L  S  I  L  L  P  V  A   : D  E  L  K  L  Q  A  L  V  S  L  *  V  L  *  P  L  E  D  C  V  F  V  S  E  L  *  F  S  V  L  K  F  L  V  K  L  S  *  S  C  C  I  E  R  *  N  G  R  *  Q  G  *  G  F  K  V  H  W  Y  C  Q  G  G  N  C  I  W  Q  *  A  E  S  T  Q  V  Y  Q  N  C  T  A  P  *  Q  *  S  I  C  G  R  S  F  G  C  M  *  K  S  G  V  T  D  S  *  V  L  K  *  G  *  K  C  *  K  *  E  K  *  H  E  S  C  *  V  *  *  G  I  R  W  G  E  E  L  Y  *  R  T  C  A  V  D  *  A  N  *  D  *  E  G  L  L  R  D  S  W  S  R  E  G  L  F  S  *  G  D  *  E  V  V  Q  E  T  V  I  E  S  S  S  R  Q  K  *  G  S  R  L  *  R  G  I  *  E  S  I  Q  G  I  *  V  F  E  *  *  *  F  K  E  A  V  *  P  D  R  F  G  *  G  F  R  V  *  S  A  A  *  C  Q  A  Q  E  E  N  W  A  Q  L  L  *  *  *  F  *  S  *  *  D  F  Q  S  V  F  W  A  F  R  Y  V  *  D  S  S  C  L  Q  D  K  N  K  C  C  S  P  E  R  G  F  R  F  H  W  A  Q  L  P  S  P  P  S  V  I  A  I  F  N  H  H  F  T  C  L  S  S  F  L  G  A  R  V  F  F  A  E  E  L  P  I  S  V  *  E  D  D  R  R  T  W  S  R  I  F  C  *  I  T  *  I  *  S  E  V  S  S  W  *  S  *  S  R  *  H  *  R  P  C  Y  *  G  L  Q  K  Y  A  W  S  L  L </first_frame>
            <second_frame>  F  L  R  L  S  K  S  P  L  S  L  L  A  V  R  S  V  G  R  L  F  R  F  Y  F  R  *  Q  :  M  N  *  N  C  K  R  L  Y  L  S  E  Y  C  D  L  *  K  I  A  F  L  F  Q  S  C  D  F  L  F  *  S  F  L  S  S  *  V  E  V  V  A  L  N  A  R  M  E  G  N  K  D  E  A  L  R  C  I  G  I  A  K  E  A  I  A  S  G  N  K  Q  K  A  L  K  F  I  R  I  A  R  R  L  N  N  D  L  S  V  E  D  L  L  A  A  C  E  N  L  E  S  P  T  P  E  S  S  S  E  V  R  N  V  E  N  K  K  N  D  T  S  R  V  K  S  D  E  V  S  D  G  E  R  N  Y  T  D  E  H  V  Q  L  I  R  Q  I  K  I  K  K  D  Y  Y  A  I  L  G  L  E  K  G  C  S  V  E  E  I  R  K  S  Y  R  K  L  S  L  K  V  H  P  D  K  N  K  A  P  G  S  E  E  A  F  K  K  V  S  K  A  F  K  C  L  S  D  D  D  S  R  R  Q  Y  D  Q  T  G  L  A  E  D  F  E  Y  N  Q  Q  H  N  V  R  R  R  R  R  T  G  H  S  Y  Y  D  D  D  F  D  P  D  E  I  F  R  A  F  F  G  R  S  D  M  F  R  T  A  H  V  Y  R  T  R  T  N  A  A  P  Q  R  E  D  L  G  S  T  G  P  N  F  L  L  L  L  Q  L  L  P  F  L  I  I  I  L  L  A  Y  L  P  F  S  E  P  E  Y  S  L  Q  K  N  Y  Q  Y  Q  F  R  K  M  T  E  E  H  G  V  E  Y  F  V  K  S  H  E  F  D  Q  K  Y  P  L  G  S  P  D  R  D  N  I  E  D  H  V  I  R  D  Y  K  N  M  L  G  R  Y   </second_frame>
            <third_frame>   F  C  D  S  Q  N  L  L  F  L  C  S  P  S  G  R  S  V  G  S  F  D  F  T  S  G  S  R :   *  I  E  I  A  S  A  C  I  S  L  S  I  V  T  S  R  R  L  R  F  C  F  R  V  V  I  F  C  F  K  V  S  C  Q  V  E  L  K  L  L  H  *  T  L  E  W  K  V  T  R  M  R  L  *  G  A  L  V  L  P  R  R  Q  L  H  L  A  I  S  R  K  H  S  S  L  S  E  L  H  G  A  L  T  M  I  Y  L  W  K  I  F  W  L  H  V  K  I  W  S  H  R  L  L  S  P  Q  V  R  L  E  M  L  K  I  R  K  M  T  R  V  V  L  S  L  M  R  Y  P  M  G  R  G  T  I  L  T  N  M  C  S  *  L  G  K  L  R  L  R  R  T  I  T  R  F  L  V  *  R  R  V  V  Q  L  R  R  L  G  S  R  T  G  N  C  H  *  K  F  I  P  T  K  I  R  L  Q  A  L  K  R  H  L  R  K  Y  P  R  H  L  S  V  *  V  M  M  I  Q  G  G  S  M  T  R  Q  V  W  L  R  I  S  S  I  I  S  S  I  M  S  G  A  G  G  E  L  G  T  A  I  M  M  M  I  L  I  L  M  R  F  S  E  R  F  L  G  V  P  I  C  L  G  Q  L  M  F  T  G  Q  E  Q  M  L  L  P  R  E  R  I  *  V  P  L  G  P  T  S  F  S  S  F  S  Y  C  H  F  *  S  S  F  Y  L  L  I  F  L  S  R  S  Q  S  I  L  C  R  R  T  T  N  I  S  L  G  R  *  P  K  N  M  E  *  N  I  L  L  N  H  M  N  L  I  R  S  I  L  L  V  V  L  I  E  I  T  L  K  T  M  L  L  G  I  T  K  I  C  L  V  V  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12SLe0062N07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113823" stop="114812"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEVVALNARMEGNKDEALRCIGIAKEAIASGNKQKALKFIRIARRLNNDLSVEDLLAACENLESPTPESSSEVRNVENKKNDTSRVKSDEVSDGERNYTDEHVQLIRQIKIKKDYYAILGLEKGCSVEEIRKSYRKLSLKVHPDKNKAPGSEEAFKKVSKAFKCLSDDDSRRQYDQTGLAEDFEYNQQHNVRRRRRTGHSYYDDDFDPDEIFRAFFGRSDMFRTAHVYRTRTNAAPQREDLGSTGPNFLLLLQLLPFLIIILLAYLPFSEPEYSLQKNYQYQFRKMTEEHGVEYFVKSHEFDQKYPLGSPDRDNIEDHVIRDYKNMLGRY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 8 chains have been computed
$ 
$ memory statistics:
$ 3808 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 1904 bytes was the average size of a spliced alignment
$ 5560 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5560 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 8 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:14:00
-->
